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Conserved domains on  [gi|376322227|gb|AFB19588|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Stachyris strialata]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 3.05e-154

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 436.56  E-value: 3.05e-154
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227   1 MTPQAKLIFTSSLMLGTTITISSNHWITAWAGLEINTLAILPLIAKSHHPRAIEAATKYFLTQATASTLLLFSATMNAWH 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227  81 TGQWDITQLTHPTACLILTSALAMKLGLAPFHFWFPEVLQGSPLTTALLLSTVMKLPPMALLLMTSPSLNPTLLTSMAIL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227 161 SAALGGWMGLNQTQIRKILAFSSISHLGWMAIIVSYDPKLTLLNFYLYILMTATVFLTLNTIKTSKLSTLMTTWTKTPAL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227 241 SAMLLLTLLSLAGLPPFTGFMPKWLIIQELTKQSMAPAATTIALLSLLSLFFYLRLAYCAAITLPPHTTNHMKQWHTSSP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 376322227 321 TSTIIAILTTLSTMLLPISPMILTIL 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 3.05e-154

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 436.56  E-value: 3.05e-154
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227   1 MTPQAKLIFTSSLMLGTTITISSNHWITAWAGLEINTLAILPLIAKSHHPRAIEAATKYFLTQATASTLLLFSATMNAWH 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227  81 TGQWDITQLTHPTACLILTSALAMKLGLAPFHFWFPEVLQGSPLTTALLLSTVMKLPPMALLLMTSPSLNPTLLTSMAIL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227 161 SAALGGWMGLNQTQIRKILAFSSISHLGWMAIIVSYDPKLTLLNFYLYILMTATVFLTLNTIKTSKLSTLMTTWTKTPAL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227 241 SAMLLLTLLSLAGLPPFTGFMPKWLIIQELTKQSMAPAATTIALLSLLSLFFYLRLAYCAAITLPPHTTNHMKQWHTSSP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 376322227 321 TSTIIAILTTLSTMLLPISPMILTIL 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 8.79e-27

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 107.40  E-value: 8.79e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227   23 SNHWITAWAGLEINTLAILPLIA-KSHHPRAIEAATKYFLTQATASTLLLFSATMNAWHTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227   91 HPTACLILTSALAMKLGLAPFHFWFPEVLQGSPLT-TALLLSTVMKLPPMALLLMTSPSLNPT-----LLTSMAILSAAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGGYGLIRRSLLYLPSSpfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227  165 GGWMGLNQTQIRKILAFSSISHLGWMAIIVS----YDPKLTLLNFYLYILMTATVFL-----TLNTIKTSKLSTLMTTWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 376322227  236 KTPALSAMLLLTLLSLAGLPPFTGFMPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 15-270 1.21e-25

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 106.74  E-value: 1.21e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227  15 LGTTITISSNHWITAWAGLEINTLAILPLIA-KSHHPRAIEAATKYFLTQATASTLLLFSATMNAWHTGQWDITQLTHP- 92
Cdd:COG1007  113 LGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLNLAGIAAAl 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227  93 -----------TACLILTSALAMKLGLAPFHFWFPEVLQGSPLTTALLLSTVMKLPPMALLL----MTSPSLNP---TLL 154
Cdd:COG1007  193 aaggansplllLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLrllvEAFPGLAAdwqLLL 272

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227 155 TSMAILSAALGGWMGLNQTQIRKILAFSSISHLGWM--AIIVSYDPKLTLLNFYL--YILMTATVFLTLNTIK-----TS 225
Cdd:COG1007  273 AVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLllGLAAGTPLGVSAALFYLlaYLFMNLGAFAVILLLSrkggeAE 352

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 376322227 226 KLSTLMTTWTKTPALSAMLLLTLLSLAGLPPFTGFMPKWLIIQEL 270
Cdd:COG1007  353 EIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAA 397
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 15-275 6.14e-21

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 93.09  E-value: 6.14e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227   15 LGTTITISSNHWITAWAGLEINTLAILPLIA-KSHHPRAIEAATKYFLTQATASTLLLFSATMNAWHTGQWDITQLTHP- 92
Cdd:TIGR01770 113 LGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFl 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227   93 -----------TACLILTSALAMKLGLAPFHFWFPEVLQGSPLTTALLLSTVMKLPPMALLLMTSPSL-------NPTLL 154
Cdd:TIGR01770 193 sngmlnislllLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYIlfgfseaWQIFL 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227  155 TSMAILSAALGGWMGLNQTQIRKILAFSSISHLGWMAIIVSYDPKLTLLN--FYL--YILMTATVFLTLNTIKTSK---- 226
Cdd:TIGR01770 273 AIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLSLLRSYKdewi 352

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 376322227  227 --LSTLMTTWTKTPALSAMLLLTLLSLAGLPPFTGFMPKWLIIQELTKQSM 275
Cdd:TIGR01770 353 eyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGL 403
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 3.05e-154

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 436.56  E-value: 3.05e-154
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227   1 MTPQAKLIFTSSLMLGTTITISSNHWITAWAGLEINTLAILPLIAKSHHPRAIEAATKYFLTQATASTLLLFSATMNAWH 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227  81 TGQWDITQLTHPTACLILTSALAMKLGLAPFHFWFPEVLQGSPLTTALLLSTVMKLPPMALLLMTSPSLNPTLLTSMAIL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227 161 SAALGGWMGLNQTQIRKILAFSSISHLGWMAIIVSYDPKLTLLNFYLYILMTATVFLTLNTIKTSKLSTLMTTWTKTPAL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227 241 SAMLLLTLLSLAGLPPFTGFMPKWLIIQELTKQSMAPAATTIALLSLLSLFFYLRLAYCAAITLPPHTTNHMKQWHTSSP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 376322227 321 TSTIIAILTTLSTMLLPISPMILTIL 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-346 2.02e-131

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 378.76  E-value: 2.02e-131
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227   1 MTPQAKLIFTSSLMLGTTITISSNHWITAWAGLEINTLAILPLIAKSHHPRAIEAATKYFLTQATASTLLLFSATMNAWH 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227  81 TGQWDITQLTHPTACLILTSALAMKLGLAPFHFWFPEVLQGSPLTTALLLSTVMKLPPMALLLMTSPSlNPTLLTSMAIL 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227 161 SAALGGWMGLNQTQIRKILAFSSISHLGWMAIIVSYDPKLTLLNFYLYILMTATVFLTLNTIKTSKLSTLMTTWTKTPAL 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227 241 SAMLLLTLLSLAGLPPFTGFMPKWLIIQELTKQSMAPAATTIALLSLLSLFFYLRLAYCAAITLPPHTTNHMKQWHTSSP 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319

                        330       340
                 ....*....|....*....|....*..
gi 376322227 321 TSTI-IAILTTLSTMLLPISPMILTIL 346
Cdd:MTH00135 320 QLTLpLAISTTATLMLLPLTPAILALL 346
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-346 1.39e-127

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 368.86  E-value: 1.39e-127
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227   1 MTPQAKLIFTSSLMLGTTITISSNHWITAWAGLEINTLAILPLIAKSHHPRAIEAATKYFLTQATASTLLLFSATMNAWH 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227  81 TGQWDITQLTHPTACLILTSALAMKLGLAPFHFWFPEVLQGSPLTTALLLSTVMKLPPMALLLMTSPSLNPTLLTSMAIL 160
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227 161 SAALGGWMGLNQTQIRKILAFSSISHLGWMAIIVSYDPKLTLLNFYLYILMTATVFLTLNTIKTSKLSTLMTTWTKTPAL 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227 241 SAMLLLTLLSLAGLPPFTGFMPKWLIIQELTKQSMAPAATTIALLSLLSLFFYLRLAYCAAITLPPHTTNHMKQWHTSSP 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320

                        330       340
                 ....*....|....*....|....*.
gi 376322227 321 TSTIIAILTTLSTMLLPISPMILTIL 346
Cdd:MTH00070 321 TNNLLSLTIILSLMLLPITPTILNLF 346
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-345 6.23e-117

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 341.83  E-value: 6.23e-117
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227   1 MTPQAKLIFTSSLMLGTTITISSNHWITAWAGLEINTLAILPLIAKSHHPRAIEAATKYFLTQATASTLLLFSATMNAWH 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227  81 TGQWDITQLTHPTACLILTSALAMKLGLAPFHFWFPEVLQGSPLTTALLLSTVMKLPPMALLLMTSPSLNPTLLTSMAIL 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227 161 SAALGGWMGLNQTQIRKILAFSSISHLGWMAIIVSYDPKLTLLNFYLYILMTATVFLTLNTIKTSKLSTLMTTWTKTPAL 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227 241 SAMLLLTLLSLAGLPPFTGFMPKWLIIQELTKQSMAPAATTIALLSLLSLFFYLRLAYCAAITLPPhTTNHMK-QWH-TS 318
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFP-STNNMKmKWQfEN 319

                        330       340
                 ....*....|....*....|....*..
gi 376322227 319 SPTSTIIAILTTLSTMLLPISPMILTI 345
Cdd:MTH00105 320 TKPMTLLPTLIILSTMLLPLTPMLSIL 346
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-346 9.75e-96

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 288.02  E-value: 9.75e-96
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227   1 MTPQAKLIFTSSLMLGTTITISSNHWITAWAGLEINTLAILPLIAKSHHPRAIEAATKYFLTQATASTLLLFSATMNAWH 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227  81 TGQWDITQLTHPTACLILTSALAMKLGLAPFHFWFPEVLQGSPLTTALLLSTVMKLPPMALLLMTSPSLNPTLLTSMAIL 160
Cdd:MTH00200  81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227 161 SAALGGWMGLNQTQIRKILAFSSISHLGWMAIIVSYDPKLTLLNFYLYILMTATVFLTLNTIKTSKLSTLMTTWTKTPAL 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227 241 SAMLLLTLLSLAGLPPFTGFMPKWLIIQELTKQSMAPAATTIALLSLLSLFFYLRLAYCAAITLPPHTTNHMKQWHTSSP 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320

                        330       340
                 ....*....|....*....|....*.
gi 376322227 321 TSTIIAILTTLSTMLLPISPMILTIL 346
Cdd:MTH00200 321 SNLLVGLLLLLSILGLPLTPQLLFLF 346
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 7-267 3.60e-75

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 235.60  E-value: 3.60e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227   7 LIFTSSLMLGTTITISSNHWITAWAGLEINTLAILPLIAKSHHPRAIEAATKYFLTQATASTLLLFSATMNAWHTGQWDI 86
Cdd:MTH00041   7 IFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSI 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227  87 TQLTHPTACLILTSALAMKLGLAPFHFWFPEVLQGSPLTTALLLSTVMKLPPMALLLMTSPSLNPTLLTSMAILSAALGG 166
Cdd:MTH00041  87 NGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGG 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227 167 WMGLNQTQIRKILAFSSISHLGWMAIIVSYDPKLTLLNFYLYILMTATVFLTLNTIKTSKLSTLMTTWTKTPALSAMLLL 246
Cdd:MTH00041 167 WGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFIL 246

                        250       260
                 ....*....|....*....|.
gi 376322227 247 TLLSLAGLPPFTGFMPKWLII 267
Cdd:MTH00041 247 SILSLGGLPPLTGFLNKFISL 267
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-345 4.30e-55

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 183.10  E-value: 4.30e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227   1 MTPQAKLIFTSSLMLGTTITISSNHWITAWAGLEINTLAILPLIAKSHHPRAIEAATKYFLTQATASTLLLFSATMNAWh 80
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227  81 tgqwdITQLTHPTACLILTSALAMKLGLAPFHFWFPEVLQGSPLTTALLLSTVMKLPPMALLLMTspsLNPTLLTSMAIL 160
Cdd:MTH00160  81 -----NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIIL 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227 161 SAALGGWMGLNQTQIRKILAFSSISHLGWMAIIVSYDPKLTLLNFYLYILMTATVFLTLNTIKTSKLSTLMTTWTKTPAL 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227 241 SAMLLLTLLSLAGLPPFTGFMPKWLIIQELTKQSMAPAATTIALLSLLSLFFYLRLAYCAAITLPPHTTNHMKQwhTSSP 320
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKK--KKNK 310

                        330       340
                 ....*....|....*....|....*
gi 376322227 321 TSTIIAILTTLSTMLLPISPMILTI 345
Cdd:MTH00160 311 FSLILNFLSFISLFGLILSSLLFLL 335
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 5-275 2.59e-49

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 167.76  E-value: 2.59e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227   5 AKLIFTSSLMLGTTITISSNHWITAWAGLEINTLAILPLIAKSHHPRAIEAATKYFLTQATASTLLLFSATMNAWHTGQW 84
Cdd:MTH00144   5 SNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227  85 DITqlthptacLILTSALAMKLGLAPFHFWFPEVLQGSPLTTALLLSTVMKLPPMALLLMTSPSLNP-TLLTSMAILSAA 163
Cdd:MTH00144  85 FSM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSAL 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227 164 LGGWMGLNQTQIRKILAFSSISHLGWMAIIVSYDPKLTLLNFYLYILMTATVFLTLNTiKTSKLSTLMTTWTKTPALSAM 243
Cdd:MTH00144 157 VGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWS-GDSGSMKDLGSLKPSYKTGLS 235

                        250       260       270
                 ....*....|....*....|....*....|..
gi 376322227 244 LLLTLLSLAGLPPFTGFMPKWLIIQELTKQSM 275
Cdd:MTH00144 236 IISLLLSLGGLPPFLGFCSKLLVLISSMESSP 267
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 7-340 1.76e-44

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 155.32  E-value: 1.76e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227   7 LIFTSSLMLGTTITISSNHWITAWAGLEINTLAILPLIAKSHHPRAIEAATKYFLTQATASTLLLFSATMnawhtgQWDI 86
Cdd:MTH00011   9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTM------MWSF 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227  87 TQLTHPTACLILTSALAMKLGLAPFHFWFPEVLQGSPLTTALLLSTVMKLPPMALLLMTSPSLNPTLLTSMAILSAALGG 166
Cdd:MTH00011  83 PSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGG 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227 167 WMGLNQTQIRKILAFSSISHLGWMAIIVSYDPKLTLLNFYLYILMTATVFLTLNTIKTSKLSTLMTTWTKTPALSAMLLL 246
Cdd:MTH00011 163 LGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFI 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227 247 TLLSLAGLPPFTGFMPKWLIIQELTKQSMAPAATTIALLSLLSLFFYLRLAYcAAITLPPHTTNhmkqwHTSSPTSTIIA 326
Cdd:MTH00011 243 MLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIF-NFMYLSPTFSS-----LKSAPYEPKTK 316

                        330
                 ....*....|....
gi 376322227 327 ILTTLSTMLLPISP 340
Cdd:MTH00011 317 ILISMCTLSLGLIP 330
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 8-270 1.09e-36

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 134.80  E-value: 1.09e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227   8 IFTSSLMLGTTITISSNHWITAWAGLEINTLAILPLIAKSHHPRAIEAATKYFLTQATASTLLLFSATMNAWHTgqwdit 87
Cdd:MTH00197   2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL------ 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227  88 qLTHPTACLILTSALAMKLGLAPFHFWFPEVLQGSPLTTALLLSTVMKLPPmaLLLMTSPSLNPTLLTSMAILSAALGGW 167
Cdd:MTH00197  76 -YLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAP--LLILAFNSSSFMGLLICSVLSSLIGGI 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227 168 MGLNQTQIRKILAFSSISHLGWMAIIVSYDPKLTLLNFYLYILMTATVFLTLNTIKTSKLSTLMTTWTKTPALSAMLLLT 247
Cdd:MTH00197 153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLS 232

                        250       260
                 ....*....|....*....|...
gi 376322227 248 LLSLAGLPPFTGFMPKWLIIQEL 270
Cdd:MTH00197 233 FLSLGGLPPLSGFFLKWLILTSL 255
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 15-267 2.80e-28

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 112.82  E-value: 2.80e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227  15 LGTTITISSNHWITAWAGLEINTLAILPLIA-KSHHPRAIEAATKYFLTQATASTLLLFSATMNAWHTGQWDI------- 86
Cdd:MTH00196   4 LGILCLISSSNWLSVYLAIELQTLSLFILIAqNRGSGYSAEAGLKYFVLGALSSGLFLFGCALLCGTTGGLHLsyinlvl 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227  87 ------TQLTHPTACLILTSALAMKLGLAPFHFWFPEVLQGSPLTTALLLSTVMKLPPMALLLMTSPSLNptLLTSMAIL 160
Cdd:MTH00196  84 nsgqsfSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVN--ILLIGGLF 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227 161 SAALGGWMGLNQTQIRKILAFSSISHLGWMAIIVSYDP----KLTLLNFYLYILMTATVFLTLNTIKTSK--LSTLMTTW 234
Cdd:MTH00196 162 SLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSICVFSIILALNVYKnlIIEFSGLS 241

                        250       260       270
                 ....*....|....*....|....*....|...
gi 376322227 235 TKTPALSAMLLLTLLSLAGLPPFTGFMPKWLII 267
Cdd:MTH00196 242 RRLPILAITLALTFLSIAGIPPLVGFLGKWLIL 274
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 8.79e-27

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 107.40  E-value: 8.79e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227   23 SNHWITAWAGLEINTLAILPLIA-KSHHPRAIEAATKYFLTQATASTLLLFSATMNAWHTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227   91 HPTACLILTSALAMKLGLAPFHFWFPEVLQGSPLT-TALLLSTVMKLPPMALLLMTSPSLNPT-----LLTSMAILSAAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGGYGLIRRSLLYLPSSpfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227  165 GGWMGLNQTQIRKILAFSSISHLGWMAIIVS----YDPKLTLLNFYLYILMTATVFL-----TLNTIKTSKLSTLMTTWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 376322227  236 KTPALSAMLLLTLLSLAGLPPFTGFMPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 15-270 1.21e-25

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 106.74  E-value: 1.21e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227  15 LGTTITISSNHWITAWAGLEINTLAILPLIA-KSHHPRAIEAATKYFLTQATASTLLLFSATMNAWHTGQWDITQLTHP- 92
Cdd:COG1007  113 LGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLNLAGIAAAl 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227  93 -----------TACLILTSALAMKLGLAPFHFWFPEVLQGSPLTTALLLSTVMKLPPMALLL----MTSPSLNP---TLL 154
Cdd:COG1007  193 aaggansplllLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLrllvEAFPGLAAdwqLLL 272

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227 155 TSMAILSAALGGWMGLNQTQIRKILAFSSISHLGWM--AIIVSYDPKLTLLNFYL--YILMTATVFLTLNTIK-----TS 225
Cdd:COG1007  273 AVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLllGLAAGTPLGVSAALFYLlaYLFMNLGAFAVILLLSrkggeAE 352

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 376322227 226 KLSTLMTTWTKTPALSAMLLLTLLSLAGLPPFTGFMPKWLIIQEL 270
Cdd:COG1007  353 EIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAA 397
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 15-267 1.81e-25

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 106.25  E-value: 1.81e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227  15 LGTTITISSNHWITAWAGLEINTLAILPLIA-KSHHPRAIEAATKYFLTQATASTLLLFSATMNAWHTGQWDI----TQL 89
Cdd:MTH00199 108 LGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIqginSIL 187

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227  90 THPTACLILTSALAMKLGLAPFHFWFPEVLQGSPLTTALLLSTVMKLPPMALLLMTSPSLNPTLLTsmAILSAALGGWMG 169
Cdd:MTH00199 188 TGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSIIYGAIGA 265

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227 170 LNQTQIRKILAFSSISHLGW----MAIIVSYDPKLTLLNFYLYILMTATVFLTLNTIKTSK--LSTLMTTWTKTPALSAM 243
Cdd:MTH00199 266 LNQTKIKRLLAYSGIGHMGFilfgVAIGSFESIQASLIYMIIYVIMSICSFSIILSLKLTKglIVEVSGLSRKNPVIALT 345

                        250       260
                 ....*....|....*....|....
gi 376322227 244 LLLTLLSLAGLPPFTGFMPKWLII 267
Cdd:MTH00199 346 LALTFLSIAGIPPLAGFLSKWLIL 369
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
15-279 2.28e-22

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 97.58  E-value: 2.28e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227  15 LGTTITISSNHWITAWAGLEINTLAILPLIA-KSHHPRAIEAATKYFLTQATASTLLLFSATMNAWHTGQWDITQLTHPT 93
Cdd:PRK05777 114 LGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIAKAL 193

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227  94 A------------CLILTSALAMKLGLAPFHFWFPEVLQGSPLTTALLLSTVMKLPPMALLL----MTSPSLNPT---LL 154
Cdd:PRK05777 194 AdgsgnsllllfgLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLLrllvVAFGGLSEDwqqVL 273

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227 155 TSMAILSAALGGWMGLNQTQIRKILAFSSISHLGWM---AIIVSYDPKLTLLnFYL--YILMTATVFLTLNTIKT----- 224
Cdd:PRK05777 274 AIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLlvgLAAGTAEGYSAVL-FYLlaYLFMTLGAFGVISLLRRkggea 352

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 376322227 225 ---SKLSTLMTTwtkTPALSAMLLLTLLSLAGLPPFTGFMPKWLIIQELTKQSMAPAA 279
Cdd:PRK05777 353 esiSDFAGLSKR---SPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLA 407
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 15-275 6.14e-21

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 93.09  E-value: 6.14e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227   15 LGTTITISSNHWITAWAGLEINTLAILPLIA-KSHHPRAIEAATKYFLTQATASTLLLFSATMNAWHTGQWDITQLTHP- 92
Cdd:TIGR01770 113 LGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFl 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227   93 -----------TACLILTSALAMKLGLAPFHFWFPEVLQGSPLTTALLLSTVMKLPPMALLLMTSPSL-------NPTLL 154
Cdd:TIGR01770 193 sngmlnislllLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYIlfgfseaWQIFL 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227  155 TSMAILSAALGGWMGLNQTQIRKILAFSSISHLGWMAIIVSYDPKLTLLN--FYL--YILMTATVFLTLNTIKTSK---- 226
Cdd:TIGR01770 273 AIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLSLLRSYKdewi 352

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 376322227  227 --LSTLMTTWTKTPALSAMLLLTLLSLAGLPPFTGFMPKWLIIQELTKQSM 275
Cdd:TIGR01770 353 eyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGL 403
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 13-283 4.17e-18

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 84.81  E-value: 4.17e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227  13 LMLGTTITISSNHWITAWAGLEINTLAILPLIAKSHHPRAIEAATKYFLTQATASTLLLFSATMNAWHTGQWDITQLTH- 91
Cdd:COG0651  116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAAr 195

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227  92 ---------PTACLILTSALAMKLGLAPFHFWFPEVLQGSPLTTALLLSTVM-KLPPMALL----LMTSPSLNP---TLL 154
Cdd:COG0651  196 laeldpgllLAAFALLLVGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLtKVGVYAILrvltLLFGADPALflgTLL 275

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227 155 TSMAILSAALGGWMGLNQTQIRKILAFSSISHLGWMAIIVSYDPKLTLLNFYLYI----LMTATVFLT----LNTIKTSK 226
Cdd:COG0651  276 LVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLlnhaLAKALLFLAagaiERATGTRD 355

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 376322227 227 LSTLMTTWTKTPALSAMLLLTLLSLAGLPPFTGFMPKWLIIQELTKQSMAPAATTIA 283
Cdd:COG0651  356 LDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLL 412
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 15-210 4.77e-18

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 85.30  E-value: 4.77e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227  15 LGTTITISSNHWITAWAGLEINTLAILPLIAKSHHPRAI---------EAATKYFLTQATASTLLLFSATMNAWHTGQ-- 83
Cdd:MTH00198 199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNeg 278

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227  84 --WDITQLTHPT----------ACLILTSALAMKLGLAPFHFWFPEVLQGSPLTTALLLSTVMKLppMALLLMTSPSLNP 151
Cdd:MTH00198 279 mlGTILSATLETtnielrqgslGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--TVYILLTSLVITS 356

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 376322227 152 TLLTSMAILSAALGGWMGLNQTQIRKILAFSSISHLGWMAIIVSYDPKLTLLNFYLYIL 210
Cdd:MTH00198 357 KLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYAV 415
ndhB CHL00049
NADH dehydrogenase subunit 2
 1-208 1.18e-12

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 68.49  E-value: 1.18e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227   1 MTPQAKLIFTSSLMLGTTITISSNHWITAWAGLEINTLAILPLIAKSHHP-RAIEAATKYFLTQATASTLLLFSAT---- 75
Cdd:CHL00049 108 MAITEFLLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTKKDvRSNEATMKYLLMGGASSSILVYGFSwlyg 187

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227  76 MNAWHTGQWDI------TQLTHPTACLI----LTSALAMKLGLAPFHFWFPEVLQGSPLTTALLLSTVMKLPPMAL---- 141
Cdd:CHL00049 188 LSGGEIELQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAASALatri 267

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 376322227 142 LLMTSPSLNP---TLLTSMAILSAALGGWMGLNQTQIRKILAFSSISHLGWMAI-IVSYDPK------LTLLNFYLY 208
Cdd:CHL00049 268 FDIPFYFSSNewhLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIgIIVGDSNdgyasmITYMLFYIF 344
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-266 2.62e-12

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 67.43  E-value: 2.62e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227  33 LEINTLAILPLIA-KSHHPRAIEAATKYFLTQATASTLLLFSATMNAWHTGQWDITQLTH-----PT-----ACLILTSA 101
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGIALLYGQYGTLNMAYLAVkmsenPTvvakiALALFIAG 229

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227 102 LAMKLGLAPFHFWFPEVLQGSP--LTTALLLSTVMKLPPMALLLMT--SPSLNPT----LLTSMAILSAALGGWMGLNQT 173
Cdd:PRK08376 230 LAMKSGAVPVHMWLPDAYPAAPssISAMLLVIKQAGLYALARVLFSiyGPAINLAtvgwVIIILGCLTMFVGVAMAVVQK 309

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227 174 QIRKILAFSSISHLGWM------AIIVSYDPKLT----------LLNFYLYILMTATVFLT----LNTIKTSKLSTLMTT 233
Cdd:PRK08376 310 DVKRLLAYHSVSQIGYMllglgvGLAALGDPAMAsygeialaggIYHIVNHALYKALLFLTagavIYETGTRNLNELGGL 389

                        250       260       270
                 ....*....|....*....|....*....|...
gi 376322227 234 WTKTPALSAMLLLTLLSLAGLPPFTGFMPKWLI 266
Cdd:PRK08376 390 ARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-282 1.66e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 64.90  E-value: 1.66e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227  33 LEINTLAILPLIAKSHHPRAIEAATKYFLTQATASTLLLFSATMNAWHTGQWDITQL--------THPTACLILTSALAM 104
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLagalaenpTVVTAFGFVLLALAL 214

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227 105 KLGLAPFHFWFPEVLQG-SPLTTALLLSTVMKLPPMALL----------LMTSPSLNpTLLTSMAILSAALGGWMGLNQT 173
Cdd:PRK08375 215 KAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAVYALIriyftvfggdFRFALGLG-WLLAVLALLSMLVGSLAALGQD 293

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227 174 QIRKILAFSSISHLGWMAIIVSYDPKLTLLNFYLYI----LMTATVFLTLNTI-------KTSKLSTLMTtwtKTPALSA 242
Cdd:PRK08375 294 DVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLlhhaLMKGALFLAAGAIevtygtrRLSELSGLGR---RMPLTAA 370

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|
gi 376322227 243 MLLLTLLSLAGLPPFTGFMPKWLIIQELTKQSMAPAATTI 282
Cdd:PRK08375 371 AFAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVL 410
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-192 1.77e-10

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 61.99  E-value: 1.77e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227  50 PRAIEAATKYFLTQATASTLLLFSATM----NAWHTGQWDITQLTHPTACLILTSAL-------AMKLGLAPFHFWFPEV 118
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYGSSLlyglSGGSTQLSAIALALITSPSLGLALALvfviagiAFKISAVPFHQWTPDV 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227 119 LQGSPLTTALLLSTVMKLPPMAL---LLMTS-PSLNP---TLLTSMAILSAALGGWMGLNQTQIRKILAFSSISHLGWMA 191
Cdd:PRK02504 237 YEGSPTPVVAFLSVGSKAAGFALairLLVTAfPSFDEqwkLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVM 316


                 .
gi 376322227 192 I 192
Cdd:PRK02504 317 I 317
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 49-192 7.24e-10

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 60.09  E-value: 7.24e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227  49 HPRAIEAATKYFLTQATASTLLLFSATMNAWHTGQW--DITQLTH-----PTACLILTS---ALAMKLGLAPFHFWFPEV 118
Cdd:COG1008  156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAaplplTAQLLLFLAffiAFAVKVPMFPFHTWLPDA 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227 119 LQGSPLTTALLLSTVM-KLP-------PMALLLMTSPSLNPTLLTsMAILSAALGGWMGLNQTQIRKILAFSSISHLGWM 190
Cdd:COG1008  236 HVEAPTAGSVLLAGVLlKMGgygllrfALPLFPEASAYFAPLLAA-LGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFV 314


                 ..
gi 376322227 191 AI 192
Cdd:COG1008  315 LL 316
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 13-219 1.63e-07

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 52.83  E-value: 1.63e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227  13 LMLGTTITISSNHWITAWAGLEINTLAILPLIAKSHHPRAIEAATKYFLTQATA------STLLLFSATMNAWHTGQWDI 86
Cdd:PRK08676 111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227  87 TQL-----------THPTACLILTSALAmKLGLAPFHFWFPEVLQGSP-LTTALLLSTVMKLPPMALLLMTS-------P 147
Cdd:PRK08676 191 TELaahasllspsvLGASFLFIFIGFLA-KSGLVPFHTWLPAAYAKAPsVVSALLSGTVLNIGIYGILRLSAllrqsgaA 269

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 376322227 148 SLNPTLLTSMAILSAALGGWMGLNQTQIRKILAFSSISHLGWMAIIVSYDPKLTLLNFYLYILMTATVFLTL 219
Cdd:PRK08676 270 EQFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLVKSGL 341
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-192 2.33e-07

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 52.25  E-value: 2.33e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227   50 PRAIEAATKYFLTQATASTLLLFSATMNAW-HTGQWDITQLT----HPTACLILTSAL----AMKLGLAPFHFWFPEVLQ 120
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFlGGGTFDLLELLnlplPFGVQTWLFLAFfiafAVKVPLFPLHTWLPDAHV 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227  121 GSPLTTALLLS-TVMKLPPMALLLMTSPsLNP-------TLLTSMAILSAALGGWMGLNQTQIRKILAFSSISHLGWMAI 192
Cdd:TIGR01972 232 EAPTAGSVILAgVLLKMGTYGFLRFNLP-LFPdaslyfaPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLL 310
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
34-268 8.95e-07

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 50.42  E-value: 8.95e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227  34 EINTLAILPLIAKSHHPRAIEAATKYFLTQATASTLLLFSATMNAWHTGQWDITQ-----LTHPTACLILTSALAMKLGL 108
Cdd:PRK06277 130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDihnalLVNPTSPVIYGGLLLLIFGL 209

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227 109 A------PFHFWFPEVLQGSPLTTALLLSTVMKLPPMALLLMT---------SPSLNpTLLTSMAILSAALGGWMGLNQT 173
Cdd:PRK06277 210 LygsglpPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALMLVIfklfgglsyFPSAQ-GVLIALSVLAMVFGVVMALLQT 288

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227 174 QIRKILAFSSISHLGWMAIIVSYDPKLT----LLNFYLYILMTATVFLTLNTI----KTSKLSTLMTTWTKTPALSAMLL 245
Cdd:PRK06277 289 DYKRLLAYHAISQGGYVAAGLALGTPLGivagIFHAINHVIYKSALFLGAGIVsyrtKTSNLRKLGGLLPVMPVVAFMVL 368

                        250       260
                 ....*....|....*....|...
gi 376322227 246 LTLLSLAGLPPFTGFMPKWLIIQ 268
Cdd:PRK06277 369 CAKLAISGVPPFNGFQSKLMLAQ 391
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 7-190 2.65e-06

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 49.00  E-value: 2.65e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227   7 LIFTSSlMLGTTItisSNHWITAWAGLEINTLAILPLIAKSHH-PRAIEAATKYFLTQATASTLLLFSATMNAWHTGQWD 85
Cdd:COG1009  118 LLFMAA-MLGLVL---SDNLLLLFVFWELVGLCSYLLIGFWYEkPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLN 193

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227  86 ITQLTH------------PTACLILTSALAmKLGLAPFHFWFPEVLQGSPLTTALLLSTVMKLPPMALLLMTSP--SLNP 151
Cdd:COG1009  194 FSELLAaaptilssplltLILLLLLLGAFG-KSAQFPLHFWLPDAMEGPTPVSALLHAATMVKAGVYLLARLSPlfALSP 272

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 376322227 152 TLLTSMAILSAA---LGGWMGLNQTQIRKILAFSSISHLGWM 190
Cdd:COG1009  273 VWLTVVAIIGAItalFAALIALAQTDIKRVLAYSTVSQLGYM 314
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-189 2.87e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 48.79  E-value: 2.87e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227  33 LEINTLAILPLIAKSHHPRAIEAATKYFLTQATASTLLLFSATMNAWHTGQWDITQLTH--PTACLILTSALAMKLGLAP 110
Cdd:PRK07234 123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATadPEAFALIALGLLVKGGIFV 202

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227 111 FHFWFPEVLQGS-PLTTALLLSTVMKLPPMALLLMTSPSLNPTL-LTSMAILSAALGGWMGLNQTQIRKILAFSSISHLG 188
Cdd:PRK07234 203 SGLWLPLTHSEAePPVSALLSGVVVKAGVFPLVRCALDVPGLDLiVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQLG 282


                 .
gi 376322227 189 W 189
Cdd:PRK07234 283 F 283
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 96-263 2.99e-06

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 49.15  E-value: 2.99e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227  96 LILTSALAmKLGLAPFHFWFPEVLQGSPLTTALLLSTVM---------KLPPMallLMTSPSLNPTLLTsMAILSAALGG 166
Cdd:PRK12644 208 LILVGALS-KSAIVPFHFWLPGAMAAPTPVSAYLHAAAMvkagiylvaRLAPG---FADVPVWRPTVLV-LGLATMLLGG 282

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227 167 WMGLNQTQIRKILAFSSISHLGWMAIIVSY-DPKLTLLNFYLYI---LMTATVFLTLNTIKTS-------KLSTLmttWT 235
Cdd:PRK12644 283 WRALRQHDLKLILAYGTVSQLGFLTVLVGIgTRDAALAGLAMLLahaLFKAALFLVVGIIDHStgtrdirKLSGL---GR 359

                        170       180
                 ....*....|....*....|....*...
gi 376322227 236 KTPALSAMLLLTLLSLAGLPPFTGFMPK 263
Cdd:PRK12644 360 RQPVLAVVAALAAASMAGLPPLLGFVAK 387
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 9-192 3.58e-06

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 48.39  E-value: 3.58e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227   9 FTSSLMLGTTITISSNHWITAWAGLEINTLAILPLIAKSHHPRAIEAATKYFL------TQATASTLLLFSATMnawhtg 82
Cdd:PRK06458 113 MYQLFLFTMLLALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIicsvgvAFALFGTILVYANAA------ 186

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227  83 qwdiTQLTHPTACLILTSALAM----------------------KLGLAPFHFWFPEVLQGSPLTTALLLSTVmkLPPMA 140
Cdd:PRK06458 187 ----TVMGDGEMAILWTELLKHaslldptlmklafvflligfgtKVGLFPMHAWLPDAHSEAPSPVSALLSGV--LLNVA 260

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 376322227 141 LL------LMTSPSLNP----TLLTSMAILSAALGGWMGLNQTQIRKILAFSSISHLGWMAI 192
Cdd:PRK06458 261 LYavlryyILIDAAIGSdfpgRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAF 322
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-267 8.79e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 47.42  E-value: 8.79e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227  33 LEINTLAILPLIAKSHHPRAIEAATKYFLTQATASTLLLFSATMNAWHTGQWDITQL-----------THPTACLILTSA 101
Cdd:PRK12662 139 LEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGIGFLYAITGTLNMGDMfliiqdlptnrAIQIGVLFIMVG 218

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227 102 LAMKLGLAPFHFWFPEVLQGSPLTTALLLS-TVMKLPPM-----------ALLLMTSPSLNpTLLTSMAILSAALGGWMG 169
Cdd:PRK12662 219 LFIKAALFPFHKWLIQAYSEAPSFISVFFSgTSTKVMIYliirivydvfkANFVFTTLPFN-NVFMILAALAIVFGSVLA 297

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227 170 LNQTQIRKILAFSSISHLGWMAIIVSYDPKLTLLNFYLYI----LMTATVFLTLNTIK----TSKLSTLMTTWTKTPALS 241
Cdd:PRK12662 298 ILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIvnhsIVKSALFMVSGSISyhfgTTKLEDCLNLWKSMPKIT 377

                        250       260
                 ....*....|....*....|....*.
gi 376322227 242 AMLLLTLLSLAGLPPFTGFMPKWLII 267
Cdd:PRK12662 378 LAFVLLSLSLIGMPPTSGFVAKWYIL 403
PRK12650 PRK12650
DUF4040 family protein;
29-190 1.34e-05

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 46.96  E-value: 1.34e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227  29 AWaglEINTLAILPLIAKSHhPRAIEAATKYFLTQATASTLLLFSATMNAWHTGQWDITQLTHPTACL---ILTSALAMK 105
Cdd:PRK12650 138 AW---ELVSLASFFLIARSG-SGGEAGSIRTLILTFFGGLTLLAAVAIAATQTGTTSLSGILHSDVWAekpGLTTVVAVL 213

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227 106 LGLA--------PFHFWFPEVLQGSPLTTALLLSTVMKLPPMALLLMTSPSL--NPT---LLTSMAILSAALGGWMGLNQ 172
Cdd:PRK12650 214 IAVAaftksaqfPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFhdVAVwnwLLIIVGMITALMGAVFAVQK 293

                        170
                 ....*....|....*...
gi 376322227 173 TQIRKILAFSSISHLGWM 190
Cdd:PRK12650 294 TDLKKLTAYSTVSQLGWI 311
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 3-275 2.22e-05

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 46.14  E-value: 2.22e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227   3 PQAKLIFTSSLMLGTTITISSNHWITAWAGLEINTLAILPLIAKSHHpRAIEAATKYFLTQATASTLLLFSATMNAWHTG 82
Cdd:PRK08668  97 DAYFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTG 175

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227  83 QWDIT-------QLTHPTACLI----LTSALAMKLGLAPFHFWFPEVLQGSPLTTALLLSTVMK-------------LPP 138
Cdd:PRK08668 176 TFDFAdisqgliNDTSTGFALIvflfLLAFGVAKAGIFPLHVWAPDAYSEAPQSFSAVLSGQLSklgaygfllvlyvLPG 255

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227 139 MALLL-----MTSPSLNPTLLTSMAIlSAALGGWMGLNQTQIRKILAFSSISHLGW----MAIIVSYDPKLTLLNFYLYI 209
Cdd:PRK08668 256 TKLFSefgtyRGVPLFNYILAWLGNI-SIIVGTLMAILQEDIKKLIAYSSVANGGYilvgLGLGTSLGFAGGLFHVFNHA 334

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227 210 LMTATVFLTLNTI----KTSKLSTLMTTWTKTPALSAMLLLTLLSLAGLPPFTGFMPKWLIIQELTKQSM 275
Cdd:PRK08668 335 LFKGLFFLIFAAViyrtGTTKISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGM 404
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 295-340 2.71e-05

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 41.09  E-value: 2.71e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 376322227  295 RLAYCAAITLPPHTTNHMKQWHTSSP-TSTIIAILTTLSTMLLPISP 340
Cdd:pfam06444   5 RLSYSTTLTLFPNTNNSKMKWRFNSTkNTLLLPTLTTLSILLLPLTP 51
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 48-263 3.05e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 45.98  E-value: 3.05e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227  48 HHPRAIEAATKYFLTQATASTLLLFSATMNAWHTGQWDITQLTHP---------------TACLILTSAlAMKLGLAPFH 112
Cdd:PRK12649 156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDselienikghplfliTLILIFIGA-AAKSAQGPFY 234

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227 113 FWFPEVLQGSPLTTALLLSTVMKLPPMALLLMTSPSLNPT-----LLTSMAILSAALGGWMGLNQTQIRKILAFSSISHL 187
Cdd:PRK12649 235 IWLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQL 314

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227 188 GWMAIIVSY----DPKLTLLNFYLYIL----MTATVFLTLNTI----KTSKLSTLMTTWTKTPALSAMLLLTLLSLAGLP 255
Cdd:PRK12649 315 AYLMTMYGYttyhEPGLGVAAATFHLLnhatFKACLFLVAGIVaheaATRDIRKLGGLRKEMPITFIVASIAALAMAGIP 394


                 ....*...
gi 376322227 256 PFTGFMPK 263
Cdd:PRK12649 395 PLNGFLSK 402
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 43-192 4.13e-05

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 45.19  E-value: 4.13e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227  43 LIAKSHHPRAIEAATKYFLTQATASTLLLFS----ATMNAWHTGQWDITQLTHPT-----------ACLIltsALAMKLG 107
Cdd:PRK05846 150 LIGVWGGKNRIYAATKFFLYTLLGSLLMLVAiiylVVVYYNATGTFDIADLLNLPlppgvqywlflAFFI---AFAVKMP 226

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227 108 LAPFHFWFPEVLQGSPLTTALLLSTVM-KLPPMALLLMTSPsLNPTLLTSMAILSAAL-------GGWMGLNQTQIRKIL 179
Cdd:PRK05846 227 MFPLHTWLPDAHVQAPTAGSVLLAGILlKMGAYGLLRFSLP-LFPDASHEFAPIIITLgviaiiyGALVALAQTDIKKLI 305

                        170
                 ....*....|...
gi 376322227 180 AFSSISHLGWMAI 192
Cdd:PRK05846 306 AYSSISHMGFVTL 318
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
34-268 5.00e-05

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 44.94  E-value: 5.00e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227  34 EINTLAILPLIAKSHHPRAIEAATKYFLTQATASTLLLFS--------ATMNAWHTGQwDITQLTH----PTACLILTSA 101
Cdd:PRK12663 138 EVMLIASFVLITLGQEREQLRGAIKYVVLNLIGSWLFLLGigllygtfGTLNMAHIAM-RLNDMGDtatlTTIALLFLLA 216

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227 102 LAMKLGLAPFhFWFPEVLQGSPLTTALLLSTVMK-------LPPMALLLMTSPSLNPTLLTSMAILSAALGGWMGLNQTQ 174
Cdd:PRK12663 217 FGMKAALFPF-MWLPAAYHTPNTEVAALFAALLTkvgiyalIRVFTLLFPQERELLHPLLATMAAITMVIGALGALAYKD 295

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227 175 IRKILAFSSISHLGWMAIIVSYDPKLTLLN--FYLY---ILMTATVFLTLNTIK---TSKLSTLMTTWTKTPALSAMLLL 246
Cdd:PRK12663 296 IRRIAGYQVISSIGFILLGLALGTPAGINGaiFYLVhdmVVKTALFLIAGSLVRltgYRSLQYLGGLYRKEPLFGALFLI 375

                        250       260
                 ....*....|....*....|..
gi 376322227 247 TLLSLAGLPPFTGFMPKWLIIQ 268
Cdd:PRK12663 376 LIFAIGGLPPFSGFWGKVLLVQ 397
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 13-267 5.65e-05

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 44.76  E-value: 5.65e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227  13 LMLGTTITISSNHWITAWAGLEINTLAILPLIAKSHHPRAIEAATKYFLTQATASTLLLFSATMNAWHTGQWDITQLTH- 91
Cdd:PRK08377 117 LMLGATGMIATGDIFNLFVFMEITAITAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLIGVALIYGATGTLNMAHIAQl 196

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227  92 -----PTACLI----LTSALAMKLGLAPFHFWFPEVLQGSPL-TTALLLSTVMK--LPPMALLLMTSPSLNP-----TLL 154
Cdd:PRK08377 197 agtidPTVAQVglalLIFGLAVEAELFPLNAWAPDAYQAAPHpITVMFSAFVVKagLYAMARILYLMQNANGwssvlKLV 276

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227 155 TSMAILSAALGGWMGLNQTQIRKILAFSSISHLGWMAIIVSYDPKLTLLNFYLYILMTATV----FLTLN----TIKTSK 226
Cdd:PRK08377 277 IIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALALGTQAGVDAGVFHMINHAIVkallFLAVGyvgiTLGGTE 356

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|.
gi 376322227 227 LSTLMTTWTKTPALSAMLLLTLLSLAGLPPFTGFMPKWLII 267
Cdd:PRK08377 357 IEKFEGLGKRMPLTALALTIGALSTVGIPLFNVFWSKFRII 397
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
18-190 1.18e-04

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 43.92  E-value: 1.18e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227  18 TITISSNHW---ITAWA--GLEINTLailpLIAKSHHPRAIEAATKYFLTQATASTLLLFSATMNAWHTGQWDITQL--- 89
Cdd:PRK08168 114 HLLVLSDHLlvlIAAWAaiSLALHRL----LCFYPDRPFARLAAHKKFIADRLAELLLLAAAALAYLEVGSLSLSALwah 189

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227  90 --THPT------ACLILTSALAMKLGLAPFHFWFPEVLQGSPLTTALLLSTVMKLPPMAL-----LLMTSPSLNpTLLTS 156
Cdd:PRK08168 190 laAQGAspslqaAALLLVLAVILKTAQLPVHGWLIQVMEAPTPVSALLHAGVVNLGGFVLirfapLLEQAPPAR-WLLVL 268

                        170       180       190
                 ....*....|....*....|....*....|....
gi 376322227 157 MAILSAALGGWMGLNQTQIRKILAFSSISHLGWM 190
Cdd:PRK08168 269 VGLATAVLAGLVMLTRISIKVRLAWSTVAQMGFM 302
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 101-197 1.55e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 43.37  E-value: 1.55e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227 101 ALAMKLGLAPFHFWFPEVLQGSPLTTALLLSTV-MKLPPMALLLMTSP-------SLNPTLLtSMAILSAALGGWMGLNQ 172
Cdd:MTH00226 239 AMAVKIPIFPFHIWLPKAHVEAPVAGSVLLAGIlLKLGGYGLVRLSWPilplgaqNLAPAVI-AMGIVGIVYGSFATCRQ 317

                         90       100
                 ....*....|....*....|....*.
gi 376322227 173 TQIRKILAFSSISHLGWMAI-IVSYD 197
Cdd:MTH00226 318 IDVKRLVAYSSVAHMGLVSItLVTHD 343
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
38-203 2.08e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 43.15  E-value: 2.08e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227  38 LAILPL---IAKSHHPRAIEAATKYFLTQATASTLLLFSATMNAWHTG-------QWDITQLTHPTACLILTS---ALAM 104
Cdd:PRK06473 138 LELIPLyllIAIWGGQRRGYAATKFLLYTAISGILILVSFLGLVWLSGassfdyePLRSHTLPLSTQLLLLAPilvGFGI 217

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227 105 KLGLAPFHFWFPEV-LQGSPLTTALLLSTVMKLPP-------MALLLMTSPSLNPTLLTsMAILSAALGGWMGLNQTQIR 176
Cdd:PRK06473 218 KIPLVPFHTWLPDAhVEASTPVSVLLAGVLLKLGTygllrfgVGLFPEAWVYLAPWLAT-WAVVSVLYGASCAIAQKDMK 296

                        170       180
                 ....*....|....*....|....*..
gi 376322227 177 KILAFSSISHLGWMAIIVSYDPKLTLL 203
Cdd:PRK06473 297 KMVAYSSIGHMGYILLAAAAATPLSIL 323
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 59-270 3.21e-04

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 42.41  E-value: 3.21e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227  59 YFLTQATASTLLLFSATMNAW-HTGQWDITQLTHPTACLILT-----SALAMKLGLAPFHFWFPEVLQGSPLTTALLLST 132
Cdd:PRK08667 166 FYFVMTQLSTVFLMLGIIVLFiQTGSFELSPLGASAGILSLVflllfLGFGIKAGIIPFHKWLPYAHPASPSNVSALMSG 245

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227 133 VM-KLPPMALLLMTSPSLNPTLLTSMAIL-----SAALGGWMGLNQTQIRKILAFSSISHLG--------WMAIIVSYDP 198
Cdd:PRK08667 246 VMlKVAVYGLVRFLMDVLSPELWWGVLILlagsiSALLGVIYALKEHDLKGLLAYSSIENIGiilmgiglYVIFGVYGLD 325

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227 199 KLTLLN-------------FYLYILMTA-TVFLTLNTIKTSKLSTLMTtwtKTPALSAMLLLTLLSLAGLPPFTGFMPKW 264
Cdd:PRK08667 326 TLALLAlggalfhslnhalFKSLLFLTAgSVVHATGTRNIEKMGGLVK---LMPYTSALFLVGAVSIAALPPFNGFASEL 402


                 ....*.
gi 376322227 265 LIIQEL 270
Cdd:PRK08667 403 LLYESF 408
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 105-271 4.81e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 41.87  E-value: 4.81e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227 105 KLGLapfHFWFPEVLQGSPLTTALLLSTVMKLPPMALLLMTSPSLNPTLLTSMAI-----LSAALGGWMGLNQTQIRKIL 179
Cdd:MTH00032 241 QLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSFPLFEKAPLTLLIItifgaLTAFFAATVGLVQNDLKKVI 317

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227 180 AFSSISHLGWMAIIVSYDPKLTLLNFYL--YILMTATVFLTLNTIKTS---------KLSTLMTTwtkTPALSAMLLLTL 248
Cdd:MTH00032 318 AYSTCSQLGYMVLIIGIEGSHNVGLFHLvnHAFFKALLFLSAGSVIHSttvdeqdmrKMGGLIHS---IPFTYTMMLIGS 394

                        170       180
                 ....*....|....*....|...
gi 376322227 249 LSLAGLPPFTGFMPKWLIIqELT 271
Cdd:MTH00032 395 FSIMGLPYLTGFYSKDLIL-ELT 416
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 110-283 5.51e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 41.83  E-value: 5.51e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227 110 PFHFWFPEVLQGSPLTTALLLSTVMKLPPMALLLMTSPSLNPT-----LLTSMAILSAALGGWMGLNQTQIRKILAFSSI 184
Cdd:PRK12647 213 PFHFWLPNAMEAPTPVSAYLHSATMVKAGIYLLARLNPVLGGTplwqtILPLFGGLTMLTGALLAVRQTDLKLILAYSTV 292

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227 185 SHLGWMAIIVSYDPKLTLLNFYLYI----LMTATVFLTLNTIK----TSKLSTLMTTWTKTPALSAMLLLTLLSLAGLPP 256
Cdd:PRK12647 293 SALGTLVMLLGLGSELAIKAAVLFLvahsLYKGALFMVAGIIDhetgTRDITKLGGLRRAMPITAAAALLAALSMAGLPP 372

                        170       180
                 ....*....|....*....|....*..
gi 376322227 257 FTGFMPKWLIIQELTKQSMAPAATTIA 283
Cdd:PRK12647 373 LFGFLAKELIYEALLEAPLWSLILTVA 399
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
52-190 8.11e-04

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 41.16  E-value: 8.11e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227  52 AIEAATKYFLTQATASTLLLFSATMNAWHTGQWDITQLTHPTACLILTSALAMKLGLA----------------PFHFWF 115
Cdd:PRK07376 171 AADAAQKAFVVNRVGDFGLLLGILGLFWATGSFDFDGIADRLSELVSSGAVSGWLALLlcilvflgpmaksaqfPLHVWL 250

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227 116 PEVLQGSPLTTALLLSTVMKLPPMALLLMTSP--SLNPTLLTSMAI---LSAALGGWMGLNQTQIRKILAFSSISHLGWM 190
Cdd:PRK07376 251 PDAMEGPTPISALIHAATMVAAGVFLVARMYPvfEQFPAVMTVIAWtgaITAFLGASIALTQNDIKKGLAYSTISQLGYM 330
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 9-274 8.70e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 40.96  E-value: 8.70e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227   9 FTSSLMLGTTITISSNhWITAWAGLEINTLAILPLIAKSHHPRAIEAATKYFLTQATASTLLLFSATM---NAWHTGQW- 84
Cdd:PRK06589 122 FNLTILIGVLIALSSD-LFTMFVCYELLTISTAFLIGHTRNNISLSGGYKYLKILMISALLLFLPAVIliyTKTGNLDFv 200

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227  85 --DITQLTHPTACLILTSALAMKLGLAPFHFWFPEVLQGSPLTTALLLSTVM----KLPPMALLLMTSPSLNPTLLTSM- 157
Cdd:PRK06589 201 sgGLFSKNQSIILLLMFIYGIAKTAIFPVHSWLPAAMVAHYPVSALLHAVIVvktgLFCIYKILLYIFGLSYLQRIFAEf 280

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227 158 ------AILSAALGGWMGLNQTQIRKILAFSSISHLGWMAIIVSY--DPKLTLLNFYL--YILMTATVFLTLNTI----K 223
Cdd:PRK06589 281 nwlifiPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALLSAFIltPKALGAAILHLvsHSFAKICLFYSMGSIyslkK 360

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 376322227 224 TSKLSTLMTTWTKTPALSAMLLLTLLSLAGLPPFTGFMPKWLIIQELTKQS 274
Cdd:PRK06589 361 EDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQN 411
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-197 4.07e-03

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 38.86  E-value: 4.07e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227  55 AATKYFLTQATASTLLLFSATMNAWHTGQ--WDITQLTH---PTACLILTS-----ALAMKLGLAPFHFWFPEVL-QGSP 123
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGAksyPLALELLLYagfliAFGVKLPIFPLHTWLPDAHgEASA 217

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227 124 LTTALLLSTVMKLPPMALLLMTSPSLNPT------LLTSMAILSAALGGWMGLNQTQIRKILAFSSISHLGWMAI-IVSY 196
Cdd:PRK12561 218 PVSMILAGVLLKMGGYALIRFNVQMLPDAhvyfapALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLLgIAAF 297


                 .
gi 376322227 197 D 197
Cdd:PRK12561 298 T 298
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 96-268 6.78e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 38.03  E-value: 6.78e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227  96 LILTSALAMKLGLAPFHFWFPEVLQGSP-LTTALLLSTVMKLPPMAL-----LLMTSPSLNpTLLTSMAILSAALGGWMG 169
Cdd:PRK12665 213 AVLLVAFGIKAAVFPLSFWLPDSYPTAPaPVTAVFAGLLTKVGVYAIirthtLLFPGGGLD-TLLMVVALLTMVVGILGA 291

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227 170 LNQTQIRKILAFSSISHLGWM--AIIVSYDPKLTLLNFYL--YILMTATVFLTLNTIK----TSKLSTLMTTWTKTPALS 241
Cdd:PRK12665 292 IAQSDIKRLLSFTLVSHIGYMvfGIALSTVAGLSGAIYYVahHITVQTTLFLVVGLIErqagSSSLRRLGGLAKASPLLA 371

                        170       180
                 ....*....|....*....|....*..
gi 376322227 242 AMLLLTLLSLAGLPPFTGFMPKWLIIQ 268
Cdd:PRK12665 372 VLFFVPALNLGGIPPFSGFIGKVALLE 398
PRK12646 PRK12646
DUF4040 family protein;
110-213 7.71e-03

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 38.20  E-value: 7.71e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 376322227 110 PFHFWFPEVLQGSPLTTALLLSTVMKLPPMALLLMTSPSLNPT-----LLTSMAILSAALGGWMGLNQTQIRKILAFSSI 184
Cdd:PRK12646 228 PFHIWLPRAMAAPTPVSAYLHSATMVKAGIFLLFRFTPLLGLSnmyiyIVTFVGLITMLFGSITALKQWDLKGILAYSTI 307

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 376322227 185 SHLGWMAIIV------SYDPKLTLLNFYLYILMTA 213
Cdd:PRK12646 308 SQLGMIMAMVgigggyAQHQQDAIASIYVFVLFAA 342
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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