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Conserved domains on  [gi|383397835|gb|AFH22612|]
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putative terminase small subunit [environmental Halophage eHP-30]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG3747 super family cl01525
Phage terminase, small subunit [Mobilome: prophages, transposons];
36-139 7.21e-16

Phage terminase, small subunit [Mobilome: prophages, transposons];


The actual alignment was detected with superfamily member TIGR01558:

Pssm-ID: 470235  Cd Length: 116  Bit Score: 68.98  E-value: 7.21e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383397835   36 QAPSWLSKRAKSAYRDLANDLHKMGVVTKEDKHQLSIICQEYAQYVELQQMLEREGFTYWTYtnDGSAiqKKHYEADMAQ 115
Cdd:TIGR01558   1 RAPDWLGKEGKDEWKRVAPELKGSGILTNLDRDALLRYCEAYDRYREATDDLEATGITATVE--DGSP--KANPALTVVE 76

                          90       100
                  ....*....|....*....|....
gi 383397835  116 QKAKFVNDQLSKFGLDPSNRHKVS 139
Cdd:TIGR01558  77 DAFKQLRSIGSALGLTPSSRSRLV 100
 
Name Accession Description Interval E-value
sm_term_P27 TIGR01558
phage terminase, small subunit, putative, P27 family; This model describes a distinct family ...
 36-139 7.21e-16

phage terminase, small subunit, putative, P27 family; This model describes a distinct family of phage (and integrated prophage) putative terminase small subunit. Members tend to be adjacent to the phage terminase large subunit gene. [Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 273691  Cd Length: 116  Bit Score: 68.98  E-value: 7.21e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383397835   36 QAPSWLSKRAKSAYRDLANDLHKMGVVTKEDKHQLSIICQEYAQYVELQQMLEREGFTYWTYtnDGSAiqKKHYEADMAQ 115
Cdd:TIGR01558   1 RAPDWLGKEGKDEWKRVAPELKGSGILTNLDRDALLRYCEAYDRYREATDDLEATGITATVE--DGSP--KANPALTVVE 76

                          90       100
                  ....*....|....*....|....
gi 383397835  116 QKAKFVNDQLSKFGLDPSNRHKVS 139
Cdd:TIGR01558  77 DAFKQLRSIGSALGLTPSSRSRLV 100
Terminase_4 pfam05119
Phage terminase, small subunit;
45-143 2.49e-15

Phage terminase, small subunit;


Pssm-ID: 461553 [Multi-domain]  Cd Length: 96  Bit Score: 67.27  E-value: 2.49e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383397835   45 AKSAYRDLANDLHKMGVVTKEDKHQLSIICQEYAQYVELQQMLEREGFtywTYTNDGSAIQKKHYEADMAQQKAKFVNDQ 124
Cdd:pfam05119   1 AKKEWKRIAPELEELGLLTELDVAALAAYCEAYARYREAERDIAEEGL---TIETTNGNNLKKNPAVAIANDALKQMRKL 77

                          90
                  ....*....|....*....
gi 383397835  125 LSKFGLDPSNRHKVSRIDD 143
Cdd:pfam05119  78 AAELGLTPSSRSRLAVEKE 96
 
Name Accession Description Interval E-value
sm_term_P27 TIGR01558
phage terminase, small subunit, putative, P27 family; This model describes a distinct family ...
 36-139 7.21e-16

phage terminase, small subunit, putative, P27 family; This model describes a distinct family of phage (and integrated prophage) putative terminase small subunit. Members tend to be adjacent to the phage terminase large subunit gene. [Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 273691  Cd Length: 116  Bit Score: 68.98  E-value: 7.21e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383397835   36 QAPSWLSKRAKSAYRDLANDLHKMGVVTKEDKHQLSIICQEYAQYVELQQMLEREGFTYWTYtnDGSAiqKKHYEADMAQ 115
Cdd:TIGR01558   1 RAPDWLGKEGKDEWKRVAPELKGSGILTNLDRDALLRYCEAYDRYREATDDLEATGITATVE--DGSP--KANPALTVVE 76

                          90       100
                  ....*....|....*....|....
gi 383397835  116 QKAKFVNDQLSKFGLDPSNRHKVS 139
Cdd:TIGR01558  77 DAFKQLRSIGSALGLTPSSRSRLV 100
Terminase_4 pfam05119
Phage terminase, small subunit;
45-143 2.49e-15

Phage terminase, small subunit;


Pssm-ID: 461553 [Multi-domain]  Cd Length: 96  Bit Score: 67.27  E-value: 2.49e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383397835   45 AKSAYRDLANDLHKMGVVTKEDKHQLSIICQEYAQYVELQQMLEREGFtywTYTNDGSAIQKKHYEADMAQQKAKFVNDQ 124
Cdd:pfam05119   1 AKKEWKRIAPELEELGLLTELDVAALAAYCEAYARYREAERDIAEEGL---TIETTNGNNLKKNPAVAIANDALKQMRKL 77

                          90
                  ....*....|....*....
gi 383397835  125 LSKFGLDPSNRHKVSRIDD 143
Cdd:pfam05119  78 AAELGLTPSSRSRLAVEKE 96
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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