|
Name |
Accession |
Description |
Interval |
E-value |
| recA |
PRK09354 |
recombinase A; Provisional |
1-201 |
1.65e-164 |
|
recombinase A; Provisional
Pssm-ID: 236476 [Multi-domain] Cd Length: 349 Bit Score: 456.56 E-value: 1.65e-164
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385287421 1 VIEVYGPESSGKTTVALHAIAEVQKRGGQAAFVDAEHALDPKYAQNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDI 80
Cdd:PRK09354 62 IVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSGAVDL 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385287421 81 LVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGATNKSKTIVIFINQIREKIGIMFGNPETTPGGRALKFYSS 160
Cdd:PRK09354 142 IVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGNISKSNTTVIFINQIREKIGVMFGNPETTTGGNALKFYAS 221
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 385287421 161 VRLEVRRAETLKQGQDMVGNRTKIKVVKNKIAPPFKTAEVD 201
Cdd:PRK09354 222 VRLDIRRIGTIKDGDEVIGNRTKVKVVKNKVAPPFKQAEFD 262
|
|
| RecA |
COG0468 |
RecA/RadA recombinase [Replication, recombination and repair]; |
1-201 |
1.14e-160 |
|
RecA/RadA recombinase [Replication, recombination and repair];
Pssm-ID: 440236 [Multi-domain] Cd Length: 351 Bit Score: 446.92 E-value: 1.14e-160
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385287421 1 VIEVYGPESSGKTTVALHAIAEVQKRGGQAAFVDAEHALDPKYAQNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDI 80
Cdd:COG0468 65 IVEIYGPESSGKTTLALHAIAEAQKAGGIAAFIDAEHALDPEYAKKLGVDIDNLLVSQPDTGEQALEIAETLVRSGAVDL 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385287421 81 LVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGATNKSKTIVIFINQIREKIGIMFGNPETTPGGRALKFYSS 160
Cdd:COG0468 145 IVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGAISKSNTTVIFINQLREKIGVMFGNPETTTGGNALKFYAS 224
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 385287421 161 VRLEVRRAETLKQGQDMVGNRTKIKVVKNKIAPPFKTAEVD 201
Cdd:COG0468 225 VRLDIRRIGTIKDGDEVIGNRTRVKVVKNKVAPPFKEAEFD 265
|
|
| RecA |
cd00983 |
recombinase A; RecA is a bacterial enzyme which has roles in homologous recombination, DNA ... |
1-201 |
1.29e-149 |
|
recombinase A; RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Pssm-ID: 410863 [Multi-domain] Cd Length: 235 Bit Score: 414.26 E-value: 1.29e-149
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385287421 1 VIEVYGPESSGKTTVALHAIAEVQKRGGQAAFVDAEHALDPKYAQNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDI 80
Cdd:cd00983 26 IIEIYGPESSGKTTLALHAIAEAQKLGGTAAFIDAEHALDPEYAKKLGVDIDNLLVSQPDTGEQALEIADTLIRSGAVDL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385287421 81 LVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGATNKSKTIVIFINQIREKIGIMFGNPETTPGGRALKFYSS 160
Cdd:cd00983 106 IVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSLSKSKTTVIFINQLREKIGVMFGNPETTTGGNALKFYAS 185
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 385287421 161 VRLEVRRAETLKQGQDMVGNRTKIKVVKNKIAPPFKTAEVD 201
Cdd:cd00983 186 VRLDIRRIELIKEGEDVIGNRTKVKVVKNKVAPPFKQAEFD 226
|
|
| RecA |
pfam00154 |
recA bacterial DNA recombination protein; RecA is a DNA-dependent ATPase and functions in DNA ... |
1-201 |
4.66e-148 |
|
recA bacterial DNA recombination protein; RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyzes an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination.
Pssm-ID: 425488 [Multi-domain] Cd Length: 262 Bit Score: 411.41 E-value: 4.66e-148
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385287421 1 VIEVYGPESSGKTTVALHAIAEVQKRGGQAAFVDAEHALDPKYAQNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDI 80
Cdd:pfam00154 54 IIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADMLVRSGAIDL 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385287421 81 LVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGATNKSKTIVIFINQIREKIGIMFGNPETTPGGRALKFYSS 160
Cdd:pfam00154 134 IVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSISKSNTTVIFINQIREKIGVMFGNPETTTGGRALKFYAS 213
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 385287421 161 VRLEVRRAETLKQGQDMVGNRTKIKVVKNKIAPPFKTAEVD 201
Cdd:pfam00154 214 VRLDIRRIGQIKQGEEVIGNKTKVKVVKNKVAPPFKEAEFD 254
|
|
| tigrfam_recA |
TIGR02012 |
protein RecA; This model describes orthologs of the recA protein. RecA promotes hybridization ... |
1-201 |
2.56e-146 |
|
protein RecA; This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 162659 [Multi-domain] Cd Length: 321 Bit Score: 409.45 E-value: 2.56e-146
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385287421 1 VIEVYGPESSGKTTVALHAIAEVQKRGGQAAFVDAEHALDPKYAQNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDI 80
Cdd:TIGR02012 57 IIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRSGAVDI 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385287421 81 LVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGATNKSKTIVIFINQIREKIGIMFGNPETTPGGRALKFYSS 160
Cdd:TIGR02012 137 IVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFINQIREKIGVMFGNPETTTGGNALKFYAS 216
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 385287421 161 VRLEVRRAETLKQGQDMVGNRTKIKVVKNKIAPPFKTAEVD 201
Cdd:TIGR02012 217 VRLDIRRIGTVKQGEEVVGNRTKVKVVKNKVAPPFREAEFD 257
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
1-169 |
2.17e-11 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 59.31 E-value: 2.17e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385287421 1 VIEVYGPESSGKTTVALHAIAEVQKRGGQAAFVDAEHALDPKYAQNLGVNIDELLLSqpDTGEQALEIAEALVRSGAVDI 80
Cdd:smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKAS--GSGELRLRLALALARKLKPDV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385287421 81 LVVDSVAALVPKaeiegemgdshVGLQARLMSQALRKLSGATNKSKTIVIFINqirekigimfgNPETTPGGRALKFYSS 160
Cdd:smart00382 82 LILDEITSLLDA-----------EQEALLLLLEELRLLLLLKSEKNLTVILTT-----------NDEKDLGPALLRRRFD 139
|
....*....
gi 385287421 161 VRLEVRRAE 169
Cdd:smart00382 140 RRIVLLLIL 148
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| recA |
PRK09354 |
recombinase A; Provisional |
1-201 |
1.65e-164 |
|
recombinase A; Provisional
Pssm-ID: 236476 [Multi-domain] Cd Length: 349 Bit Score: 456.56 E-value: 1.65e-164
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385287421 1 VIEVYGPESSGKTTVALHAIAEVQKRGGQAAFVDAEHALDPKYAQNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDI 80
Cdd:PRK09354 62 IVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSGAVDL 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385287421 81 LVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGATNKSKTIVIFINQIREKIGIMFGNPETTPGGRALKFYSS 160
Cdd:PRK09354 142 IVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGNISKSNTTVIFINQIREKIGVMFGNPETTTGGNALKFYAS 221
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 385287421 161 VRLEVRRAETLKQGQDMVGNRTKIKVVKNKIAPPFKTAEVD 201
Cdd:PRK09354 222 VRLDIRRIGTIKDGDEVIGNRTKVKVVKNKVAPPFKQAEFD 262
|
|
| RecA |
COG0468 |
RecA/RadA recombinase [Replication, recombination and repair]; |
1-201 |
1.14e-160 |
|
RecA/RadA recombinase [Replication, recombination and repair];
Pssm-ID: 440236 [Multi-domain] Cd Length: 351 Bit Score: 446.92 E-value: 1.14e-160
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385287421 1 VIEVYGPESSGKTTVALHAIAEVQKRGGQAAFVDAEHALDPKYAQNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDI 80
Cdd:COG0468 65 IVEIYGPESSGKTTLALHAIAEAQKAGGIAAFIDAEHALDPEYAKKLGVDIDNLLVSQPDTGEQALEIAETLVRSGAVDL 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385287421 81 LVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGATNKSKTIVIFINQIREKIGIMFGNPETTPGGRALKFYSS 160
Cdd:COG0468 145 IVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGAISKSNTTVIFINQLREKIGVMFGNPETTTGGNALKFYAS 224
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 385287421 161 VRLEVRRAETLKQGQDMVGNRTKIKVVKNKIAPPFKTAEVD 201
Cdd:COG0468 225 VRLDIRRIGTIKDGDEVIGNRTRVKVVKNKVAPPFKEAEFD 265
|
|
| RecA |
cd00983 |
recombinase A; RecA is a bacterial enzyme which has roles in homologous recombination, DNA ... |
1-201 |
1.29e-149 |
|
recombinase A; RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Pssm-ID: 410863 [Multi-domain] Cd Length: 235 Bit Score: 414.26 E-value: 1.29e-149
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385287421 1 VIEVYGPESSGKTTVALHAIAEVQKRGGQAAFVDAEHALDPKYAQNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDI 80
Cdd:cd00983 26 IIEIYGPESSGKTTLALHAIAEAQKLGGTAAFIDAEHALDPEYAKKLGVDIDNLLVSQPDTGEQALEIADTLIRSGAVDL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385287421 81 LVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGATNKSKTIVIFINQIREKIGIMFGNPETTPGGRALKFYSS 160
Cdd:cd00983 106 IVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSLSKSKTTVIFINQLREKIGVMFGNPETTTGGNALKFYAS 185
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 385287421 161 VRLEVRRAETLKQGQDMVGNRTKIKVVKNKIAPPFKTAEVD 201
Cdd:cd00983 186 VRLDIRRIELIKEGEDVIGNRTKVKVVKNKVAPPFKQAEFD 226
|
|
| RecA |
pfam00154 |
recA bacterial DNA recombination protein; RecA is a DNA-dependent ATPase and functions in DNA ... |
1-201 |
4.66e-148 |
|
recA bacterial DNA recombination protein; RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyzes an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination.
Pssm-ID: 425488 [Multi-domain] Cd Length: 262 Bit Score: 411.41 E-value: 4.66e-148
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385287421 1 VIEVYGPESSGKTTVALHAIAEVQKRGGQAAFVDAEHALDPKYAQNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDI 80
Cdd:pfam00154 54 IIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADMLVRSGAIDL 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385287421 81 LVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGATNKSKTIVIFINQIREKIGIMFGNPETTPGGRALKFYSS 160
Cdd:pfam00154 134 IVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSISKSNTTVIFINQIREKIGVMFGNPETTTGGRALKFYAS 213
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 385287421 161 VRLEVRRAETLKQGQDMVGNRTKIKVVKNKIAPPFKTAEVD 201
Cdd:pfam00154 214 VRLDIRRIGQIKQGEEVIGNKTKVKVVKNKVAPPFKEAEFD 254
|
|
| tigrfam_recA |
TIGR02012 |
protein RecA; This model describes orthologs of the recA protein. RecA promotes hybridization ... |
1-201 |
2.56e-146 |
|
protein RecA; This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 162659 [Multi-domain] Cd Length: 321 Bit Score: 409.45 E-value: 2.56e-146
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385287421 1 VIEVYGPESSGKTTVALHAIAEVQKRGGQAAFVDAEHALDPKYAQNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDI 80
Cdd:TIGR02012 57 IIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRSGAVDI 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385287421 81 LVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGATNKSKTIVIFINQIREKIGIMFGNPETTPGGRALKFYSS 160
Cdd:TIGR02012 137 IVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFINQIREKIGVMFGNPETTTGGNALKFYAS 216
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 385287421 161 VRLEVRRAETLKQGQDMVGNRTKIKVVKNKIAPPFKTAEVD 201
Cdd:TIGR02012 217 VRLDIRRIGTVKQGEEVVGNRTKVKVVKNKVAPPFREAEFD 257
|
|
| recA |
PRK09519 |
intein-containing recombinase RecA; |
1-190 |
1.50e-101 |
|
intein-containing recombinase RecA;
Pssm-ID: 77219 [Multi-domain] Cd Length: 790 Bit Score: 310.10 E-value: 1.50e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385287421 1 VIEVYGPESSGKTTVALHAIAEVQKRGGQAAFVDAEHALDPKYAQNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDI 80
Cdd:PRK09519 62 VIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRSGALDI 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385287421 81 LVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGATNKSKTIVIFINQIREKIGIMFGNPETTPGGRALKFYSS 160
Cdd:PRK09519 142 VVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYAS 221
|
170 180 190
....*....|....*....|....*....|
gi 385287421 161 VRLEVRRAETLKQGQDMVGNRTKIKVVKNK 190
Cdd:PRK09519 222 VRMDVRRVETLKDGTNAVGNRTRVKVVKNK 251
|
|
| RecA-like |
cd01393 |
RecA family; RecA is a bacterial enzyme which has roles in homologous recombination, DNA ... |
1-167 |
2.06e-50 |
|
RecA family; RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs RadA and RadB.
Pssm-ID: 410881 [Multi-domain] Cd Length: 185 Bit Score: 161.37 E-value: 2.06e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385287421 1 VIEVYGPESSGKTTVALHAIAEVQKRGGQAAFVDAEHALDPKYAQ-----------NLGVNIDELLLSQPDTGEQALEIA 69
Cdd:cd01393 3 ITEIYGPPGSGKTQLALQLAANALLLGGGVVWIDTEGAFPPSRLVqileaspsselELAEALSRLLYFRPPDTLAHLLAL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385287421 70 EALVRSGA----VDILVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGATNKSKTIVIFINQIREKIGIMFG- 144
Cdd:cd01393 83 DSLPESLFpppnTSLVVVDSVSALFRKAFPRGGDGDSSSSLRARLLSQLARALQKLAAQFNLAVVVTNQVTTKIRGGSGa 162
|
170 180
....*....|....*....|...
gi 385287421 145 NPETTPGGRALKFYSSVRLEVRR 167
Cdd:cd01393 163 SLVPPALGNTWEHSVSTRLLLYR 185
|
|
| archRadB |
cd01394 |
archaeal RadB; The archaeal protein RadB shares similarity RadA, the archaeal functional ... |
1-172 |
1.13e-15 |
|
archaeal RadB; The archaeal protein RadB shares similarity RadA, the archaeal functional homologue to the bacterial RecA. The precise function of RadB is unclear.
Pssm-ID: 410882 [Multi-domain] Cd Length: 216 Bit Score: 72.35 E-value: 1.13e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385287421 1 VIEVYGPESSGKTTVALHAIAEVQKRGGQAAFVDAEhALDP-KYAQNLGVNIDELL----LSQP-DTGEQALEI--AEAL 72
Cdd:cd01394 21 ITQIYGPPGSGKTNICLQLAVEAAKQGKKVVYIDTE-GLSPeRFQQIAGERFESIAsniiVFEPySFDEQGVAIqeAEKL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385287421 73 VRSGAVDILVVDSVAALVpKAEiegEMGDShvGLQARLMSQaLRKLSGATNKSKTIVIFINQIREKigimFGNPETTP-G 151
Cdd:cd01394 100 LKSDKVDLVVVDSATALY-RLE---LGDDS--EANRELSRQ-MSKLLSIARKYDIPVVITNQVYSD----IDDDRLKPvG 168
|
170 180
....*....|....*....|.
gi 385287421 152 GRALKFYSSVRLEVRRAETLK 172
Cdd:cd01394 169 GTLLEHWSKAIIRLEKSPPGL 189
|
|
| recomb_radB |
TIGR02237 |
DNA repair and recombination protein RadB; This family consists exclusively of archaeal RadB ... |
1-191 |
3.23e-13 |
|
DNA repair and recombination protein RadB; This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Pssm-ID: 274047 [Multi-domain] Cd Length: 209 Bit Score: 65.52 E-value: 3.23e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385287421 1 VIEVYGPESSGKTTVALHAIAEVQKRGGQAAFVDAEhALDPKYAQNLGVNIDELLLSQP--------DTGEQALEIAEAL 72
Cdd:TIGR02237 14 ITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTE-GLSPERFKQIAEDRPERALSNFivfevfdfDEQGVAIQKTSKF 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385287421 73 VRSGAVDILVVDSVAALVpKAEIEGEMGDSHVGLQARlmsqaLRKLSGATNKSKTIVIFINQIREKIgimfGNPETTP-G 151
Cdd:TIGR02237 93 IDRDSASLVVVDSFTALY-RLELSDDRISRNRELARQ-----LTLLLSLARKKNLAVVITNQVYTDV----NNGTLRPlG 162
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 385287421 152 GRALKFYSS--VRLE----VRRAETLKQGQDMVGNRTKIKVVKNKI 191
Cdd:TIGR02237 163 GHLLEHWSKviLRLEkfrgRRLATLEKHRSRPEGESVYFRITDDGI 208
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
1-169 |
2.17e-11 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 59.31 E-value: 2.17e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385287421 1 VIEVYGPESSGKTTVALHAIAEVQKRGGQAAFVDAEHALDPKYAQNLGVNIDELLLSqpDTGEQALEIAEALVRSGAVDI 80
Cdd:smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKAS--GSGELRLRLALALARKLKPDV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385287421 81 LVVDSVAALVPKaeiegemgdshVGLQARLMSQALRKLSGATNKSKTIVIFINqirekigimfgNPETTPGGRALKFYSS 160
Cdd:smart00382 82 LILDEITSLLDA-----------EQEALLLLLEELRLLLLLKSEKNLTVILTT-----------NDEKDLGPALLRRRFD 139
|
....*....
gi 385287421 161 VRLEVRRAE 169
Cdd:smart00382 140 RRIVLLLIL 148
|
|
| radB |
PRK09361 |
DNA repair and recombination protein RadB; Provisional |
1-168 |
6.38e-11 |
|
DNA repair and recombination protein RadB; Provisional
Pssm-ID: 236482 [Multi-domain] Cd Length: 225 Bit Score: 59.49 E-value: 6.38e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385287421 1 VIEVYGPESSGKTTVALHAIAEVQKRGGQAAFVDAEhALDP-KYAQNLGVNIDELL----LSQP-DTGEQ--ALEIAEAL 72
Cdd:PRK09361 25 ITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE-GLSPeRFKQIAGEDFEELLsniiIFEPsSFEEQseAIRKAEKL 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385287421 73 VRSGaVDILVVDSVAALVpKAEIEGEMGDShvGLQARLMSQaLRKLSGATNKSKTIVIFINQIREKIgimfGNPETTP-G 151
Cdd:PRK09361 104 AKEN-VGLIVLDSATSLY-RLELEDEEDNS--KLNRELGRQ-LTHLLKLARKHDLAVVITNQVYSDI----DSDGLRPlG 174
|
170 180
....*....|....*....|....
gi 385287421 152 GRALKFYSS--VRLE-----VRRA 168
Cdd:PRK09361 175 GHTLEHWSKtiLRLEkfrngKRRA 198
|
|
| Rad51_DMC1_archRadA |
cd01123 |
recombinase Rad51, DMC1, and archaeal RadA; This group of recombinases includes the eukaryotic ... |
1-167 |
2.36e-06 |
|
recombinase Rad51, DMC1, and archaeal RadA; This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal protein RadA. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Pssm-ID: 410868 [Multi-domain] Cd Length: 234 Bit Score: 46.37 E-value: 2.36e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385287421 1 VIEVYGPESSGKTTVAlHAIA-------EVQKRGGQAAFVDAEHALDPK----YAQNLGVNIDELLLS-------QPDTG 62
Cdd:cd01123 21 ITEMFGEFRTGKTQLC-HTLAvtcqlpiDRGGGEGKAIYIDTEGTFRPErlraIAQRFGLDPDDVLDNvayarafNSDHQ 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385287421 63 EQALEIAEALVRSGAVDILVVDSVAALVpKAEIEGEmGDshvgLQARLM--SQALRKLSGATNKSKTIVIFINQIREKIG 140
Cdd:cd01123 100 TQLLDQAAAMMVESRFKLLIVDSATALY-RTDYSGR-GE----LSARQMhlAKFLRMLQRLADEFGVAVVVTNQVVAQVD 173
|
170 180 190
....*....|....*....|....*....|
gi 385287421 141 ---IMFGNPETTPGGRALKFYSSVRLEVRR 167
Cdd:cd01123 174 gamMFAADPKKPIGGNILAHASTTRLYLRK 203
|
|
| archRadA |
cd19515 |
archaeal recombinase Rad51/RadA; This group includes the archaeal protein RadA which is a ... |
1-167 |
2.52e-06 |
|
archaeal recombinase Rad51/RadA; This group includes the archaeal protein RadA which is a homolog of Rad51. RAD51 recombinase plays an essential role in DNA repair by homologous recombination (HR)
Pssm-ID: 410923 [Multi-domain] Cd Length: 233 Bit Score: 46.59 E-value: 2.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385287421 1 VIEVYGPESSGKTTVAlHAIA-EVQKR------GGQAAFVDAEHALDPK----YAQNLGVNIDELL-----LSQPDTGEQ 64
Cdd:cd19515 21 ITEVFGEFGSGKTQLC-HQLAvNVQLPpeegglNGKAVYIDTENTFRPErimqMAKALGLDPDEVLdniyvARAYNSNHQ 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385287421 65 AL--EIAEALVRSG-AVDILVVDSVAALVpKAEIegeMGDSHVGLQARLMSQALRKLSGATNKSKTIVIFINQIREKIGI 141
Cdd:cd19515 100 MLlvEKAEDLIKEGnNIKLLIVDSLTSHF-RAEY---VGRGTLAERQQKLNKHLHDLHRLADLYNIAVLVTNQVMAKPDA 175
|
170 180
....*....|....*....|....*.
gi 385287421 142 MFGNPETTPGGRALKFYSSVRLEVRR 167
Cdd:cd19515 176 FFGDPTQAIGGHILGHAATFRVYLRK 201
|
|
| XRCC2 |
cd19490 |
XRCC2 recombinase; XRCC2 (X-ray repair complementing defective repair in Chinese hamster cells ... |
1-154 |
3.34e-06 |
|
XRCC2 recombinase; XRCC2 (X-ray repair complementing defective repair in Chinese hamster cells 2) recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. XRCC2, together with the other RAD51 paralogs, RAD51B, RAD51C, RAD51D, and XRCC3, helps recruit RAD51 to the break site.
Pssm-ID: 410898 [Multi-domain] Cd Length: 226 Bit Score: 45.80 E-value: 3.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385287421 1 VIEVYGPESSGKTTVALHAIA---------EVQKRGGQAA--FVDAEHALDP----KYAQNLGVNIDELLLSQPDTGEQA 65
Cdd:cd19490 3 VIEITGPSGSGKTELLYHLAArcilpsswgGVPLGGLEAAvvFIDTDGRFDIlrlrSILEARIRAAIQAANSSDDEEDVE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385287421 66 LEIAEALVR----------------------------SGAVDILVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRK 117
Cdd:cd19490 83 EIARECLQRlhifrchsslqllatllslenyllslsaNPELGLLLIDSISAFYWQDRFSAELARAAPLLQEAALRAILRE 162
|
170 180 190
....*....|....*....|....*....|....*..
gi 385287421 118 LSGATNKSKTIVIFINQirekiGIMFGNPETTPGGRA 154
Cdd:cd19490 163 LRRLRRRFQLVVIATKQ-----ALFPGKSASTDNPAA 194
|
|
| radA |
PRK04301 |
DNA repair and recombination protein RadA; Validated |
1-168 |
9.04e-06 |
|
DNA repair and recombination protein RadA; Validated
Pssm-ID: 235273 [Multi-domain] Cd Length: 317 Bit Score: 45.25 E-value: 9.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385287421 1 VIEVYGPESSGKTTVALHAIAEVQKR------GGQAAFVDAEHALDP----KYAQNLGVNIDELL-----LSQPDTGEQA 65
Cdd:PRK04301 104 ITEFYGEFGSGKTQICHQLAVNVQLPeekgglEGKAVYIDTEGTFRPerieQMAEALGLDPDEVLdnihvARAYNSDHQM 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385287421 66 L--EIAEALVRSG-AVDILVVDSVAALVpKAEiegemgdsHVGL------QARLMSQ--ALRKLSGATNkskTIVIFINQ 134
Cdd:PRK04301 184 LlaEKAEELIKEGeNIKLVIVDSLTAHF-RAE--------YVGRgnlaerQQKLNKHlhDLLRLADLYN---AAVVVTNQ 251
|
170 180 190
....*....|....*....|....*....|....
gi 385287421 135 IREKIGIMFGNPETTPGGRALKFYSSVRLEVRRA 168
Cdd:PRK04301 252 VMARPDAFFGDPTQPIGGHILGHTATFRIYLRKS 285
|
|
| RecA-like_superfamily |
cd01120 |
RecA-like_NTPases; RecA-like NTPases. This superfamily includes the NTP binding domain of F1 ... |
2-156 |
1.69e-05 |
|
RecA-like_NTPases; RecA-like NTPases. This superfamily includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410865 [Multi-domain] Cd Length: 119 Bit Score: 42.49 E-value: 1.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385287421 2 IEVYGPESSGKTTVALHAIAEVQKRGGQAAFVDAehaldpkyaqnlgvnidelllsqPDTgeqALEIAEALVRSGAVDIL 81
Cdd:cd01120 1 ILITGPPGSGKTTLLLQFAEQALLSDEPVIFISF-----------------------LDT---ILEAIEDLIEEKKLDII 54
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 385287421 82 VVDSVAALVPKAEiegemgdshvGLQARLMSQALRKLSGATNKSKTIVIFINQIREKIGIMFGNPETTPGGRALK 156
Cdd:cd01120 55 IIDSLSSLARASQ----------GDRSSELLEDLAKLLRAARNTGITVIATIHSDKFDIDRGGSSNDERLLKSLR 119
|
|
| Rad51 |
pfam08423 |
Rad51; Rad51 is a DNA repair and recombination protein and is a homolog of the bacterial ... |
3-167 |
2.01e-05 |
|
Rad51; Rad51 is a DNA repair and recombination protein and is a homolog of the bacterial ATPase RecA protein.
Pssm-ID: 462471 [Multi-domain] Cd Length: 255 Bit Score: 43.83 E-value: 2.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385287421 3 EVYGPESSGKT----TVALHAIAEVQKRG--GQAAFVDAEHALDPK----YAQNLGVNIDELLLSQP-------DTGEQA 65
Cdd:pfam08423 41 EIFGEFRTGKTqlchTLCVTCQLPLEMGGgeGKALYIDTEGTFRPErlvaIAERYGLDPEDVLDNVAyaraynsEHQMQL 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385287421 66 LEIAEALVRSGAVDILVVDSVAALVpKAEIEGEmGDshvgLQARLM--SQALRKLSGATNKSKTIVIFINQIREKIG--- 140
Cdd:pfam08423 121 LQQAAAMMSESRFALLIVDSATALY-RTDFSGR-GE----LAERQQhlAKFLRTLQRLADEFGVAVVITNQVVAQVDgaa 194
|
170 180
....*....|....*....|....*...
gi 385287421 141 IMF-GNPETTPGGRALKFYSSVRLEVRR 167
Cdd:pfam08423 195 GMFsGDPKKPIGGHIMAHASTTRLSLRK 222
|
|
| Rad51B |
cd19493 |
RAD51B recombinase; RAD51B recombinase, a RAD51 paralog, plays an important role in DNA repair ... |
1-140 |
3.85e-05 |
|
RAD51B recombinase; RAD51B recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51B, together with the other RAD51 paralogs, RAD51C, RAD51D, XRCC3, and XRCC2, helps recruit RAD51 to the break site.
Pssm-ID: 410901 [Multi-domain] Cd Length: 222 Bit Score: 42.69 E-value: 3.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385287421 1 VIEVYGPESSGKTTVALH----AIAEVQKRGGQAA--FVDAEHALDPK-------------YAQNLGVNIDELLLSQ--- 58
Cdd:cd19493 13 ITEITGASGSGKTQFALTlassAAMPARKGGLDGGvlYIDTESKFSAErlaeiaearfpeaFSGFMEENERAEEMLKrva 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385287421 59 ---PDTGEQALEIAEAL---VRSGAVDILVVDSVAALVPKA--EIEGEMGDSHVGLqARLMSqALRKLSgatNKSKTIVI 130
Cdd:cd19493 93 vvrVTTLAQLLERLPNLeehILSSGVRLVVIDSIAALVRREfgGSDGEVTERHNAL-AREAS-SLKRLA---EEFRIAVL 167
|
170
....*....|
gi 385287421 131 FINQIREKIG 140
Cdd:cd19493 168 VTNQATTHFG 177
|
|
| RAD55 |
COG0467 |
RecA-superfamily ATPase, KaiC/GvpD/RAD55 family [Signal transduction mechanisms]; |
4-137 |
1.39e-04 |
|
RecA-superfamily ATPase, KaiC/GvpD/RAD55 family [Signal transduction mechanisms];
Pssm-ID: 440235 [Multi-domain] Cd Length: 221 Bit Score: 41.05 E-value: 1.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385287421 4 VYGPESSGKTTVALHAIAEVQKRGGQAAFVDAEHALDP--KYAQNLGVNIDELL-------------LSQPDTGEQALEI 68
Cdd:COG0467 25 LSGPPGTGKTTLALQFLAEGLRRGEKGLYVSFEESPEQllRRAESLGLDLEEYIesgllriidlspeELGLDLEELLARL 104
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 385287421 69 AEALVRSGAvDILVVDSVAALVpkAEIEGEMgdshvglQARLMsqaLRKLSGATNKSKTIVIFINQIRE 137
Cdd:COG0467 105 REAVEEFGA-KRVVIDSLSGLL--LALPDPE-------RLREF---LHRLLRYLKKRGVTTLLTSETGG 160
|
|
| DEXHc_RecG |
cd17992 |
DEXH/Q-box helicase domain of RecG; ATP-dependent DNA helicase RecG plays a critical role in ... |
10-82 |
2.81e-04 |
|
DEXH/Q-box helicase domain of RecG; ATP-dependent DNA helicase RecG plays a critical role in recombination and DNA repair. It is a member of the DEAD-like helicases superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350750 [Multi-domain] Cd Length: 225 Bit Score: 40.21 E-value: 2.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385287421 10 SGKTTVALHAIAEVQKRGGQAAF-----VDAE-HALD-PKYAQNLGVNIDelLLSQPDTGEQALEIAEALvRSGAVDILV 82
Cdd:cd17992 77 SGKTVVAALAMLAAVENGYQVALmapteILAEqHYDSlKKLLEPLGIRVA--LLTGSTKAKEKREILEKI-ASGEIDIVI 153
|
|
| DEXHc_priA |
cd17929 |
DEXH-box helicase domain of PriA; PriA, also known as replication factor Y or primosomal ... |
4-41 |
5.13e-04 |
|
DEXH-box helicase domain of PriA; PriA, also known as replication factor Y or primosomal protein N', is a 3'-->5' superfamily 2 DNA helicase that acts to remodel stalled replication forks and as a specificity factor for origin-independent assembly of a new replisome at the stalled fork. PriA is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350687 [Multi-domain] Cd Length: 178 Bit Score: 39.11 E-value: 5.13e-04
10 20 30
....*....|....*....|....*....|....*...
gi 385287421 4 VYGPESSGKTTVALHAIAEVQKRGGQAAFVDAEHALDP 41
Cdd:cd17929 20 LHGVTGSGKTEVYIELIEKVLAKGKQVLVLVPEISLTP 57
|
|
| XRCC3 |
cd19491 |
XRCC3 recombinase; XRCC3 (X-ray repair complementing defective repair in Chinese hamster cells ... |
1-140 |
1.58e-03 |
|
XRCC3 recombinase; XRCC3 (X-ray repair complementing defective repair in Chinese hamster cells 3) recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. XRCC3, together with the other RAD51 paralogs, RAD51B, RAD51C, RAD51D, and XRCC2, helps recruit RAD51 to the break site.
Pssm-ID: 410899 [Multi-domain] Cd Length: 250 Bit Score: 38.43 E-value: 1.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385287421 1 VIEVYGPESSGKTTVALHAIAEVQKR------GGQAAFVDAEHAL----------------DPKYAQNLGVNIDELLLSQ 58
Cdd:cd19491 14 ITEIAGESGAGKTQLCLQLALTVQLPrelgglGGGAVYICTESSFpskrlqqlasslpkryHLEKAKNFLDNIFVEHVAD 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385287421 59 PDTGEQAL-EIAEALVRSGAVDILVVDSVAALVpKAEIEGEMGDShvGLQARLMSQALRKLSGATNKSKTIVIFINQIRE 137
Cdd:cd19491 94 LETLEHCLnYQLPALLERGPIRLVVIDSIAALF-RSEFDTSRSDL--VERAKYLRRLADHLKRLADKYNLAVVVVNQVTD 170
|
...
gi 385287421 138 KIG 140
Cdd:cd19491 171 RFD 173
|
|
| RecG |
COG1200 |
RecG-like helicase [Replication, recombination and repair]; |
10-82 |
2.85e-03 |
|
RecG-like helicase [Replication, recombination and repair];
Pssm-ID: 440813 [Multi-domain] Cd Length: 684 Bit Score: 38.11 E-value: 2.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385287421 10 SGKTTVALHAIAEVQKRGGQAAF-----VDAE-HA--LDpKYAQNLGVNIdELLLSQpDTGEQALEIAEALvRSGAVDIL 81
Cdd:COG1200 291 SGKTVVALLAMLAAVEAGYQAALmapteILAEqHYrsLS-KLLEPLGIRV-ALLTGS-TKAKERREILAAL-ASGEADIV 366
|
.
gi 385287421 82 V 82
Cdd:COG1200 367 V 367
|
|
| AAA_22 |
pfam13401 |
AAA domain; |
1-93 |
4.89e-03 |
|
AAA domain;
Pssm-ID: 379165 [Multi-domain] Cd Length: 129 Bit Score: 35.78 E-value: 4.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385287421 1 VIEVYGPESSGKTTVALHAIAEVQKRGGQAAFVDAEHALDPK-YAQNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVD 79
Cdd:pfam13401 7 ILVLTGESGTGKTTLLRRLLEQLPEVRDSVVFVDLPSGTSPKdLLRALLRALGLPLSGRLSKEELLAALQQLLLALAVAV 86
|
90
....*....|....
gi 385287421 80 ILVVDSVAALVPKA 93
Cdd:pfam13401 87 VLIIDEAQHLSLEA 100
|
|
| PRK10917 |
PRK10917 |
ATP-dependent DNA helicase RecG; Provisional |
10-82 |
8.56e-03 |
|
ATP-dependent DNA helicase RecG; Provisional
Pssm-ID: 236794 [Multi-domain] Cd Length: 681 Bit Score: 36.67 E-value: 8.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385287421 10 SGKTTVALHAIAEVQKRGGQAAF-----VDAE-HALD-PKYAQNLGVNIDelLLSQPDTGEQALEIAEALvRSGAVDILV 82
Cdd:PRK10917 293 SGKTVVAALAALAAIEAGYQAALmapteILAEqHYENlKKLLEPLGIRVA--LLTGSLKGKERREILEAI-ASGEADIVI 369
|
|
| RepA |
COG3598 |
RecA-family ATPase [Replication, recombination and repair]; |
4-132 |
9.97e-03 |
|
RecA-family ATPase [Replication, recombination and repair];
Pssm-ID: 442817 [Multi-domain] Cd Length: 313 Bit Score: 36.03 E-value: 9.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 385287421 4 VYGPESSGKTTVALHAIAEV---------QKRGGQAAFVDAE---HALDP---KYAQNLGVNIDEL-----LLSQPDTGE 63
Cdd:COG3598 18 LAGPPGTGKSFLALQLAAAVaaggpwlgrRVPPGKVLYLAAEddrGELRRrlkALGADLGLPFADLdgrlrLLSLAGDLD 97
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 385287421 64 --QALEIAEALVRSGAVDILVVDSVAALVPkaeiegemGDSHVGLQARLMSQALRKLSGATNKSktiVIFI 132
Cdd:COG3598 98 dtDDLEALERAIEEEGPDLVVIDPLARVFG--------GDENDAEEMRAFLNPLDRLAERTGAA---VLLV 157
|
|
| |
