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Conserved domains on  [gi|392281926|gb|AFM53660|]
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ATPase 6 (mitochondrion) [Pseudobagrus sp. 1 CCL-2012]

Protein Classification

ATP synthase F0 subunit 6( domain architecture ID 10009577)

ATP synthase F0 subunit 6 is part of the mitochondrial membrane ATP synthase (F1F0 ATP synthase or Complex V), which produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ATP6 MTH00132
ATP synthase F0 subunit 6; Provisional
 1-227 6.80e-128

ATP synthase F0 subunit 6; Provisional


:

Pssm-ID: 177190  Cd Length: 227  Bit Score: 360.34  E-value: 6.80e-128
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392281926   1 MALNLFDQFMSPTHLGIPLIAIALTLPWILVPAPTNRYQNNRLVSLQSWFIKTFTQQLLLPINQAGHKWAMILASLMIFI 80
Cdd:MTH00132   1 MTLSFFDQFMSPTYLGIPLIALALTLPWILFPTPTSRWLNNRLLTLQGWFINRFTQQLLLPLNVGGHKWALLLTSLMLFL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392281926  81 LTLNVLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGLRNQPTAALGHLLPEGTPVPLIPVLIIIETISLFIRPLALGVR 160
Cdd:MTH00132  81 ITLNMLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGMRNQPTHALGHLLPEGTPTPLIPVLIIIETISLFIRPLALGVR 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 392281926 161 LTANLTAGHLLIQLISTATITLMPMMTTVATLTAILLVLLTLLEVAVAVIQAYVFVLLLSLYLQENV 227
Cdd:MTH00132 161 LTANLTAGHLLIQLIATAAFVLLPLMPTVAILTATLLFLLTLLEVAVAMIQAYVFVLLLSLYLQENV 227
 
Name Accession Description Interval E-value
ATP6 MTH00132
ATP synthase F0 subunit 6; Provisional
 1-227 6.80e-128

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177190  Cd Length: 227  Bit Score: 360.34  E-value: 6.80e-128
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392281926   1 MALNLFDQFMSPTHLGIPLIAIALTLPWILVPAPTNRYQNNRLVSLQSWFIKTFTQQLLLPINQAGHKWAMILASLMIFI 80
Cdd:MTH00132   1 MTLSFFDQFMSPTYLGIPLIALALTLPWILFPTPTSRWLNNRLLTLQGWFINRFTQQLLLPLNVGGHKWALLLTSLMLFL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392281926  81 LTLNVLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGLRNQPTAALGHLLPEGTPVPLIPVLIIIETISLFIRPLALGVR 160
Cdd:MTH00132  81 ITLNMLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGMRNQPTHALGHLLPEGTPTPLIPVLIIIETISLFIRPLALGVR 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 392281926 161 LTANLTAGHLLIQLISTATITLMPMMTTVATLTAILLVLLTLLEVAVAVIQAYVFVLLLSLYLQENV 227
Cdd:MTH00132 161 LTANLTAGHLLIQLIATAAFVLLPLMPTVAILTATLLFLLTLLEVAVAMIQAYVFVLLLSLYLQENV 227
ATP_synt_6_or_A TIGR01131
ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be ...
 5-227 5.68e-50

ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be designated ATP synthase, F0 subunit A; eukaryotic (chloroplast and mitochondrial) forms should be designated ATP synthase, F0 subunit 6. The F1/F0 ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Individual subunits in each of these clusters are named differently in prokaryotes and in organelles e.g., mitochondria and chloroplast. The bacterial equivalent of subunit 6 is named subunit 'A'. It has been shown that proton is conducted though this subunit. Typically, deprotonation and reprotonation of the acidic amino acid side-chains are implicated in the process. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273458  Cd Length: 226  Bit Score: 162.38  E-value: 5.68e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392281926    5 LFDQFMSP----THLGIPLIAIALTLPWILVP-APTNRYQNNRLVSLQSWFIKTFTQQLLLPINQAGHKWAMILASLMIF 79
Cdd:TIGR01131   1 LFSQFDISpitlFSLTLLSLILLLSLLIFLISsSLSRWLIPSRWQNLMESIYEFVLSIVKSQIGGKKGKFFPLIFTLFLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392281926   80 ILTLNVLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGLRNQPTAALGHLLPEGTPVPLIPVLIIIETISLFIRPLALGV 159
Cdd:TIGR01131  81 ILISNLLGLIPYSFTPTSHLSFTLGLALPLWLGLTISGFRKHPKGFLAHLVPSGTPLPLIPFLVIIETISYLARPISLSV 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 392281926  160 RLTANLTAGHLLIQLISTATITLMPMMttVATLTAILLVLLTLLEVAVAVIQAYVFVLLLSLYLQENV 227
Cdd:TIGR01131 161 RLFANISAGHLLLTLLSGLLFSLMSSA--IFALLLLILVALIILEIFVAFIQAYVFTLLTCLYLNDAL 226
ATP-synt_Fo_a_6 cd00310
ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms ...
 66-224 1.15e-38

ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms are designated as ATP synthase, Fo complex, subunit a; eukaryotic (chloroplast and mitochondrial) forms are designated as ATP synthase, Fo complex, subunit 6. The F-ATP synthases (also called FoF1-ATPases) consist of two structural domains: F1 (factor one) complex containing the soluble catalytic core, and Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. F-ATP synthase has also been found in the archaea Methanosarcina acetivorans. F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis.


Pssm-ID: 349411 [Multi-domain]  Cd Length: 156  Bit Score: 130.98  E-value: 1.15e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392281926  66 GHKWAMILASLMIFILTLNVLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGLRNQPTAALGHLLPEGTPVPLIPVLIII 145
Cdd:cd00310    1 GKKYLPLLGTLFLFILFSNLLGLIPYSFTPTSHLNVTLALALIVFLGVHILGIKKHGLGFFLHFLPPGTPLPLAPLMVPI 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 392281926 146 ETISLFIRPLALGVRLTANLTAGHLLIQLISTATITlmpMMTTVATLTAILLVLLTLLEVAVAVIQAYVFVLLLSLYLQ 224
Cdd:cd00310   81 ELISELIRPLSLSVRLFANMFAGHLLLALLSGLVPS---LLSSVGLLPLLLPVALTLLELFVAFIQAYVFTLLTAVYIS 156
ATP-synt_A pfam00119
ATP synthase A chain;
19-224 4.17e-33

ATP synthase A chain;


Pssm-ID: 459679 [Multi-domain]  Cd Length: 216  Bit Score: 118.75  E-value: 4.17e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392281926   19 LIAIALTLPWILVPAPTNRYQNNRLVSLQSWFIKTFTQQLLLPI-NQAGHKWAMILASLMIFILTLNVLGLL---PYTFT 94
Cdd:pfam00119   6 IVALILLLFLLLATRKTKKLVPGRLQNFVEMLVEFVDNIVKDNIgKKKGRKFFPLLLTLFFFILVSNLLGLIpksPGGFT 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392281926   95 PTTQLSLNMGLAVPLWLATVIIGLRNQPTAA-LGHLLPEGTPVPLIPVLIIIETISLFIRPLALGVRLTANLTAGHLLIQ 173
Cdd:pfam00119  86 VTADINVTLALALIVFLLVHYYGIKKHGLGGyFKKLFVPPVPLPLVPLLLPIEIISEFARPVSLSLRLFGNMLAGHLLLL 165

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 392281926  174 LISTATITLMPMMTTVATLTAILLVLLTLLEVAVAVIQAYVFVLLLSLYLQ 224
Cdd:pfam00119 166 LLAGLIFALLSAGFLLGVIPPLLGVAWTLFELLVAFIQAYVFTMLTAVYIS 216
AtpB COG0356
FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP ...
 61-225 6.72e-23

FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit a is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440125 [Multi-domain]  Cd Length: 212  Bit Score: 92.06  E-value: 6.72e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392281926  61 PINQAGHKWAMILASLMIFILTLNVLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGLRNQPTAA-LGHLLPEGTPvPLI 139
Cdd:COG0356   49 TIGKKGRKFAPLLLTLFLFILVSNLLGLIPGLFPPTADINVTLALALIVFVLVHYYGIKKKGLGGyLKHLFFPPFP-WLA 127

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392281926 140 PVLIIIETISLFIRPLALGVRLTANLTAGHLLIqlistATITLMPMMTTVATLTAILLVLLTLLEVAVAVIQAYVFVLLL 219
Cdd:COG0356  128 PLMLPIEIISELARPLSLSLRLFGNMFAGHIIL-----LLLAGLAPFLLLGVLSLLLPVAWTAFELLVGFLQAYIFTMLT 202


                 ....*.
gi 392281926 220 SLYLQE 225
Cdd:COG0356  203 AVYISL 208
 
Name Accession Description Interval E-value
ATP6 MTH00132
ATP synthase F0 subunit 6; Provisional
 1-227 6.80e-128

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177190  Cd Length: 227  Bit Score: 360.34  E-value: 6.80e-128
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392281926   1 MALNLFDQFMSPTHLGIPLIAIALTLPWILVPAPTNRYQNNRLVSLQSWFIKTFTQQLLLPINQAGHKWAMILASLMIFI 80
Cdd:MTH00132   1 MTLSFFDQFMSPTYLGIPLIALALTLPWILFPTPTSRWLNNRLLTLQGWFINRFTQQLLLPLNVGGHKWALLLTSLMLFL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392281926  81 LTLNVLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGLRNQPTAALGHLLPEGTPVPLIPVLIIIETISLFIRPLALGVR 160
Cdd:MTH00132  81 ITLNMLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGMRNQPTHALGHLLPEGTPTPLIPVLIIIETISLFIRPLALGVR 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 392281926 161 LTANLTAGHLLIQLISTATITLMPMMTTVATLTAILLVLLTLLEVAVAVIQAYVFVLLLSLYLQENV 227
Cdd:MTH00132 161 LTANLTAGHLLIQLIATAAFVLLPLMPTVAILTATLLFLLTLLEVAVAMIQAYVFVLLLSLYLQENV 227
ATP6 MTH00073
ATP synthase F0 subunit 6; Provisional
 1-227 5.74e-113

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177144  Cd Length: 227  Bit Score: 322.69  E-value: 5.74e-113
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392281926   1 MALNLFDQFMSPTHLGIPLIAIALTLPWILVPAPTNRYQNNRLVSLQSWFIKTFTQQLLLPINQAGHKWAMILASLMIFI 80
Cdd:MTH00073   1 MNLSFFDQFLSPTLLGIPLIMLAMLLPWLLFPTPTNKWLNNRLSTLQIWFLQNFTKQLMLPLNTPGHKWALILTSLMVFL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392281926  81 LTLNVLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGLRNQPTAALGHLLPEGTPVPLIPVLIIIETISLFIRPLALGVR 160
Cdd:MTH00073  81 ITMNLLGLLPYTFTPTTQLSLNLGLAVPLWLATVLIGLRNQPTASLGHLLPEGTPTLLIPILIIIETISLFIRPLALGVR 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 392281926 161 LTANLTAGHLLIQLISTATITLMPMMTTVATLTAILLVLLTLLEVAVAVIQAYVFVLLLSLYLQENV 227
Cdd:MTH00073 161 LTANLTAGHLLIQLISTATLVLLPLMPTVSILTMIVLFLLTLLEIAVAMIQAYVFVLLLSLYLQENV 227
ATP6 MTH00120
ATP synthase F0 subunit 6; Provisional
 1-227 7.49e-104

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177181  Cd Length: 227  Bit Score: 299.43  E-value: 7.49e-104
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392281926   1 MALNLFDQFMSPTHLGIPLIAIALTLPWILVPAPTNRYQNNRLVSLQSWFIKTFTQQLLLPINQAGHKWAMILASLMIFI 80
Cdd:MTH00120   1 MNLNFFDQFSSPELLGIPLILLAMLIPALLIPSPKNRLLTNRLTTLQLWLIKLITKQLMLPLNKKGHKWALILTSLMLLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392281926  81 LTLNVLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGLRNQPTAALGHLLPEGTPVPLIPVLIIIETISLFIRPLALGVR 160
Cdd:MTH00120  81 LLINLLGLLPYTFTPTTQLSMNMALAIPLWLATVLTGLRNQPTTSLAHLLPEGTPTPLIPALILIETISLLIRPLALGVR 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 392281926 161 LTANLTAGHLLIQLISTATITLMPMMTTVATLTAILLVLLTLLEVAVAVIQAYVFVLLLSLYLQENV 227
Cdd:MTH00120 161 LTANLTAGHLLIQLISTATLNLLPTMPTLSLLTLIILLLLTILELAVAMIQAYVFVLLLSLYLQENT 227
ATP6 MTH00179
ATP synthase F0 subunit 6; Provisional
 1-227 7.73e-91

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177230  Cd Length: 227  Bit Score: 266.43  E-value: 7.73e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392281926   1 MALNLFDQFMSPTHLGIPLIAIALTLPWILVPAPTNRYQNNRLVSLQSWFIKTFTQQLLLPINQAGHKWAMILASLMIFI 80
Cdd:MTH00179   1 MMLSMFDQFESPSLLGIPLLALALLLPWLLFPSLTNRWLNNRLSTLQSWFFGSFTFQLMQPINKKGHKWAVLFLSLMLFL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392281926  81 LTLNVLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGLRNQPTAALGHLLPEGTPVPLIPVLIIIETISLFIRPLALGVR 160
Cdd:MTH00179  81 LTLNLLGLLPYTFTPTTQLSLNLGLALPLWLGTVLYGLFNQPTIALAHLLPEGTPTPLIPMLVWIETISLLIRPLALGVR 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 392281926 161 LTANLTAGHLLIQLISTATITLMPMMTTVATLTAILLVLLTLLEVAVAVIQAYVFVLLLSLYLQENV 227
Cdd:MTH00179 161 LTANITAGHLLMHLISSAVFVLMNFMGMVALLTLLVLFLLTLLEVAVAMIQAYVFVLLLSLYLQENL 227
ATP6 MTH00101
ATP synthase F0 subunit 6; Validated
 1-226 4.37e-76

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177163  Cd Length: 226  Bit Score: 229.07  E-value: 4.37e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392281926   1 MALNLFDQFMSPTHLGIPLIAIALTLPWILVPAPtNRYQNNRLVSLQSWFIKTFTQQLLLPINQAGHKWAMILASLMIFI 80
Cdd:MTH00101   1 MNENLFASFITPTILGLPIVTLIIMFPSLLFPTP-NRLINNRLISIQQWLIQLTSKQMMTIHNTKGQTWSLMLMSLILFI 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392281926  81 LTLNVLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGLRNQPTAALGHLLPEGTPVPLIPVLIIIETISLFIRPLALGVR 160
Cdd:MTH00101  80 GSTNLLGLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFRNKTKASLAHFLPQGTPTPLIPMLVIIETISLFIQPMALAVR 159

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 392281926 161 LTANLTAGHLLIQLISTATITLMPMMTTVATLTAILLVLLTLLEVAVAVIQAYVFVLLLSLYLQEN 226
Cdd:MTH00101 160 LTANITAGHLLIHLIGGATLALMSISTTTALITFIILILLTILEFAVALIQAYVFTLLVSLYLHDN 225
ATP_synt_6_or_A TIGR01131
ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be ...
 5-227 5.68e-50

ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be designated ATP synthase, F0 subunit A; eukaryotic (chloroplast and mitochondrial) forms should be designated ATP synthase, F0 subunit 6. The F1/F0 ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Individual subunits in each of these clusters are named differently in prokaryotes and in organelles e.g., mitochondria and chloroplast. The bacterial equivalent of subunit 6 is named subunit 'A'. It has been shown that proton is conducted though this subunit. Typically, deprotonation and reprotonation of the acidic amino acid side-chains are implicated in the process. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273458  Cd Length: 226  Bit Score: 162.38  E-value: 5.68e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392281926    5 LFDQFMSP----THLGIPLIAIALTLPWILVP-APTNRYQNNRLVSLQSWFIKTFTQQLLLPINQAGHKWAMILASLMIF 79
Cdd:TIGR01131   1 LFSQFDISpitlFSLTLLSLILLLSLLIFLISsSLSRWLIPSRWQNLMESIYEFVLSIVKSQIGGKKGKFFPLIFTLFLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392281926   80 ILTLNVLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGLRNQPTAALGHLLPEGTPVPLIPVLIIIETISLFIRPLALGV 159
Cdd:TIGR01131  81 ILISNLLGLIPYSFTPTSHLSFTLGLALPLWLGLTISGFRKHPKGFLAHLVPSGTPLPLIPFLVIIETISYLARPISLSV 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 392281926  160 RLTANLTAGHLLIQLISTATITLMPMMttVATLTAILLVLLTLLEVAVAVIQAYVFVLLLSLYLQENV 227
Cdd:TIGR01131 161 RLFANISAGHLLLTLLSGLLFSLMSSA--IFALLLLILVALIILEIFVAFIQAYVFTLLTCLYLNDAL 226
ATP6 MTH00035
ATP synthase F0 subunit 6; Validated
 4-227 2.41e-47

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177110  Cd Length: 229  Bit Score: 155.90  E-value: 2.41e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392281926   4 NLFDQFMSPTHLGIPL--IAIALTLPWILVPAPTNrYQNNRLVSLQSWFIKTFTQQLLLPINQAGHKWAMILASLMIFIL 81
Cdd:MTH00035   6 SIFGQFSPDTILFIPLtlLSSVIALSWLFFINPTN-WLPSRSQSIWLTFRQEILKLIFQNTNPNTAPWAGLLTTVFILIL 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392281926  82 TLNVLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGLRNQPTAALGHLLPEGTPVPLIPVLIIIETISLFIRPLALGVRL 161
Cdd:MTH00035  85 SINVLGLFPYAFTSTSHISLTYSLGIPLWMSVNILGFYLAFNSRLSHLVPQGTPSFLIPLMVWIETLSLFAQPIALGLRL 164

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 392281926 162 TANLTAGHLLIQLISTATITLMPmMTTVATLTAILLVLLTLLEVAVAVIQAYVFVLLLSLYLQENV 227
Cdd:MTH00035 165 AANLTAGHLLIFLLSTAIWELSN-SPLISIITLIIFFLLFILEIGVACIQAYVFTALVHFYLEQNI 229
ATP6 MTH00157
ATP synthase F0 subunit 6; Provisional
 1-225 1.46e-42

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214441  Cd Length: 223  Bit Score: 143.38  E-value: 1.46e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392281926   1 MALNLFDQFMSPTHLGIPLIAIALTLPWILVPaPTNRYQNNRLVSLQSWFIKTFTQQLLLPINQAGHKWAMILASLMIFI 80
Cdd:MTH00157   1 MMTNLFSIFDPSTSFNLSLNWLSTFLGLLFIP-SSFWLIPSRYNILWNKILKTLHKEFKTLLGPKNKGSTLIFISLFSFI 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392281926  81 LTLNVLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGLRNQPTAALGHLLPEGTPVPLIPVLIIIETISLFIRPLALGVR 160
Cdd:MTH00157  80 LFNNFLGLFPYIFTSTSHLSLTLSLALPLWLSFMLFGWINNTNHMFAHLVPQGTPPILMPFMVLIETISNLIRPGTLAVR 159

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 392281926 161 LTANLTAGHLLIQLISTATITLMPMMTTVatlTAILLVLLTLLEVAVAVIQAYVFVLLLSLYLQE 225
Cdd:MTH00157 160 LAANMIAGHLLLTLLGNTGPSLSSMILSI---LILIQILLLILESAVAIIQSYVFSVLSTLYSSE 221
ATP6 MTH00176
ATP synthase F0 subunit 6; Provisional
 1-226 7.91e-40

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214449  Cd Length: 229  Bit Score: 136.70  E-value: 7.91e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392281926   1 MALNLFDQFMSPTHLGIPLIAIALTLPWI--LVPAPTNRYQNNRLVSLQSWFIKTFTQQLLLPINQAGHKWAMILASLMI 78
Cdd:MTH00176   1 MLVDLFSSFDPPNKNIFSMISLSWITLLLflLLMPSSVWFCPSKLQVFMLMFSTFLPEMILRSNGSYILGSASIIISLFI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392281926  79 FILTLNVLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGLRNQPTAALGHLLPEGTPVPLIPVLIIIETISLFIRPLALG 158
Cdd:MTH00176  81 LVMSLNLSGLIPYVFTSTSHLVITLSLALPLWLGVILSGFINNFYSRLSHLVPQGTPPLLNPFLVLIELVSLLIRPLTLA 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 392281926 159 VRLTANLTAGHLLIQLISTATITLMPMMTTVATLTAILLVLLTLLEVAVAVIQAYVFVLLLSLYLQEN 226
Cdd:MTH00176 161 VRLAANLSAGHLLLGLLGAAMWGLLPVSPLIGFLLLIVQILYFMFEIAVCMIQAYVFTLLLSLYLDEH 228
ATP-synt_Fo_a_6 cd00310
ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms ...
 66-224 1.15e-38

ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms are designated as ATP synthase, Fo complex, subunit a; eukaryotic (chloroplast and mitochondrial) forms are designated as ATP synthase, Fo complex, subunit 6. The F-ATP synthases (also called FoF1-ATPases) consist of two structural domains: F1 (factor one) complex containing the soluble catalytic core, and Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. F-ATP synthase has also been found in the archaea Methanosarcina acetivorans. F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis.


Pssm-ID: 349411 [Multi-domain]  Cd Length: 156  Bit Score: 130.98  E-value: 1.15e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392281926  66 GHKWAMILASLMIFILTLNVLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGLRNQPTAALGHLLPEGTPVPLIPVLIII 145
Cdd:cd00310    1 GKKYLPLLGTLFLFILFSNLLGLIPYSFTPTSHLNVTLALALIVFLGVHILGIKKHGLGFFLHFLPPGTPLPLAPLMVPI 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 392281926 146 ETISLFIRPLALGVRLTANLTAGHLLIQLISTATITlmpMMTTVATLTAILLVLLTLLEVAVAVIQAYVFVLLLSLYLQ 224
Cdd:cd00310   81 ELISELIRPLSLSVRLFANMFAGHLLLALLSGLVPS---LLSSVGLLPLLLPVALTLLELFVAFIQAYVFTLLTAVYIS 156
ATP6 MTH00173
ATP synthase F0 subunit 6; Provisional
 40-225 1.74e-36

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214448  Cd Length: 231  Bit Score: 128.06  E-value: 1.74e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392281926  40 NNRLVSLQSWFIKTFTQQLLLPINQAGHKWAMILASLMIFILTLNVLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGLR 119
Cdd:MTH00173  42 SSNLSSVFKLFVLTVSSQVTRSSGLNLGGFSLLLSSLFLFLISLNLSGLLPFVFSVTSHLAFTFSLALPLWLSLILSGLF 121

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392281926 120 NQPTAALGHLLPEGTPVPLIPVLIIIETISLFIRPLALGVRLTANLTAGHLLIQLI-STATITLMPMMTTVATLTAILLV 198
Cdd:MTH00173 122 YNPSKSLAGLVPAGAPAGLNPFLVLIETVSILIRPLTLTVRLLANISAGHIVLTLIgNYLSSSLFSSSVVSLLLVLLIQV 201

                        170       180
                 ....*....|....*....|....*..
gi 392281926 199 LLTLLEVAVAVIQAYVFVLLLSLYLQE 225
Cdd:MTH00173 202 GYFIFEVAVMLIQAYIFTLLIKLYSDE 228
ATP-synt_A pfam00119
ATP synthase A chain;
19-224 4.17e-33

ATP synthase A chain;


Pssm-ID: 459679 [Multi-domain]  Cd Length: 216  Bit Score: 118.75  E-value: 4.17e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392281926   19 LIAIALTLPWILVPAPTNRYQNNRLVSLQSWFIKTFTQQLLLPI-NQAGHKWAMILASLMIFILTLNVLGLL---PYTFT 94
Cdd:pfam00119   6 IVALILLLFLLLATRKTKKLVPGRLQNFVEMLVEFVDNIVKDNIgKKKGRKFFPLLLTLFFFILVSNLLGLIpksPGGFT 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392281926   95 PTTQLSLNMGLAVPLWLATVIIGLRNQPTAA-LGHLLPEGTPVPLIPVLIIIETISLFIRPLALGVRLTANLTAGHLLIQ 173
Cdd:pfam00119  86 VTADINVTLALALIVFLLVHYYGIKKHGLGGyFKKLFVPPVPLPLVPLLLPIEIISEFARPVSLSLRLFGNMLAGHLLLL 165

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 392281926  174 LISTATITLMPMMTTVATLTAILLVLLTLLEVAVAVIQAYVFVLLLSLYLQ 224
Cdd:pfam00119 166 LLAGLIFALLSAGFLLGVIPPLLGVAWTLFELLVAFIQAYVFTMLTAVYIS 216
ATP6 MTH00005
ATP synthase F0 subunit 6; Provisional
 18-222 1.42e-28

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 164583  Cd Length: 231  Bit Score: 107.51  E-value: 1.42e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392281926  18 PLIAIALTLPWILVPAPTNRYQNNRLVSLQSWFIKTFTQQLLLPINQAGHKWAMILASLMIFILTLNVLGLLPYTFTPTT 97
Cdd:MTH00005  22 STAFWAFNFSIILLLSSSFWITPNRLSSIMSPPKSTMHTQLSRTFGKHLKGFSSLISALFTMIILMNLSGLLPYVFSTSS 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392281926  98 QLSLNMGLAVPLWLATVIIGLRNQPTAALGHLLPEGTPVPLIPVLIIIETISLFIRPLALGVRLTANLTAGHLLIQLIST 177
Cdd:MTH00005 102 HLIFTLTLGLPLWLSLIMSSVTFSPKKFAAHLLPGGAPDWLNPFLVLIETISILVRPITLSFRLAANMSAGHIVLSLIGI 181

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 392281926 178 ATITLMPMMTTVATLTAILLVLLTLLEVAVAVIQAYVFVLLLSLY 222
Cdd:MTH00005 182 YAASALFSSISSTILLILTQMGYILFEVGICLIQAYIFCLLLSLY 226
ATP6 MTH00172
ATP synthase F0 subunit 6; Provisional
 66-223 1.57e-26

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214447  Cd Length: 232  Bit Score: 102.04  E-value: 1.57e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392281926  66 GHKWAMILASLMIFILTLNVLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGLRNQPTAALGHLLPEGTPVPLIPVLIII 145
Cdd:MTH00172  68 GLKYFPFIISLFFFIVFLNLLGLFPYVFTPTTHIVVTLGLSFSIIIGVTLAGFWRFKWDFFSILMPSGAPLGLAPLLVLI 147

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 392281926 146 ETISLFIRPLALGVRLTANLTAGHLLIQLISTATITLMPMMTTVATLTAILLVLLTLLEVAVAVIQAYVFVLLLSLYL 223
Cdd:MTH00172 148 ETVSYISRAISLGVRLAANLSAGHLLFAILAGFGFNMLCASGFLSLFPLLIMVFITLLEIAVAVIQAYVFCLLTTIYL 225
ATP6 MTH00175
ATP synthase F0 subunit 6; Provisional
 62-227 2.57e-25

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177228  Cd Length: 244  Bit Score: 99.31  E-value: 2.57e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392281926  62 INQAGHKWAMILASLMIFILTLNVLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGLRNQPTAALGHLLPEGTPVPLIPV 141
Cdd:MTH00175  75 LGKSGQKYFPFILSLFLFIAILNILGLFPYVFTPTAHIIITFGLSLSIIIAVTLLGFLTFKWNFLSILMPGGAPLVLAPF 154

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392281926 142 LIIIETISLFIRPLALGVRLTANLTAGHLLIQLISTATITLMPM-MTTVATLTAILLVLLTLLEVAVAVIQAYVFVLLLS 220
Cdd:MTH00175 155 LVLIETLSYLIRAISLGVRLAANISAGHLLFAILSGFAFNMLSNgLIILSLFPMLIMIFITLLEMAVAVIQAYVFCLLTT 234


                 ....*..
gi 392281926 221 LYLQENV 227
Cdd:MTH00175 235 IYLGDTI 241
AtpB COG0356
FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP ...
 61-225 6.72e-23

FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit a is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440125 [Multi-domain]  Cd Length: 212  Bit Score: 92.06  E-value: 6.72e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392281926  61 PINQAGHKWAMILASLMIFILTLNVLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGLRNQPTAA-LGHLLPEGTPvPLI 139
Cdd:COG0356   49 TIGKKGRKFAPLLLTLFLFILVSNLLGLIPGLFPPTADINVTLALALIVFVLVHYYGIKKKGLGGyLKHLFFPPFP-WLA 127

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392281926 140 PVLIIIETISLFIRPLALGVRLTANLTAGHLLIqlistATITLMPMMTTVATLTAILLVLLTLLEVAVAVIQAYVFVLLL 219
Cdd:COG0356  128 PLMLPIEIISELARPLSLSLRLFGNMFAGHIIL-----LLLAGLAPFLLLGVLSLLLPVAWTAFELLVGFLQAYIFTMLT 202


                 ....*.
gi 392281926 220 SLYLQE 225
Cdd:COG0356  203 AVYISL 208
PRK05815 PRK05815
F0F1 ATP synthase subunit A; Validated
 62-225 9.51e-20

F0F1 ATP synthase subunit A; Validated


Pssm-ID: 235617  Cd Length: 227  Bit Score: 84.08  E-value: 9.51e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392281926  62 INQAGHKWAMILASLMIFILTLNVLGLLP-YTFTPTTQLSLNMGLAVPLWLATVIIGLRNQptaALGHLLPEGTPVPlIP 140
Cdd:PRK05815  65 IGGKGKKFAPLAFTLFLFILLMNLLGLIPyLLFPPTADINVTLALALIVFVLVIYYGIKKK---GLGGYLKEFYLQP-HP 140

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392281926 141 VLIIIETISLFIRPLALGVRLTANLTAGHLLIQLIStatiTLMPMMTTVATLTAILLVLLTLLEVAVAVIQAYVFVLLLS 220
Cdd:PRK05815 141 LLLPIEIISEFSRPISLSLRLFGNMLAGELILALIA----LLGGAGLLLALAPLILPVAWTIFEIFVGTLQAYIFMMLTI 216


                 ....*
gi 392281926 221 LYLQE 225
Cdd:PRK05815 217 VYISM 221
ATP6 MTH00174
ATP synthase F0 subunit 6; Provisional
 63-227 1.91e-17

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 133799  Cd Length: 252  Bit Score: 78.44  E-value: 1.91e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392281926  63 NQAGHKWAMILaSLMIFILTLNVLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGLRNQPTAALGHLLPEGTPVPLIPVL 142
Cdd:MTH00174  85 NKGGNYLAFVL-SLFILILFGNGLGLFPYVFTPTVHMVITLGLSFAIIVGTTLAGLITFRFNFFSILMPQGAPLALAPLL 163

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392281926 143 IIIETISLFIRPLALGVRLTANLTAGHLLIQLISTATITLMPMMTTV-ATLTAILLVLLTLLEVAVAVIQAYVFVLLLSL 221
Cdd:MTH00174 164 TIIETLSYISRAISLGVRLAANISSGHLLFSIIASFAWKMINTGILIgSFVPFAILIFVTILEMAVAIIQAYVFTLLTIV 243


                 ....*.
gi 392281926 222 YLQENV 227
Cdd:MTH00174 244 YLRDTV 249
PRK13419 PRK13419
F0F1 ATP synthase subunit A; Provisional
 73-223 8.61e-14

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237381  Cd Length: 342  Bit Score: 69.39  E-value: 8.61e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392281926  73 LASLMIFILTLNVLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGLRNQPTAALGHLLPEGTPVPLIPVLIIIETISLFI 152
Cdd:PRK13419 174 LLTVFFFILVCNLLGLVPYGATATGNINVTLTLAVFTFFITQYAAIKAHGIKGYLAHLTGGTHWSLWIIMIPIEFIGLFT 253

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 392281926 153 RPLALGVRLTANLTAGHLLI-QLISTATITLMPMMTtvATLTAILLVLLTLLEVAVAVIQAYVFVLLLSLYL 223
Cdd:PRK13419 254 KPFALTVRLFANMTAGHIVIlSLIFISFILKSYIVA--VAVSVPFAIFIYLLELFVAFLQAYIFTMLSALFI 323
ATP6 MTH00087
ATP synthase F0 subunit 6; Provisional
 71-225 5.48e-13

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177152  Cd Length: 195  Bit Score: 65.00  E-value: 5.48e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392281926  71 MILASLMIFILTLNVLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGLRNQptAALGHLLPEGTPVPLIP-VLIIIETIS 149
Cdd:MTH00087  53 VISFFTFIVLLLFCFGGLFPYSFSPCGMVEFTFLYALVAWLSTFLSFLSKS--EKFSVYLSKGSDSFLKTfSMLFVEIVS 130

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 392281926 150 LFIRPLALGVRLTANLTAGHLLIQLISTATITLMPMMttvatltaillVLLTLLEVAVAVIQAYVFVLLLSLYLQE 225
Cdd:MTH00087 131 ELSRPLALTLRLTVNLMVGHLISSLLNFLGEKYVWLS-----------ILAIMMECFVAFIQSYIFSRLIYLYLNE 195
PRK13417 PRK13417
F0F1 ATP synthase subunit A; Provisional
 94-223 9.53e-08

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237380  Cd Length: 352  Bit Score: 51.43  E-value: 9.53e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392281926  94 TPTTQLSLNMGLAVPLWLATVIIGLRNQPTAALGHLLPEGTPVPLIPVLIIIETI-SLFIRPLALGVRLTANLTAGHLLI 172
Cdd:PRK13417 217 TVTGDISVTMTLALLTMFLIYGAGFSYQGPKFIWHSVPNGVPLLLYPIMWPLEFIvSPMAKTFALTVRLLANMTAGHVII 296

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 392281926 173 qlISTATITLMPMMTTVATLTAILLVLLTLLEVAVAVIQAYVFVLLLSLYL 223
Cdd:PRK13417 297 --LALMGFIFQFQSWGIVPVSVIGSGLIYVLEIFVAFLQAYIFVLLTSLFV 345
PRK13421 PRK13421
F0F1 ATP synthase subunit A; Provisional
 42-175 6.93e-04

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237383  Cd Length: 223  Bit Score: 39.68  E-value: 6.93e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392281926  42 RLVSLQSWFIKTFTQQLLLPINQAGHKWAMILASLMIFILTLNVLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGLRNQ 121
Cdd:PRK13421  50 RLQSVLELVVTTIDAQIRDTMQTDPAPYRALIGTLFLFVLVANWSSLVPGVEPPTAHLETDAALALIVFLATIYYGVRAR 129

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 392281926 122 ptAALGHLLPEGTPVPLIPVLIIIETISlfiRPLALGVRLTANLTAGHLLIQLI 175
Cdd:PRK13421 130 --GVRGYLATFAEPTWVMIPLNLVEQLT---RTFSLIVRLFGNVMSGVFVIGIV 178
PRK13420 PRK13420
F0F1 ATP synthase subunit A; Provisional
 73-223 1.67e-03

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237382 [Multi-domain]  Cd Length: 226  Bit Score: 38.57  E-value: 1.67e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392281926  73 LASLMIFILTLNVLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGLRNQP-TAALGHLLPEGtpvpliPVLIIIETISLF 151
Cdd:PRK13420  78 VGTLWIFILVANLIGLIPGFHSPTADLSVTAALALLVFFSVHWFGIRAEGlREYLKHYLSPS------PFLLPFHLISEI 151

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 392281926 152 IRPLALGVRLTANLTAGHLLIQLISTATITLMPMmttvatltaillvLLTLLEVAVAVIQAYVFVLLLSLYL 223
Cdd:PRK13420 152 TRTLALAVRLFGNIMSLELAALLVLLVAGFLVPV-------------PILMLHIIEALVQAYIFGMLALIYI 210
ATP6 MTH00050
ATP synthase F0 subunit 6; Validated
 75-168 2.62e-03

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177125  Cd Length: 170  Bit Score: 37.17  E-value: 2.62e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392281926  75 SLMIFILTLNVLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGLRNQPTAALGHLLPEGTPVPLIPVLIIIETISLFIRP 154
Cdd:MTH00050  28 VVLFIVLFLFLLYRLPYIYSPFLFVVFLFVVVFPLFISLFLSRVFDSLNEFFSSFVPVGTPLYICPFVCIAETISYIIRP 107

                         90
                 ....*....|....
gi 392281926 155 LALGVRLTANLTAG 168
Cdd:MTH00050 108 VVLILRPFINISLG 121
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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