NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|400296533|gb|AFP82456|]
View 

NADH dehydrogenase subunit 2 (mitochondrion) [Sclerurus mexicanus andinus]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 7.62e-161

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 453.51  E-value: 7.62e-161
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533   1 MNPQAKLIFSLSLILGTTITITSNHWAMAWTGLEINTLAILPLIAKSHHPRAIEAATKYFLTQAAASTLLLFSSTINAWF 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533  81 TGQWDITQLTHPISCLLLTTAISIKLGLVPFHYWFPEVLQGSSLTTGLLLATAMKFPPMTLFLLTSSSLNPTLLTTMAIA 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533 161 STALGGWAGLNQTQTRKILAFSSISHLGWMTAIILYNPKLTLISFYLYCAMTTAIFLTLKTTKILKLSSMMAAWTKIPPL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533 241 NGALLLALLSLAGLPPLTGFLPKWLIIHELTKQEMTPTATVIALLSLLGLFFYLRLAYCATITLPPNSTNYMKQWQTKKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 400296533 321 VAIFTTISVTTTMTLLPLSPMILSIT 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 7.62e-161

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 453.51  E-value: 7.62e-161
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533   1 MNPQAKLIFSLSLILGTTITITSNHWAMAWTGLEINTLAILPLIAKSHHPRAIEAATKYFLTQAAASTLLLFSSTINAWF 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533  81 TGQWDITQLTHPISCLLLTTAISIKLGLVPFHYWFPEVLQGSSLTTGLLLATAMKFPPMTLFLLTSSSLNPTLLTTMAIA 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533 161 STALGGWAGLNQTQTRKILAFSSISHLGWMTAIILYNPKLTLISFYLYCAMTTAIFLTLKTTKILKLSSMMAAWTKIPPL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533 241 NGALLLALLSLAGLPPLTGFLPKWLIIHELTKQEMTPTATVIALLSLLGLFFYLRLAYCATITLPPNSTNYMKQWQTKKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 400296533 321 VAIFTTISVTTTMTLLPLSPMILSIT 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 9-298 4.32e-25

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 105.20  E-value: 4.32e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533   9 FSLSL--ILGTTITITSNHWAMAWTGLEINTLAILPLIA-KSHHPRAIEAATKYFLTQAAASTLLLFSSTINAWFTGQWD 85
Cdd:COG1007  105 YALLLfaTLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLN 184

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533  86 ITQLTHPIS------------CLLLTTAISIKLGLVPFHYWFPEVLQGSSLTTGLLLATAMK----FPPMTLFLLTSSSL 149
Cdd:COG1007  185 LAGIAAALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaafAALLRLLVEAFPGL 264

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533 150 NP---TLLTTMAIASTALGGWAGLNQTQTRKILAFSSISHLGWM-TAIILYNPK-LTLISFYL--YCAMTTAIFLTL--- 219
Cdd:COG1007  265 AAdwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLlLGLAAGTPLgVSAALFYLlaYLFMNLGAFAVIlll 344

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533 220 --KTTKILKLSSMMAAWTKIPPLNGALLLALLSLAGLPPLTGFLPKWLIIHELTKQEMTPTATVIALLSLLGLFFYLRLA 297
Cdd:COG1007  345 srKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVV 424


                 .
gi 400296533 298 Y 298
Cdd:COG1007  425 K 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-267 1.38e-21

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 93.15  E-value: 1.38e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533   23 SNHWAMAWTGLEINTLAILPLIA-KSHHPRAIEAATKYFLTQAAASTLLLFSSTINAWFTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533   91 HPISCLLLTTAISIKLGLVPFHYWFPEVLQGSSLTTGLLLA-TAMKFPP-----MTLFLLTSSSLNPTLLTTMAIASTAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGyglirRSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533  165 GGWAGLNQTQTRKILAFSSISHLGWMTAIIL----YNPKLTLISFYLYCAMTTAIFL-----TLKTTKILKLSSMMAAWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|..
gi 400296533  236 KIPPLNGALLLALLSLAGLPPLTGFLPKWLII 267
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLIL 272
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-297 1.02e-19

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 89.62  E-value: 1.02e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533   14 ILGTTITITSNHWAMAWTGLEINTLAILPLIA-KSHHPRAIEAATKYFLTQAAASTLLLFSSTINAWFTGQWDITQLTHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533   93 ------------ISCLLLTTAISIKLGLVPFHYWFPEVLQGSSLTTGLLLATAMK----FPPMTLFLLTSSSLNPT---L 153
Cdd:TIGR01770 192 lsngmlnislllLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaifAVFLRLFLYILFGFSEAwqiF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533  154 LTTMAIASTALGGWAGLNQTQTRKILAFSSISHLGW-MTAIILYNPKLTLISFY---LYCAMTTAIFLTL------KTTK 223
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYiLIGLLAGTLEGIKAVLFyifIYALMSLGAFGVLsllrsyKDEW 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 400296533  224 ILKLSSMMAAWTKIPPLNGALLLALLSLAGLPPLTGFLPKWLIIHELTKQEMTPTATVIALLSLLGLFFYLRLA 297
Cdd:TIGR01770 352 IEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 7.62e-161

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 453.51  E-value: 7.62e-161
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533   1 MNPQAKLIFSLSLILGTTITITSNHWAMAWTGLEINTLAILPLIAKSHHPRAIEAATKYFLTQAAASTLLLFSSTINAWF 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533  81 TGQWDITQLTHPISCLLLTTAISIKLGLVPFHYWFPEVLQGSSLTTGLLLATAMKFPPMTLFLLTSSSLNPTLLTTMAIA 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533 161 STALGGWAGLNQTQTRKILAFSSISHLGWMTAIILYNPKLTLISFYLYCAMTTAIFLTLKTTKILKLSSMMAAWTKIPPL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533 241 NGALLLALLSLAGLPPLTGFLPKWLIIHELTKQEMTPTATVIALLSLLGLFFYLRLAYCATITLPPNSTNYMKQWQTKKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 400296533 321 VAIFTTISVTTTMTLLPLSPMILSIT 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-346 5.59e-130

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 375.30  E-value: 5.59e-130
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533   1 MNPQAKLIFSLSLILGTTITITSNHWAMAWTGLEINTLAILPLIAKSHHPRAIEAATKYFLTQAAASTLLLFSSTINAWF 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533  81 TGQWDITQLTHPISCLLLTTAISIKLGLVPFHYWFPEVLQGSSLTTGLLLATAMKFPPMTLFLLTSSSlNPTLLTTMAIA 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533 161 STALGGWAGLNQTQTRKILAFSSISHLGWMTAIILYNPKLTLISFYLYCAMTTAIFLTLKTTKILKLSSMMAAWTKIPPL 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533 241 NGALLLALLSLAGLPPLTGFLPKWLIIHELTKQEMTPTATVIALLSLLGLFFYLRLAYCATITLPPNSTNYMKQWQTKKP 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319

                        330       340
                 ....*....|....*....|....*..
gi 400296533 321 -VAIFTTISVTTTMTLLPLSPMILSIT 346
Cdd:MTH00135 320 qLTLPLAISTTATLMLLPLTPAILALL 346
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-345 6.26e-130

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 375.03  E-value: 6.26e-130
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533   1 MNPQAKLIFSLSLILGTTITITSNHWAMAWTGLEINTLAILPLIAKSHHPRAIEAATKYFLTQAAASTLLLFSSTINAWF 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533  81 TGQWDITQLTHPISCLLLTTAISIKLGLVPFHYWFPEVLQGSSLTTGLLLATAMKFPPMTLFLLTSSSLNPTLLTTMAIA 160
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533 161 STALGGWAGLNQTQTRKILAFSSISHLGWMTAIILYNPKLTLISFYLYCAMTTAIFLTLKTTKILKLSSMMAAWTKIPPL 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533 241 NGALLLALLSLAGLPPLTGFLPKWLIIHELTKQEMTPTATVIALLSLLGLFFYLRLAYCATITLPPNSTNYMKQWQTKKP 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320

                        330       340
                 ....*....|....*....|....*
gi 400296533 321 VAIFTTISVTTTMTLLPLSPMILSI 345
Cdd:MTH00070 321 TNNLLSLTIILSLMLLPITPTILNL 345
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-346 3.52e-116

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 339.90  E-value: 3.52e-116
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533   1 MNPQAKLIFSLSLILGTTITITSNHWAMAWTGLEINTLAILPLIAKSHHPRAIEAATKYFLTQAAASTLLLFSSTINAWF 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533  81 TGQWDITQLTHPISCLLLTTAISIKLGLVPFHYWFPEVLQGSSLTTGLLLATAMKFPPMTLFLLTSSSLNPTLLTTMAIA 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533 161 STALGGWAGLNQTQTRKILAFSSISHLGWMTAIILYNPKLTLISFYLYCAMTTAIFLTLKTTKILKLSSMMAAWTKIPPL 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533 241 NGALLLALLSLAGLPPLTGFLPKWLIIHELTKQEMTPTATVIALLSLLGLFFYLRLAYCATITLPPnSTNYMK-QWQ--- 316
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFP-STNNMKmKWQfen 319

                        330       340       350
                 ....*....|....*....|....*....|
gi 400296533 317 TKKPvaIFTTISVTTTMTLLPLSPMILSIT 346
Cdd:MTH00105 320 TKPM--TLLPTLIILSTMLLPLTPMLSILE 347
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-346 3.36e-95

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 286.48  E-value: 3.36e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533   1 MNPQAKLIFSLSLILGTTITITSNHWAMAWTGLEINTLAILPLIAKSHHPRAIEAATKYFLTQAAASTLLLFSSTINAWF 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533  81 TGQWDITQLTHPISCLLLTTAISIKLGLVPFHYWFPEVLQGSSLTTGLLLATAMKFPPMTLFLLTSSSLNPTLLTTMAIA 160
Cdd:MTH00200  81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533 161 STALGGWAGLNQTQTRKILAFSSISHLGWMTAIILYNPKLTLISFYLYCAMTTAIFLTLKTTKILKLSSMMAAWTKIPPL 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533 241 NGALLLALLSLAGLPPLTGFLPKWLIIHELTKQEMTPTATVIALLSLLGLFFYLRLAYCATITLPPNSTNYMKQWQTKKP 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320

                        330       340
                 ....*....|....*....|....*.
gi 400296533 321 VAIFTTISVTTTMTLLPLSPMILSIT 346
Cdd:MTH00200 321 SNLLVGLLLLLSILGLPLTPQLLFLF 346
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-324 5.02e-80

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 247.92  E-value: 5.02e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533   1 MNPQAKLIFSLSLILGTTITITSNHWAMAWTGLEINTLAILPLIAKSHHPRAIEAATKYFLTQAAASTLLLFSSTINAWF 80
Cdd:MTH00041   1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533  81 TGQWDITQLTHPISCLLLTTAISIKLGLVPFHYWFPEVLQGSSLTTGLLLATAMKFPPMTLFLLTSSSLNPTLLTTMAIA 160
Cdd:MTH00041  81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533 161 STALGGWAGLNQTQTRKILAFSSISHLGWMTAIILYNPKLTLISFYLYCAMTTAIFLTLKTTKILKLSSMMAAWTKIPPL 240
Cdd:MTH00041 161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533 241 NGALLLALLSLAGLPPLTGFLPKWLIIHELTKQEMTPTATVIALLSLLGLFFYLRLAYCATITLPPNSTNYMKQWQTKKP 320
Cdd:MTH00041 241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGN 320


                 ....
gi 400296533 321 VAIF 324
Cdd:MTH00041 321 ITVY 324
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-343 4.46e-58

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 190.80  E-value: 4.46e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533   1 MNPQAKLIFSLSLILGTTITITSNHWAMAWTGLEINTLAILPLIAKSHHPRAIEAATKYFLTQAAASTLLLFSSTINAWF 80
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLN 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533  81 TGqwditqLTHPISCLLLTTAISIKLGLVPFHYWFPEVLQGSSLTTGLLLATAMKFPPMTLFlltSSSLNPTLLTTMAIA 160
Cdd:MTH00160  82 LM------LFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILL---SYLINNNFIIIIIIL 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533 161 STALGGWAGLNQTQTRKILAFSSISHLGWMTAIILYNPKLTLISFYLYCAMTTAIFLTLKTTKILKLSSMMAAWTKIPPL 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533 241 NGALLLALLSLAGLPPLTGFLPKWLIIHELTKQEMTPTATVIALLSLLGLFFYLRLAYCAtITLPPNSTNYMKQWQTKKP 320
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSS-LMLNYNKNKWNLKKKKNKF 311

                        330       340
                 ....*....|....*....|...
gi 400296533 321 VAIFTTISVTTTMTLLPLSPMIL 343
Cdd:MTH00160 312 SLILNFLSFISLFGLILSSLLFL 334
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 5-302 9.88e-46

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 158.51  E-value: 9.88e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533   5 AKLIFSLSLILGTTITITSNHWAMAWTGLEINTLAILPLIAKSHHPRAIEAATKYFLTQAAASTLLLFSSTINAWFTGQW 84
Cdd:MTH00144   5 SNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533  85 DITqlthpiscLLLTTAISIKLGLVPFHYWFPEVLQGSSLTTGLLLATAMKFPPmtLFLLTSSSLNPTLLTT---MAIAS 161
Cdd:MTH00144  85 FSM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAP--LFLLSNFLDLYWLAYLlcvISVLS 154

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533 162 TALGGWAGLNQTQTRKILAFSSISHLGWMTAIILYNPKLTLISFYLYCAMTTAIFLTLkTTKILKLSSMMAAWTKIPPLN 241
Cdd:MTH00144 155 ALVGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSL-WSGDSGSMKDLGSLKPSYKTG 233

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 400296533 242 GALLLALLSLAGLPPLTGFLPKWLIIHELTKQEMTPTATVIALLSLLGLFFYLRLAYCATI 302
Cdd:MTH00144 234 LSIISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFL 294
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 7-310 2.39e-45

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 157.63  E-value: 2.39e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533   7 LIFSLSLILGTTITITSNHWAMAWTGLEINTLAILPLIAKSHHPRAIEAATKYFLTQAAASTLLLFSSTInawftgQWDI 86
Cdd:MTH00011   9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTM------MWSF 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533  87 TQLTHPISCLLLTTAISIKLGLVPFHYWFPEVLQGSSLTTGLLLATAMKFPPMTLFLLTSSSLNPTLLTTMAIASTALGG 166
Cdd:MTH00011  83 PSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGG 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533 167 WAGLNQTQTRKILAFSSISHLGWMTAIILYNPKLTLISFYLYCAMTTAIFLTLKTTKILKLSSMMAAWTKIPPLNGALLL 246
Cdd:MTH00011 163 LGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFI 242

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 400296533 247 ALLSLAGLPPLTGFLPKWLIIHELTKQEMTPTATVIALLSLLGLFFYLRLAYcATITLPPNSTN 310
Cdd:MTH00011 243 MLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIF-NFMYLSPTFSS 305
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 8-298 8.73e-39

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 140.19  E-value: 8.73e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533   8 IFSLSLILGTTITITSNHWAMAWTGLEINTLAILPLIAKSHHPRAIEAATKYFLTQAAASTLLLFSSTinAWFTGQWdit 87
Cdd:MTH00197   2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGS--LSFSNLY--- 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533  88 qlTHPISCLLLTTAISIKLGLVPFHYWFPEVLQGSSLTTGLLLATAMKFPPmtLFLLTSSSLNPTLLTTMAIASTALGGW 167
Cdd:MTH00197  77 --LSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAP--LLILAFNSSSFMGLLICSVLSSLIGGI 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533 168 AGLNQTQTRKILAFSSISHLGWMTAIILYNPKLTLISFYLYCAMTTAIFLTLKTTKILKLSSMMAAWTKIPPLNGALLLA 247
Cdd:MTH00197 153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLS 232

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 400296533 248 LLSLAGLPPLTGFLPKWLIIHELTKQEMTPTATVIALLSLLGLFFYLRLAY 298
Cdd:MTH00197 233 FLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAY 283
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 9-298 4.32e-25

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 105.20  E-value: 4.32e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533   9 FSLSL--ILGTTITITSNHWAMAWTGLEINTLAILPLIA-KSHHPRAIEAATKYFLTQAAASTLLLFSSTINAWFTGQWD 85
Cdd:COG1007  105 YALLLfaTLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLN 184

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533  86 ITQLTHPIS------------CLLLTTAISIKLGLVPFHYWFPEVLQGSSLTTGLLLATAMK----FPPMTLFLLTSSSL 149
Cdd:COG1007  185 LAGIAAALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaafAALLRLLVEAFPGL 264

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533 150 NP---TLLTTMAIASTALGGWAGLNQTQTRKILAFSSISHLGWM-TAIILYNPK-LTLISFYL--YCAMTTAIFLTL--- 219
Cdd:COG1007  265 AAdwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLlLGLAAGTPLgVSAALFYLlaYLFMNLGAFAVIlll 344

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533 220 --KTTKILKLSSMMAAWTKIPPLNGALLLALLSLAGLPPLTGFLPKWLIIHELTKQEMTPTATVIALLSLLGLFFYLRLA 297
Cdd:COG1007  345 srKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVV 424


                 .
gi 400296533 298 Y 298
Cdd:COG1007  425 K 425
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-296 1.14e-22

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 97.41  E-value: 1.14e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533  13 LILGTTITITSNHWAMAWTGLEINTLAILPLIA-KSHHPRAIEAATKYFLTQAAASTLLLFS-------------STINA 78
Cdd:MTH00196   2 VALGILCLISSSNWLSVYLAIELQTLSLFILIAqNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533  79 WFTGQWDITQLTHPISCLLLTTAISIKLGLVPFHYWFPEVLQGSSLTTGLLLATAMKFPpmTLFLLTSSSLNPTLLTTMA 158
Cdd:MTH00196  82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLG--IFSILVSIGLNVNILLIGG 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533 159 IASTALGGWAGLNQTQTRKILAFSSISHLGWMTAIILYNP----KLTLISFYLYCAMTTAIF---LTLKTTK--ILKLSS 229
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSICVFsiiLALNVYKnlIIEFSG 239

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 400296533 230 MMaawTKIPPLNGALLLALLSLAGLPPLTGFLPKWLIIHELTKQEMTPTATVIALLSLLGLFFYLRL 296
Cdd:MTH00196 240 LS---RRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
9-296 1.59e-22

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 97.97  E-value: 1.59e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533   9 FSLSL--ILGTTITITSNHWAMAWTGLEINTLAILPLIA-KSHHPRAIEAATKYFLTQAAASTLLLFSSTINAWFTGQWD 85
Cdd:PRK05777 106 YLLVLfaLLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLS 185

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533  86 ITQLTHPIS------------CLLLTTAISIKLGLVPFHYWFPEVLQGSSLTTGLLLATAMK---FPPMT-LFLLTSSSL 149
Cdd:PRK05777 186 FAGIAKALAdgsgnsllllfgLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaaFAVLLrLLVVAFGGL 265

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533 150 NPT---LLTTMAIASTALGGWAGLNQTQTRKILAFSSISHLGWMTAIILYNPKLTLIS--FYL--YCAMTTAIFLTL--- 219
Cdd:PRK05777 266 SEDwqqVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYSAvlFYLlaYLFMTLGAFGVIsll 345

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533 220 -----KTTKILKLSSMmaAWTKiPPLNGALLLALLSLAGLPPLTGFLPKWLIIHELTKQEMTPTATVIALLSLLGLFFYL 294
Cdd:PRK05777 346 rrkggEAESISDFAGL--SKRS-PLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYL 422


                 ..
gi 400296533 295 RL 296
Cdd:PRK05777 423 RV 424
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-267 1.38e-21

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 93.15  E-value: 1.38e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533   23 SNHWAMAWTGLEINTLAILPLIA-KSHHPRAIEAATKYFLTQAAASTLLLFSSTINAWFTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533   91 HPISCLLLTTAISIKLGLVPFHYWFPEVLQGSSLTTGLLLA-TAMKFPP-----MTLFLLTSSSLNPTLLTTMAIASTAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGyglirRSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533  165 GGWAGLNQTQTRKILAFSSISHLGWMTAIIL----YNPKLTLISFYLYCAMTTAIFL-----TLKTTKILKLSSMMAAWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|..
gi 400296533  236 KIPPLNGALLLALLSLAGLPPLTGFLPKWLII 267
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLIL 272
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 8-296 1.86e-20

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 92.00  E-value: 1.86e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533   8 IFSLSLILGTTITITSNHWAMAWTGLEINTLAILPLIA-KSHHPRAIEAATKYFLTQAAASTLLLFSSTINAWFTGQWDI 86
Cdd:MTH00199 101 ILILIVALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSI 180

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533  87 ----TQLTHPISCLLLTTAISIKLGLVPFHYWFPEVLQGSSLTTGLLLATAMKFPPMTLFLLTSSSLNPTLLTtmAIAST 162
Cdd:MTH00199 181 qginSILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSI 258

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533 163 ALGGWAGLNQTQTRKILAFSSISHLGWMTAIILYNP----KLTLISFYLYCAMTTAIF---LTLKTTK--ILKLSSMMaa 233
Cdd:MTH00199 259 IYGAIGALNQTKIKRLLAYSGIGHMGFILFGVAIGSfesiQASLIYMIIYVIMSICSFsiiLSLKLTKglIVEVSGLS-- 336

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 400296533 234 wTKIPPLNGALLLALLSLAGLPPLTGFLPKWLIIHELTKQEMTPTATVIALLSLLGLFFYLRL 296
Cdd:MTH00199 337 -RKNPVIALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-297 1.02e-19

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 89.62  E-value: 1.02e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533   14 ILGTTITITSNHWAMAWTGLEINTLAILPLIA-KSHHPRAIEAATKYFLTQAAASTLLLFSSTINAWFTGQWDITQLTHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533   93 ------------ISCLLLTTAISIKLGLVPFHYWFPEVLQGSSLTTGLLLATAMK----FPPMTLFLLTSSSLNPT---L 153
Cdd:TIGR01770 192 lsngmlnislllLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaifAVFLRLFLYILFGFSEAwqiF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533  154 LTTMAIASTALGGWAGLNQTQTRKILAFSSISHLGW-MTAIILYNPKLTLISFY---LYCAMTTAIFLTL------KTTK 223
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYiLIGLLAGTLEGIKAVLFyifIYALMSLGAFGVLsllrsyKDEW 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 400296533  224 ILKLSSMMAAWTKIPPLNGALLLALLSLAGLPPLTGFLPKWLIIHELTKQEMTPTATVIALLSLLGLFFYLRLA 297
Cdd:TIGR01770 352 IEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 13-296 1.27e-15

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 77.49  E-value: 1.27e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533  13 LILGTTITITSNHWAMAWTGLEINTLAILPLIAKSHHPRAIEAATKYFLTQAAASTLLLFSSTINAWFTGQWDITQLTHP 92
Cdd:COG0651  116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAAR 195

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533  93 IS----------CLLLTTAISIKLGLVPFHYWFPE-----------VLQGSSLTTGL--LLATAMKFPPMTLFLLTSssl 149
Cdd:COG0651  196 LAeldpglllaaFALLLVGFGIKAALFPLHFWLPDaypaapspvsaLLSGLLTKVGVyaILRVLTLLFGADPALFLG--- 272

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533 150 npTLLTTMAIASTALGGWAGLNQTQTRKILAFSSISHLGWMTAIILYNPKLTLISFYLYCA----MTTAIFLT----LKT 221
Cdd:COG0651  273 --TLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLLnhalAKALLFLAagaiERA 350

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 400296533 222 TKILKLSSMMAAWTKIPPLNGALLLALLSLAGLPPLTGFLPKWLIIHELTKQEMTPTATVIALLSLLGLFFYLRL 296
Cdd:COG0651  351 TGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 9-190 7.91e-15

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 75.28  E-value: 7.91e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533   9 FSLSLI--LGTTITITSNHWAMAWTGLEINTLAILPLIAKSHHPRAI---------EAATKYFLTQAAASTLLLFSSTIN 77
Cdd:MTH00198 191 FALVLIvgLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALY 270

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533  78 AWFTGQ--------------WDITQLTHPISCLLLTTAISIKLGLVPFHYWFPEVLQGSSLTTGLLLATAMKFppMTLFL 143
Cdd:MTH00198 271 FGFTGNegmlgtilsatletTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--TVYIL 348

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 400296533 144 LTSSSLNPTLLTTMAIASTALGGWAGLNQTQTRKILAFSSISHLGWM 190
Cdd:MTH00198 349 LTSLVITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFI 395
ndhB CHL00049
NADH dehydrogenase subunit 2
 7-221 2.54e-09

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 58.48  E-value: 2.54e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533   7 LIFSLSLILGTTITITSNHWAMAWTGLEINTLAILPLIAKSHHP-RAIEAATKYFLTQAAASTLLL--FSstinaWFTGQ 83
Cdd:CHL00049 114 LLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTKKDvRSNEATMKYLLMGGASSSILVygFS-----WLYGL 188

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533  84 -------WDI------TQLTHPISCLL----LTTAISIKLGLVPFHYWFPEVLQGS-----------SLTTGLLLATAMk 135
Cdd:CHL00049 189 sggeielQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTPDVYEGSptpvvaflsvtSKVAASALATRI- 267

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533 136 fppMTLFLLTSSSLNPTLLTTMAIASTALGGWAGLNQTQTRKILAFSSISHLGW-MTAIILYNPKLTLISFYLYcaMTTA 214
Cdd:CHL00049 268 ---FDIPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYvIIGIIVGDSNDGYASMITY--MLFY 342


                 ....*..
gi 400296533 215 IFLTLKT 221
Cdd:CHL00049 343 IFMNLGT 349
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-307 7.56e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 56.81  E-value: 7.56e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533  33 LEINTLAILPLIAKSHHPRAIEAATKYFLTQAAASTLLLFSSTINAWFTGQWDITQLTH--PISCLLLT------TAISI 104
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAGalAENPTVVTafgfvlLALAL 214

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533 105 KLGLVPFHYWFPEVLQG-SSLTTGLLLATAMKFPPMTLFLLTSSSLNP---------TLLTTMAIASTALGGWAGLNQTQ 174
Cdd:PRK08375 215 KAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAVYALIRIYFTVFGGdfrfalglgWLLAVLALLSMLVGSLAALGQDD 294

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533 175 TRKILAFSSISHLGWM------------TAIILY--NPKLTLISFYLycaMTTAIFLTLKTTKILKLSSMMaawTKIPPL 240
Cdd:PRK08375 295 VKRVLAYSTVSQMGYIllglalltplalAAGLLHllHHALMKGALFL---AAGAIEVTYGTRRLSELSGLG---RRMPLT 368

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 400296533 241 NGALLLALLSLAGLPPLTGFLPKWLIIHELTKQEMTPTATVIALLSLLGLFFYLRLAYCATITLPPN 307
Cdd:PRK08375 369 AAAFAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWYRAFFGPPPP 435
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 49-192 5.96e-08

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 53.93  E-value: 5.96e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533  49 HPRAIEAATKYFLTQAAASTLLLFSSTINAWFTGQW--DITQLT-HPIS-------CLLLTTAISIKLGLVPFHYWFPEV 118
Cdd:COG1008  156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAaAPLPltaqlllFLAFFIAFAVKVPMFPFHTWLPDA 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533 119 LQ-----GSSLTTGLLLATA----MKFPpMTLFLLTSSSLNPTLLTtMAIASTALGGWAGLNQTQTRKILAFSSISHLGW 189
Cdd:COG1008  236 HVeaptaGSVLLAGVLLKMGgyglLRFA-LPLFPEASAYFAPLLAA-LGVIGIIYGALVALAQTDLKRLIAYSSVSHMGF 313


                 ...
gi 400296533 190 MTA 192
Cdd:COG1008  314 VLL 316
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-313 7.30e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 50.87  E-value: 7.30e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533  33 LEINTLAILPLIA-KSHHPRAIEAATKYFLTQAAASTLLLFSSTInawFTGQWDI-------------TQLTHPISCLLL 98
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGIAL---LYGQYGTlnmaylavkmsenPTVVAKIALALF 226

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533  99 TTAISIKLGLVPFHYWFPEVLQG--SSLTTGLLLATAMKFPPM--TLFLLTSSSLNPT----LLTTMAIASTALGGWAGL 170
Cdd:PRK08376 227 IAGLAMKSGAVPVHMWLPDAYPAapSSISAMLLVIKQAGLYALarVLFSIYGPAINLAtvgwVIIILGCLTMFVGVAMAV 306

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533 171 NQTQTRKILAFSSISHLGWM---TAIILYNPKLTLISFYLYCAMTTAIFLTLKTTKILKLSSMMAAWT------------ 235
Cdd:PRK08376 307 VQKDVKRLLAYHSVSQIGYMllgLGVGLAALGDPAMASYGEIALAGGIYHIVNHALYKALLFLTAGAViyetgtrnlnel 386

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533 236 -----KIPPLNGALLLALLSLAGLPPLTGFLPKWLIIHelTKQEMTPTATVIALL-SLLGLFFYLRLAYcaTITLPPNST 309
Cdd:PRK08376 387 gglarTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYE--SSALFNPILGVIAMIgSVLTLASFVKVFH--TAFFGPPSE 462


                 ....
gi 400296533 310 NYMK 313
Cdd:PRK08376 463 KVMN 466
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-191 1.41e-06

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 49.55  E-value: 1.41e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533   50 PRAIEAATKYFLTQAAASTLLLFSSTINAWFTGQ-WDITQL-THPISC-------LLLTTAISIKLGLVPFHYWFPEV-- 118
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGtFDLLELlNLPLPFgvqtwlfLAFFIAFAVKVPLFPLHTWLPDAhv 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533  119 ---LQGSSLTTGLLLATA----MKFpPMTLFLLTSSSLNPtLLTTMAIASTALGGWAGLNQTQTRKILAFSSISHLGWMT 191
Cdd:TIGR01972 232 eapTAGSVILAGVLLKMGtygfLRF-NLPLFPDASLYFAP-VLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVL 309
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-263 1.72e-06

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 49.66  E-value: 1.72e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533  50 PRAIEAATKYFLTQAAASTLLLF-----------SSTINAWFTGQWDITQLTHPISCLLLTTAISIKLGLVPFHYWFPEV 118
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYgssllyglsggSTQLSAIALALITSPSLGLALALVFVIAGIAFKISAVPFHQWTPDV 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533 119 LQGSSLTTGLLLATAMK---FPPMTLFLLTSSSLNPT----LLTTMAIASTALGGWAGLNQTQTRKILAFSSISHLGW-M 190
Cdd:PRK02504 237 YEGSPTPVVAFLSVGSKaagFALAIRLLVTAFPSFDEqwklLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFvM 316

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533 191 TAIIL-----YNPKLTLISFYLY---CAMTTAIFLTLKTTKIlKLSSMMAAWTKIPPLNGALLLALLSLAGLPPLTGFLP 262
Cdd:PRK02504 317 IGLVAgteagYASMVFYLLAYLFmnlGAFACVILFSLRTGTD-QISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGFFG 395


                 .
gi 400296533 263 K 263
Cdd:PRK02504 396 K 396
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 13-190 3.91e-06

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 48.21  E-value: 3.91e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533  13 LILGTTITITSNHWAMAWTGLEINTLAILPLIAKSHHPRAIEAATKYFLTQAAA------STLLLFSSTINAWFTGQWDI 86
Cdd:PRK08676 111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533  87 TQLTHP----------ISCLLLTTAISIKLGLVPFHYWFPEVLQG-----SSLTTGLLLATAMKFPPMTLFLLTSSSLNP 151
Cdd:PRK08676 191 TELAAHasllspsvlgASFLFIFIGFLAKSGLVPFHTWLPAAYAKapsvvSALLSGTVLNIGIYGILRLSALLRQSGAAE 270

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 400296533 152 T---LLTTMAIASTALGGWAGLNQTQTRKILAFSSISHLGWM 190
Cdd:PRK08676 271 QfsnVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLM 312
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 20-191 2.18e-05

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 46.08  E-value: 2.18e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533  20 TITSNHWAMAWTGLEINTLAILPLIAKSHHPRAIEAATKYFL------TQAAASTLLLFSS----TINAWFTGQW-DITQ 88
Cdd:PRK06458 124 ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIicsvgvAFALFGTILVYANaatvMGDGEMAILWtELLK 203

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533  89 LTHPISCLLLTTAISI-------KLGLVPFHYWFPEVLQG-----SSLTTGLLLATAMkFPPMTLFLLTSSSLNP----T 152
Cdd:PRK06458 204 HASLLDPTLMKLAFVFlligfgtKVGLFPMHAWLPDAHSEapspvSALLSGVLLNVAL-YAVLRYYILIDAAIGSdfpgR 282

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 400296533 153 LLTTMAIASTALGGWAGLNQTQTRKILAFSSISHLGWMT 191
Cdd:PRK06458 283 LLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIA 321
PRK12650 PRK12650
DUF4040 family protein;
29-304 4.17e-05

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 45.42  E-value: 4.17e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533  29 AWtglEINTLAILPLIAKSHhPRAIEAATKYFLTQAAASTLLLFSSTINAWFTGQWDI------------TQLTHPISCL 96
Cdd:PRK12650 138 AW---ELVSLASFFLIARSG-SGGEAGSIRTLILTFFGGLTLLAAVAIAATQTGTTSLsgilhsdvwaekPGLTTVVAVL 213

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533  97 LLTTAISiKLGLVPFHYWFPEVLQGSSLTTGLLLATAMKFPPMTLFLLTSSSL--NPT---LLTTMAIASTALGGWAGLN 171
Cdd:PRK12650 214 IAVAAFT-KSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFhdVAVwnwLLIIVGMITALMGAVFAVQ 292

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533 172 QTQTRKILAFSSISHLGWMTAIILYNPKLtlisfylycAMTTAIFLTLK--------------------TTKILKLSSMm 231
Cdd:PRK12650 293 KTDLKKLTAYSTVSQLGWIVATIGVGTPF---------ALTAAVVHTLAhalfksslfmligvvdhqagTRDIRRLGSL- 362

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 400296533 232 aaWTKIPPLNGALLLALLSLAGLPPLTGFLPKWLIIHELTKQEMtPTATVIALLSLLGLFFYLRLAYCATITL 304
Cdd:PRK12650 363 --WRRMPFTFVSVTIAALSMAAVPPLFGFVSKEGMLTAFLEAPG-GNAGVVLLLVGAALGAVFTFAYSARLVL 432
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 43-191 4.93e-05

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 44.81  E-value: 4.93e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533  43 LIAKSHHPRAIEAATKYFLTQAAASTLLLFS----STINAWFTGQWDITQL-THPIS---------CLLLttAISIKLGL 108
Cdd:PRK05846 150 LIGVWGGKNRIYAATKFFLYTLLGSLLMLVAiiylVVVYYNATGTFDIADLlNLPLPpgvqywlflAFFI--AFAVKMPM 227

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533 109 VPFHYWFPEVLQ-----GSSLTTGLLLATA----MKFPpMTLFLLTSSSLNPtLLTTMAIASTALGGWAGLNQTQTRKIL 179
Cdd:PRK05846 228 FPLHTWLPDAHVqaptaGSVLLAGILLKMGayglLRFS-LPLFPDASHEFAP-IIITLGVIAIIYGALVALAQTDIKKLI 305

                        170
                 ....*....|..
gi 400296533 180 AFSSISHLGWMT 191
Cdd:PRK05846 306 AYSSISHMGFVT 317
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 96-194 5.74e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 44.91  E-value: 5.74e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533  96 LLLTTAISiKLGLVPFHYWFPEVLQGSSLTTGLLLATAM---------KFPPMtlfLLTSSSLNPTLLTtMAIASTALGG 166
Cdd:PRK12644 208 LILVGALS-KSAIVPFHFWLPGAMAAPTPVSAYLHAAAMvkagiylvaRLAPG---FADVPVWRPTVLV-LGLATMLLGG 282

                         90       100
                 ....*....|....*....|....*...
gi 400296533 167 WAGLNQTQTRKILAFSSISHLGWMTAII 194
Cdd:PRK12644 283 WRALRQHDLKLILAYGTVSQLGFLTVLV 310
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
38-190 1.81e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 43.15  E-value: 1.81e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533  38 LAILPL---IAKSHHPRAIEAATKYFLTQAAASTLLLFSSTINAWFTG--QWDITQL---THPISCLLLTTA-----ISI 104
Cdd:PRK06473 138 LELIPLyllIAIWGGQRRGYAATKFLLYTAISGILILVSFLGLVWLSGasSFDYEPLrshTLPLSTQLLLLApilvgFGI 217

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533 105 KLGLVPFHYWFPEVLQGSSLTTGLLLATAM---------KFPpMTLFLLTSSSLNPTLlTTMAIASTALGGWAGLNQTQT 175
Cdd:PRK06473 218 KIPLVPFHTWLPDAHVEASTPVSVLLAGVLlklgtygllRFG-VGLFPEAWVYLAPWL-ATWAVVSVLYGASCAIAQKDM 295

                        170
                 ....*....|....*
gi 400296533 176 RKILAFSSISHLGWM 190
Cdd:PRK06473 296 KKMVAYSSIGHMGYI 310
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 291-340 7.62e-04

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 36.85  E-value: 7.62e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 400296533  291 FFYLRLAYCATITLPPNSTNYMKQWQTKKPV-AIFTTISVTTTMTLLPLSP 340
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKnTLLLPTLTTLSILLLPLTP 51
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 2-298 9.57e-04

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 41.14  E-value: 9.57e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533   2 NPQAKLIFSLSLILGTTITITSNHWAMAWTGLEINTLAILPLIAKSHHpRAIEAATKYFLTQAAASTLLLFSSTINAWFT 81
Cdd:PRK08668  96 NDAYFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKT 174

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533  82 GQWDIT-------QLTHP----ISCLLLTTAISIKLGLVPFHYWFPEVLQG-----SSLTTGLLLATAMKFPPMTLFLLT 145
Cdd:PRK08668 175 GTFDFAdisqgliNDTSTgfalIVFLFLLAFGVAKAGIFPLHVWAPDAYSEapqsfSAVLSGQLSKLGAYGFLLVLYVLP 254

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533 146 SSSLNPTLLTTMAIA------------STALGGWAGLNQTQTRKILAFSSISHLGW-------MTAIILYNPKLTLISFY 206
Cdd:PRK08668 255 GTKLFSEFGTYRGVPlfnyilawlgniSIIVGTLMAILQEDIKKLIAYSSVANGGYilvglglGTSLGFAGGLFHVFNHA 334

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533 207 LYCAMttaIFLTLKT----TKILKLSSMMAAWTKIPPLNGALLLALLSLAGLPPLTGFLPKWLIIHELTKQEMTPTATVI 282
Cdd:PRK08668 335 LFKGL---FFLIFAAviyrTGTTKISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMA 411

                        330
                 ....*....|....*.
gi 400296533 283 ALLSLLGLFFYLRLAY 298
Cdd:PRK08668 412 FFGSIGSFLYVFRPLA 427
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
4-190 1.19e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 40.45  E-value: 1.19e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533   4 QAKLIFSLSLILGT-TITITSNHWAM---AW--TGLEINTLailpLIAKSHHPRAIEAATKYFLTQAAASTLLLFSSTIN 77
Cdd:PRK08168  99 QRRYVRALAGVLAAvHLLVLSDHLLVliaAWaaISLALHRL----LCFYPDRPFARLAAHKKFIADRLAELLLLAAAALA 174

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533  78 AWFTGQWDITQL--------THP---ISCLLLTTAISIKLGLVPFHYWFPEVLQGSSLTTGLLLA--------TAMKFPP 138
Cdd:PRK08168 175 YLEVGSLSLSALwahlaaqgASPslqAAALLLVLAVILKTAQLPVHGWLIQVMEAPTPVSALLHAgvvnlggfVLIRFAP 254

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 400296533 139 mtlfLLTSSSLNPTLLTTMAIASTALGGWAGLNQTQTRKILAFSSISHLGWM 190
Cdd:PRK08168 255 ----LLEQAPPARWLLVLVGLATAVLAGLVMLTRISIKVRLAWSTVAQMGFM 302
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 48-192 1.21e-03

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 40.52  E-value: 1.21e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533  48 HHPRAIEAATKYFLTQAA------ASTLLLFS-------STINAWFTGQWDITQLThPISCLLLTTAISiKLGLVPFHYW 114
Cdd:COG1009  156 EKPSARRAARKAFLVTRVgdlgllLGILLLGAiagtlnfSELLAAAPTILSSPLLT-LILLLLLLGAFG-KSAQFPLHFW 233

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533 115 FPEVLQGSSLTTGLLLATAM---------KFPPmtLFLLTssslnPTLLTTMAI--ASTAL-GGWAGLNQTQTRKILAFS 182
Cdd:COG1009  234 LPDAMEGPTPVSALLHAATMvkagvyllaRLSP--LFALS-----PVWLTVVAIigAITALfAALIALAQTDIKRVLAYS 306

                        170
                 ....*....|
gi 400296533 183 SISHLGWMTA 192
Cdd:COG1009  307 TVSQLGYMFL 316
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 59-196 2.58e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 39.71  E-value: 2.58e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533  59 YFLTQAAASTLLLFSSTINAWF-TGQWDITQLTHP-----ISCLLLTTAISIKLGLVPFHYWFPEVLQG-----SSLTTG 127
Cdd:PRK08667 166 FYFVMTQLSTVFLMLGIIVLFIqTGSFELSPLGASagilsLVFLLLFLGFGIKAGIIPFHKWLPYAHPAspsnvSALMSG 245

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 400296533 128 LLLATAM-KFPPMTLFLLTSSSLNPTLLTTMAIASTALGGWAGLNQTQTRKILAFSSISHLG-WMTAIILY 196
Cdd:PRK08667 246 VMLKVAVyGLVRFLMDVLSPELWWGVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGiILMGIGLY 316
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-188 4.00e-03

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 38.86  E-value: 4.00e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533  55 AATKYFLTQAAASTLLLFSSTINAWFTGQ--WDITQLTH---PISCLLLT-----TAISIKLGLVPFHYWFPEVLQGSSL 124
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGAksyPLALELLLyagflIAFGVKLPIFPLHTWLPDAHGEASA 217

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 400296533 125 TTGLLLA-TAMKFPPMTLFLLTSSSLNPT------LLTTMAIASTALGGWAGLNQTQTRKILAFSSISHLG 188
Cdd:PRK12561 218 PVSMILAgVLLKMGGYALIRFNVQMLPDAhvyfapALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMG 288
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
52-190 4.23e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 38.85  E-value: 4.23e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533  52 AIEAATKYFLTQAAASTLLLFSSTINAWFTGQWDITQLTHPISCLLLTTAISIKLGLV----------------PFHYWF 115
Cdd:PRK07376 171 AADAAQKAFVVNRVGDFGLLLGILGLFWATGSFDFDGIADRLSELVSSGAVSGWLALLlcilvflgpmaksaqfPLHVWL 250

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533 116 PEVLQGSSLTTGLLLATAM----------KFPPMTLFlltssslnPTLLTTMAI--ASTA-LGGWAGLNQTQTRKILAFS 182
Cdd:PRK07376 251 PDAMEGPTPISALIHAATMvaagvflvarMYPVFEQF--------PAVMTVIAWtgAITAfLGASIALTQNDIKKGLAYS 322


                 ....*...
gi 400296533 183 SISHLGWM 190
Cdd:PRK07376 323 TISQLGYM 330
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 92-194 7.16e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 38.40  E-value: 7.16e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533  92 PISCLLLTTAI--SIKLGLvpfHYWFPEVLQGSSLTTGLLLATAMKFPPMTLF-----LLTSSSLNPTLLTTMAIASTAL 164
Cdd:MTH00032 226 IIGILLLIGCIgkSAQLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLMirsfpLFEKAPLTLLIITIFGALTAFF 302

                         90       100       110
                 ....*....|....*....|....*....|
gi 400296533 165 GGWAGLNQTQTRKILAFSSISHLGWMTAII 194
Cdd:MTH00032 303 AATVGLVQNDLKKVIAYSTCSQLGYMVLII 332
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 48-196 7.50e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 38.27  E-value: 7.50e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533  48 HHPRAIEAATKYFLTQAAASTLLLFSSTINAWFTGQWDITQLTHPISC--------LLLTTAISIKLGLV------PFHY 113
Cdd:PRK12649 156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSELienikghpLFLITLILIFIGAAaksaqgPFYI 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533 114 WFPEVLQGSSLTTGLLLATAMKFPPMTLFLLTSSSLNPT-----LLTTMAIASTALGGWAGLNQTQTRKILAFSSISHLG 188
Cdd:PRK12649 236 WLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQLA 315


                 ....*...
gi 400296533 189 WMTAIILY 196
Cdd:PRK12649 316 YLMTMYGY 323
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-267 8.97e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 37.79  E-value: 8.97e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533  33 LEINTLAILPLIAKSHHPRAIEAATKYFLTQAAASTLLLFSSTINAWFTGQWDITQL-----------THPISCLLLTTA 101
Cdd:PRK12662 139 LEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGIGFLYAITGTLNMGDMfliiqdlptnrAIQIGVLFIMVG 218

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533 102 ISIKLGLVPFHYWFPEVLQGS-SLTTGLLLATAMKFPPMTL-----------FLLTSSSLNpTLLTTMAIASTALGGWAG 169
Cdd:PRK12662 219 LFIKAALFPFHKWLIQAYSEApSFISVFFSGTSTKVMIYLIirivydvfkanFVFTTLPFN-NVFMILAALAIVFGSVLA 297

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400296533 170 LNQTQTRKILAFSSISHLGWMTAIILYNPKLTLISFYLYCA----MTTAIFLT-------LKTTKILKLSSMmaaWTKIP 238
Cdd:PRK12662 298 ILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVnhsiVKSALFMVsgsisyhFGTTKLEDCLNL---WKSMP 374

                        250       260
                 ....*....|....*....|....*....
gi 400296533 239 PLNGALLLALLSLAGLPPLTGFLPKWLII 267
Cdd:PRK12662 375 KITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH