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Conserved domains on  [gi|401833375|gb|AFQ23051|]
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A kinase anchor protein 9, partial [Lialis burtonis]

Protein Classification

coiled-coil domain-containing protein( domain architecture ID 1000095)

coiled-coil domain-containing protein contains a region with alpha-helical coiled-coil sequence signatures that is being annotated by a variety of protein family models, not necessarily indicating family membership

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SMC_prok_B super family cl37069
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 54-405 5.75e-07

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


The actual alignment was detected with superfamily member TIGR02168:

Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 51.98  E-value: 5.75e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375    54 QNQVEDLCQELSSAKEQIQRAKQTINEKETKLQESKELLICVGDLKSKLASAAEAQKELELKHEAEVTNYKIKLEMLEKE 133
Cdd:TIGR02168  676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKE 755

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375   134 KNAVLDRMAEsLEAELERLRTQLLfSHEEELTKLREDLQQeHRINIDNLKDNLRMQHKQ--QLDGLQNDMTKKIEAVKLE 211
Cdd:TIGR02168  756 LTELEAEIEE-LEERLEEAEEELA-EAEAEIEELEAQIEQ-LKEELKALREALDELRAEltLLNEEAANLRERLESLERR 832

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375   212 NDDLIIKQNQLMSEISRLKDlQQAMVNLRSEEMMLKIHELEKEIEILGQEKKEkgmLEQEVKELQLKIESLEKQRKEKEA 291
Cdd:TIGR02168  833 IAATERRLEDLEEQIEELSE-DIESLAAEIEELEELIEELESELEALLNERAS---LEEALALLRSELEELSEELRELES 908

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375   292 NHQEKCTLLETQNKVLEDENN*LQDklKKYAVMNIEESLIVDSISPNSQDFDLQKRIEDLIAENERLVKQdivlkeeIEK 371
Cdd:TIGR02168  909 KRSELRRELEELREKLAQLELRLEG--LEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKR-------LEN 979

                          330       340       350
                   ....*....|....*....|....*....|....
gi 401833375   372 QKKSLSLVEKNFERSYQELREEYVSLLKVKSDLE 405
Cdd:TIGR02168  980 KIKELGPVNLAAIEEYEELKERYDFLTAQKEDLT 1013
 
Name Accession Description Interval E-value
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 54-405 5.75e-07

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 51.98  E-value: 5.75e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375    54 QNQVEDLCQELSSAKEQIQRAKQTINEKETKLQESKELLICVGDLKSKLASAAEAQKELELKHEAEVTNYKIKLEMLEKE 133
Cdd:TIGR02168  676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKE 755

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375   134 KNAVLDRMAEsLEAELERLRTQLLfSHEEELTKLREDLQQeHRINIDNLKDNLRMQHKQ--QLDGLQNDMTKKIEAVKLE 211
Cdd:TIGR02168  756 LTELEAEIEE-LEERLEEAEEELA-EAEAEIEELEAQIEQ-LKEELKALREALDELRAEltLLNEEAANLRERLESLERR 832

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375   212 NDDLIIKQNQLMSEISRLKDlQQAMVNLRSEEMMLKIHELEKEIEILGQEKKEkgmLEQEVKELQLKIESLEKQRKEKEA 291
Cdd:TIGR02168  833 IAATERRLEDLEEQIEELSE-DIESLAAEIEELEELIEELESELEALLNERAS---LEEALALLRSELEELSEELRELES 908

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375   292 NHQEKCTLLETQNKVLEDENN*LQDklKKYAVMNIEESLIVDSISPNSQDFDLQKRIEDLIAENERLVKQdivlkeeIEK 371
Cdd:TIGR02168  909 KRSELRRELEELREKLAQLELRLEG--LEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKR-------LEN 979

                          330       340       350
                   ....*....|....*....|....*....|....
gi 401833375   372 QKKSLSLVEKNFERSYQELREEYVSLLKVKSDLE 405
Cdd:TIGR02168  980 KIKELGPVNLAAIEEYEELKERYDFLTAQKEDLT 1013
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 31-296 1.14e-06

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 51.09  E-value: 1.14e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375  31 QREKMRQDLTQQLEEITSEKSSLQNQVEDLCQELSSAKEQIQRAKQTINEKETKLQESKELLIcvgDLKSKLASAAEAQK 110
Cdd:COG1196  236 ELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELA---RLEQDIARLEERRR 312

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375 111 ELELKHEAEVTNYKIKLEMLEKEKNAVLDRMAESLEAELERLRTQLLFSHEEELTKLREDLQQEHRINIDNLKDNLRMQH 190
Cdd:COG1196  313 ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEAL 392

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375 191 KQQLDGLQndmtkKIEAVKLENDDLIIKQNQLMSEISRLKDLQQAMVNLRSEEMMLKIHELEKEIEILGQEKKEKGMLEQ 270
Cdd:COG1196  393 RAAAELAA-----QLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAE 467

                        250       260
                 ....*....|....*....|....*.
gi 401833375 271 EVKELQLKIESLEKQRKEKEANHQEK 296
Cdd:COG1196  468 LLEEAALLEAALAELLEELAEAAARL 493
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
 47-413 8.77e-05

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 44.73  E-value: 8.77e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375   47 TSEKSSLQNQVEDLCQELSSAKEQIQRAKQTINEKETKLQESKELLICVgDLKSKLASaAEAQKELELKHEAEVTnykik 126
Cdd:pfam17380 264 TMTENEFLNQLLHIVQHQKAVSERQQQEKFEKMEQERLRQEKEEKAREV-ERRRKLEE-AEKARQAEMDRQAAIY----- 336

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375  127 lemlekeknAVLDRMAESLEAELERLRtqllfsHEEELTKLREDLQQEHRINIDNLKDNLRMQ-HKQQLDGLQNDMTKKI 205
Cdd:pfam17380 337 ---------AEQERMAMERERELERIR------QEERKRELERIRQEEIAMEISRMRELERLQmERQQKNERVRQELEAA 401

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375  206 EAVKLENDDLIIKQNQLMSEISRLKDLQQamvNLRSEEMMLKIHELEKEIEILGQEKKEKgmlEQEVKELQLKIESLEKQ 285
Cdd:pfam17380 402 RKVKILEEERQRKIQQQKVEMEQIRAEQE---EARQREVRRLEEERAREMERVRLEEQER---QQQVERLRQQEEERKRK 475

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375  286 RKEKEANHQEKCTLLETQNKVLEDENn*lqdKLKKYAVMNIEESLIVDSISPNSQDFDLQKRIEDLIAENERLVKQDIVL 365
Cdd:pfam17380 476 KLELEKEKRDRKRAEEQRRKILEKEL-----EERKQAMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEE 550

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*...
gi 401833375  366 KEEIEKQKKSLSLveknfERSYQELREEYVSLLKVKSDLENKKNEQES 413
Cdd:pfam17380 551 RRRIQEQMRKATE-----ERSRLEAMEREREMMRQIVESEKARAEYEA 593
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
33-427 1.56e-04

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 44.26  E-value: 1.56e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375  33 EKMRQDLTQQLEEITSEKSSLQNQVEDLCQELSSAKEQIQRAKQTINEKETKLQESKELLICVGDLKSKLAsAAEAQKEl 112
Cdd:PRK02224 198 EKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIA-ETERERE- 275

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375 113 elKHEAEVTNYKIKLEMLEKEKNAVLDrmaeslEAELERLRTQLLFSHEEELTKLREDLQ---QEHRINIDnlkdnlrmQ 189
Cdd:PRK02224 276 --ELAEEVRDLRERLEELEEERDDLLA------EAGLDDADAEAVEARREELEDRDEELRdrlEECRVAAQ--------A 339

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375 190 HKQQLDGLqndmTKKIEAVKLENDDLIIKQNQLMSEisrlkdLQQAMVNLRSEEMmlKIHELEKEIEILgqeKKEKGMLE 269
Cdd:PRK02224 340 HNEEAESL----REDADDLEERAEELREEAAELESE------LEEAREAVEDRRE--EIEELEEEIEEL---RERFGDAP 404

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375 270 QEVKELQLKIESLEKQRKEKEANHQEKCTLLETQNKVLEdENN*LQDKLK-KYAVMNIEESLIVDSISpnsqdfDLQKRI 348
Cdd:PRK02224 405 VDLGNAEDFLEELREERDELREREAELEATLRTARERVE-EAEALLEAGKcPECGQPVEGSPHVETIE------EDRERV 477

                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 401833375 349 EDLIAENERLVKQDIVLKEEIEkQKKSLSLVEKNFERSyQELREEYVSLLKVKSDLENKKNEQESEYKAKLQALREEIQ 427
Cdd:PRK02224 478 EELEAELEDLEEEVEEVEERLE-RAEDLVEAEDRIERL-EERREDLEELIAERRETIEEKRERAEELRERAAELEAEAE 554
 
Name Accession Description Interval E-value
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 54-405 5.75e-07

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 51.98  E-value: 5.75e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375    54 QNQVEDLCQELSSAKEQIQRAKQTINEKETKLQESKELLICVGDLKSKLASAAEAQKELELKHEAEVTNYKIKLEMLEKE 133
Cdd:TIGR02168  676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKE 755

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375   134 KNAVLDRMAEsLEAELERLRTQLLfSHEEELTKLREDLQQeHRINIDNLKDNLRMQHKQ--QLDGLQNDMTKKIEAVKLE 211
Cdd:TIGR02168  756 LTELEAEIEE-LEERLEEAEEELA-EAEAEIEELEAQIEQ-LKEELKALREALDELRAEltLLNEEAANLRERLESLERR 832

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375   212 NDDLIIKQNQLMSEISRLKDlQQAMVNLRSEEMMLKIHELEKEIEILGQEKKEkgmLEQEVKELQLKIESLEKQRKEKEA 291
Cdd:TIGR02168  833 IAATERRLEDLEEQIEELSE-DIESLAAEIEELEELIEELESELEALLNERAS---LEEALALLRSELEELSEELRELES 908

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375   292 NHQEKCTLLETQNKVLEDENN*LQDklKKYAVMNIEESLIVDSISPNSQDFDLQKRIEDLIAENERLVKQdivlkeeIEK 371
Cdd:TIGR02168  909 KRSELRRELEELREKLAQLELRLEG--LEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKR-------LEN 979

                          330       340       350
                   ....*....|....*....|....*....|....
gi 401833375   372 QKKSLSLVEKNFERSYQELREEYVSLLKVKSDLE 405
Cdd:TIGR02168  980 KIKELGPVNLAAIEEYEELKERYDFLTAQKEDLT 1013
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 31-296 1.14e-06

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 51.09  E-value: 1.14e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375  31 QREKMRQDLTQQLEEITSEKSSLQNQVEDLCQELSSAKEQIQRAKQTINEKETKLQESKELLIcvgDLKSKLASAAEAQK 110
Cdd:COG1196  236 ELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELA---RLEQDIARLEERRR 312

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375 111 ELELKHEAEVTNYKIKLEMLEKEKNAVLDRMAESLEAELERLRTQLLFSHEEELTKLREDLQQEHRINIDNLKDNLRMQH 190
Cdd:COG1196  313 ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEAL 392

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375 191 KQQLDGLQndmtkKIEAVKLENDDLIIKQNQLMSEISRLKDLQQAMVNLRSEEMMLKIHELEKEIEILGQEKKEKGMLEQ 270
Cdd:COG1196  393 RAAAELAA-----QLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAE 467

                        250       260
                 ....*....|....*....|....*.
gi 401833375 271 EVKELQLKIESLEKQRKEKEANHQEK 296
Cdd:COG1196  468 LLEEAALLEAALAELLEELAEAAARL 493
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 15-236 1.26e-06

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 50.71  E-value: 1.26e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375  15 NIAINELNLMLQDANYQREKmRQDLTQQLEEITSEKSSLQNQVEDLCQELSSAKEQIQRAKQTINEKETKLQESKELLIC 94
Cdd:COG1196  291 YELLAELARLEQDIARLEER-RRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLE 369

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375  95 VGDLKSKLASAAEAQKELELKHEAEVTNYKIKLEMLEKEKNAVLDRMAESLEAELERLRTQLLFSHEEELTKLREDLQQE 174
Cdd:COG1196  370 AEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAE 449

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 401833375 175 HRINIDNLKDNLRMQHKQQLdglqndmtKKIEAVKLENDDLIIKQNQLMSEISRLKDLQQAM 236
Cdd:COG1196  450 EEAELEEEEEALLELLAELL--------EEAALLEAALAELLEELAEAAARLLLLLEAEADY 503
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 246-430 2.01e-06

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 50.32  E-value: 2.01e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375 246 LKIHELEKEIEILGQEKKEkgmLEQEVKELQLKIESLEKQRKEKEANHQEKCTLLETQNKVLEDENN*LQDKLKKYAVMN 325
Cdd:COG1196  218 LKEELKELEAELLLLKLRE---LEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELL 294

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375 326 IEESLIVDSISPNSQDF-DLQKRIEDLIAENERLVKQDIVLKEEIEKQKKSLSLVEKNFERSYQELREEYVSLLKVKSDL 404
Cdd:COG1196  295 AELARLEQDIARLEERRrELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAEL 374

                        170       180
                 ....*....|....*....|....*.
gi 401833375 405 ENKKNEQESEYKAKLQALREEIQHLQ 430
Cdd:COG1196  375 AEAEEELEELAEELLEALRAAAELAA 400
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 52-417 6.05e-06

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 48.91  E-value: 6.05e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375    52 SLQNQVEDLCQELSSAKEQIQRAKQTINEKETKLQESKELLicvgdlkSKLASAAEAQKELELKHEAEVTNYKIKLEMLE 131
Cdd:TIGR02169  678 RLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKI-------GEIEKEIEQLEQEEEKLKERLEELEEDLSSLE 750

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375   132 KEKNAVLDRMAEsLEAELERLrtqllfshEEELTKLREDLqqehriniDNLKDNLRMQHKQQLDGLQNDMTKKIEAVKLE 211
Cdd:TIGR02169  751 QEIENVKSELKE-LEARIEEL--------EEDLHKLEEAL--------NDLEARLSHSRIPEIQAELSKLEEEVSRIEAR 813

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375   212 NDDLIIKQNQLMSEISRLKDLQQAMVNLRsEEMMLKIHELEKEIEILgqeKKEKGMLEQEVKELQLKIESLEKQRKEKEA 291
Cdd:TIGR02169  814 LREIEQKLNRLTLEKEYLEKEIQELQEQR-IDLKEQIKSIEKEIENL---NGKKEELEEELEELEAALRDLESRLGDLKK 889

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375   292 NHQEkctlLETQNKVLEDENN*LQDKLkkyavmNIEESLIVDSISPNSQDFDLQKRIEDLIAENERLVKQDIVLkEEIEK 371
Cdd:TIGR02169  890 ERDE----LEAQLRELERKIEELEAQI------EKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSL-EDVQA 958

                          330       340       350       360
                   ....*....|....*....|....*....|....*....|....*.
gi 401833375   372 QKKSLSLVEKNFERSYQELREEYVSLLKVKSDLENKKNEQESEYKA 417
Cdd:TIGR02169  959 ELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKA 1004
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 37-254 1.40e-05

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 47.74  E-value: 1.40e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375    37 QDLTQQLEEITSEKSSLQNQVEDLCQELSSAKEQIQRAKQTINEKETKLQESKELLicvGDLKSKLASAAEAQKELELKH 116
Cdd:TIGR02168  291 YALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKL---EELKEELESLEAELEELEAEL 367

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375   117 EAEVTNYKIKLEMLEKEKNAV--LDRMAESLEAELERLRTQLlfsheEELTKLREDLQQEHRINIDNLKDNLRMQHKQQL 194
Cdd:TIGR02168  368 EELESRLEELEEQLETLRSKVaqLELQIASLNNEIERLEARL-----ERLEDRRERLQQEIEELLKKLEEAELKELQAEL 442

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375   195 DGLQNDMTKKIEAVKLENDDLIIKQNQLMSEISRLKDLQQAMVNLRSEEMMLKIHELEKE 254
Cdd:TIGR02168  443 EELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLE 502
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 57-372 2.10e-05

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 46.85  E-value: 2.10e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375  57 VEDLCQELSSAKEQIQR-AKQTinEKETKLQESKELLicvgDLKSKLASAAEAQKELELKhEAEVTNYKIKLEMLEKEKn 135
Cdd:COG1196  191 LEDILGELERQLEPLERqAEKA--ERYRELKEELKEL----EAELLLLKLRELEAELEEL-EAELEELEAELEELEAEL- 262

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375 136 AVLDRMAESLEAELERLRTQL------LFSHEEELTKLREDLQQEHRINIDNLKDNLRM-----QHKQQLDGLQNDMTKK 204
Cdd:COG1196  263 AELEAELEELRLELEELELELeeaqaeEYELLAELARLEQDIARLEERRRELEERLEELeeelaELEEELEELEEELEEL 342

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375 205 IEAVKLENDDLIIKQNQLMSEISRLKDLQQAMVNLRSEEMMLKIHELEKEIEILGQEKKEKGmLEQEVKELQLKIESLEK 284
Cdd:COG1196  343 EEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEE-LEEAEEALLERLERLEE 421

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375 285 QRKEKEANHQEKCTLLETQNKVLEDENN*LQDKLKKyavmniEESLIVDSISPNSQDFDLQKRIEDLIAENERLVKQDIV 364
Cdd:COG1196  422 ELEELEEALAELEEEEEEEEEALEEAAEEEAELEEE------EEALLELLAELLEEAALLEAALAELLEELAEAAARLLL 495


                 ....*...
gi 401833375 365 LKEEIEKQ 372
Cdd:COG1196  496 LLEAEADY 503
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 117-429 2.45e-05

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 46.97  E-value: 2.45e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375   117 EAEVTNYKIKLEMLEKEKNAVLDRMAEsLEAELERLRTQLLfSHEEELTKLREDLQQEHRINIDNLKDNLRMQHKQQLDG 196
Cdd:TIGR02168  669 NSSILERRREIEELEEKIEELEEKIAE-LEKALAELRKELE-ELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLE 746

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375   197 LQNDMT----KKIEAVKLENDDLIIKQNQLMSEISRLKDLQQAMVNLRSEEMMLKIHELEKEIEILGQEKKEKGMLEQEV 272
Cdd:TIGR02168  747 ERIAQLskelTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERL 826

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375   273 KELQLKIESLEKQRKEKEANHQEKCTLLETQNKVLEDEN---N*LQDKLKkyAVMNIEESLIVDSISPNSQDFDLQKRIE 349
Cdd:TIGR02168  827 ESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEeliEELESELE--ALLNERASLEEALALLRSELEELSEELR 904

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375   350 DLIAENERLVKQDIVLKEEIEKQKKSLSLVEKNFERSYQELREEYVSLLKVKSDLENKKNEQESEYKAKLQALREEIQHL 429
Cdd:TIGR02168  905 ELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKEL 984
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 91-320 3.03e-05

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 45.91  E-value: 3.03e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375  91 LLICVGDLKSKLASAAEAQKELElKHEAEVTNYKIKLEMLEKEKNAVLDRMAEsLEAELERLrTQLLFSHEEELTKLRED 170
Cdd:COG4942    8 ALLLALAAAAQADAAAEAEAELE-QLQQEIAELEKELAALKKEEKALLKQLAA-LERRIAAL-ARRIRALEQELAALEAE 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375 171 LQqEHRINIDNLKDNLRMQHK---QQLDGLQNDMTKKIEAVKLENDDLiikqNQLMSEISRLKDLQQAMVNLRsEEMMLK 247
Cdd:COG4942   85 LA-ELEKEIAELRAELEAQKEelaELLRALYRLGRQPPLALLLSPEDF----LDAVRRLQYLKYLAPARREQA-EELRAD 158

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 401833375 248 IHELEKEIEILGQEKKEKGMLEQEVKELQLKIESLEKQRKEKEANHQEKCTLLETQNKVLEDENN*LQDKLKK 320
Cdd:COG4942  159 LAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIAR 231
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 227-431 4.96e-05

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 45.14  E-value: 4.96e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375 227 SRLKDLQQAMVNLRSEemmlkIHELEKEIEILGQEKKEkgmLEQEVKELQLKIESLEKQRKEKEANHQEKCTLLETQNKV 306
Cdd:COG4942   27 AELEQLQQEIAELEKE-----LAALKKEEKALLKQLAA---LERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375 307 LEDENN*LQDKLKKYAVMNIEESLIVDSISPNSQDF------------DLQKRIEDLIAENERLVKqdivLKEEIEKQKK 374
Cdd:COG4942   99 LEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAvrrlqylkylapARREQAEELRADLAELAA----LRAELEAERA 174

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 401833375 375 SLslveKNFERSYQELREEYVSLLKVKSDLENKKNEQESEYKAKLQALREEIQHLQG 431
Cdd:COG4942  175 EL----EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEA 227
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
 47-413 8.77e-05

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 44.73  E-value: 8.77e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375   47 TSEKSSLQNQVEDLCQELSSAKEQIQRAKQTINEKETKLQESKELLICVgDLKSKLASaAEAQKELELKHEAEVTnykik 126
Cdd:pfam17380 264 TMTENEFLNQLLHIVQHQKAVSERQQQEKFEKMEQERLRQEKEEKAREV-ERRRKLEE-AEKARQAEMDRQAAIY----- 336

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375  127 lemlekeknAVLDRMAESLEAELERLRtqllfsHEEELTKLREDLQQEHRINIDNLKDNLRMQ-HKQQLDGLQNDMTKKI 205
Cdd:pfam17380 337 ---------AEQERMAMERERELERIR------QEERKRELERIRQEEIAMEISRMRELERLQmERQQKNERVRQELEAA 401

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375  206 EAVKLENDDLIIKQNQLMSEISRLKDLQQamvNLRSEEMMLKIHELEKEIEILGQEKKEKgmlEQEVKELQLKIESLEKQ 285
Cdd:pfam17380 402 RKVKILEEERQRKIQQQKVEMEQIRAEQE---EARQREVRRLEEERAREMERVRLEEQER---QQQVERLRQQEEERKRK 475

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375  286 RKEKEANHQEKCTLLETQNKVLEDENn*lqdKLKKYAVMNIEESLIVDSISPNSQDFDLQKRIEDLIAENERLVKQDIVL 365
Cdd:pfam17380 476 KLELEKEKRDRKRAEEQRRKILEKEL-----EERKQAMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEE 550

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*...
gi 401833375  366 KEEIEKQKKSLSLveknfERSYQELREEYVSLLKVKSDLENKKNEQES 413
Cdd:pfam17380 551 RRRIQEQMRKATE-----ERSRLEAMEREREMMRQIVESEKARAEYEA 593
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 57-392 1.13e-04

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 44.67  E-value: 1.13e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375    57 VEDLCQELSSAKEQIQRAKQTINEKETKLQESKELLicvGDLKSKLASAAEAQKELELKHEAEVTNYKIKLEMLEKEKNA 136
Cdd:TIGR02169  165 VAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQL---ERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEA 241

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375   137 VLDRMAEsLEAELERLrTQLLFSHEEELTKLREDLQQEHRiNIDNLKDNLRMQHKQQLDGLQNDMTK---KIEAVKLEND 213
Cdd:TIGR02169  242 IERQLAS-LEEELEKL-TEEISELEKRLEEIEQLLEELNK-KIKDLGEEEQLRVKEKIGELEAEIASlerSIAEKERELE 318

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375   214 DLIIKQNQLMSEISRLK------DLQQAMVNLRSEEMMLKIHELEKEIEIL----GQEKKEKGMLEQEVKELQLKIESLE 283
Cdd:TIGR02169  319 DAEERLAKLEAEIDKLLaeieelEREIEEERKRRDKLTEEYAELKEELEDLraelEEVDKEFAETRDELKDYREKLEKLK 398

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375   284 KQRKEKEANHQEKCTLLETQNKVLEDENN*LQDKLKKYAVMNIEESlivdsispnsqdfDLQKRIEDLIAENERLVKQDI 363
Cdd:TIGR02169  399 REINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKE-------------DKALEIKKQEWKLEQLAADLS 465

                          330       340
                   ....*....|....*....|....*....
gi 401833375   364 VLKEEIEKQKKSLSLVEKNFERSYQELRE 392
Cdd:TIGR02169  466 KYEQELYDLKEEYDRVEKELSKLQRELAE 494
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 30-310 1.41e-04

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 44.29  E-value: 1.41e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375    30 YQREKMRQDLTQQLEEITSEKSSLQNQVEDLCQELSSAKEQIQRAKQTINEKETKLQ-----ESKELLICVGDLKSKLAS 104
Cdd:TIGR02169  226 YELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKdlgeeEQLRVKEKIGELEAEIAS 305

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375   105 AAEAQKELEL---KHEAEVTNYKIKLEMLEKEKNAvLDRMAESLEAELERLRTQLLfSHEEELTKLREDLQQEHRINiDN 181
Cdd:TIGR02169  306 LERSIAEKEReleDAEERLAKLEAEIDKLLAEIEE-LEREIEEERKRRDKLTEEYA-ELKEELEDLRAELEEVDKEF-AE 382

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375   182 LKDNLrMQHKQQLDGLQNdmtkKIEAVKLENDDLIIKQNQLMSEISR----LKDLQQAMVNLRsEEMMLKIHELEKEIEI 257
Cdd:TIGR02169  383 TRDEL-KDYREKLEKLKR----EINELKRELDRLQEELQRLSEELADlnaaIAGIEAKINELE-EEKEDKALEIKKQEWK 456

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|...
gi 401833375   258 LGQEKKEKGMLEQEVKELQLKIESLEKQRKEKeanhQEKCTLLETQNKVLEDE 310
Cdd:TIGR02169  457 LEQLAADLSKYEQELYDLKEEYDRVEKELSKL----QRELAEAEAQARASEER 505
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
33-427 1.56e-04

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 44.26  E-value: 1.56e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375  33 EKMRQDLTQQLEEITSEKSSLQNQVEDLCQELSSAKEQIQRAKQTINEKETKLQESKELLICVGDLKSKLAsAAEAQKEl 112
Cdd:PRK02224 198 EKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIA-ETERERE- 275

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375 113 elKHEAEVTNYKIKLEMLEKEKNAVLDrmaeslEAELERLRTQLLFSHEEELTKLREDLQ---QEHRINIDnlkdnlrmQ 189
Cdd:PRK02224 276 --ELAEEVRDLRERLEELEEERDDLLA------EAGLDDADAEAVEARREELEDRDEELRdrlEECRVAAQ--------A 339

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375 190 HKQQLDGLqndmTKKIEAVKLENDDLIIKQNQLMSEisrlkdLQQAMVNLRSEEMmlKIHELEKEIEILgqeKKEKGMLE 269
Cdd:PRK02224 340 HNEEAESL----REDADDLEERAEELREEAAELESE------LEEAREAVEDRRE--EIEELEEEIEEL---RERFGDAP 404

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375 270 QEVKELQLKIESLEKQRKEKEANHQEKCTLLETQNKVLEdENN*LQDKLK-KYAVMNIEESLIVDSISpnsqdfDLQKRI 348
Cdd:PRK02224 405 VDLGNAEDFLEELREERDELREREAELEATLRTARERVE-EAEALLEAGKcPECGQPVEGSPHVETIE------EDRERV 477

                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 401833375 349 EDLIAENERLVKQDIVLKEEIEkQKKSLSLVEKNFERSyQELREEYVSLLKVKSDLENKKNEQESEYKAKLQALREEIQ 427
Cdd:PRK02224 478 EELEAELEDLEEEVEEVEERLE-RAEDLVEAEDRIERL-EERREDLEELIAERRETIEEKRERAEELRERAAELEAEAE 554
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 26-243 1.73e-04

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 43.60  E-value: 1.73e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375  26 QDANYQREKMRQDLTQQLEEITSEKSSLQNQVEDLCQELSSAKEQIQRAKQTINEKETKLQESKELLICVGDLKSKLASA 105
Cdd:COG4942   19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375 106 AEAQKEL--ELKHEAEVTNYKIKLEMLEKEKNA--------VLDRMAESLEAELERLRTQLlfsheEELTKLREDLQQEH 175
Cdd:COG4942   99 LEAQKEElaELLRALYRLGRQPPLALLLSPEDFldavrrlqYLKYLAPARREQAEELRADL-----AELAALRAELEAER 173

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 401833375 176 rinidNLKDNLRMQHKQQLDGLQNDMTKKIEAVKLENDDLIIKQNQLMSEISRLKDLQQAMVNLRSEE 243
Cdd:COG4942  174 -----AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEA 236
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 18-363 2.27e-04

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 43.51  E-value: 2.27e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375    18 INELNLMLQDANYQREKMR---QDLTQQLEEITSEKSSLQNQVEDLCQELSSAKEQIQRAKQTINEKETKLQESKEllic 94
Cdd:TIGR02168  241 LEELQEELKEAEEELEELTaelQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLER---- 316

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375    95 vgDLKSKLASAAEAQKELELKhEAEVTNYKIKLEMLEKEKnavldrmaESLEAELERLRTQLlfsheEELTKLREDLQQE 174
Cdd:TIGR02168  317 --QLEELEAQLEELESKLDEL-AEELAELEEKLEELKEEL--------ESLEAELEELEAEL-----EELESRLEELEEQ 380

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375   175 hrinIDNLKDNLRmQHKQQLDGLQNdmtkKIEAVKLENDDLIIKQNQLMSEISrlkDLQQAMVNLRSEEMMLKIHELEKE 254
Cdd:TIGR02168  381 ----LETLRSKVA-QLELQIASLNN----EIERLEARLERLEDRRERLQQEIE---ELLKKLEEAELKELQAELEELEEE 448

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375   255 IEILGQEKKEKGMLEQEVKELQLKIESLEKQRKEKEANHQEKCTLLETQNKVLEDENN*LQDKLKKYAVMNIEESLIVDS 334
Cdd:TIGR02168  449 LEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSEL 528

                          330       340       350
                   ....*....|....*....|....*....|....
gi 401833375   335 ISPNSQ-----DFDLQKRIEDLIAENERLVKQDI 363
Cdd:TIGR02168  529 ISVDEGyeaaiEAALGGRLQAVVVENLNAAKKAI 562
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 142-430 3.53e-04

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 43.12  E-value: 3.53e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375   142 AESLEAELERLRTQLlfSHEEELTKLREDLQQEHRINIDNLKDNLRmQHKQQLDGLQNDMTKKIEAVKLENDDLIIKQNQ 221
Cdd:TIGR02168  195 LNELERQLKSLERQA--EKAERYKELKAELRELELALLVLRLEELR-EELEELQEELKEAEEELEELTAELQELEEKLEE 271

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375   222 LMSEISRLK----DLQQAMVNLRSEemmlkIHELEKEIEILGQEKKEkgmLEQEVKELQLKIESLEKQRKEKEANHQEKC 297
Cdd:TIGR02168  272 LRLEVSELEeeieELQKELYALANE-----ISRLEQQKQILRERLAN---LERQLEELEAQLEELESKLDELAEELAELE 343

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375   298 TLLETQNKVLEDENN*LQDKLKKYAVMNIE--------ESLIVDSISPNSQDFDLQKRIEDLIAENERLVKQDIVLKEEI 369
Cdd:TIGR02168  344 EKLEELKEELESLEAELEELEAELEELESRleeleeqlETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEI 423

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 401833375   370 EKQKKSLSLVEKN-FERSYQELREEYVSLLKVKSDLENKKNEQESEYKAKLQALREEIQHLQ 430
Cdd:TIGR02168  424 EELLKKLEEAELKeLQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELA 485
PLN02939 PLN02939
transferase, transferring glycosyl groups
 8-293 1.02e-03

transferase, transferring glycosyl groups


Pssm-ID: 215507 [Multi-domain]  Cd Length: 977  Bit Score: 41.43  E-value: 1.02e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375   8 EDQIHLMNIAINELNLMLQDANYQ---REKMRQDLTQQLEEITSEKSSLQNQVEDLCQELSSAKEQIQRA---------- 74
Cdd:PLN02939 120 KDGEQLSDFQLEDLVGMIQNAEKNillLNQARLQALEDLEKILTEKEALQGKINILEMRLSETDARIKLAaqekihveil 199

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375  75 -KQTINEKETKLQESKELLICVGDLKSKLASAAEAQKELE-----LKHE-AEVTNYKIKLEMLEKEKNAvldrmaesLEA 147
Cdd:PLN02939 200 eEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEENMLLKddiqfLKAElIEVAETEERVFKLEKERSL--------LDA 271

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375 148 ELERLRTQLLFSHEE--ELTKLREDLQQEHRINIDNLKDNLRMQHKQQLDGLQ--NDMTKKIEavKLENDdliIKQNQLM 223
Cdd:PLN02939 272 SLRELESKFIVAQEDvsKLSPLQYDCWWEKVENLQDLLDRATNQVEKAALVLDqnQDLRDKVD--KLEAS---LKEANVS 346

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375 224 SEISRLKDLQQAMVNLRSEEMMLKIHELEKEIEilgqekkekgMLEQEVKELQLKIESLEKQRKEKEANH 293
Cdd:PLN02939 347 KFSSYKVELLQQKLKLLEERLQASDHEIHSYIQ----------LYQESIKEFQDTLSKLKEESKKRSLEH 406
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
31-232 1.59e-03

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 40.79  E-value: 1.59e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375  31 QREKMRQDLTQQLEEITSEKSSLQNQVEDLCQ------ELSSAKEQIQRAKQTINEKETKLQESKELLICVGDLKSKLAS 104
Cdd:PRK02224 472 EDRERVEELEAELEDLEEEVEEVEERLERAEDlveaedRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEA 551

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375 105 AAEAQKELELKHEAEVTNYKIKLEMLEKEKNAV------LDRMAESL------EAELERLRTQLlfSHEEELTKLREDLQ 172
Cdd:PRK02224 552 EAEEKREAAAEAEEEAEEAREEVAELNSKLAELkeriesLERIRTLLaaiadaEDEIERLREKR--EALAELNDERRERL 629

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 401833375 173 QEHRINIDNLKDNLR-------MQHKQQLDGLQNDMTKKIEAVKLENDDLIIKQNQLMSEISRLKDL 232
Cdd:PRK02224 630 AEKRERKRELEAEFDearieeaREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEEL 696
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 162-431 1.77e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 40.81  E-value: 1.77e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375   162 EELTKLREDLQQEhrinIDNLKDNLrmqhkQQLDGLQNDMTKKIEAVKLENDDLIIKQNQLMSEISRLkdlqQAMVNLRS 241
Cdd:TIGR02168  680 EELEEKIEELEEK----IAELEKAL-----AELRKELEELEEELEQLRKELEELSRQISALRKDLARL----EAEVEQLE 746

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375   242 EEMMLKIHELEKEIEILGQEKKEKGMLEQEVKELQLKIESLEKQRKEKEANHQEKCTLLETQNKVLEDENN*LQDKLKKY 321
Cdd:TIGR02168  747 ERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERL 826

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375   322 AVMNIEESLIVDSISPNSQDFdlqKRIEDLIAENERLVKQDIVLKEEIEKQKKSLSLVEKNFERSYQELREEYVSLLKVK 401
Cdd:TIGR02168  827 ESLERRIAATERRLEDLEEQI---EELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEEL 903

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|
gi 401833375   402 SDLENKK----------NEQESEYKAKLQALREEIQHLQG 431
Cdd:TIGR02168  904 RELESKRselrreleelREKLAQLELRLEGLEVRIDNLQE 943
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 228-431 1.84e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 40.81  E-value: 1.84e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375   228 RLKDLQQAMVNLRSEEMMLKIHELEKEIEILGQEKKEkgmLEQEVKELQLKIESLEKQRKEKEANHQEKCTLLETQNKVL 307
Cdd:TIGR02168  214 RYKELKAELRELELALLVLRLEELREELEELQEELKE---AEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKEL 290

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375   308 EDENN*LQDKLKKYAVMNIEESLIVDSISP-NSQDFDLQKRIEDLIAENERLVKQDIVLKEEIEKQKKSLS---LVEKNF 383
Cdd:TIGR02168  291 YALANEISRLEQQKQILRERLANLERQLEElEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEeleAELEEL 370

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*...
gi 401833375   384 ERSYQELREEYVSLlkvkSDLENKKNEQESEYKAKLQALREEIQHLQG 431
Cdd:TIGR02168  371 ESRLEELEEQLETL----RSKVAQLELQIASLNNEIERLEARLERLED 414
PLN03229 PLN03229
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
 53-309 1.85e-03

acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional


Pssm-ID: 178768 [Multi-domain]  Cd Length: 762  Bit Score: 40.61  E-value: 1.85e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375  53 LQNQVEDLCQELSSAKEQIQRAKQTI-NEKETKL-----QESKELLICVGdLKSKLASAAEAQKELELKHEAEVTNYKIK 126
Cdd:PLN03229 434 LEGEVEKLKEQILKAKESSSKPSELAlNEMIEKLkkeidLEYTEAVIAMG-LQERLENLREEFSKANSQDQLMHPVLMEK 512

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375 127 LEMLEKEKNAVLDRMA--ESLEAELERL----RTQLLFSHEEELTKLREDLQQ---------EHRINIDNLKDNLRMQHK 191
Cdd:PLN03229 513 IEKLKDEFNKRLSRAPnyLSLKYKLDMLnefsRAKALSEKKSKAEKLKAEINKkfkevmdrpEIKEKMEALKAEVASSGA 592

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375 192 QQLDGLQNDMTKKIEAVKLEND--------------DLIIKQNQLMSEISRLKDLQQAMVNLRSE-----EMMLKIHELE 252
Cdd:PLN03229 593 SSGDELDDDLKEKVEKMKKEIElelagvlksmglevIGVTKKNKDTAEQTPPPNLQEKIESLNEEinkkiERVIRSSDLK 672

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 401833375 253 KEIEILGQEKKEKGmlEQEVKELQLKIESLEKQRKEKEANHQEKCTLLETQNKVLED 309
Cdd:PLN03229 673 SKIELLKLEVAKAS--KTPDVTEKEKIEALEQQIKQKIAEALNSSELKEKFEELEAE 727
CwlO1 COG3883
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ...
 247-430 2.17e-03

Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];


Pssm-ID: 443091 [Multi-domain]  Cd Length: 379  Bit Score: 40.20  E-value: 2.17e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375 247 KIHELEKEIEILGQEKKEkgmLEQEVKELQLKIESLEKQRKEKEANHQEkctlLETQNKVLEDENN*LQDKLKKYAVMNI 326
Cdd:COG3883   24 ELSELQAELEAAQAELDA---LQAELEELNEEYNELQAELEALQAEIDK----LQAEIAEAEAEIEERREELGERARALY 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375 327 EESLIVDSISP--NSQDF----DLQKRIEDLIAENERLVKQDIVLKEEIEKQKKSLSLVEKNFERSYQELREEYVSLLKV 400
Cdd:COG3883   97 RSGGSVSYLDVllGSESFsdflDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQ 176

                        170       180       190
                 ....*....|....*....|....*....|
gi 401833375 401 KSDLENKKNEQESEYKAKLQALREEIQHLQ 430
Cdd:COG3883  177 QAEQEALLAQLSAEEAAAEAQLAELEAELA 206
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
50-430 2.91e-03

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 40.05  E-value: 2.91e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375  50 KSSLQNQVEDLCQELSSAKEQIQRAKQTINEKETKLQESKELLICVGDLKSKLASAAEAQKELElKHEAEVTNYKIKLEM 129
Cdd:PRK03918 171 IKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELE-ELKEEIEELEKELES 249

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375 130 LEKEKNAV------LDRMAESLEAELERLRTQLLFSHE--------EELTKLREDLQQEHRiNIDNLKDNLRMQHKQQLD 195
Cdd:PRK03918 250 LEGSKRKLeekireLEERIEELKKEIEELEEKVKELKElkekaeeyIKLSEFYEEYLDELR-EIEKRLSRLEEEINGIEE 328

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375 196 GLQ--NDMTKKIEAVKLENDDLIIKQNQLMSEISRLKDLQQAMVNLRSEEMMLKIHELEKEIEILGQEKKEKGMLEQEVK 273
Cdd:PRK03918 329 RIKelEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEIS 408

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375 274 ELQLKIESLEKQRKEKEANHQE------KCTLLetqNKVLEDENN*LQDKLKKYAVMNIEESLIvDSISPNSQDFDLQKR 347
Cdd:PRK03918 409 KITARIGELKKEIKELKKAIEElkkakgKCPVC---GRELTEEHRKELLEEYTAELKRIEKELK-EIEEKERKLRKELRE 484

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375 348 IEDLIAENERLVKQDIVLKEEIEKQKKSLSLVEKNFERSYQELREEYVSLLKVKSDLENKKNEQES--EYKAKLQALREE 425
Cdd:PRK03918 485 LEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKleELKKKLAELEKK 564


                 ....*
gi 401833375 426 IQHLQ 430
Cdd:PRK03918 565 LDELE 569
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 54-291 3.35e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 39.36  E-value: 3.35e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375  54 QNQVEDLCQELSSAKEQIQRAKQTINEKETKLQESKELLicvGDLKSKLASAAEAQKELElkheAEVTNYKIKLEMLEKE 133
Cdd:COG4942   19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQL---AALERRIAALARRIRALE----QELAALEAELAELEKE 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375 134 KNAVLDRMAESLEAELERLRTQLLFSHEEELTKLredlqqehrINIDNLKDNLRMQH-----KQQLDGLQNDMTKKIEAV 208
Cdd:COG4942   92 IAELRAELEAQKEELAELLRALYRLGRQPPLALL---------LSPEDFLDAVRRLQylkylAPARREQAEELRADLAEL 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375 209 KLENDDLIIKQNQLMSEISRLKDLQQAMVNLRSEEMMLkIHELEKEIEILGQEKKEkgmLEQEVKELQLKIESLEKQRKE 288
Cdd:COG4942  163 AALRAELEAERAELEALLAELEEERAALEALKAERQKL-LARLEKELAELAAELAE---LQQEAEELEALIARLEAEAAA 238


                 ...
gi 401833375 289 KEA 291
Cdd:COG4942  239 AAE 241
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 139-426 3.73e-03

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 39.67  E-value: 3.73e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375   139 DRMAESLEAELERLRTQL--LFSHEEELTKLREDLQQE--HRINIDNLKDNLRMQHKQQLDGLQNDMTKKIEAVKLENDD 214
Cdd:TIGR02169  169 DRKKEKALEELEEVEENIerLDLIIDEKRQQLERLRREreKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLAS 248

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375   215 LIIKQNQLMSEISRLkdlqqamvNLRSEEMMLKIHELEKEIEILGQEkkEKGMLEQEVKELQLKIESLEKQRKEKEANHQ 294
Cdd:TIGR02169  249 LEEELEKLTEEISEL--------EKRLEEIEQLLEELNKKIKDLGEE--EQLRVKEKIGELEAEIASLERSIAEKERELE 318

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375   295 EkctlLETQNKVLEDENN*LQDKLKKYAVMNIEESLIVDSISPNSQDF-----DLQKRIEDLIAENERLVKQDIVLKEEI 369
Cdd:TIGR02169  319 D----AEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELkeeleDLRAELEEVDKEFAETRDELKDYREKL 394

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 401833375   370 EKQKKSLSLVEKNFERSYQELREEYVSLLKVKSDLENKKnEQESEYKAKLQALREEI 426
Cdd:TIGR02169  395 EKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIE-AKINELEEEKEDKALEI 450
DUF3584 pfam12128
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
 8-215 4.24e-03

Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.


Pssm-ID: 432349 [Multi-domain]  Cd Length: 1191  Bit Score: 39.44  E-value: 4.24e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375     8 EDQIHLMNIAINELNLMLQDANYQREKMRQDLTQQLEE-----------ITSEKSSLQNQVEDLCQELSSAKEQIQRAKQ 76
Cdd:pfam12128  624 EEQLVQANGELEKASREETFARTALKNARLDLRRLFDEkqsekdkknkaLAERKDSANERLNSLEAQLKQLDKKHQAWLE 703

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375    77 TINE--KETKLQESKELLICVGDLKSKLASAAEAQKELELKHEAEV----TNYKIKLEML--EKEKNAVLDRMAESLEAE 148
Cdd:pfam12128  704 EQKEqkREARTEKQAYWQVVEGALDAQLALLKAAIAARRSGAKAELkaleTWYKRDLASLgvDPDVIAKLKREIRTLERK 783

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 401833375   149 LERLRTQllfshEEELTKLREDLQQEHRINIDNLKDNLRMQHKQQLDgLQNDMTKKIEAVKLENDDL 215
Cdd:pfam12128  784 IERIAVR-----RQEVLRYFDWYQETWLQRRPRLATQLSNIERAISE-LQQQLARLIADTKLRRAKL 844
PRK12704 PRK12704
phosphodiesterase; Provisional
 123-292 4.36e-03

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 39.38  E-value: 4.36e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375 123 YKIKLEMLEKEKNAVLDRMAESLEAELERLRTQLLFSHEEELTKLREDLQQEHRINIDNLKDNLR--MQHKQQLDglqnd 200
Cdd:PRK12704  25 RKKIAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKrlLQKEENLD----- 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375 201 mtKKIEAVKLENDDLIIKQNQLMSEISRLKDLQQAMVNLRSEEM--MLKIHELEKE--IEILGQEKKEKgmLEQEVKELQ 276
Cdd:PRK12704 100 --RKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLqeLERISGLTAEeaKEILLEKVEEE--ARHEAAVLI 175

                        170
                 ....*....|....*.
gi 401833375 277 LKIESLEKQRKEKEAN 292
Cdd:PRK12704 176 KEIEEEAKEEADKKAK 191
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
 31-296 6.58e-03

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 38.95  E-value: 6.58e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375   31 QREKMRQDLTQQLEEITSEKSSLQNQVEDLCQELSSAK--EQIQRAKQTINEKETKLQESKELLICVGDLKSKLASAAEA 108
Cdd:pfam17380 279 QHQKAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRklEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRQEER 358

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375  109 QKELELKHEAEVTnykiklemLEKEKNAVLDRMAESLEAELERLRTQLLFSHEEE-LTKLREDLQQEHRINIDNLKDNLR 187
Cdd:pfam17380 359 KRELERIRQEEIA--------MEISRMRELERLQMERQQKNERVRQELEAARKVKiLEEERQRKIQQQKVEMEQIRAEQE 430

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375  188 MQHKQQLDGLQNDMTKKIEAVKLENDDL-----IIKQNQLMSEISRLKDLQQAMVNLRSEEMMLKI--HELEKEIEILGQ 260
Cdd:pfam17380 431 EARQREVRRLEEERAREMERVRLEEQERqqqveRLRQQEEERKRKKLELEKEKRDRKRAEEQRRKIleKELEERKQAMIE 510

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 401833375  261 EKKEKGMLEQEVKELQLKIESLEKQRKEKEANHQEK 296
Cdd:pfam17380 511 EERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQ 546
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 31-406 9.68e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 38.38  E-value: 9.68e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375  31 QREKMRQDLTQQLEEITSEKSSLQNQVEDLCQELSSAKEQIQRAKQTINEKETKLQESKELLIcvgDLKSKLASAAEAQK 110
Cdd:COG1196  404 ELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLA---ELLEEAALLEAALA 480

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375 111 ELELKHEAEVTNYKIKLEMLEKEKNAVLDRMAESLEAELERLRTQL--LFSHEEELTKLREDLQQEHRIN---------- 178
Cdd:COG1196  481 ELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVavLIGVEAAYEAALEAALAAALQNivveddevaa 560

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375 179 --IDNLKDN---------LRMQHKQQLDGLQNDMTKKIEAVKLENDDLIIKQNQLMSEISRLKDLQQAMVNLRSEEMMLK 247
Cdd:COG1196  561 aaIEYLKAAkagratflpLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAV 640

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375 248 IHELEKEIEILGQEKKEKGMLEQEVKELQLKIESLEKQRKEKEANHQEKCTLLETQNKVLEDENN*LQDKLKKYAVMNIE 327
Cdd:COG1196  641 TLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEE 720

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 401833375 328 ESLIVDSISPNSQDFDLQKRIEDLIAENERLVKQDIVLKEEIEKQKKSLSLVEKNFER----------SYQELREEYVSL 397
Cdd:COG1196  721 LEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAlgpvnllaieEYEELEERYDFL 800


                 ....*....
gi 401833375 398 LKVKSDLEN 406
Cdd:COG1196  801 SEQREDLEE 809
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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