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Conserved domains on  [gi|408902890|gb|AFU96084|]
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PsbJ, partial (chloroplast) [Linum usitatissimum]

Protein Classification

photosystem II reaction center protein J( domain architecture ID 10000095)

photosystem II reaction center protein J is one of the components of the core complex of photosystem II (PSII), which is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
psbJ CHL00108
photosystem II protein J
 1-40 1.49e-14

photosystem II protein J


:

Pssm-ID: 177036  Cd Length: 40  Bit Score: 59.22  E-value: 1.49e-14
                        10        20        30        40
                ....*....|....*....|....*....|....*....|
gi 408902890  1 MADTTGRIPLWIIGTVTGILVIGLIGIFFYGSYSGLGSSL 40
Cdd:CHL00108  1 MADTTGRIPLWLIGTVAGIAVIGLLGIFFYGSYSGLGSSL 40
 
Name Accession Description Interval E-value
psbJ CHL00108
photosystem II protein J
 1-40 1.49e-14

photosystem II protein J


Pssm-ID: 177036  Cd Length: 40  Bit Score: 59.22  E-value: 1.49e-14
                        10        20        30        40
                ....*....|....*....|....*....|....*....|
gi 408902890  1 MADTTGRIPLWIIGTVTGILVIGLIGIFFYGSYSGLGSSL 40
Cdd:CHL00108  1 MADTTGRIPLWLIGTVAGIAVIGLLGIFFYGSYSGLGSSL 40
PsbJ pfam01788
PsbJ; This family consists of the photosystem II reaction centre protein PsbJ from plants and ...
 2-40 5.63e-11

PsbJ; This family consists of the photosystem II reaction centre protein PsbJ from plants and Cyanobacteria. In Synechocystis sp. PCC 6803 PsbJ regulates the number of photosystem II centres in thylakoid membranes, it is a predicted 4kDa protein with one membrane spanning domain.


Pssm-ID: 460330  Cd Length: 39  Bit Score: 50.07  E-value: 5.63e-11
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 408902890   2 ADTTGRIPLWIIGTVTGILVIGLIGIFFYGSYSGLGSSL 40
Cdd:pfam01788  1 MSGTGRIPLWLVATVAGLGVITVVGIFFYGSYAGLGSSL 39
PsbJ COG5724
Photosystem II reaction center protein J, PsbJ [Energy production and conversion]; Photosystem ...
 4-39 1.82e-07

Photosystem II reaction center protein J, PsbJ [Energy production and conversion]; Photosystem II reaction center protein J, PsbJ is part of the Pathway/BioSystem: Photosystem II


Pssm-ID: 444434  Cd Length: 38  Bit Score: 41.23  E-value: 1.82e-07
                        10        20        30
                ....*....|....*....|....*....|....*.
gi 408902890  4 TTGRIPLWIIGTVTGILVIGLIGIFFYGSYSGLGSS 39
Cdd:COG5724   3 GDGRIPLWLVATVAGTGVIVVVGLFFYGAYAGLGSS 38
 
Name Accession Description Interval E-value
psbJ CHL00108
photosystem II protein J
 1-40 1.49e-14

photosystem II protein J


Pssm-ID: 177036  Cd Length: 40  Bit Score: 59.22  E-value: 1.49e-14
                        10        20        30        40
                ....*....|....*....|....*....|....*....|
gi 408902890  1 MADTTGRIPLWIIGTVTGILVIGLIGIFFYGSYSGLGSSL 40
Cdd:CHL00108  1 MADTTGRIPLWLIGTVAGIAVIGLLGIFFYGSYSGLGSSL 40
PsbJ pfam01788
PsbJ; This family consists of the photosystem II reaction centre protein PsbJ from plants and ...
 2-40 5.63e-11

PsbJ; This family consists of the photosystem II reaction centre protein PsbJ from plants and Cyanobacteria. In Synechocystis sp. PCC 6803 PsbJ regulates the number of photosystem II centres in thylakoid membranes, it is a predicted 4kDa protein with one membrane spanning domain.


Pssm-ID: 460330  Cd Length: 39  Bit Score: 50.07  E-value: 5.63e-11
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 408902890   2 ADTTGRIPLWIIGTVTGILVIGLIGIFFYGSYSGLGSSL 40
Cdd:pfam01788  1 MSGTGRIPLWLVATVAGLGVITVVGIFFYGSYAGLGSSL 39
PRK02565 PRK02565
photosystem II reaction center protein J; Provisional
 4-40 1.32e-08

photosystem II reaction center protein J; Provisional


Pssm-ID: 179446  Cd Length: 39  Bit Score: 44.26  E-value: 1.32e-08
                        10        20        30
                ....*....|....*....|....*....|....*..
gi 408902890  4 TTGRIPLWIIGTVTGILVIGLIGIFFYGSYSGLGSSL 40
Cdd:PRK02565  3 TEGRIPLWLVATVAGMGVIFVVGLFFYGSYAGLGSSL 39
PsbJ COG5724
Photosystem II reaction center protein J, PsbJ [Energy production and conversion]; Photosystem ...
 4-39 1.82e-07

Photosystem II reaction center protein J, PsbJ [Energy production and conversion]; Photosystem II reaction center protein J, PsbJ is part of the Pathway/BioSystem: Photosystem II


Pssm-ID: 444434  Cd Length: 38  Bit Score: 41.23  E-value: 1.82e-07
                        10        20        30
                ....*....|....*....|....*....|....*.
gi 408902890  4 TTGRIPLWIIGTVTGILVIGLIGIFFYGSYSGLGSS 39
Cdd:COG5724   3 GDGRIPLWLVATVAGTGVIVVVGLFFYGAYAGLGSS 38
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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