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Conserved domains on  [gi|409688999|gb|AFV35889|]
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cytochrome b, partial (mitochondrion) [Nippolachnus piri]

Protein Classification

cytochrome b/b6( domain architecture ID 11475928)

cytochrome b/b6 (PetB) is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme; cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes; in plants and cyanobacteria, cytochrome b6 is analogous to cytochrome b and contains two chains: helices A-D (encoded by petB) and helices E-H (encoded by petD)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 2-243 3.32e-138

cytochrome b; Provisional


:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 391.84  E-value: 3.32e-138
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999   2 QILTGLFLAFHYKTDINLAFQSIINMNRNINFGWLMRSFHANGASMFFIMMYLHISRGIYMNSFNFKMTWMIGVILLLLT 81
Cdd:MTH00156  34 QIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLV 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999  82 MMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIHFILPFIILMFIFIHLMMLHLT 161
Cdd:MTH00156 114 MATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQT 193

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999 162 GSNNPLGINSNFDKIIFSPYFIIKDLMGLIMFMWMFILLTLMFPYLLNDHNNFIMANPMITPNHIQPEWYFLFSYTILRA 241
Cdd:MTH00156 194 GSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRS 273


                 ..
gi 409688999 242 IP 243
Cdd:MTH00156 274 IP 275
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 2-243 3.32e-138

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 391.84  E-value: 3.32e-138
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999   2 QILTGLFLAFHYKTDINLAFQSIINMNRNINFGWLMRSFHANGASMFFIMMYLHISRGIYMNSFNFKMTWMIGVILLLLT 81
Cdd:MTH00156  34 QIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLV 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999  82 MMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIHFILPFIILMFIFIHLMMLHLT 161
Cdd:MTH00156 114 MATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQT 193

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999 162 GSNNPLGINSNFDKIIFSPYFIIKDLMGLIMFMWMFILLTLMFPYLLNDHNNFIMANPMITPNHIQPEWYFLFSYTILRA 241
Cdd:MTH00156 194 GSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRS 273


                 ..
gi 409688999 242 IP 243
Cdd:MTH00156 274 IP 275
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-243 1.19e-89

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 269.74  E-value: 1.19e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999   1 NQILTGLFLAFHYKTDINLAFQSIINMNRNINFGWLMRSFHANGASMFFIMMYLHISRGIYMNSFNF--KMTWMIGVILL 78
Cdd:COG1290   52 IQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYKKprELNWIIGVLLL 131

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999  79 LLTMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIH-FILPFIILMFIFIHLMM 157
Cdd:COG1290  132 LLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWL 211

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999 158 LHLTGSNNPLGI----NSNFDKIIFSPYFIIKDLMGLIMFMWMFILLTLMFPylLNDHNNFIMANPMITPNHIQPEWYFL 233
Cdd:COG1290  212 LHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFP--INPPPNYGPANPLATPAHIQPDWYFL 289

                        250
                 ....*....|
gi 409688999 234 FSYTILRAIP 243
Cdd:COG1290  290 PFYGILRAIP 299
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 2-164 1.03e-63

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 197.21  E-value: 1.03e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999   2 QILTGLFLAFHYKTDINLAFQSIINMNRNINFGWLMRSFHANGASMFFIMMYLHISRGIYMNSFN--FKMTWMIGVILLL 79
Cdd:cd00284   36 QILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLL 115

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999  80 LTMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIHFILPFIILMFIFIHLMMLH 159
Cdd:cd00284  116 LTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLH 195


                 ....*
gi 409688999 160 LTGSN 164
Cdd:cd00284  196 EQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
2-162 2.88e-59

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 185.66  E-value: 2.88e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999    2 QILTGLFLAFHYKTDINLAFQSIINMNRNINFGWLMRSFHANGASMFFIMMYLHISRGIYMNSFN--FKMTWMIGVILLL 79
Cdd:pfam00033  27 QILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGGFSypRELTWVIGVILLV 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999   80 LTMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIHFILPFIILMFIFIHLMMLH 159
Cdd:pfam00033 107 LTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLH 186


                  ...
gi 409688999  160 LTG 162
Cdd:pfam00033 187 ETG 189
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 2-243 3.32e-138

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 391.84  E-value: 3.32e-138
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999   2 QILTGLFLAFHYKTDINLAFQSIINMNRNINFGWLMRSFHANGASMFFIMMYLHISRGIYMNSFNFKMTWMIGVILLLLT 81
Cdd:MTH00156  34 QIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLV 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999  82 MMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIHFILPFIILMFIFIHLMMLHLT 161
Cdd:MTH00156 114 MATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQT 193

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999 162 GSNNPLGINSNFDKIIFSPYFIIKDLMGLIMFMWMFILLTLMFPYLLNDHNNFIMANPMITPNHIQPEWYFLFSYTILRA 241
Cdd:MTH00156 194 GSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRS 273


                 ..
gi 409688999 242 IP 243
Cdd:MTH00156 274 IP 275
CYTB MTH00119
cytochrome b; Provisional
 2-243 3.78e-130

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 372.31  E-value: 3.78e-130
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999   2 QILTGLFLAFHYKTDINLAFQSIINMNRNINFGWLMRSFHANGASMFFIMMYLHISRGIYMNSFNFKMTWMIGVILLLLT 81
Cdd:MTH00119  45 QILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLL 124

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999  82 MMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIHFILPFIILMFIFIHLMMLHLT 161
Cdd:MTH00119 125 MATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHET 204

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999 162 GSNNPLGINSNFDKIIFSPYFIIKDLMGLIMFMWMFILLTLMFPYLLNDHNNFIMANPMITPNHIQPEWYFLFSYTILRA 241
Cdd:MTH00119 205 GSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRS 284


                 ..
gi 409688999 242 IP 243
Cdd:MTH00119 285 IP 286
CYTB MTH00131
cytochrome b; Provisional
 2-243 4.33e-125

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 359.74  E-value: 4.33e-125
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999   2 QILTGLFLAFHYKTDINLAFQSIINMNRNINFGWLMRSFHANGASMFFIMMYLHISRGIYMNSFNFKMTWMIGVILLLLT 81
Cdd:MTH00131  44 QILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLV 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999  82 MMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIHFILPFIILMFIFIHLMMLHLT 161
Cdd:MTH00131 124 MMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHET 203

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999 162 GSNNPLGINSNFDKIIFSPYFIIKDLMGLIMFMWMFILLTLMFPYLLNDHNNFIMANPMITPNHIQPEWYFLFSYTILRA 241
Cdd:MTH00131 204 GSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRS 283


                 ..
gi 409688999 242 IP 243
Cdd:MTH00131 284 IP 285
CYTB MTH00145
cytochrome b; Provisional
 2-243 7.35e-125

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 358.83  E-value: 7.35e-125
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999   2 QILTGLFLAFHYKTDINLAFQSIINMNRNINFGWLMRSFHANGASMFFIMMYLHISRGIYMNSFNFKMTWMIGVILLLLT 81
Cdd:MTH00145  45 QILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLS 124

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999  82 MMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIHFILPFIILMFIFIHLMMLHLT 161
Cdd:MTH00145 125 MGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHET 204

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999 162 GSNNPLGINSNFDKIIFSPYFIIKDLMGLIMFMWMFILLTLMFPYLLNDHNNFIMANPMITPNHIQPEWYFLFSYTILRA 241
Cdd:MTH00145 205 GSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRS 284


                 ..
gi 409688999 242 IP 243
Cdd:MTH00145 285 IP 286
CYTB MTH00191
cytochrome b; Provisional
 2-243 1.42e-121

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 349.98  E-value: 1.42e-121
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999   2 QILTGLFLAFHYKTDINLAFQSIINMNRNINFGWLMRSFHANGASMFFIMMYLHISRGIYMNSFNFKMTWMIGVILLLLT 81
Cdd:MTH00191  41 QILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILS 120

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999  82 MMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIHFILPFIILMFIFIHLMMLHLT 161
Cdd:MTH00191 121 MATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHET 200

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999 162 GSNNPLGINSNFDKIIFSPYFIIKDLMGLIMFMWMFILLTLMFPYLLNDHNNFIMANPMITPNHIQPEWYFLFSYTILRA 241
Cdd:MTH00191 201 GSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRS 280


                 ..
gi 409688999 242 IP 243
Cdd:MTH00191 281 IP 282
CYTB MTH00100
cytochrome b; Provisional
 2-243 6.74e-120

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 346.63  E-value: 6.74e-120
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999   2 QILTGLFLAFHYKTDINLAFQSIINMNRNINFGWLMRSFHANGASMFFIMMYLHISRGIYMNSFNFKMTWMIGVILLLLT 81
Cdd:MTH00100  44 QILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTV 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999  82 MMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIHFILPFIILMFIFIHLMMLHLT 161
Cdd:MTH00100 124 MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHET 203

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999 162 GSNNPLGINSNFDKIIFSPYFIIKDLMGLIMFMWMFILLTLMFPYLLNDHNNFIMANPMITPNHIQPEWYFLFSYTILRA 241
Cdd:MTH00100 204 GSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRS 283


                 ..
gi 409688999 242 IP 243
Cdd:MTH00100 284 IP 285
CYTB MTH00074
cytochrome b; Provisional
 2-243 3.56e-118

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 342.05  E-value: 3.56e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999   2 QILTGLFLAFHYKTDINLAFQSIINMNRNINFGWLMRSFHANGASMFFIMMYLHISRGIYMNSFNFKMTWMIGVILLLLT 81
Cdd:MTH00074  45 QIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLV 124

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999  82 MMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIHFILPFIILMFIFIHLMMLHLT 161
Cdd:MTH00074 125 MATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHET 204

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999 162 GSNNPLGINSNFDKIIFSPYFIIKDLMGLIMFMWMFILLTLMFPYLLNDHNNFIMANPMITPNHIQPEWYFLFSYTILRA 241
Cdd:MTH00074 205 GSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRS 284


                 ..
gi 409688999 242 IP 243
Cdd:MTH00074 285 IP 286
CYTB MTH00034
cytochrome b; Validated
 2-243 1.49e-115

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 335.52  E-value: 1.49e-115
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999   2 QILTGLFLAFHYKTDINLAFQSIINMNRNINFGWLMRSFHANGASMFFIMMYLHISRGIYMNSFNFKMTWMIGVILLLLT 81
Cdd:MTH00034  44 QIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLT 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999  82 MMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIHFILPFIILMFIFIHLMMLHLT 161
Cdd:MTH00034 124 MLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQT 203

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999 162 GSNNPLGINSNFDKIIFSPYFIIKDLMGLIMFMWMFILLTLMFPYLLNDHNNFIMANPMITPNHIQPEWYFLFSYTILRA 241
Cdd:MTH00034 204 GSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRS 283


                 ..
gi 409688999 242 IP 243
Cdd:MTH00034 284 IP 285
CYTB MTH00016
cytochrome b; Validated
 2-243 3.09e-114

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 332.03  E-value: 3.09e-114
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999   2 QILTGLFLAFHYKTDINLAFQSIINMNRNINFGWLMRSFHANGASMFFIMMYLHISRGIYMNSFNFKMTWMIGVILLLLT 81
Cdd:MTH00016  45 QILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLT 124

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999  82 MMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIHFILPFIILMFIFIHLMMLHLT 161
Cdd:MTH00016 125 MATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQT 204

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999 162 GSNNPLGINSNFDKIIFSPYFIIKDLMGLIMFMWMFILLTLMFPYLLNDHNNFIMANPMITPNHIQPEWYFLFSYTILRA 241
Cdd:MTH00016 205 GSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRS 284


                 ..
gi 409688999 242 IP 243
Cdd:MTH00016 285 IP 286
CYTB MTH00022
cytochrome b; Validated
 2-243 1.02e-100

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 297.77  E-value: 1.02e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999   2 QILTGLFLAFHYKTDINLAFQSIINMNRNINFGWLMRSFHANGASMFFIMMYLHISRGIYMNSFNFKMTWMIGVILLLLT 81
Cdd:MTH00022  43 QIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLT 122

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999  82 MMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIHFILPFIILMFIFIHLMMLHLT 161
Cdd:MTH00022 123 MATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVD 202

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999 162 GSNNPLGINSNFDKIIFSPYFIIKDLMGLIMFMWMFILLTLMFPYLLNDHNNFIMANPMITPNHIQPEWYFLFSYTILRA 241
Cdd:MTH00022 203 GSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRS 282


                 ..
gi 409688999 242 IP 243
Cdd:MTH00022 283 IP 284
CYTB MTH00053
cytochrome b; Provisional
 2-243 4.95e-100

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 295.85  E-value: 4.95e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999   2 QILTGLFLAFHYKTDINLAFQSIINMNRNINFGWLMRSFHANGASMFFIMMYLHISRGIYMNSFNFKMTWMIGVILLLLT 81
Cdd:MTH00053  45 QIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLM 124

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999  82 MMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIHFILPFIILMFIFIHLMMLHLT 161
Cdd:MTH00053 125 ILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHED 204

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999 162 GSNNPLGINSNFDKIIFSPYFIIKDLMGLIMFMWMFILLTLMFPYLLNDHNNFIMANPMITPNHIQPEWYFLFSYTILRA 241
Cdd:MTH00053 205 GSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRS 284


                 ..
gi 409688999 242 IP 243
Cdd:MTH00053 285 IP 286
CYTB MTH00224
cytochrome b; Provisional
 2-243 1.15e-99

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 294.91  E-value: 1.15e-99
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999   2 QILTGLFLAFHYKTDINLAFQSIINMNRNINFGWLMRSFHANGASMFFIMMYLHISRGIYMNSFNFKMTWMIGVILLLLT 81
Cdd:MTH00224  45 QVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILT 124

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999  82 MMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIHFILPFIILMFIFIHLMMLHLT 161
Cdd:MTH00224 125 MATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQT 204

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999 162 GSNNPLGINSNFDKIIFSPYFIIKDLMGLIMFMWMFILLTLMFPYLLNDHNNFIMANPMITPNHIQPEWYFLFSYTILRA 241
Cdd:MTH00224 205 GSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRS 284


                 ..
gi 409688999 242 IP 243
Cdd:MTH00224 285 IP 286
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-243 1.19e-89

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 269.74  E-value: 1.19e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999   1 NQILTGLFLAFHYKTDINLAFQSIINMNRNINFGWLMRSFHANGASMFFIMMYLHISRGIYMNSFNF--KMTWMIGVILL 78
Cdd:COG1290   52 IQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYKKprELNWIIGVLLL 131

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999  79 LLTMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIH-FILPFIILMFIFIHLMM 157
Cdd:COG1290  132 LLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWL 211

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999 158 LHLTGSNNPLGI----NSNFDKIIFSPYFIIKDLMGLIMFMWMFILLTLMFPylLNDHNNFIMANPMITPNHIQPEWYFL 233
Cdd:COG1290  212 LHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFP--INPPPNYGPANPLATPAHIQPDWYFL 289

                        250
                 ....*....|
gi 409688999 234 FSYTILRAIP 243
Cdd:COG1290  290 PFYGILRAIP 299
CYTB MTH00086
cytochrome b; Provisional
 2-243 6.26e-87

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 261.80  E-value: 6.26e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999   2 QILTGLFLAFHYKTDINLAFQSIINMNRNINFGWLMRSFHANGASMFFIMMYLHISRGIYMNSFNFKMTWMIGVILLLLT 81
Cdd:MTH00086  33 QILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISGLTIYLLV 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999  82 MMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIHFILPFIILMFIFIHLMMLHLT 161
Cdd:MTH00086 113 MMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHST 192

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999 162 GSNNPLGINSNFDKIIFSPYFIIKDLMGLIMFMwMFILLTLMFPYLLNDHNNFIMANPMITPNHIQPEWYFLFSYTILRA 241
Cdd:MTH00086 193 GSTSSLYCHGDYDKICFGPEYWNKDAYNIIFWL-VFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRA 271


                 ..
gi 409688999 242 IP 243
Cdd:MTH00086 272 IP 273
CYTB MTH00033
cytochrome b; Provisional
 2-243 2.63e-82

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 251.01  E-value: 2.63e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999   2 QILTGLFLAFHYKTDINLAFQSIINMNRNINFGWLMRSFHANGASMFFIMMYLHISRGIYMNSFNFKMTWMIGVILLLLT 81
Cdd:MTH00033  41 QILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIM 120

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999  82 MMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIHFILPFIILMFIFIHLMMLHLT 161
Cdd:MTH00033 121 MLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEK 200

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999 162 GSNNPLGINSNFDKIIFSPYFIIKDLMGLIMFMWMFILLTL--MFPYLLNDHNNFIMANPMITPNHIQPEWYFLFSYTIL 239
Cdd:MTH00033 201 GSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIepRIETLLQDPENFIQANPLVTPVHIQPEWYFLFAYAIL 280


                 ....
gi 409688999 240 RAIP 243
Cdd:MTH00033 281 RSIP 284
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 2-164 1.03e-63

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 197.21  E-value: 1.03e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999   2 QILTGLFLAFHYKTDINLAFQSIINMNRNINFGWLMRSFHANGASMFFIMMYLHISRGIYMNSFN--FKMTWMIGVILLL 79
Cdd:cd00284   36 QILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLL 115

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999  80 LTMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIHFILPFIILMFIFIHLMMLH 159
Cdd:cd00284  116 LTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLH 195


                 ....*
gi 409688999 160 LTGSN 164
Cdd:cd00284  196 EQGSS 200
CYTB MTH00046
cytochrome b; Validated
 2-242 1.55e-63

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 201.75  E-value: 1.55e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999   2 QILTGLFLAFHYKTDINLAFQSIINMNRNINFGWLMRSFHANGASMFFIMMYLHISRGIYMNSFNFKMTWMIGVILLLLT 81
Cdd:MTH00046  35 QVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVGFILYLLV 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999  82 MMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIHFILPFIILMFIFIHLMMLHLT 161
Cdd:MTH00046 115 MVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKS 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999 162 GSNNPLGINSNF-DKIIFSPYFIIKDLMGLIMFMWMFILLTLMFPYLLNDHNNFIMANPMITPNHIQPEWYFLFSYTILR 240
Cdd:MTH00046 195 GSSNPLFSSNGYsDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLR 274


                 ..
gi 409688999 241 AI 242
Cdd:MTH00046 275 SI 276
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
2-162 2.88e-59

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 185.66  E-value: 2.88e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999    2 QILTGLFLAFHYKTDINLAFQSIINMNRNINFGWLMRSFHANGASMFFIMMYLHISRGIYMNSFN--FKMTWMIGVILLL 79
Cdd:pfam00033  27 QILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGGFSypRELTWVIGVILLV 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999   80 LTMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIHFILPFIILMFIFIHLMMLH 159
Cdd:pfam00033 107 LTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLH 186


                  ...
gi 409688999  160 LTG 162
Cdd:pfam00033 187 ETG 189
PRK03735 PRK03735
cytochrome b6; Provisional
 2-167 4.30e-39

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 134.84  E-value: 4.30e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999   2 QILTGLFLAFHYKTDINLAFQSIINMNRNINFGWLMRSFHANGASMFFIMMYLHISRGIYMNSFN--FKMTWMIGVILLL 79
Cdd:PRK03735  55 QILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKkpRELNWVVGVLIFF 134

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999  80 LTMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIH-FILPFIILMFIFIHLMML 158
Cdd:PRK03735 135 VTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMI 214


                 ....*....
gi 409688999 159 HLTGSNNPL 167
Cdd:PRK03735 215 RKQGISGPL 223
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
46-208 4.47e-38

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 130.82  E-value: 4.47e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999   46 SMFFIMMYLHISRGIYMNSFNF--KMTWMIGVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIW 123
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKprELNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999  124 GGFSINNATLTRFFSIHF-ILPFIILMFIFIHLMMLHLTGSNNPLGINSNFDKIIFSPYFIIKDLMGLIMFMWMFILLTL 202
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*.
gi 409688999  203 MFPYLL 208
Cdd:pfam13631 161 INPIWL 166
petB CHL00070
cytochrome b6
 2-167 9.77e-36

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 125.99  E-value: 9.77e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999   2 QILTGLFLAFHYKTDINLAFQSIINMNRNINFGWLMRSFHANGASMFFIMMYLHISRgIYMNSfNFK----MTWMIGVIL 77
Cdd:CHL00070  47 QVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFR-VYLTG-GFKkpreLTWVTGVVL 124

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 409688999  78 LLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIH-FILPFIILMFIFIHLM 156
Cdd:CHL00070 125 AVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFL 204

                        170
                 ....*....|.
gi 409688999 157 MLHLTGSNNPL 167
Cdd:CHL00070 205 MIRKQGISGPL 215
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 165-243 2.97e-18

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 78.46  E-value: 2.97e-18
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 409688999 165 NPLGINSNFDKIIFSPYFIIKDLMGLIMFMWMFILLTLMFPYLLNDHNNFIMANPMITPNHIQPEWYFLFSYTILRAIP 243
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIP 79
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
216-243 5.37e-10

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 54.79  E-value: 5.37e-10
                          10        20
                  ....*....|....*....|....*...
gi 409688999  216 MANPMITPNHIQPEWYFLFSYTILRAIP 243
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIP 28
petD CHL00058
cytochrome b6/f complex subunit IV
 217-243 6.21e-03

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 36.13  E-value: 6.21e-03
                         10        20
                 ....*....|....*....|....*..
gi 409688999 217 ANPMITPNHIQPEWYFLFSYTILRAIP 243
Cdd:CHL00058  66 ADPFATPLEILPEWYFFPVFQILRTVP 92
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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