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Conserved domains on  [gi|410025560|gb|AFV52079|]
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cytochrome b (mitochondrion) [Schiffornis virescens]

Protein Classification

cytochrome b( domain architecture ID 11475906)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-335 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 657.36  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560   1 MITGLLLAMHYTSDITLAFTSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLYKETWNTGVILLLTLM 80
Cdd:MTH00119  46 ILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLM 125

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560  81 ATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFIIAGLTFIHLTFLHETG 160
Cdd:MTH00119 126 ATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETG 205

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560 161 SNNPLGIPSNCDKIPFHPYFSMKDVLGIIILLLPLMSLALFAPNFLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSI 240
Cdd:MTH00119 206 SNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSI 285

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560 241 PNKLGGVLALAASVLILFLAPFLHMSKQRAMTFRPLSQSLFWVLVTNLLVLTWIGSQPVEHPFIIIGQLASLTYFMILLI 320
Cdd:MTH00119 286 PNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLI 365

                        330
                 ....*....|....*
gi 410025560 321 LFPIIASLENKMLNL 335
Cdd:MTH00119 366 LFPLLGALENKMLNY 380
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-335 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 657.36  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560   1 MITGLLLAMHYTSDITLAFTSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLYKETWNTGVILLLTLM 80
Cdd:MTH00119  46 ILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLM 125

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560  81 ATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFIIAGLTFIHLTFLHETG 160
Cdd:MTH00119 126 ATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETG 205

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560 161 SNNPLGIPSNCDKIPFHPYFSMKDVLGIIILLLPLMSLALFAPNFLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSI 240
Cdd:MTH00119 206 SNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSI 285

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560 241 PNKLGGVLALAASVLILFLAPFLHMSKQRAMTFRPLSQSLFWVLVTNLLVLTWIGSQPVEHPFIIIGQLASLTYFMILLI 320
Cdd:MTH00119 286 PNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLI 365

                        330
                 ....*....|....*
gi 410025560 321 LFPIIASLENKMLNL 335
Cdd:MTH00119 366 LFPLLGALENKMLNY 380
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
2-329 6.21e-119

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 348.32  E-value: 6.21e-119
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560   2 ITGLLLAMHYTSDITLAFTSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGFYYGSYlyKE----TWNTGVILLL 77
Cdd:COG1290   55 LTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--KKprelNWIIGVLLLL 132

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560  78 TLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFIIAGLTFIHLTFL 156
Cdd:COG1290  133 LTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLL 212

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560 157 HETGSNNPLGI----PSNCDKIPFHPYFSMKDVLGIIILLLPLMSLALFAPNflGDPENFTPANPLVTPPHIKPEWYFLF 232
Cdd:COG1290  213 HRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLP 290

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560 233 AYAILRSIP--NKLGGVLALAASVLILFLAPFLHMSKQRAMTFRPLSQSLFWVLVTNLLVLTWIGSQPVehPFIIIGQLA 310
Cdd:COG1290  291 FYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP--IATLLGSIN 368

                        330
                 ....*....|....*....
gi 410025560 311 SLTYFMILLILFPIIASLE 329
Cdd:COG1290  369 TVTYFAFFLIVLPILAFIE 387
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 2-162 3.71e-78

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 237.65  E-value: 3.71e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560   2 ITGLLLAMHYTSDITLAFTSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGFYYGSY--LYKETWNTGVILLLTL 79
Cdd:cd00284   38 LTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLT 117

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560  80 MATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFIIAGLTFIHLTFLHET 159
Cdd:cd00284  118 MATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQ 197


                 ...
gi 410025560 160 GSN 162
Cdd:cd00284  198 GSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-160 1.00e-67

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 210.32  E-value: 1.00e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560    1 MITGLLLAMHYTSDITLAFTSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGFYYG--SYLYKETWNTGVILLLT 78
Cdd:pfam00033  28 ILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVILLVL 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560   79 LMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFIIAGLTFIHLTFLHE 158
Cdd:pfam00033 108 TMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHE 187


                  ..
gi 410025560  159 TG 160
Cdd:pfam00033 188 TG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 214-295 2.52e-10

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 58.27  E-value: 2.52e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560  214 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLAPFLHMSKQRAMTF-RPLSQSLFwvlVTNLLVLT 292
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFrRPVATTVF---LFGTVVAL 141


                  ...
gi 410025560  293 WIG 295
Cdd:TIGR01156 142 WLG 144
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-335 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 657.36  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560   1 MITGLLLAMHYTSDITLAFTSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLYKETWNTGVILLLTLM 80
Cdd:MTH00119  46 ILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLM 125

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560  81 ATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFIIAGLTFIHLTFLHETG 160
Cdd:MTH00119 126 ATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETG 205

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560 161 SNNPLGIPSNCDKIPFHPYFSMKDVLGIIILLLPLMSLALFAPNFLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSI 240
Cdd:MTH00119 206 SNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSI 285

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560 241 PNKLGGVLALAASVLILFLAPFLHMSKQRAMTFRPLSQSLFWVLVTNLLVLTWIGSQPVEHPFIIIGQLASLTYFMILLI 320
Cdd:MTH00119 286 PNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLI 365

                        330
                 ....*....|....*
gi 410025560 321 LFPIIASLENKMLNL 335
Cdd:MTH00119 366 LFPLLGALENKMLNY 380
CYTB MTH00131
cytochrome b; Provisional
 1-334 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 599.72  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560   1 MITGLLLAMHYTSDITLAFTSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLYKETWNTGVILLLTLM 80
Cdd:MTH00131  45 ILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVM 124

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560  81 ATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFIIAGLTFIHLTFLHETG 160
Cdd:MTH00131 125 MTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETG 204

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560 161 SNNPLGIPSNCDKIPFHPYFSMKDVLGIIILLLPLMSLALFAPNFLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSI 240
Cdd:MTH00131 205 SNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSI 284

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560 241 PNKLGGVLALAASVLILFLAPFLHMSKQRAMTFRPLSQSLFWVLVTNLLVLTWIGSQPVEHPFIIIGQLASLTYFMILLI 320
Cdd:MTH00131 285 PNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLV 364

                        330
                 ....*....|....
gi 410025560 321 LFPIIASLENKMLN 334
Cdd:MTH00131 365 LMPLAGWLENKALE 378
CYTB MTH00100
cytochrome b; Provisional
 1-333 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 590.84  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560   1 MITGLLLAMHYTSDITLAFTSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLYKETWNTGVILLLTLM 80
Cdd:MTH00100  45 ILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVM 124

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560  81 ATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFIIAGLTFIHLTFLHETG 160
Cdd:MTH00100 125 ATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETG 204

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560 161 SNNPLGIPSNCDKIPFHPYFSMKDVLGIIILLLPLMSLALFAPNFLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSI 240
Cdd:MTH00100 205 SNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSI 284

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560 241 PNKLGGVLALAASVLILFLAPFLHMSKQRAMTFRPLSQSLFWVLVTNLLVLTWIGSQPVEHPFIIIGQLASLTYFMILLI 320
Cdd:MTH00100 285 PNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILI 364

                        330
                 ....*....|...
gi 410025560 321 LFPIIASLENKML 333
Cdd:MTH00100 365 LMPIASLIENNLL 377
CYTB MTH00074
cytochrome b; Provisional
 1-335 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 575.48  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560   1 MITGLLLAMHYTSDITLAFTSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLYKETWNTGVILLLTLM 80
Cdd:MTH00074  46 IITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVM 125

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560  81 ATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFIIAGLTFIHLTFLHETG 160
Cdd:MTH00074 126 ATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETG 205

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560 161 SNNPLGIPSNCDKIPFHPYFSMKDVLGIIILLLPLMSLALFAPNFLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSI 240
Cdd:MTH00074 206 SNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSI 285

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560 241 PNKLGGVLALAASVLILFLAPFLHMSKQRAMTFRPLSQSLFWVLVTNLLVLTWIGSQPVEHPFIIIGQLASLTYFMILLI 320
Cdd:MTH00074 286 PNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFII 365

                        330
                 ....*....|....*
gi 410025560 321 LFPIIASLENKMLNL 335
Cdd:MTH00074 366 IIPLTGWLENKLLKW 380
CYTB MTH00191
cytochrome b; Provisional
 2-324 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 547.98  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560   2 ITGLLLAMHYTSDITLAFTSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLYKETWNTGVILLLTLMA 81
Cdd:MTH00191  43 LTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMA 122

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560  82 TAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFIIAGLTFIHLTFLHETGS 161
Cdd:MTH00191 123 TAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGS 202

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560 162 NNPLGIPSNCDKIPFHPYFSMKDVLGIIILLLPLMSLALFAPNFLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIP 241
Cdd:MTH00191 203 NNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIP 282

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560 242 NKLGGVLALAASVLILFLAPFLHMSKQRAMTFRPLSQSLFWVLVTNLLVLTWIGSQPVEHPFIIIGQLASLTYFMILLIL 321
Cdd:MTH00191 283 NKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLLL 362


                 ...
gi 410025560 322 FPI 324
Cdd:MTH00191 363 FPL 365
CYTB MTH00156
cytochrome b; Provisional
 2-322 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 542.45  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560   2 ITGLLLAMHYTSDITLAFTSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLYKETWNTGVILLLTLMA 81
Cdd:MTH00156  36 ITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMA 115

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560  82 TAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFIIAGLTFIHLTFLHETGS 161
Cdd:MTH00156 116 TAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGS 195

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560 162 NNPLGIPSNCDKIPFHPYFSMKDVLGIIILLLPLMSLALFAPNFLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIP 241
Cdd:MTH00156 196 NNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIP 275

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560 242 NKLGGVLALAASVLILFLAPFLHMSKQRAMTFRPLSQSLFWVLVTNLLVLTWIGSQPVEHPFIIIGQLASLTYFMILLIL 321
Cdd:MTH00156 276 NKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355


                 .
gi 410025560 322 F 322
Cdd:MTH00156 356 P 356
CYTB MTH00034
cytochrome b; Validated
 1-334 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 531.97  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560   1 MITGLLLAMHYTSDITLAFTSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLYKETWNTGVILLLTLM 80
Cdd:MTH00034  45 IITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTM 124

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560  81 ATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFIIAGLTFIHLTFLHETG 160
Cdd:MTH00034 125 LTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTG 204

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560 161 SNNPLGIPSNCDKIPFHPYFSMKDVLGIIILLLPLMSLALFAPNFLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSI 240
Cdd:MTH00034 205 SNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSI 284

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560 241 PNKLGGVLALAASVLILFLAPFLHMSKQRAMTFRPLSQSLFWVLVTNLLVLTWIGSQPVEHPFIIIGQLASLTYFMILLI 320
Cdd:MTH00034 285 PNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLF 364

                        330
                 ....*....|....
gi 410025560 321 LFPIIASLENKMLN 334
Cdd:MTH00034 365 FFPLISYLENKLIF 378
CYTB MTH00145
cytochrome b; Provisional
 2-333 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 524.85  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560   2 ITGLLLAMHYTSDITLAFTSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLYKETWNTGVILLLTLMA 81
Cdd:MTH00145  47 LTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMG 126

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560  82 TAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFIIAGLTFIHLTFLHETGS 161
Cdd:MTH00145 127 TAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGS 206

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560 162 NNPLGIPSNCDKIPFHPYFSMKDVLGIIILLLPLMSLALFAPNFLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIP 241
Cdd:MTH00145 207 NNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIP 286

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560 242 NKLGGVLALAASVLILFLAPFLHMSKQRAMTFRPLSQSLFWVLVTNLLVLTWIGSQPVEHPFIIIGQLASLTYFMILLIL 321
Cdd:MTH00145 287 NKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLIL 366

                        330
                 ....*....|..
gi 410025560 322 fPIIASLENKML 333
Cdd:MTH00145 367 -PLVQKLWDNIL 377
CYTB MTH00016
cytochrome b; Validated
 1-333 8.80e-178

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 497.28  E-value: 8.80e-178
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560   1 MITGLLLAMHYTSDITLAFTSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLYKETWNTGVILLLTLM 80
Cdd:MTH00016  46 ILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTM 125

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560  81 ATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFIIAGLTFIHLTFLHETG 160
Cdd:MTH00016 126 ATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTG 205

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560 161 SNNPLGIPSNCDKIPFHPYFSMKDVLGIIILLLPLMSLALFAPNFLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSI 240
Cdd:MTH00016 206 SNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSI 285

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560 241 PNKLGGVLALAASVLILFLAPFLHMSKQRAMTFRPLSQSLFWVLVTNLLVLTWIGSQPVEHPFIIIGQLASLTYFMILLI 320
Cdd:MTH00016 286 PNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFMI 365

                        330
                 ....*....|...
gi 410025560 321 lFPIIASLENKML 333
Cdd:MTH00016 366 -NPLLMKLWDKLL 377
CYTB MTH00053
cytochrome b; Provisional
 1-335 2.38e-162

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 458.02  E-value: 2.38e-162
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560   1 MITGLLLAMHYTSDITLAFTSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLYKETWNTGVILLLTLM 80
Cdd:MTH00053  46 IITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMI 125

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560  81 ATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFIIAGLTFIHLTFLHETG 160
Cdd:MTH00053 126 LTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDG 205

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560 161 SNNPLGIPSNCDKIPFHPYFSMKDVLGIIILLLPLMSLALFAPNFLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSI 240
Cdd:MTH00053 206 SNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSI 285

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560 241 PNKLGGVLALAASVLILFLAPFLHMSKQRAMTFRPLSQSLFWVLVTNLLVLTWIGSQPVEHPFIIIGQLASLTYFMILLI 320
Cdd:MTH00053 286 PNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLI 365

                        330
                 ....*....|....*
gi 410025560 321 LFPIIASLENKMLNL 335
Cdd:MTH00053 366 LMPLAGYLENKLLKL 380
CYTB MTH00022
cytochrome b; Validated
 1-334 4.71e-161

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 454.93  E-value: 4.71e-161
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560   1 MITGLLLAMHYTSDITLAFTSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLYKETWNTGVILLLTLM 80
Cdd:MTH00022  44 IITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTM 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560  81 ATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFIIAGLTFIHLTFLHETG 160
Cdd:MTH00022 124 ATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDG 203

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560 161 SNNPLGIPSNCDKIPFHPYFSMKDVLGIIILLLPLMSLALFAPNFLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSI 240
Cdd:MTH00022 204 SNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSI 283

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560 241 PNKLGGVLALAASVLILFLAPFLHMSKQRAMTFRPLSQSLFWVLVTNLLVLTWIGSQPVEHPFIIIGQLASLTYFMILLI 320
Cdd:MTH00022 284 PNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLV 363

                        330
                 ....*....|....
gi 410025560 321 LFPIIASLENKMLN 334
Cdd:MTH00022 364 LIPLLGELENQLLF 377
CYTB MTH00224
cytochrome b; Provisional
 1-334 1.74e-150

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 428.19  E-value: 1.74e-150
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560   1 MITGLLLAMHYTSDITLAFTSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLYKETWNTGVILLLTLM 80
Cdd:MTH00224  46 VLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTM 125

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560  81 ATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFIIAGLTFIHLTFLHETG 160
Cdd:MTH00224 126 ATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTG 205

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560 161 SNNPLGIPSNCDKIPFHPYFSMKDVLGIIILLLPLMSLALFAPNFLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSI 240
Cdd:MTH00224 206 SNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSI 285

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560 241 PNKLGGVLALAASVLILFLAPFLHMSKQRAMTFRPLSQSLFWVLVTNLLVLTWIGSQPVEHPFIIIGQLASLTYFmILLI 320
Cdd:MTH00224 286 PNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYF-SYFI 364

                        330
                 ....*....|....
gi 410025560 321 LFPIIASLENKMLN 334
Cdd:MTH00224 365 ISPAISKLWDDLLN 378
CYTB MTH00033
cytochrome b; Provisional
 1-330 1.87e-119

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 349.24  E-value: 1.87e-119
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560   1 MITGLLLAMHYTSDITLAFTSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLYKETWNTGVILLLTLM 80
Cdd:MTH00033  42 ILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMM 121

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560  81 ATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFIIAGLTFIHLTFLHETG 160
Cdd:MTH00033 122 LTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKG 201

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560 161 SNNPLGIPSNCDKIPFHPYFSMKDVLGIIILLLPLMSLALFA--PNFLGDPENFTPANPLVTPPHIKPEWYFLFAYAILR 238
Cdd:MTH00033 202 SNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILR 281

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560 239 SIPNKLGGVLALAASVLILFLAPFLHMSKQRAMTFRPLSQSLFWVLVTNLLVLTWIGSQPV-EHPFIIIGQLASLTYFMI 317
Cdd:MTH00033 282 SIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILTWIGSAPAgADPYVLIGRIATIFYFGY 361

                        330
                 ....*....|...
gi 410025560 318 LLILFPIIASLEN 330
Cdd:MTH00033 362 FLVLVPLLGYLSN 374
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
2-329 6.21e-119

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 348.32  E-value: 6.21e-119
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560   2 ITGLLLAMHYTSDITLAFTSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGFYYGSYlyKE----TWNTGVILLL 77
Cdd:COG1290   55 LTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--KKprelNWIIGVLLLL 132

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560  78 TLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFIIAGLTFIHLTFL 156
Cdd:COG1290  133 LTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLL 212

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560 157 HETGSNNPLGI----PSNCDKIPFHPYFSMKDVLGIIILLLPLMSLALFAPNflGDPENFTPANPLVTPPHIKPEWYFLF 232
Cdd:COG1290  213 HRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLP 290

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560 233 AYAILRSIP--NKLGGVLALAASVLILFLAPFLHMSKQRAMTFRPLSQSLFWVLVTNLLVLTWIGSQPVehPFIIIGQLA 310
Cdd:COG1290  291 FYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP--IATLLGSIN 368

                        330
                 ....*....|....*....
gi 410025560 311 SLTYFMILLILFPIIASLE 329
Cdd:COG1290  369 TVTYFAFFLIVLPILAFIE 387
CYTB MTH00086
cytochrome b; Provisional
 1-322 1.54e-101

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 302.63  E-value: 1.54e-101
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560   1 MITGLLLAMHYTSDITLAFTSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLYKETWNTGVILLLTLM 80
Cdd:MTH00086  34 ILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVM 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560  81 ATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFIIAGLTFIHLTFLHETG 160
Cdd:MTH00086 114 MEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTG 193

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560 161 SNNPLGIPSNCDKIPFHPYFSMKDvLGIIILLLPLMSLALFAPNFLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSI 240
Cdd:MTH00086 194 STSSLYCHGDYDKICFGPEYWNKD-AYNIIFWLVFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRAI 272

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560 241 PNKLGGVLALAASVLILFLAPFLhmsKQRAMTFRPLSQSLFWVLVTNLLVLTWIGSQPVEHPFIIIGQLASLTYFMILLI 320
Cdd:MTH00086 273 PNKVLGVIALLMSIVVFYFFIFV---NNYTSCLNKLNKFLVFSFIVVNVILSWLGQCLVEYPFLFLSQIFSFIYFFLILL 349


                 ..
gi 410025560 321 LF 322
Cdd:MTH00086 350 ML 351
CYTB MTH00046
cytochrome b; Validated
 2-320 1.12e-80

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 249.51  E-value: 1.12e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560   2 ITGLLLAMHYTSDITLAFTSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLYKETWNTGVILLLTLMA 81
Cdd:MTH00046  37 LTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMV 116

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560  82 TAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFIIAGLTFIHLTFLHETGS 161
Cdd:MTH00046 117 EAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGS 196

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560 162 NNPLGIPSN-CDKIPFHPYFSMKDVLGIIILLLPLMSLALFAPNFLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSI 240
Cdd:MTH00046 197 SNPLFSSNGySDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSI 276

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560 241 PNKLGGvLALAASVLILFLAPflhmSKQRAMTFRPLSQSLFWVLVTNLLVLTWIGSQPVEHPFIIIGQLASLTYFMILLI 320
Cdd:MTH00046 277 NSKIGG-LVLVLSFLFFLWVP----TFNGSSVYSVWRQVNFWLIVSLFFSLSYLGGCHPEYPYLLISQLFSVLMVLLLFI 351
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 2-162 3.71e-78

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 237.65  E-value: 3.71e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560   2 ITGLLLAMHYTSDITLAFTSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGFYYGSY--LYKETWNTGVILLLTL 79
Cdd:cd00284   38 LTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLT 117

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560  80 MATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFIIAGLTFIHLTFLHET 159
Cdd:cd00284  118 MATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQ 197


                 ...
gi 410025560 160 GSN 162
Cdd:cd00284  198 GSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-160 1.00e-67

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 210.32  E-value: 1.00e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560    1 MITGLLLAMHYTSDITLAFTSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGFYYG--SYLYKETWNTGVILLLT 78
Cdd:pfam00033  28 ILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVILLVL 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560   79 LMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFIIAGLTFIHLTFLHE 158
Cdd:pfam00033 108 TMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHE 187


                  ..
gi 410025560  159 TG 160
Cdd:pfam00033 188 TG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 163-310 2.18e-52

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 169.75  E-value: 2.18e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560 163 NPLGIPSNCDKIPFHPYFSMKDVLGIIILLLPLMSLALFAPNFLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 242
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 410025560 243 KLGGVLALAASVLILFLAPFLHMSKQRAmTFRPLSQSLFWVLVTNLLVLTWIGSQPVEHPFIIIGQLA 310
Cdd:cd00290   81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
214-314 3.34e-48

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 157.26  E-value: 3.34e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560  214 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLAPFLHMSKQRAMTFRPLSQSLFWVLVTNLLVLTW 293
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 410025560  294 IGSQPVEHPFIIIGQLASLTY 314
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
44-209 2.48e-41

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 142.00  E-value: 2.48e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560   44 SFFFICIYLHIGRGFYYGSYLYKE--TWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAW 121
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560  122 GGFSVDNPTLTRFFALHF-LLPFIIAGLTFIHLTFLHETGSNNPLGIPSNCDKIPFHPYFSMKDVLGIIILLLPLMSLAL 200
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 410025560  201 FAPNFLGDP 209
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 3-165 3.08e-32

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 119.82  E-value: 3.08e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560   3 TGLLLAMHYTSDITLAFTSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLYKE--TWNTGVILLLTLM 80
Cdd:PRK03735  58 SGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRelNWVVGVLIFFVTV 137

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560  81 ATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFIIAGLTFIHLTFLHET 159
Cdd:PRK03735 138 GLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMIRKQ 217


                 ....*.
gi 410025560 160 GSNNPL 165
Cdd:PRK03735 218 GISGPL 223
petB CHL00070
cytochrome b6
 3-165 5.75e-29

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 110.97  E-value: 5.75e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560   3 TGLLLAMHYTSDITLAFTSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLYKE--TWNTGVILLLTLM 80
Cdd:CHL00070  50 TGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRelTWVTGVVLAVLTV 129

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560  81 ATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFIIAGLTFIHLTFLHET 159
Cdd:CHL00070 130 SFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLMIRKQ 209


                 ....*.
gi 410025560 160 GSNNPL 165
Cdd:CHL00070 210 GISGPL 215
petD CHL00058
cytochrome b6/f complex subunit IV
 214-295 5.21e-12

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 63.10  E-value: 5.21e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560 214 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLAPFL-HMSKQRAMTFRPLSQSLFwvlVTNLLVLT 292
Cdd:CHL00058  65 PADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLeNVNKFQNPFRRPVATTVF---LIGTAVAL 141


                 ...
gi 410025560 293 WIG 295
Cdd:CHL00058 142 WLG 144
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 214-295 2.55e-11

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 61.35  E-value: 2.55e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560 214 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLAPFL-HMSKQRAMTFRPLSQSLFWVlvtNLLVLT 292
Cdd:COG5679   66 PADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIeNVNKFQNPFRRPVATAVFLF---GTLVTL 142


                 ...
gi 410025560 293 WIG 295
Cdd:COG5679  143 WLG 145
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 214-295 2.52e-10

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 58.27  E-value: 2.52e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410025560  214 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLAPFLHMSKQRAMTF-RPLSQSLFwvlVTNLLVLT 292
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFrRPVATTVF---LFGTVVAL 141


                  ...
gi 410025560  293 WIG 295
Cdd:TIGR01156 142 WLG 144
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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