|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00135 |
NADH dehydrogenase subunit 2; Provisional |
1-347 |
2.31e-180 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177193 [Multi-domain] Cd Length: 347 Bit Score: 502.80 E-value: 2.31e-180
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 1 MNPYILMTLAFGLGLGTLITLTSSHWLLAWMGLEMNTLAIIPLLAQHHHPRATEATTKYFLTQATAAAMLLFATTTNAWL 80
Cdd:MTH00135 1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 81 SGQWEIQQMTHPLPTTMITLALALKIGLAPLHAWLPEVLQGLDLTAGLILSTWQKIAPFALLMQINAPTPLMLISLSLLS 160
Cdd:MTH00135 81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPTNPTLLITLGLTS 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 161 ILIGGWGGLNQNQLRKILAYSSIAHLGWMILVLQFSPSLTLLTLSLYIIMTSSLFLSFKTNKTTTVNSLATSWAKTPTLT 240
Cdd:MTH00135 161 TLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALT 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 241 LLIPPILLSLGGLPPLTGFMPKWLILQELTKQDLALAATIAALSALLSLYFYLRLCYAMTLTMAPNTITNTTPWRLPSTQ 320
Cdd:MTH00135 241 ALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPSTQ 320
|
330 340
....*....|....*....|....*..
gi 418970741 321 LSLPLSITACLAICLLPLTPTILTMTT 347
Cdd:MTH00135 321 LTLPLAISTTATLMLLPLTPAILALLT 347
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
23-267 |
2.62e-16 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 78.12 E-value: 2.62e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 23 SSHWLLAWMGLEMNTLAIIPLLA-QHHHPRATEATTKYFLTQATAAAMLLFATTTNAWLSGQWEIQQMTHPLPTT----- 96
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGlnssg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 97 ------MITLALALKIGLAPLHAWLPEVLQGLDLTAGLIL-STWQKIAPFAL-----LMQINAPT-PLMLISLSLLSILI 163
Cdd:pfam00361 81 llllflLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLirrslLYLPSSPFiQQILLILAIISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 164 GGWGGLNQNQLRKILAYSSIAHLGWMILVL----QFSPSLTLLTLSLYIIMTSSLFL-----SFKTNKTTTVNSLATSWA 234
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240
|
250 260 270
....*....|....*....|....*....|...
gi 418970741 235 KTPTLTLLIPPILLSLGGLPPLTGFMPKWLILQ 267
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
4-299 |
1.94e-13 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 70.92 E-value: 1.94e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 4 YILMTLAFglgLGTLITLTSSHWLLAWMGLEMNTLAIIPLLA-QHHHPRATEATTKYFLTQATAAAMLLF-------AT- 74
Cdd:COG1007 105 YALLLFAT---LGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisllygATg 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 75 TTN-----AWLSGQWEIQQMThPLPTTMITLALALKIGLAPLHAWLPEVLQGLDLTAGLILSTWQKIAPFALLMQI--NA 147
Cdd:COG1007 182 SLNlagiaAALAAGGANSPLL-LLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLlvEA 260
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 148 PTPLMLISLSLLSI------LIGGWGGLNQNQLRKILAYSSIAHLGWMILVL----QFSPSLTLLTLSLYIIMTSSLF-- 215
Cdd:COG1007 261 FPGLAADWQLLLAVlavlsmTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLaagtPLGVSAALFYLLAYLFMNLGAFav 340
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 216 ---LSFKTNKTTTVNSLATSWAKTPTLTLLIPPILLSLGGLPPLTGFMPKWLILQELTKQDLALAATIAALSALLSLYFY 292
Cdd:COG1007 341 illLSRKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYY 420
|
....*..
gi 418970741 293 LRLCYAM 299
Cdd:COG1007 421 LRVVKAM 427
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
4-210 |
3.41e-12 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 67.28 E-value: 3.41e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 4 YILMTLAFglgLGTLITLTSSHWLLAWMGLEMNTLAIIPLLA-QHHHPRATEATTKYFLTQATAAAMLLFATTTNAWLSG 82
Cdd:TIGR01770 105 YILLLFAL---LGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTG 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 83 QWEIQQMTHPLPTTMIT------------LALALKIGLAPLHAWLPEVLQGLDLTAGLILSTWQKIAPFALLMQI----- 145
Cdd:TIGR01770 182 SLNFEDLLLFLSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLflyil 261
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 418970741 146 ---NAPTPLMLISLSLLSILIGGWGGLNQNQLRKILAYSSIAHLGWMILVLQFSPSLTLLTLSLYIIM 210
Cdd:TIGR01770 262 fgfSEAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIFI 329
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00135 |
NADH dehydrogenase subunit 2; Provisional |
1-347 |
2.31e-180 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177193 [Multi-domain] Cd Length: 347 Bit Score: 502.80 E-value: 2.31e-180
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 1 MNPYILMTLAFGLGLGTLITLTSSHWLLAWMGLEMNTLAIIPLLAQHHHPRATEATTKYFLTQATAAAMLLFATTTNAWL 80
Cdd:MTH00135 1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 81 SGQWEIQQMTHPLPTTMITLALALKIGLAPLHAWLPEVLQGLDLTAGLILSTWQKIAPFALLMQINAPTPLMLISLSLLS 160
Cdd:MTH00135 81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPTNPTLLITLGLTS 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 161 ILIGGWGGLNQNQLRKILAYSSIAHLGWMILVLQFSPSLTLLTLSLYIIMTSSLFLSFKTNKTTTVNSLATSWAKTPTLT 240
Cdd:MTH00135 161 TLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALT 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 241 LLIPPILLSLGGLPPLTGFMPKWLILQELTKQDLALAATIAALSALLSLYFYLRLCYAMTLTMAPNTITNTTPWRLPSTQ 320
Cdd:MTH00135 241 ALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPSTQ 320
|
330 340
....*....|....*....|....*..
gi 418970741 321 LSLPLSITACLAICLLPLTPTILTMTT 347
Cdd:MTH00135 321 LTLPLAISTTATLMLLPLTPAILALLT 347
|
|
| ND2 |
MTH00070 |
NADH dehydrogenase subunit 2; Provisional |
1-345 |
2.26e-125 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177142 [Multi-domain] Cd Length: 346 Bit Score: 363.47 E-value: 2.26e-125
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 1 MNPYILMTLAFGLGLGTLITLTSSHWLLAWMGLEMNTLAIIPLLAQHHHPRATEATTKYFLTQATAAAMLLFATTTNAWL 80
Cdd:MTH00070 1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 81 SGQWEIQQMTHPLPTTMITLALALKIGLAPLHAWLPEVLQGLDLTAGLILSTWQKIAPFALLMQINAPT-PLMLISLSLL 159
Cdd:MTH00070 81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLnSNLLIIMGLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 160 SILIGGWGGLNQNQLRKILAYSSIAHLGWMILVLQFSPSLTLLTLSLYIIMTSSLFLSFKTNKTTTVNSLATSWAKTPTL 239
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 240 TLLIPPILLSLGGLPPLTGFMPKWLILQELTKQDLALAATIAALSALLSLYFYLRLCYAMTLTMAPNTITNTTPWRLpST 319
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRF-KN 319
|
330 340
....*....|....*....|....*.
gi 418970741 320 QLSLPLSITACLAICLLPLTPTILTM 345
Cdd:MTH00070 320 KTNNLLSLTIILSLMLLPITPTILNL 345
|
|
| ND2 |
MTH00112 |
NADH dehydrogenase subunit 2; Provisional |
1-346 |
1.35e-112 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214423 [Multi-domain] Cd Length: 346 Bit Score: 331.02 E-value: 1.35e-112
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 1 MNPYILMTLAFGLGLGTLITLTSSHWLLAWMGLEMNTLAIIPLLAQHHHPRATEATTKYFLTQATAAAMLLFATTTNAWL 80
Cdd:MTH00112 1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 81 SGQWEIQQMTHPLPTTMITLALALKIGLAPLHAWLPEVLQGLDLTAGLILSTWQKIAPFALLMQI-NAPTPLMLISLSLL 159
Cdd:MTH00112 81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTsNSLNPTLLLTLAIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 160 SILIGGWGGLNQNQLRKILAYSSIAHLGWMILVLQFSPSLTLLTLSLYIIMTSSLFLSFKTNKTTTVNSLATSWAKTPTL 239
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 240 TLLIPPILLSLGGLPPLTGFMPKWLILQELTKQDLALAATIAALSALLSLYFYLRLCYAMTLTMAPNTITNTTPWRLPST 319
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320
|
330 340
....*....|....*....|....*..
gi 418970741 320 QlSLPLSITACLAICLLPLTPTILTMT 346
Cdd:MTH00112 321 K-NTLTATLTTLSTLLLPLSPMILTII 346
|
|
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
1-346 |
2.59e-109 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 322.57 E-value: 2.59e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 1 MNPYILMTLAFGLGLGTLITLTSSHWLLAWMGLEMNTLAIIPLLAQHHHPRATEATTKYFLTQATAAAMLLFATTTNAWL 80
Cdd:MTH00105 1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 81 SGQWEIQQMTHPLPTTMITLALALKIGLAPLHAWLPEVLQGLDLTAGLILSTWQKIAPFALLMQINAPT-PLMLISLSLL 159
Cdd:MTH00105 81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSInPNLLLTLAIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 160 SILIGGWGGLNQNQLRKILAYSSIAHLGWMILVLQFSPSLTLLTLSLYIIMTSSLFLSFKTNKTTTVNSLATSWAKTPTL 239
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 240 TLLIPPILLSLGGLPPLTGFMPKWLILQELTKQDLALAATIAALSALLSLYFYLRLCYAMTLTMAPNTITNTTPWRLPST 319
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320
|
330 340
....*....|....*....|....*..
gi 418970741 320 QLSLPLSITACLAICLLPLTPTILTMT 346
Cdd:MTH00105 321 KPMTLLPTLIILSTMLLPLTPMLSILE 347
|
|
| ND2 |
MTH00200 |
NADH dehydrogenase subunit 2; Provisional |
1-347 |
1.44e-102 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177246 [Multi-domain] Cd Length: 347 Bit Score: 305.35 E-value: 1.44e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 1 MNPYILMTLAFGLGLGTLITLTSSHWLLAWMGLEMNTLAIIPLLAQHHHPRATEATTKYFLTQATAAAMLLFATTTNAWL 80
Cdd:MTH00200 1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 81 SGQWEIQQMTHPLPTTMITLALALKIGLAPLHAWLPEVLQGLDLTAGLILSTWQKIAPFALLMQIN-APTPLMLISLSLL 159
Cdd:MTH00200 81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLApALNSNILLLLGLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 160 SILIGGWGGLNQNQLRKILAYSSIAHLGWMILVLQFSPSLTLLTLSLYIIMTSSLFLSFKTNKTTTVNSLATSWAKTPTL 239
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 240 TLLIPPILLSLGGLPPLTGFMPKWLILQELTKQDLALAATIAALSALLSLYFYLRLCYAMTLTMAPNTITNTTPWRLPST 319
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320
|
330 340
....*....|....*....|....*...
gi 418970741 320 qLSLPLSITACLAICLLPLTPTILTMTT 347
Cdd:MTH00200 321 -SNLLVGLLLLLSILGLPLTPQLLFLFF 347
|
|
| ND2 |
MTH00041 |
NADH dehydrogenase subunit 2; Validated |
1-344 |
3.96e-80 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 177116 [Multi-domain] Cd Length: 349 Bit Score: 248.31 E-value: 3.96e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 1 MNPYILMTLAFGLGLGTLITLTSSHWLLAWMGLEMNTLAIIPLLAQHHHPRATEATTKYFLTQATAAAMLLFATTTNAWL 80
Cdd:MTH00041 1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 81 SGQWEIQQMTHPLPTTMITLALALKIGLAPLHAWLPEVLQGLDLTAGLILSTWQKIAPFALLMQI-NAPTPLMLISLSLL 159
Cdd:MTH00041 81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISIsNLLNSNILILCGIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 160 SILIGGWGGLNQNQLRKILAYSSIAHLGWMILVLQFSPSLTLLTLSLYIIMTSSLFLSFKTNKTTTVNSLATSWAKTPTL 239
Cdd:MTH00041 161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 240 TLLIPPILLSLGGLPPLTGFMPKWLILQELTKQDLALAATIAALSALLSLYFYLRLCYAMTLTMAPNTITNTTPWRLPST 319
Cdd:MTH00041 241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGN 320
|
330 340
....*....|....*....|....*
gi 418970741 320 QLSLPLSITACLAICLLPLTPTILT 344
Cdd:MTH00041 321 ITVYGVILSILSSISILGLLLIPLF 345
|
|
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-301 |
1.73e-49 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 168.46 E-value: 1.73e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 1 MNPYILMTLAFgLGLGTLITLTSSHWLLAWMGLEMNTLAIIPLLAQHHHPRATEATTKYFLTQATAAAMLLFATTTNAWL 80
Cdd:MTH00160 3 MNSSKLLFLST-LIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLN 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 81 SGqweiqqMTHPLPTTMITLALALKIGLAPLHAWLPEVLQGLDLTAGLILSTWQKIAPFALLMQINapTPLMLISLSLLS 160
Cdd:MTH00160 82 LM------LFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLI--NNNFIIIIIILS 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 161 ILIGGWGGLNQNQLRKILAYSSIAHLGWMILVLQFSPSLTLLTLSLYIIMTSSLFLSFKTNKTTTVNSLATSWAKTPTLT 240
Cdd:MTH00160 154 AIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIK 233
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 418970741 241 LLIPPILLSLGGLPPLTGFMPKWLILQELTKQDLALAATIAALSALLSLYFYLRLCYAMTL 301
Cdd:MTH00160 234 FLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLM 294
|
|
| ND2 |
MTH00144 |
NADH dehydrogenase subunit 2; Provisional |
13-318 |
1.41e-43 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214432 [Multi-domain] Cd Length: 328 Bit Score: 153.12 E-value: 1.41e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 13 LGLGTLITLTSSHWLLAWMGLEMNTLAIIPLLAQHHHPRATEATTKYFLTQATAAAMLLFATTTNAWLSGQWEIqqmthp 92
Cdd:MTH00144 13 MVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFS------ 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 93 lpTTMITLALALKIGLAPLHAWLPEVLQGLDLTAGLILSTWQKIAPFALLMQIN--APTPLMLISLSLLSILIGGWGGLN 170
Cdd:MTH00144 87 --MSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLdlYWLAYLLCVISVLSALVGSIGGLN 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 171 QNQLRKILAYSSIAHLGWMILVLQFSPSLTLLTLSLYIIMTSSLFLSFKTNKTTTVNSLaTSWAKTPTLTLLIPPILLSL 250
Cdd:MTH00144 165 QTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDL-GSLKPSYKTGLSIISLLLSL 243
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 418970741 251 GGLPPLTGFMPKWLILQELTKQDLALAATIAALSALLSLYFYLRLCYAMTLTMAPNTITNTTPWRLPS 318
Cdd:MTH00144 244 GGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKVLNSS 311
|
|
| ND2 |
MTH00011 |
NADH dehydrogenase subunit 2; Validated |
15-326 |
3.93e-43 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 164587 [Multi-domain] Cd Length: 330 Bit Score: 151.86 E-value: 3.93e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 15 LGTLITLTSSHWLLAWMGLEMNTLAIIPLLAQHHHPRATEATTKYFLTQATAAAMLLFATTTnawlsgQWEIQQMTHPLP 94
Cdd:MTH00011 17 LGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTM------MWSFPSLLKNIT 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 95 TTMITLALALKIGLAPLHAWLPEVLQGLDLTAGLILSTWQKIAPFALLMQINAPTPL-MLISLSLLSILIGGWGGLNQNQ 173
Cdd:MTH00011 91 ALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILpMMTSMAAMSALAGGLGGMNQTQ 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 174 LRKILAYSSIAHLGWMILVLQFSPSLTLLTLSLYIIMTSSLFLSFKTNKTTTVNSLATSWAKTPTLTLLIPPILLSLGGL 253
Cdd:MTH00011 171 LRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSLGGL 250
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 418970741 254 PPLTGFMPKWLILQELTKQDLALAATIAALSALLSLYFYLRLCYAMTlTMAPNTITNTTPWRLPSTQLSLPLS 326
Cdd:MTH00011 251 PPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFM-YLSPTFSSLKSAPYEPKTKILISMC 322
|
|
| ND2 |
MTH00197 |
NADH dehydrogenase subunit 2; Provisional |
7-297 |
1.42e-37 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177244 [Multi-domain] Cd Length: 323 Bit Score: 137.11 E-value: 1.42e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 7 MTLAFGLGLGTLITLTSSHWLLAWMGLEMNTLAIIPLLAQHHHPRATEATTKYFLTQATAAAMLLF---ATTTNAWLSgq 83
Cdd:MTH00197 1 FLFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMggsLSFSNLYLS-- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 84 weiqqmthPLPTTMITLALALKIGLAPLHAWLPEVLQGLDLTAGLILSTWQKIAPFALLMQINApTPLMLISLSLLSILI 163
Cdd:MTH00197 79 --------LLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSS-SFMGLLICSVLSSLI 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 164 GGWGGLNQNQLRKILAYSSIAHLGWMILVLQFSPSLTLLTLSLYIIMTSSLFLSFKTNKTTTVNSLATSWAKTPTLTLLI 243
Cdd:MTH00197 150 GGIGGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFL 229
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 418970741 244 PPILLSLGGLPPLTGFMPKWLILQELTKQDLALAATIAALSALLSLYFYLRLCY 297
Cdd:MTH00197 230 GLSFLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAY 283
|
|
| ND2 |
MTH00199 |
NADH dehydrogenase subunit 2; Provisional |
13-191 |
2.14e-19 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177245 [Multi-domain] Cd Length: 460 Bit Score: 88.92 E-value: 2.14e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 13 LGLGTLITLTSSHWLLAWMGLEMNTLAIIPLLA-QHHHPRATEATTKYFLTQATAAAMLLFATTTNAWLSGQWEIQQMTH 91
Cdd:MTH00199 106 VALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIQGINS 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 92 PLPT----TMITLALALKIGLAPLHAWLPEVLQGLDLTAGLILSTWQKIAPFALLMQInAPTPLMLISLSLLSILIGGWG 167
Cdd:MTH00199 186 ILTGdvgkILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQI-GPVTNVVLICAVLSIIYGAIG 264
|
170 180
....*....|....*....|....
gi 418970741 168 GLNQNQLRKILAYSSIAHLGWMIL 191
Cdd:MTH00199 265 ALNQTKIKRLLAYSGIGHMGFILF 288
|
|
| ND2 |
MTH00196 |
NADH dehydrogenase subunit 2; Provisional |
15-222 |
4.11e-19 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214453 [Multi-domain] Cd Length: 365 Bit Score: 87.01 E-value: 4.11e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 15 LGTLITLTSSHWLLAWMGLEMNTLAIIPLLAQHHHP-RATEATTKYFLTQATAAAMLLFATTTNAWLSGQWEIQ------ 87
Cdd:MTH00196 4 LGILCLISSSNWLSVYLAIELQTLSLFILIAQNRGSgYSAEAGLKYFVLGALSSGLFLFGCALLCGTTGGLHLSyinlvl 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 88 -------QMTHPLPTTMITLALALKIGLAPLHAWLPEVLQGLDLTAGLILSTWQKIAPFALLMQINaPTPLMLISLSLLS 160
Cdd:MTH00196 84 nsgqsfsSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIG-LNVNILLIGGLFS 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 418970741 161 ILIGGWGGLNQNQLRKILAYSSIAHLGWMILVLQF----SPSLTLLTLSLYIIMTSSLF---LSFKTNK 222
Cdd:MTH00196 163 LFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIgsfeSIQASLVYLFIYIIMSICVFsiiLALNVYK 231
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
23-267 |
2.62e-16 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 78.12 E-value: 2.62e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 23 SSHWLLAWMGLEMNTLAIIPLLA-QHHHPRATEATTKYFLTQATAAAMLLFATTTNAWLSGQWEIQQMTHPLPTT----- 96
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGlnssg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 97 ------MITLALALKIGLAPLHAWLPEVLQGLDLTAGLIL-STWQKIAPFAL-----LMQINAPT-PLMLISLSLLSILI 163
Cdd:pfam00361 81 llllflLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLirrslLYLPSSPFiQQILLILAIISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 164 GGWGGLNQNQLRKILAYSSIAHLGWMILVL----QFSPSLTLLTLSLYIIMTSSLFL-----SFKTNKTTTVNSLATSWA 234
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240
|
250 260 270
....*....|....*....|....*....|...
gi 418970741 235 KTPTLTLLIPPILLSLGGLPPLTGFMPKWLILQ 267
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
|
|
| PRK05777 |
PRK05777 |
NADH-quinone oxidoreductase subunit NuoN; |
4-193 |
9.28e-15 |
|
NADH-quinone oxidoreductase subunit NuoN;
Pssm-ID: 235603 [Multi-domain] Cd Length: 476 Bit Score: 74.86 E-value: 9.28e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 4 YILMTLAFglgLGTLITLTSSHWLLAWMGLEMNTLAIIPLLAQH-HHPRATEATTKYFLTQATAAAMLLF---------A 73
Cdd:PRK05777 106 YLLVLFAL---LGMMVMVSANDLLTLFLGLELLSLPLYALAALRrDRRRSLEAAIKYFVLGALASGFLLYgmsllygatG 182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 74 TTTNAWLSGQWEIQQMTHPLPTT---MITLALALKIGLAPLHAWLPEVLQGLDLTAGLILSTWQKIAPFALLMQI--NAP 148
Cdd:PRK05777 183 SLSFAGIAKALADGSGNSLLLLFglvFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLLRLlvVAF 262
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 418970741 149 TPL------MLISLSLLSILIGGWGGLNQNQLRKILAYSSIAHLGWMILVL 193
Cdd:PRK05777 263 GGLsedwqqVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGL 313
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
4-299 |
1.94e-13 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 70.92 E-value: 1.94e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 4 YILMTLAFglgLGTLITLTSSHWLLAWMGLEMNTLAIIPLLA-QHHHPRATEATTKYFLTQATAAAMLLF-------AT- 74
Cdd:COG1007 105 YALLLFAT---LGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisllygATg 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 75 TTN-----AWLSGQWEIQQMThPLPTTMITLALALKIGLAPLHAWLPEVLQGLDLTAGLILSTWQKIAPFALLMQI--NA 147
Cdd:COG1007 182 SLNlagiaAALAAGGANSPLL-LLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLlvEA 260
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 148 PTPLMLISLSLLSI------LIGGWGGLNQNQLRKILAYSSIAHLGWMILVL----QFSPSLTLLTLSLYIIMTSSLF-- 215
Cdd:COG1007 261 FPGLAADWQLLLAVlavlsmTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLaagtPLGVSAALFYLLAYLFMNLGAFav 340
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 216 ---LSFKTNKTTTVNSLATSWAKTPTLTLLIPPILLSLGGLPPLTGFMPKWLILQELTKQDLALAATIAALSALLSLYFY 292
Cdd:COG1007 341 illLSRKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYY 420
|
....*..
gi 418970741 293 LRLCYAM 299
Cdd:COG1007 421 LRVVKAM 427
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
4-210 |
3.41e-12 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 67.28 E-value: 3.41e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 4 YILMTLAFglgLGTLITLTSSHWLLAWMGLEMNTLAIIPLLA-QHHHPRATEATTKYFLTQATAAAMLLFATTTNAWLSG 82
Cdd:TIGR01770 105 YILLLFAL---LGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTG 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 83 QWEIQQMTHPLPTTMIT------------LALALKIGLAPLHAWLPEVLQGLDLTAGLILSTWQKIAPFALLMQI----- 145
Cdd:TIGR01770 182 SLNFEDLLLFLSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLflyil 261
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 418970741 146 ---NAPTPLMLISLSLLSILIGGWGGLNQNQLRKILAYSSIAHLGWMILVLQFSPSLTLLTLSLYIIM 210
Cdd:TIGR01770 262 fgfSEAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIFI 329
|
|
| ND2 |
MTH00198 |
NADH dehydrogenase subunit 2; Provisional |
13-191 |
1.03e-10 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214454 [Multi-domain] Cd Length: 607 Bit Score: 62.95 E-value: 1.03e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 13 LGLGTLITLTSSHWLLAWMGLEMNTLAIIPLLAQHHHPRAT---------EATTKYFLTQATAAAMLLFATTTNAWLSGQ 83
Cdd:MTH00198 197 VGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGN 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 84 --------------WEIQQMTHPLPTTMITLALALKIGLAPLHAWLPEVLQGLDLTAGLILSTWQKIAPFALLMQINAPT 149
Cdd:MTH00198 277 egmlgtilsatletTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSLVITS 356
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 418970741 150 PLMLISLSLLSILiGGWGGLNQNQLRKILAYSSIAHLGWMIL 191
Cdd:MTH00198 357 KLLLSVAIISLVV-GAFGALNQTRIKRLLAYSGIGHIGFILI 397
|
|
| NADH_dehy_S2_C |
pfam06444 |
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ... |
290-340 |
1.96e-10 |
|
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.
Pssm-ID: 461914 [Multi-domain] Cd Length: 51 Bit Score: 55.73 E-value: 1.96e-10
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 418970741 290 YFYLRLCYAMTLTMAPNTITNTTPWRLPSTQLSLPLSITACLAICLLPLTP 340
Cdd:pfam06444 1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLLLPTLTTLSILLLPLTP 51
|
|
| HyfB |
COG0651 |
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ... |
15-267 |
9.36e-07 |
|
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 440416 [Multi-domain] Cd Length: 430 Bit Score: 50.15 E-value: 9.36e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 15 LGTLITLTSSHWLLAWMGLEMNTLAIIPLLAQHHHPRATEATTKYFLTQATAAAMLLFATTTNAWLSGQWEIQQMTHPLP 94
Cdd:COG0651 118 AGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAARLA 197
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 95 T----------TMITLALALKIGLAPLHAWLPE-----------VLQGLDLTAGL--ILSTWQKIAPFALLMQINaptpL 151
Cdd:COG0651 198 EldpglllaafALLLVGFGIKAALFPLHFWLPDaypaapspvsaLLSGLLTKVGVyaILRVLTLLFGADPALFLG----T 273
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 152 MLISLSLLSILIGGWGGLNQNQLRKILAYSSIAHLGWMILVLQFSPSLTLLTLSLYII----MTSSLFLS----FKTNKT 223
Cdd:COG0651 274 LLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLLnhalAKALLFLAagaiERATGT 353
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 418970741 224 TTVNSLATSWAKTPTLTLLIPPILLSLGGLPPLTGFMPKWLILQ 267
Cdd:COG0651 354 RDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQ 397
|
|
| PRK06458 |
PRK06458 |
hydrogenase 4 subunit F; Validated |
18-193 |
1.69e-05 |
|
hydrogenase 4 subunit F; Validated
Pssm-ID: 235805 [Multi-domain] Cd Length: 490 Bit Score: 46.46 E-value: 1.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 18 LITLTSSHWLLAWMGLEMNTLAIIPLLAQHHHPRATEATTKYFLTQATAAAMLLFAT----------TTNAWLSGQW-EI 86
Cdd:PRK06458 122 LLALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTilvyanaatvMGDGEMAILWtEL 201
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 87 QQMTHPLPTTMITLALAL-------KIGLAPLHAWLPE-----------VLQGLDLTAGL-ILSTWQKIAPFALlmQINA 147
Cdd:PRK06458 202 LKHASLLDPTLMKLAFVFlligfgtKVGLFPMHAWLPDahseapspvsaLLSGVLLNVALyAVLRYYILIDAAI--GSDF 279
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 418970741 148 PTPLMLISLSLLSILiGGWGGLNQNQLRKILAYSSIAHLGWMILVL 193
Cdd:PRK06458 280 PGRLLLIFGLLSVLV-AAFFLLRQRDIKRLFAYSSIEHMGLIAFAL 324
|
|
| PRK08375 |
PRK08375 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
33-217 |
8.85e-05 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236251 [Multi-domain] Cd Length: 487 Bit Score: 44.10 E-value: 8.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 33 LEMNTLAIIPLLAQHHHPRATEATTKYFLTQATAAAMLLFAT--------TTNAWLSGQWEIQQMTHPLPTTMITLALAL 104
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVgllygvtgTLNMADLAGALAENPTVVTAFGFVLLALAL 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 105 KIGLAPLHAWLPEVLQGLDLTAGLILS-TWQKIAPFALL--------MQINAPTPL--MLISLSLLSILIGGWGGLNQNQ 173
Cdd:PRK08375 215 KAAVFPLHTWLPRAYPAAPPVVTALLSgLVTKVAVYALIriyftvfgGDFRFALGLgwLLAVLALLSMLVGSLAALGQDD 294
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 418970741 174 LRKILAYSSIAHLGWMILVLQFSPSLTLLTLSLYI----IMTSSLFLS 217
Cdd:PRK08375 295 VKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLlhhaLMKGALFLA 342
|
|
| NuoM |
COG1008 |
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ... |
49-191 |
5.46e-04 |
|
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440632 [Multi-domain] Cd Length: 488 Bit Score: 41.61 E-value: 5.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 49 HPRATEATTKYFLTQATAAAMLLFATTTNAWLSGQW--EIQQ-MTHPLPTTM-------ITLALALKIGLAPLHAWLPEV 118
Cdd:COG1008 156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAElAAAPLPLTAqlllflaFFIAFAVKVPMFPFHTWLPDA 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 119 LQ-----GLDLTAGLILstwqKIAPFALLmQINAP-TPLMLISLSLLSILI-------GGWGGLNQNQLRKILAYSSIAH 185
Cdd:COG1008 236 HVeaptaGSVLLAGVLL----KMGGYGLL-RFALPlFPEASAYFAPLLAALgvigiiyGALVALAQTDLKRLIAYSSVSH 310
|
....*.
gi 418970741 186 LGWMIL 191
Cdd:COG1008 311 MGFVLL 316
|
|
| PRK06473 |
PRK06473 |
NADH-quinone oxidoreductase subunit M; |
38-191 |
1.59e-03 |
|
NADH-quinone oxidoreductase subunit M;
Pssm-ID: 235810 [Multi-domain] Cd Length: 500 Bit Score: 40.07 E-value: 1.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 38 LAIIPL---LAQHHHPRATEATTKYFLTQATAAAMLLFATTTNAWLSGQWEI---QQMTHPLPTTM-------ITLALAL 104
Cdd:PRK06473 138 LELIPLyllIAIWGGQRRGYAATKFLLYTAISGILILVSFLGLVWLSGASSFdyePLRSHTLPLSTqllllapILVGFGI 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 105 KIGLAPLHAWLPE-----------VLQGLDLTAG----------LILSTWQKIAPF-ALLMQINAptplmlislsllsiL 162
Cdd:PRK06473 218 KIPLVPFHTWLPDahveastpvsvLLAGVLLKLGtygllrfgvgLFPEAWVYLAPWlATWAVVSV--------------L 283
|
170 180
....*....|....*....|....*....
gi 418970741 163 IGGWGGLNQNQLRKILAYSSIAHLGWMIL 191
Cdd:PRK06473 284 YGASCAIAQKDMKKMVAYSSIGHMGYILL 312
|
|
| NDH_I_M |
TIGR01972 |
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ... |
55-191 |
2.43e-03 |
|
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]
Pssm-ID: 273903 [Multi-domain] Cd Length: 481 Bit Score: 39.54 E-value: 2.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 418970741 55 ATTKYFLTQATAAAMLLFATTTNAWLSG------QWEIQQMTHPLPTTM---ITLALALKIGLAPLHAWLPEV-LQGLDL 124
Cdd:TIGR01972 157 AAMKFFLYTLAGSLLMLLAILGLYFLGGgtfdllELLNLPLPFGVQTWLflaFFIAFAVKVPLFPLHTWLPDAhVEAPTA 236
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 418970741 125 TAGLILSTWQKIAPFALL----------MQINAPtplMLISLSLLSILIGGWGGLNQNQLRKILAYSSIAHLGWMIL 191
Cdd:TIGR01972 237 GSVILAGVLLKMGTYGFLrfnlplfpdaSLYFAP---VLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLL 310
|
|
| |
