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Conserved domains on  [gi|430763282|gb|AGA19706|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Cracticus torquatus torquatus]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-333 2.65e-164

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 461.60  E-value: 2.65e-164
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282   1 FTTSLLLGTTITISSNHWVMAWAGLEINTLAVLPLISKSHHPRAVEAATKYFLVQATASTLVLFSSMTNAWCTGQWDITQ 80
Cdd:MTH00112   9 ITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQ 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282  81 LSHPTSCLIMTAAISMKLGLAPFHFWFPEVLQGSSLTTGLLLSTAMKFPPLTLLFMTSQSLNPTLLTALAILSTAVGGWA 160
Cdd:MTH00112  89 LTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWG 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282 161 GLNQTQIRKIMAFSSISHLGWMAVIIVYNPKLALLGFYLYAMMTAAVFLSLNSIKALKLSTLMTAWTKAPSLSAILLLTL 240
Cdd:MTH00112 169 GLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTL 248

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282 241 LSLAGLPPLTGFLPKWLIIQELTKQDMASTAVIISLLSLLSLFFYLRLAYCATITLPPHTTNHMKQWHNNKPVNLSVAIL 320
Cdd:MTH00112 249 LSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTLTATL 328

                        330
                 ....*....|...
gi 430763282 321 TTLSLVILPLSPM 333
Cdd:MTH00112 329 TTLSTLLLPLSPM 341
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-333 2.65e-164

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 461.60  E-value: 2.65e-164
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282   1 FTTSLLLGTTITISSNHWVMAWAGLEINTLAVLPLISKSHHPRAVEAATKYFLVQATASTLVLFSSMTNAWCTGQWDITQ 80
Cdd:MTH00112   9 ITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQ 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282  81 LSHPTSCLIMTAAISMKLGLAPFHFWFPEVLQGSSLTTGLLLSTAMKFPPLTLLFMTSQSLNPTLLTALAILSTAVGGWA 160
Cdd:MTH00112  89 LTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWG 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282 161 GLNQTQIRKIMAFSSISHLGWMAVIIVYNPKLALLGFYLYAMMTAAVFLSLNSIKALKLSTLMTAWTKAPSLSAILLLTL 240
Cdd:MTH00112 169 GLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTL 248

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282 241 LSLAGLPPLTGFLPKWLIIQELTKQDMASTAVIISLLSLLSLFFYLRLAYCATITLPPHTTNHMKQWHNNKPVNLSVAIL 320
Cdd:MTH00112 249 LSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTLTATL 328

                        330
                 ....*....|...
gi 430763282 321 TTLSLVILPLSPM 333
Cdd:MTH00112 329 TTLSTLLLPLSPM 341
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 6-290 2.26e-25

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 105.97  E-value: 2.26e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282   6 LLGTTITISSNHWVMAWAGLEINTLAVLPLIS-KSHHPRAVEAATKYFLVQATASTLVLF-SSMTNAWcTGQWDITQLSH 83
Cdd:COG1007  112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSLNLAGIAA 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282  84 PTS------------CLIMTAAISMKLGLAPFHFWFPEVLQGSSLTTGLLLSTAMK---FPPLTLLFMTS-QSLNP---T 144
Cdd:COG1007  191 ALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaaFAALLRLLVEAfPGLAAdwqL 270

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282 145 LLTALAILSTAVGGWAGLNQTQIRKIMAFSSISHLGWMAVIIVYNPKLAL--LGFYL--YAMMTAAVF-----LSLNSIK 215
Cdd:COG1007  271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFavillLSRKGGE 350

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 430763282 216 ALKLSTLMTAWTKAPSLSAILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMASTAVIISLLSLLSLFFYLRLAY 290
Cdd:COG1007  351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 6-289 4.18e-24

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 102.33  E-value: 4.18e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282    6 LLGTTITISSNHWVMAWAGLEINTLAVLPLIS-KSHHPRAVEAATKYFLVQATASTLVLFSSMTNAWCTGQWDITQLSHP 84
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282   85 TSC------------LIMTAAISMKLGLAPFHFWFPEVLQGSSLTTGLLLSTAMK---FPPLTLLFMTSQS----LNPTL 145
Cdd:TIGR01770 192 LSNgmlnisllllgiVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaiFAVFLRLFLYILFgfseAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282  146 LTALAILSTAVGGWAGLNQTQIRKIMAFSSISHLGW--MAVIIVYNPKLALLGFYL--YAMMTAAVFLSLNSIKALK--- 218
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYilIGLLAGTLEGIKAVLFYIfiYALMSLGAFGVLSLLRSYKdew 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 430763282  219 ---LSTLMTAWTKAPSLSAILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMASTAVIISLLSLLSLFFYLRLA 289
Cdd:TIGR01770 352 ieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 15-260 1.00e-22

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 95.84  E-value: 1.00e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282   15 SNHWVMAWAGLEINTLAVLPLI-SKSHHPRAVEAATKYFLVQATASTLVLFSSMTNAWCTGQWDITQLSHPTSC------ 87
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGglnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282   88 -----LIMTAAISMKLGLAPFHFWFPEVLQGSSLTTGLLL-STAMKFPPL-----TLLFMTSQSLNPTLLTALAILSTAV 156
Cdd:pfam00361  81 llllfLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYglirrSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282  157 GGWAGLNQTQIRKIMAFSSISHLGWMAVII----VYNPKLALLGFYLYAMMTAAVFL-SLNSIKALKLSTLMTA----WT 227
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcAGSVIYRRVHTRNIRDygglAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 430763282  228 KAPSLSAILLLTLLSLAGLPPLTGFLPKWLIIQ 260
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-333 2.65e-164

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 461.60  E-value: 2.65e-164
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282   1 FTTSLLLGTTITISSNHWVMAWAGLEINTLAVLPLISKSHHPRAVEAATKYFLVQATASTLVLFSSMTNAWCTGQWDITQ 80
Cdd:MTH00112   9 ITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQ 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282  81 LSHPTSCLIMTAAISMKLGLAPFHFWFPEVLQGSSLTTGLLLSTAMKFPPLTLLFMTSQSLNPTLLTALAILSTAVGGWA 160
Cdd:MTH00112  89 LTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWG 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282 161 GLNQTQIRKIMAFSSISHLGWMAVIIVYNPKLALLGFYLYAMMTAAVFLSLNSIKALKLSTLMTAWTKAPSLSAILLLTL 240
Cdd:MTH00112 169 GLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTL 248

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282 241 LSLAGLPPLTGFLPKWLIIQELTKQDMASTAVIISLLSLLSLFFYLRLAYCATITLPPHTTNHMKQWHNNKPVNLSVAIL 320
Cdd:MTH00112 249 LSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTLTATL 328

                        330
                 ....*....|...
gi 430763282 321 TTLSLVILPLSPM 333
Cdd:MTH00112 329 TTLSTLLLPLSPM 341
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 4-332 4.70e-134

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 384.93  E-value: 4.70e-134
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282   4 SLLLGTTITISSNHWVMAWAGLEINTLAVLPLISKSHHPRAVEAATKYFLVQATASTLVLFSSMTNAWCTGQWDITQLSH 83
Cdd:MTH00135  12 SLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGQWDIQQMSH 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282  84 PTSCLIMTAAISMKLGLAPFHFWFPEVLQGSSLTTGLLLSTAMKFPPLTLLFMTSQSlNPTLLTALAILSTAVGGWAGLN 163
Cdd:MTH00135  92 PLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLTSTLVGGWGGLN 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282 164 QTQIRKIMAFSSISHLGWMAVIIVYNPKLALLGFYLYAMMTAAVFLSLNSIKALKLSTLMTAWTKAPSLSAILLLTLLSL 243
Cdd:MTH00135 171 QTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPLILLSL 250

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282 244 AGLPPLTGFLPKWLIIQELTKQDMASTAVIISLLSLLSLFFYLRLAYCATITLPPHTTNHMKQW-HNNKPVNLSVAILTT 322
Cdd:MTH00135 251 GGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWrLPSTQLTLPLAISTT 330

                        330
                 ....*....|
gi 430763282 323 LSLVILPLSP 332
Cdd:MTH00135 331 ATLMLLPLTP 340
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-332 5.53e-132

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 379.65  E-value: 5.53e-132
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282   1 FTTSLLLGTTITISSNHWVMAWAGLEINTLAVLPLISKSHHPRAVEAATKYFLVQATASTLVLFSSMTNAWCTGQWDITQ 80
Cdd:MTH00070   9 LLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTGEWTIMN 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282  81 LSHPTSCLIMTAAISMKLGLAPFHFWFPEVLQGSSLTTGLLLSTAMKFPPLTLLFMTSQSLNPTLLTALAILSTAVGGWA 160
Cdd:MTH00070  89 MQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLLSTLIGGWG 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282 161 GLNQTQIRKIMAFSSISHLGWMAVIIVYNPKLALLGFYLYAMMTAAVFLSLNSIKALKLSTLMTAWTKAPSLSAILLLTL 240
Cdd:MTH00070 169 GLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLTL 248

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282 241 LSLAGLPPLTGFLPKWLIIQELTKQDMASTAVIISLLSLLSLFFYLRLAYCATITLPPHTTNHMKQWHNNKPVNLSVAIL 320
Cdd:MTH00070 249 LSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNKTNNLLSLT 328

                        330
                 ....*....|..
gi 430763282 321 TTLSLVILPLSP 332
Cdd:MTH00070 329 IILSLMLLPITP 340
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 2-333 4.09e-116

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 339.51  E-value: 4.09e-116
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282   2 TTSLLLGTTITISSNHWVMAWAGLEINTLAVLPLISKSHHPRAVEAATKYFLVQATASTLVLFSSMTNAWCTGQWDITQL 81
Cdd:MTH00105  10 YLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYSGQWTITKL 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282  82 SHPTSCLIMTAAISMKLGLAPFHFWFPEVLQGSSLTTGLLLSTAMKFPPLTLLFMTSQSLNPTLLTALAILSTAVGGWAG 161
Cdd:MTH00105  90 TNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAILSILIGGWGG 169

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282 162 LNQTQIRKIMAFSSISHLGWMAVIIVYNPKLALLGFYLYAMMTAAVFLSLNSIKALKLSTLMTAWTKAPSLSAILLLTLL 241
Cdd:MTH00105 170 LNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLILLTLL 249

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282 242 SLAGLPPLTGFLPKWLIIQELTKQDMASTAVIISLLSLLSLFFYLRLAYCATITLPPhTTNHMK---QWHNNKPVNLsVA 318
Cdd:MTH00105 250 SLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFP-STNNMKmkwQFENTKPMTL-LP 327

                        330
                 ....*....|....*
gi 430763282 319 ILTTLSLVILPLSPM 333
Cdd:MTH00105 328 TLIILSTMLLPLTPM 342
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-332 5.74e-97

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 290.72  E-value: 5.74e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282   1 FTTSLLLGTTITISSNHWVMAWAGLEINTLAVLPLISKSHHPRAVEAATKYFLVQATASTLVLFSSMTNAWCTGQWDITQ 80
Cdd:MTH00200   9 FILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQWGISE 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282  81 LSHPTSCLIMTAAISMKLGLAPFHFWFPEVLQGSSLTTGLLLSTAMKFPPLTLLFMTSQSLNPTLLTALAILSTAVGGWA 160
Cdd:MTH00200  89 MLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLLSVLVGGWG 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282 161 GLNQTQIRKIMAFSSISHLGWMAVIIVYNPKLALLGFYLYAMMTAAVFLSLNSIKALKLSTLMTAWTKAPSLSAILLLTL 240
Cdd:MTH00200 169 GLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGLTL 248

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282 241 LSLAGLPPLTGFLPKWLIIQELTKQDMASTAVIISLLSLLSLFFYLRLAYCATITLPPHTTNHMKQWHNNKPVNLSVAIL 320
Cdd:MTH00200 249 LSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSNSNLLVGLL 328

                        330
                 ....*....|..
gi 430763282 321 TTLSLVILPLSP 332
Cdd:MTH00200 329 LLLSILGLPLTP 340
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-330 1.42e-82

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 254.08  E-value: 1.42e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282   1 FTTSLLLGTTITISSNHWVMAWAGLEINTLAVLPLISKSHHPRAVEAATKYFLVQATASTLVLFSSMTNAWCTGQWDITQ 80
Cdd:MTH00041   9 LITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSING 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282  81 LSHPTSCLIMTAAISMKLGLAPFHFWFPEVLQGSSLTTGLLLSTAMKFPPLTLLFMTSQSLNPTLLTALAILSTAVGGWA 160
Cdd:MTH00041  89 PLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGGWG 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282 161 GLNQTQIRKIMAFSSISHLGWMAVIIVYNPKLALLGFYLYAMMTAAVFLSLNSIKALKLSTLMTAWTKAPSLSAILLLTL 240
Cdd:MTH00041 169 GLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSI 248

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282 241 LSLAGLPPLTGFLPKWLIIQELTKQDMASTAVIISLLSLLSLFFYLRLAYCATITLPPHTTNHMKQWHNNKPVNLSVAIL 320
Cdd:MTH00041 249 LSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGNITVYGVIL 328

                        330
                 ....*....|....*.
gi 430763282 321 TTLS------LVILPL 330
Cdd:MTH00041 329 SILSsisilgLLLIPL 344
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-333 1.40e-58

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 191.96  E-value: 1.40e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282   1 FTTSLLLGTTITISSNHWVMAWAGLEINTLAVLPLISKSHHPRAVEAATKYFLVQATASTLVLFSSMTNAWctgqwdITQ 80
Cdd:MTH00160  10 FLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML------NLM 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282  81 LSHPTSCLIMTAAISMKLGLAPFHFWFPEVLQGSSLTTGLLLSTAMKFPPLTLLFMTsqsLNPTLLTALAILSTAVGGWA 160
Cdd:MTH00160  84 LFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIILSAIIGAIG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282 161 GLNQTQIRKIMAFSSISHLGWMAVIIVYNPKLALLGFYLYAMMTAAVFLSLNSIKALKLSTLMTAWTKAPSLSAILLLTL 240
Cdd:MTH00160 161 GLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFLNL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282 241 LSLAGLPPLTGFLPKWLIIQELTKQDMASTAVIISLLSLLSLFFYLRLAYCAtITLPPHTTNHMKQWHNNKPvNLSVAIL 320
Cdd:MTH00160 241 LSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSS-LMLNYNKNKWNLKKKKNKF-SLILNFL 318

                        330
                 ....*....|...
gi 430763282 321 TTLSLVILPLSPM 333
Cdd:MTH00160 319 SFISLFGLILSSL 331
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 1-332 2.05e-48

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 165.34  E-value: 2.05e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282   1 FTTSLLLGTTITISSNHWVMAWAGLEINTLAVLPLISKSHHPRAVEAATKYFLVQATASTLVLFSsMTNAWCTgqwdITQ 80
Cdd:MTH00011  11 FSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLG-MTMMWSF----PSL 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282  81 LSHPTScLIMTAAISMKLGLAPFHFWFPEVLQGSSLTTGLLLSTAMKFPPLTLLFMTSQSLNPTLLTALAILSTAVGGWA 160
Cdd:MTH00011  86 LKNITA-LMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLG 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282 161 GLNQTQIRKIMAFSSISHLGWMAVIIVYNPKLALLGFYLYAMMTAAVFLSLNSIKALKLSTLMTAWTKAPSLSAILLLTL 240
Cdd:MTH00011 165 GMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIML 244

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282 241 LSLAGLPPLTGFLPKWLIIQELTKQDMASTAVIISLLSLLSLFFYLRLAYcATITLPPHTTNhmkqwHNNKPVNLSVAIL 320
Cdd:MTH00011 245 LSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIF-NFMYLSPTFSS-----LKSAPYEPKTKIL 318

                        330
                 ....*....|..
gi 430763282 321 TTLSLVILPLSP 332
Cdd:MTH00011 319 ISMCTLSLGLIP 330
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 5-294 1.07e-46

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 160.82  E-value: 1.07e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282   5 LLLGTTITISSNHWVMAWAGLEINTLAVLPLISKSHHPRAVEAATKYFLVQATASTLVLFSSMTNAWCTGQWDITqlshp 84
Cdd:MTH00144  13 MVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFSM----- 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282  85 tscLIMTAAISMKLGLAPFHFWFPEVLQGSSLTTGLLLSTAMKFPPLTLLFMTSQSLNP-TLLTALAILSTAVGGWAGLN 163
Cdd:MTH00144  88 ---SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSALVGSIGGLN 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282 164 QTQIRKIMAFSSISHLGWMAVIIVYNPKLALLGFYLYAMMTAAVFLSLNSiKALKLSTLMTAWTKAPSLSAILLLTLLSL 243
Cdd:MTH00144 165 QTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWS-GDSGSMKDLGSLKPSYKTGLSIISLLLSL 243

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 430763282 244 AGLPPLTGFLPKWLIIQELTKQDMASTAVIISLLSLLSLFFYLRLAYCATI 294
Cdd:MTH00144 244 GGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFL 294
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 1-290 5.31e-39

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 140.19  E-value: 5.31e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282   1 FTTSLLLGTTITISSNHWVMAWAGLEINTLAVLPLISKSHHPRAVEAATKYFLVQATASTLVLFSSMTNawctgQWDITQ 80
Cdd:MTH00197   3 FLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLS-----FSNLYL 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282  81 LShpTSCLIMTAAISMKLGLAPFHFWFPEVLQGSSLTTGLLLSTAMKFPPLTLLfmTSQSLNPTLLTALAILSTAVGGWA 160
Cdd:MTH00197  78 SL--LSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLIL--AFNSSSFMGLLICSVLSSLIGGIG 153

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282 161 GLNQTQIRKIMAFSSISHLGWMAVIIVYNPKLALLGFYLYAMMTAAVFLSLNSIKALKLSTLMTAWTKAPSLSAILLLTL 240
Cdd:MTH00197 154 GMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSF 233

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|
gi 430763282 241 LSLAGLPPLTGFLPKWLIIQELTKQDMASTAVIISLLSLLSLFFYLRLAY 290
Cdd:MTH00197 234 LSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAY 283
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 5-288 1.27e-25

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 105.11  E-value: 1.27e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282   5 LLLGTTITISSNHWVMAWAGLEINTLAVLPLI-SKSHHPRAVEAATKYFLVQATASTLVLFS-------------SMTNA 70
Cdd:MTH00196   2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282  71 WCTGQWDITQLSHPTSCLIMTAAISMKLGLAPFHFWFPEVLQGSSLTTGLLLSTAMKFPPLTLLFmtSQSLNPTLLTALA 150
Cdd:MTH00196  82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILV--SIGLNVNILLIGG 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282 151 ILSTAVGGWAGLNQTQIRKIMAFSSISHLGWMAVIIVYNP----KLALLGFYLYAMMTAAVF---LSLNSIKAL--KLST 221
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSICVFsiiLALNVYKNLiiEFSG 239

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 430763282 222 LMtawTKAPSLSAILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMASTAVIISLLSLLSLFFYLRL 288
Cdd:MTH00196 240 LS---RRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 6-290 2.26e-25

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 105.97  E-value: 2.26e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282   6 LLGTTITISSNHWVMAWAGLEINTLAVLPLIS-KSHHPRAVEAATKYFLVQATASTLVLF-SSMTNAWcTGQWDITQLSH 83
Cdd:COG1007  112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSLNLAGIAA 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282  84 PTS------------CLIMTAAISMKLGLAPFHFWFPEVLQGSSLTTGLLLSTAMK---FPPLTLLFMTS-QSLNP---T 144
Cdd:COG1007  191 ALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaaFAALLRLLVEAfPGLAAdwqL 270

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282 145 LLTALAILSTAVGGWAGLNQTQIRKIMAFSSISHLGWMAVIIVYNPKLAL--LGFYL--YAMMTAAVF-----LSLNSIK 215
Cdd:COG1007  271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFavillLSRKGGE 350

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 430763282 216 ALKLSTLMTAWTKAPSLSAILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMASTAVIISLLSLLSLFFYLRLAY 290
Cdd:COG1007  351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 6-289 4.18e-24

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 102.33  E-value: 4.18e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282    6 LLGTTITISSNHWVMAWAGLEINTLAVLPLIS-KSHHPRAVEAATKYFLVQATASTLVLFSSMTNAWCTGQWDITQLSHP 84
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282   85 TSC------------LIMTAAISMKLGLAPFHFWFPEVLQGSSLTTGLLLSTAMK---FPPLTLLFMTSQS----LNPTL 145
Cdd:TIGR01770 192 LSNgmlnisllllgiVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaiFAVFLRLFLYILFgfseAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282  146 LTALAILSTAVGGWAGLNQTQIRKIMAFSSISHLGW--MAVIIVYNPKLALLGFYL--YAMMTAAVFLSLNSIKALK--- 218
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYilIGLLAGTLEGIKAVLFYIfiYALMSLGAFGVLSLLRSYKdew 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 430763282  219 ---LSTLMTAWTKAPSLSAILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMASTAVIISLLSLLSLFFYLRLA 289
Cdd:TIGR01770 352 ieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 15-260 1.00e-22

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 95.84  E-value: 1.00e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282   15 SNHWVMAWAGLEINTLAVLPLI-SKSHHPRAVEAATKYFLVQATASTLVLFSSMTNAWCTGQWDITQLSHPTSC------ 87
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGglnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282   88 -----LIMTAAISMKLGLAPFHFWFPEVLQGSSLTTGLLL-STAMKFPPL-----TLLFMTSQSLNPTLLTALAILSTAV 156
Cdd:pfam00361  81 llllfLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYglirrSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282  157 GGWAGLNQTQIRKIMAFSSISHLGWMAVII----VYNPKLALLGFYLYAMMTAAVFL-SLNSIKALKLSTLMTA----WT 227
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcAGSVIYRRVHTRNIRDygglAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 430763282  228 KAPSLSAILLLTLLSLAGLPPLTGFLPKWLIIQ 260
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
6-288 4.81e-22

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 96.43  E-value: 4.81e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282   6 LLGTTITISSNHWVMAWAGLEINTLAVLPLIS-KSHHPRAVEAATKYFLVQATASTLVLFSSMTNAWCTGQWDITQLSHP 84
Cdd:PRK05777 113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIAKA 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282  85 TS------------CLIMTAAISMKLGLAPFHFWFPEVLQGSSLTTGLLLSTAMK---FPPLT-LLFMTSQSLNPT---L 145
Cdd:PRK05777 193 LAdgsgnsllllfgLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaaFAVLLrLLVVAFGGLSEDwqqV 272

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282 146 LTALAILSTAVGGWAGLNQTQIRKIMAFSSISHLGWMAVIIVYNPKLAL--LGFYL--YAMMTAAVFLSLNSIK-----A 216
Cdd:PRK05777 273 LAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsaVLFYLlaYLFMTLGAFGVISLLRrkggeA 352

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 430763282 217 LKLSTLMTAWTKAPSLSAILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMASTAVIISLLSLLSLFFYLRL 288
Cdd:PRK05777 353 ESISDFAGLSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 5-288 5.33e-21

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 93.16  E-value: 5.33e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282   5 LLLGTTITISSNHWVMAWAGLEINTLAVLPLIS-KSHHPRAVEAATKYFLVQATASTLVLFSSMTNAWCTGQWDI----T 79
Cdd:MTH00199 106 VALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIqginS 185

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282  80 QLSHPTSCLIMTAAISMKLGLAPFHFWFPEVLQGSSLTTGLLLSTAMKFPPLTLLFMTSQSLNPTLLTAlaILSTAVGGW 159
Cdd:MTH00199 186 ILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLICA--VLSIIYGAI 263

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282 160 AGLNQTQIRKIMAFSSISHLGWM--AVIIVYNPKLALLGFYL--YAMMTAAVF---LSLNSIKALkLSTLMTAWTKAPSL 232
Cdd:MTH00199 264 GALNQTKIKRLLAYSGIGHMGFIlfGVAIGSFESIQASLIYMiiYVIMSICSFsiiLSLKLTKGL-IVEVSGLSRKNPVI 342

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 430763282 233 SAILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMASTAVIISLLSLLSLFFYLRL 288
Cdd:MTH00199 343 ALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 5-274 1.79e-15

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 76.72  E-value: 1.79e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282   5 LLLGTTITISSNHWVMAWAGLEINTLAVLPLISKSHHPRAVEAATKYFLVQATASTLVLFSSMTNAWCTGQWDITQLSH- 83
Cdd:COG0651  116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAAr 195

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282  84 ---------PTSCLIMTAAISMKLGLAPFHFWFPEVLQGSSLTTGLLLSTAM---------KFppLTLLFMTSQSLNP-T 144
Cdd:COG0651  196 laeldpgllLAAFALLLVGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLtkvgvyailRV--LTLLFGADPALFLgT 273

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282 145 LLTALAILSTAVGGWAGLNQTQIRKIMAFSSISHLGWMAVIIVYNPKLALLGFYLY----AMMTAAVFLSLNSI----KA 216
Cdd:COG0651  274 LLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHllnhALAKALLFLAAGAIeratGT 353

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 430763282 217 LKLSTLMTAWTKAPSLSAILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMASTAVII 274
Cdd:COG0651  354 RDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVL 411
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 7-182 1.97e-15

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 76.82  E-value: 1.97e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282   7 LGTTITISSNHWVMAWAGLEINTLAVLPLISKSHHPRAV---------EAATKYFLVQATASTLVLFSSMTNAWCTGQ-- 75
Cdd:MTH00198 199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNeg 278

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282  76 ------------WDITQLSHPTSCLIMTAAISMKLGLAPFHFWFPEVLQGSSLTTGLLLSTAMKFPPLTLLfmTSQSLNP 143
Cdd:MTH00198 279 mlgtilsatletTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILL--TSLVITS 356

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 430763282 144 TLLTALAILSTAVGGWAGLNQTQIRKIMAFSSISHLGWM 182
Cdd:MTH00198 357 KLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFI 395
ndhB CHL00049
NADH dehydrogenase subunit 2
 43-191 2.86e-11

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 64.25  E-value: 2.86e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282  43 RAVEAATKYFLVQATASTLVL--FSsmtnaWCTGQ-------WDI------TQLSHPTSCLI----MTAAISMKLGLAPF 103
Cdd:CHL00049 159 RSNEATMKYLLMGGASSSILVygFS-----WLYGLsggeielQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPF 233

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282 104 HFWFPEVLQGS-----------SLTTGLLLSTAMkfppLTLLFMTSQSLNPTLLTALAILSTAVGGWAGLNQTQIRKIMA 172
Cdd:CHL00049 234 HQWTPDVYEGSptpvvaflsvtSKVAASALATRI----FDIPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLA 309

                        170       180
                 ....*....|....*....|
gi 430763282 173 FSSISHLGWMAV-IIVYNPK 191
Cdd:CHL00049 310 YSSIGQIGYVIIgIIVGDSN 329
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 25-290 2.48e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 58.35  E-value: 2.48e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282  25 LEINTLAVLPLISKSHHPRAVEAATKYFLVQATASTLVLFS-SMTNAwCTGQWDITQLSH--PTSCLIMTA------AIS 95
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvGLLYG-VTGTLNMADLAGalAENPTVVTAfgfvllALA 213

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282  96 MKLGLAPFHFWFPEVLQG-SSLTTGLLLSTAMK----------FPPLTLLFMTSQSLNpTLLTALAILSTAVGGWAGLNQ 164
Cdd:PRK08375 214 LKAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKvavyaliriyFTVFGGDFRFALGLG-WLLAVLALLSMLVGSLAALGQ 292

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282 165 TQIRKIMAFSSISHLGWMAVIIVYNPKLALLG--FYL--YAMMTAAVFLSLNSI----KALKLSTLMTAWTKAPSLSAIL 236
Cdd:PRK08375 293 DDVKRVLAYSTVSQMGYILLGLALLTPLALAAglLHLlhHALMKGALFLAAGAIevtyGTRRLSELSGLGRRMPLTAAAF 372

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 430763282 237 LLTLLSLAGLPPLTGFLPKWLIIQELTKQDMASTAVIISLLSLLSLFFYLRLAY 290
Cdd:PRK08375 373 AVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWY 426
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
42-224 8.34e-09

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 56.60  E-value: 8.34e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282  42 PRAVEAATKYFLVQATASTLVLF-SSMTNAWCTGQwdiTQLSHPTSCLI-------------MTAAISMKLGLAPFHFWF 107
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGS---TQLSAIALALItspslglalalvfVIAGIAFKISAVPFHQWT 233

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282 108 PEVLQGSSLTTGLLLST-------AMKFPPLTLLFMTSQSLNPTLLTALAILSTAVGGWAGLNQTQIRKIMAFSSISHLG 180
Cdd:PRK02504 234 PDVYEGSPTPVVAFLSVgskaagfALAIRLLVTAFPSFDEQWKLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAG 313

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 430763282 181 WMAVIIVYNPKLALLGFYLYamMTAAVFLSLNSIKALKLSTLMT 224
Cdd:PRK02504 314 FVMIGLVAGTEAGYASMVFY--LLAYLFMNLGAFACVILFSLRT 355
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 25-258 2.54e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 55.10  E-value: 2.54e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282  25 LEINTLAVLPLIS-KSHHPRAVEAATKYFLVQATASTLVLFSSmtnAWCTGQWDITQLSHPTSCLIMT------------ 91
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGI---ALLYGQYGTLNMAYLAVKMSENptvvakialalf 226

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282  92 -AAISMKLGLAPFHFWFPEVLQG--SSLTTGLLLSTAMKFPPLTLLFMT--SQSLNPT----LLTALAILSTAVGGWAGL 162
Cdd:PRK08376 227 iAGLAMKSGAVPVHMWLPDAYPAapSSISAMLLVIKQAGLYALARVLFSiyGPAINLAtvgwVIIILGCLTMFVGVAMAV 306

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282 163 NQTQIRKIMAFSSISHLGWM------AVIIVYNPKLALLGF----------YLYAMMTAAVFLS----LNSIKALKLSTL 222
Cdd:PRK08376 307 VQKDVKRLLAYHSVSQIGYMllglgvGLAALGDPAMASYGEialaggiyhiVNHALYKALLFLTagavIYETGTRNLNEL 386

                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 430763282 223 MTAWTKAPSLSAILLLTLLSLAGLPPLTGFLPKWLI 258
Cdd:PRK08376 387 GGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 283-332 2.67e-08

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 49.56  E-value: 2.67e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 430763282  283 FFYLRLAYCATITLPPHTTNHMKQWHNNKPVN-LSVAILTTLSLVILPLSP 332
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNtLLLPTLTTLSILLLPLTP 51
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 42-260 1.56e-07

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 52.63  E-value: 1.56e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282   42 PRAVEAATKYFLVQATASTLVLFSSMTNAWCTG------QWDITQLSHPTSCLIMTA---AISMKLGLAPFHFWFPEV-- 110
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGgtfdllELLNLPLPFGVQTWLFLAffiAFAVKVPLFPLHTWLPDAhv 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282  111 ---LQGSSLTTGLLLSTA----MKFpPLTLLFMTSQSLNPtLLTALAILSTAVGGWAGLNQTQIRKIMAFSSISHLGWMA 183
Cdd:TIGR01972 232 eapTAGSVILAGVLLKMGtygfLRF-NLPLFPDASLYFAP-VLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVL 309

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282  184 VIIVYNPKLALLG--FYLYA--MMTAAVFLSLNSI----KALKLSTLMTAWTKAPSLSAILLLTLLSLAGLPPLTGFLPK 255
Cdd:TIGR01972 310 LGIFSFNELGISGavFQMIShgLITAALFLLVGVLyeraHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGE 389


                  ....*
gi 430763282  256 WLIIQ 260
Cdd:TIGR01972 390 FLILL 394
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 88-255 3.82e-07

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 51.85  E-value: 3.82e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282  88 LIMTAAISmKLGLAPFHFWFPEVLQGSSLTTGLLLSTAM---------KFPPLtllFMTSQSLNPTLLTaLAILSTAVGG 158
Cdd:PRK12644 208 LILVGALS-KSAIVPFHFWLPGAMAAPTPVSAYLHAAAMvkagiylvaRLAPG---FADVPVWRPTVLV-LGLATMLLGG 282

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282 159 WAGLNQTQIRKIMAFSSISHLGWMAVIIVY-NPKLALLGFYL---YAMMTAAVFLSLNSIKAL-------KLSTLmtaWT 227
Cdd:PRK12644 283 WRALRQHDLKLILAYGTVSQLGFLTVLVGIgTRDAALAGLAMllaHALFKAALFLVVGIIDHStgtrdirKLSGL---GR 359

                        170       180
                 ....*....|....*....|....*...
gi 430763282 228 KAPSLSAILLLTLLSLAGLPPLTGFLPK 255
Cdd:PRK12644 360 RQPVLAVVAALAAASMAGLPPLLGFVAK 387
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 5-194 1.22e-06

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 49.75  E-value: 1.22e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282   5 LLLGTTITISSNHWVMAWAGLEINTLAVLPLISKSHHPRAVEAATKYFLVQATA------STLVLFSSMTNAWCTGQWDI 78
Cdd:PRK08676 111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282  79 TQLSHPT----------SCLIMTAAISMKLGLAPFHFWFPEV-LQGSSLTTGLLLSTAMKFPPLTLLFMTS-------QS 140
Cdd:PRK08676 191 TELAAHAsllspsvlgaSFLFIFIGFLAKSGLVPFHTWLPAAyAKAPSVVSALLSGTVLNIGIYGILRLSAllrqsgaAE 270

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 430763282 141 LNPTLLTALAILSTAVGGWAGLNQTQIRKIMAFSSISHLGWMAVIIVYNPKLAL 194
Cdd:PRK08676 271 QFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLAL 324
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 41-180 1.59e-06

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 49.31  E-value: 1.59e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282  41 HPRAVEAATKYFLVQATASTLVLFSSMTNAWCTGQW--DI-----TQLSHPTSCLIMTA---AISMKLGLAPFHFWFPEV 110
Cdd:COG1008  156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIaelaaAPLPLTAQLLLFLAffiAFAVKVPMFPFHTWLPDA 235

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 430763282 111 LQ-----GSSLTTGLLLSTA----MKFPpLTLLFMTSQSLNPTLLtALAILSTAVGGWAGLNQTQIRKIMAFSSISHLG 180
Cdd:COG1008  236 HVeaptaGSVLLAGVLLKMGgyglLRFA-LPLFPEASAYFAPLLA-ALGVIGIIYGALVALAQTDLKRLIAYSSVSHMG 312
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 1-203 3.49e-05

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 45.31  E-value: 3.49e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282   1 FTTSLLLgttiTISSNHWVMAWAGLEINTLAVLPLISKSHHPRAVEAATKYF---------------LVQATASTLVLFS 65
Cdd:PRK06458 117 FLFTMLL----ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIiicsvgvafalfgtiLVYANAATVMGDG 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282  66 SMTNAWcTGQWDITQLSHPTsclIMTAAISM-------KLGLAPFHFWFPEVLQG-----SSLTTGLLLSTAMkFPPLTL 133
Cdd:PRK06458 193 EMAILW-TELLKHASLLDPT---LMKLAFVFlligfgtKVGLFPMHAWLPDAHSEapspvSALLSGVLLNVAL-YAVLRY 267

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 430763282 134 LFMTSQSLNP----TLLTALAILSTAVGGWAGLNQTQIRKIMAFSSISHLGWMAVIIVYNPKLALLGFYLYAMM 203
Cdd:PRK06458 268 YILIDAAIGSdfpgRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLN 341
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 93-211 4.24e-05

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 44.91  E-value: 4.24e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282  93 AISMKLGLAPFHFWFPEV-----LQGSSLTTGLLLSTA------MKFPPLTLlfmTSQSLNPTLLtALAILSTAVGGWAG 161
Cdd:MTH00226 239 AMAVKIPIFPFHIWLPKAhveapVAGSVLLAGILLKLGgyglvrLSWPILPL---GAQNLAPAVI-AMGIVGIVYGSFAT 314

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 430763282 162 LNQTQIRKIMAFSSISHLGWMAVIIVYNPKLALLGfYLYAMMTAAVFLSL 211
Cdd:MTH00226 315 CRQIDVKRLVAYSSVAHMGLVSITLVTHDIIGLTG-SIFIMLAHGIVSSL 363
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 26-274 4.74e-05

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 44.99  E-value: 4.74e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282  26 EINTLAVLPLISKSHHpRAVEAATKYFLVQATASTLVLFSSMTNAWCTGQWDIT-------QLSHPTSCLIMTAAIS--- 95
Cdd:PRK08668 128 EIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFAdisqgliNDTSTGFALIVFLFLLafg 206

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282  96 -MKLGLAPFHFWFPE-----------VLQGSSLTTG---LLLSTAMkFPPLTLL-----FMTSQSLNpTLLTALAILSTA 155
Cdd:PRK08668 207 vAKAGIFPLHVWAPDayseapqsfsaVLSGQLSKLGaygFLLVLYV-LPGTKLFsefgtYRGVPLFN-YILAWLGNISII 284

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282 156 VGGWAGLNQTQIRKIMAFSSISHLGWMAVIIVYNPKLALLG--FYL--YAMMTAAVFLSLNSI----KALKLSTLMTAWT 227
Cdd:PRK08668 285 VGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFAGglFHVfnHALFKGLFFLIFAAViyrtGTTKISEMGGLIE 364

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*..
gi 430763282 228 KAPSLSAILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMASTAVII 274
Cdd:PRK08668 365 KMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMA 411
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
84-260 2.60e-04

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 42.63  E-value: 2.60e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282  84 PTSCLIMTAAISMKLGLAPFhFWFPEVLQGSSLTTGLLLSTAMK-------FPPLTLLFMTSQSLNPTLLTALAILSTAV 156
Cdd:PRK12663 207 TTIALLFLLAFGMKAALFPF-MWLPAAYHTPNTEVAALFAALLTkvgiyalIRVFTLLFPQERELLHPLLATMAAITMVI 285

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282 157 GGWAGLNQTQIRKIMAFSSISHLGWMAVIIVYNPKLALLG--FYLYAMMT--AAVFLSLNSIKAL----KLSTLMTAWTK 228
Cdd:PRK12663 286 GALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGINGaiFYLVHDMVvkTALFLIAGSLVRLtgyrSLQYLGGLYRK 365

                        170       180       190
                 ....*....|....*....|....*....|..
gi 430763282 229 APSLSAILLLTLLSLAGLPPLTGFLPKWLIIQ 260
Cdd:PRK12663 366 EPLFGALFLILIFAIGGLPPFSGFWGKVLLVQ 397
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 25-259 2.70e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 42.41  E-value: 2.70e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282  25 LEINTLAVLPLISKSHHPRAVEAATKYFLVQATASTLVLFS-----SMTNAWCTGqwDITQLSHP--------TSCLIMT 91
Cdd:PRK12662 139 LEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGigflyAITGTLNMG--DMFLIIQDlptnraiqIGVLFIM 216

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282  92 AAISMKLGLAPFHFWFPEVLQGS-SLTTGLLLSTAMKFPPLTL-----------LFMTSQSLNpTLLTALAILSTAVGGW 159
Cdd:PRK12662 217 VGLFIKAALFPFHKWLIQAYSEApSFISVFFSGTSTKVMIYLIirivydvfkanFVFTTLPFN-NVFMILAALAIVFGSV 295

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282 160 AGLNQTQIRKIMAFSSISHLGWMAVIIVYNPKLALLGFYLY----AMMTAAVFLSLNSIK----ALKLSTLMTAWTKAPS 231
Cdd:PRK12662 296 LAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFMVSGSISyhfgTTKLEDCLNLWKSMPK 375

                        250       260
                 ....*....|....*....|....*...
gi 430763282 232 LSAILLLTLLSLAGLPPLTGFLPKWLII 259
Cdd:PRK12662 376 ITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 42-180 9.96e-04

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 40.57  E-value: 9.96e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282  42 PRAVEAATKYFLVQATASTLVLFSSMTNAWC----TGQWDITQL-----SHPTSCLIMTA---AISMKLGLAPFHFWFPE 109
Cdd:PRK05846 157 KNRIYAATKFFLYTLLGSLLMLVAIIYLVVVyynaTGTFDIADLlnlplPPGVQYWLFLAffiAFAVKMPMFPLHTWLPD 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282 110 VLQ-----GSSLTTGLLLSTA----MKFPpLTLLFMTSQSLNPtLLTALAILSTAVGGWAGLNQTQIRKIMAFSSISHLG 180
Cdd:PRK05846 237 AHVqaptaGSVLLAGILLKMGayglLRFS-LPLFPDASHEFAP-IIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMG 314
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
47-196 1.39e-03

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 40.45  E-value: 1.39e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282  47 AATKYFLVQATASTLVLFSSMTNAWCTGQWDI---TQLSH----PTSCLIMTA---AISMKLGLAPFHFWFPEV-LQGSS 115
Cdd:PRK06473 158 AATKFLLYTAISGILILVSFLGLVWLSGASSFdyePLRSHtlplSTQLLLLAPilvGFGIKIPLVPFHTWLPDAhVEAST 237

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282 116 LTTGLLLSTAMKFPP-------LTLLFMTSQSLNPTLLTaLAILSTAVGGWAGLNQTQIRKIMAFSSISHLGWMAVIIVY 188
Cdd:PRK06473 238 PVSVLLAGVLLKLGTygllrfgVGLFPEAWVYLAPWLAT-WAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILLAAAA 316


                 ....*...
gi 430763282 189 NPKLALLG 196
Cdd:PRK06473 317 ATPLSILA 324
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 103-214 1.78e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 39.89  E-value: 1.78e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282 103 FHFWFPEVLQGSSLTTGLLLSTAMKFPPLTLL--FMTSQSLNPTLLTA---LAILSTAVGGWAGLNQTQIRKIMAFSSIS 177
Cdd:MTH00066 226 LHPWLPAAMEGPTPVSALLHSSTMVVAGIFLLirFHPLLENNQTALTIclcLGALTTLFTAACALTQNDIKKIVAFSTSS 305

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 430763282 178 HLGWMAVIIVYN-PKLALLGFYLYAMMTAAVFLSLNSI 214
Cdd:MTH00066 306 QLGLMMVTIGLNqPQLAFFHICTHAFFKAMLFLCSGSI 343
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 88-214 2.15e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 39.94  E-value: 2.15e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282  88 LIMTAAISMKLGLapfHFWFPEVLQGSSLTTGLLLSTAM----------KFP-----PLTLLfmtsqslnptLLTALAIL 152
Cdd:MTH00032 232 LIGCIGKSAQLGL---HTWLPDAMEGPTPVSALIHAATMvtagvflmirSFPlfekaPLTLL----------IITIFGAL 298

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 430763282 153 STAVGGWAGLNQTQIRKIMAFSSISHLGWMAVIIVY--NPKLALLGFYLYAMMTAAVFLSLNSI 214
Cdd:MTH00032 299 TAFFAATVGLVQNDLKKVIAYSTCSQLGYMVLIIGIegSHNVGLFHLVNHAFFKALLFLSAGSV 362
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
 88-214 2.58e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 39.57  E-value: 2.58e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282  88 LIMTAAISMKLGLAPfhfWFPEVLQGSSLTTGLLLSTAMKFPPLTLLFMTSQSLNPTL-----------LTALAILSTAv 156
Cdd:MTH00208 243 LLAAAGKSAQFGLHP---WLPAAMEGPTPVSALLHSSTMVVAGVFLLIRTSPLISNSPwflslclilgsLTALFAASTA- 318

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 430763282 157 ggwagLNQTQIRKIMAFSSISHLGWMAVII-VYNPKLALLGFYLYAMMTAAVFLSLNSI 214
Cdd:MTH00208 319 -----ISQHDIKKIIAYSTTSQLGLMVVAIgLNQPNLALFHICTHAFFKAMLFLCSGSI 372
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-274 2.69e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 39.41  E-value: 2.69e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282   1 FTTSLLLGTTITISSNHWVMaWAGLEINTLAVLPLISKSHHPRAVEAATKYFLVQATASTLVLFSSMTNAWC-TGQWDIT 79
Cdd:PRK06589 122 FNLTILIGVLIALSSDLFTM-FVCYELLTISTAFLIGHTRNNISLSGGYKYLKILMISALLLFLPAVILIYTkTGNLDFV 200

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282  80 Q---LSHPTSCLIMTAAISM--KLGLAPFHFWFPEVLQG----SSLTTGLLLSTAMKFPPLTLLFMTSQSLNPTLLTA-- 148
Cdd:PRK06589 201 SgglFSKNQSIILLLMFIYGiaKTAIFPVHSWLPAAMVAhypvSALLHAVIVVKTGLFCIYKILLYIFGLSYLQRIFAef 280

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282 149 -----LAILSTAVGGWAGLNQTQIRKIMAFSSISHLGW--MAVIIVYNPKLALLGFYL--YAMMTAAVFLSLNSIKALK- 218
Cdd:PRK06589 281 nwlifIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLalLSAFILTPKALGAAILHLvsHSFAKICLFYSMGSIYSLKk 360

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 430763282 219 ---LSTLMTAWTKAPSLSAILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMASTAVII 274
Cdd:PRK06589 361 edqVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQPWLSIIV 419
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
 95-214 4.22e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 38.68  E-value: 4.22e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282  95 SMKLGLAPfhfWFPEVLQGSSLTTGLLLSTAM---------KFPPLTLLFMTSQSLnpTL-LTALAILSTAVggwAGLNQ 164
Cdd:MTH00108 224 SAQFGLHP---WLPSAMEGPTPVSALLHSSTMvvagvflliRFHPLMENNKTIQTL--TLcLGAITTLFTAI---CALTQ 295

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 430763282 165 TQIRKIMAFSSISHLGWMAVIIVYN-PKLALLGFYLYAMMTAAVFLSLNSI 214
Cdd:MTH00108 296 NDIKKIVAFSTSSQLGLMMVTIGINqPHLAFLHICTHAFFKAMLFMCSGSI 346
PRK12650 PRK12650
DUF4040 family protein;
88-255 4.65e-03

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 38.87  E-value: 4.65e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282  88 LIMTAAISmKLGLAPFHFWFPEVLQGSSLTTGLLLSTAMKFPPLTLL--FMTSQSLNPT---LLTALAILSTAVGGWAGL 162
Cdd:PRK12650 213 LIAVAAFT-KSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLlrFSPVFHDVAVwnwLLIIVGMITALMGAVFAV 291

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282 163 NQTQIRKIMAFSSISHLGWM-AVIIVYNP---KLALLGFYLYAMMTAAVFLSLNSIK----ALKLSTLMTAWTKAPSLSA 234
Cdd:PRK12650 292 QKTDLKKLTAYSTVSQLGWIvATIGVGTPfalTAAVVHTLAHALFKSSLFMLIGVVDhqagTRDIRRLGSLWRRMPFTFV 371

                        170       180
                 ....*....|....*....|.
gi 430763282 235 ILLLTLLSLAGLPPLTGFLPK 255
Cdd:PRK12650 372 SVTIAALSMAAVPPLFGFVSK 392
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 20-180 4.79e-03

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 38.47  E-value: 4.79e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282  20 MAWaglEINTLAVLPLISKSHHPRAVEAATKYFLVQATASTLVLFSSMTNAWCTGQ--WDITQL---SHPTSCLIMT--- 91
Cdd:PRK12561 114 LMW---ELELVPVYLLISIWGGQKRLYAATKFILYTALASIFILVAGLALALSGDTftFDLAELgakSYPLALELLLyag 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282  92 --AAISMKLGLAPFHFWFPEV-----LQGSSLTTGLLLstamKFPPLTLLFMTSQSLNPT------LLTALAILSTAVGG 158
Cdd:PRK12561 191 flIAFGVKLPIFPLHTWLPDAhgeasAPVSMILAGVLL----KMGGYALIRFNVQMLPDAhvyfapALAILGVVNIIYGA 266

                        170       180
                 ....*....|....*....|..
gi 430763282 159 WAGLNQTQIRKIMAFSSISHLG 180
Cdd:PRK12561 267 LNAFAQDNVKRRLAYSSVSHMG 288
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 40-255 7.68e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 38.27  E-value: 7.68e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282  40 HHPRAVEAATKYFLVQATASTLVLFSSMTNAWCTGQWDITQLSHPTS---------------CLIMTAAISmKLGLAPFH 104
Cdd:PRK12649 156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSElienikghplflitlILIFIGAAA-KSAQGPFY 234

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282 105 FWFPEVLQGSSLTTGLLLSTAMKFPPLTLLFMTSQSLNPT-----LLTALAILSTAVGGWAGLNQTQIRKIMAFSSISHL 179
Cdd:PRK12649 235 IWLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQL 314

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282 180 GWMAVIIVYNPK------LALLGFYL--YAMMTAAVFLsLNSIKALKLST-----LMTAWTKAPSLSAILLLTLLSLAGL 246
Cdd:PRK12649 315 AYLMTMYGYTTYhepglgVAAATFHLlnHATFKACLFL-VAGIVAHEAATrdirkLGGLRKEMPITFIVASIAALAMAGI 393


                 ....*....
gi 430763282 247 PPLTGFLPK 255
Cdd:PRK12649 394 PPLNGFLSK 402
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
47-196 8.53e-03

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 37.77  E-value: 8.53e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282  47 AATKYFLVQATASTLVLFSSMTNAWCTGQWD------ITQ-LSHPTSCLIMTAAI---SMKLGLAPFHFWFPEVLQGSSL 116
Cdd:PRK07363 158 ASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSfdydaiSTQnLSLNTQLILLTGLLlgfGIKIPLVPLHTWLPDAYTEASP 237

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 430763282 117 TTGLLLSTAM-KFPPLTL------LFMTSQSLNPTLLTALAILSTAVGGWAGLNQTQIRKIMAFSSISHLGWMAVIIVYN 189
Cdd:PRK07363 238 AVAILLGGVLaKLGTYGLlrfglqLFPQTWSLVAPGLAIIGTISVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAAG 317


                 ....*..
gi 430763282 190 PKLALLG 196
Cdd:PRK07363 318 TQLSLLG 324
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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