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Conserved domains on  [gi|459466248|gb|AGG68927|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Robsonius rabori]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
1-346 3.58e-173

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 484.71  E-value: 3.58e-173
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248   1 MNPQAMMIFILSIFLGTAIAISSSHWVVIWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQATASTLVLFSSMTNAWY 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248  81 TGQWDITQLTHPMSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTVMKLPPITLLFMTSPTLNPTLLTCMAIS 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 161 SAALGGWMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLNFYLYTLMTAAVFITLNSMKTLKLSTLMTSWTKTPSL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 241 SAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMTPMAMTISMLSLLGLFFYLRLAYCATITLPPHTTNHMKQWHINKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320
                        330       340
                 ....*....|....*....|....*.
gi 459466248 321 VNISIAILTTASITLLPVSPMILAMI 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
1-346 3.58e-173

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 484.71  E-value: 3.58e-173
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248   1 MNPQAMMIFILSIFLGTAIAISSSHWVVIWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQATASTLVLFSSMTNAWY 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248  81 TGQWDITQLTHPMSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTVMKLPPITLLFMTSPTLNPTLLTCMAIS 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 161 SAALGGWMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLNFYLYTLMTAAVFITLNSMKTLKLSTLMTSWTKTPSL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 241 SAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMTPMAMTISMLSLLGLFFYLRLAYCATITLPPHTTNHMKQWHINKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320
                        330       340
                 ....*....|....*....|....*.
gi 459466248 321 VNISIAILTTASITLLPVSPMILAMI 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
8-298 2.43e-35

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 134.09  E-value: 2.43e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248   8 IFILSIFLGTAIAISSSHWVVIWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQATASTLVLF-SSMTNAwYTGQWD 85
Cdd:COG1007  106 ALLLFATLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLN 184
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248  86 ITQLTHPMS------------CLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTVMKL----PPITLLFMTSPTL 149
Cdd:COG1007  185 LAGIAAALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGL 264
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 150 NP---TLLTCMAISSAALGGWMGLNQTQIRKILAFSSISHLGWMTI-IISYNPK-LTLLNFYL--YTLMTAAVFITLNSM 222
Cdd:COG1007  265 AAdwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLgLAAGTPLgVSAALFYLlaYLFMNLGAFAVILLL 344
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 223 -KTLKLSTLMTSW----TKTPSLSAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMTPMAMTISMLSLLGLFFYLRLA 297
Cdd:COG1007  345 sRKGGEAEEIEDLaglaRRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVV 424

                 .
gi 459466248 298 Y 298
Cdd:COG1007  425 K 425
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
8-297 4.41e-30

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 119.28  E-value: 4.41e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248    8 IFILSIFLGTAIAISSSHWVVIWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQATASTLVLFSSMTNAWYTGQWDI 86
Cdd:TIGR01770 106 ILLLFALLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNF 185
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248   87 TQLTHPMSCLILT------------SAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTVMKLP---PITLLFMT-----S 146
Cdd:TIGR01770 186 EDLLLFLSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYilfgfS 265
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248  147 PTLNPTLLTCmAISSAALGGWMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLN--FYL--YTLMTAAVFITLNSM 222
Cdd:TIGR01770 266 EAWQIFLAII-AFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLSLL 344
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248  223 KTLK------LSTLMTSWTKTPSLSAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMTPMAMTISMLSLLGLFFYLRL 296
Cdd:TIGR01770 345 RSYKdewieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV 424

                  .
gi 459466248  297 A 297
Cdd:TIGR01770 425 V 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
23-268 7.73e-28

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 110.10  E-value: 7.73e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248   23 SSHWVVIWTGLEINTLAILPLI-SKSHHPRAIEAATKYFLTQATASTLVLFSSMTNAWYTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248   91 HPMSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTVMKLPPITLLFMTSPTLNPT------LLTCMAISSAAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSspfiqqILLILAIISMLL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248  165 GGWMGLNQTQIRKILAFSSISHLGWMTIIIS----YNPKLTLLNFYLYTLMTAAVF-----ITLNSMKTLKLSTLMTSWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFlcagsVIYRRVHTRNIRDYGGLAK 240
                         250       260       270
                  ....*....|....*....|....*....|...
gi 459466248  236 KTPSLSAMLFLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
1-346 3.58e-173

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 484.71  E-value: 3.58e-173
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248   1 MNPQAMMIFILSIFLGTAIAISSSHWVVIWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQATASTLVLFSSMTNAWY 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248  81 TGQWDITQLTHPMSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTVMKLPPITLLFMTSPTLNPTLLTCMAIS 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 161 SAALGGWMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLNFYLYTLMTAAVFITLNSMKTLKLSTLMTSWTKTPSL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 241 SAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMTPMAMTISMLSLLGLFFYLRLAYCATITLPPHTTNHMKQWHINKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320
                        330       340
                 ....*....|....*....|....*.
gi 459466248 321 VNISIAILTTASITLLPVSPMILAMI 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
1-346 3.65e-146

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 416.13  E-value: 3.65e-146
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248   1 MNPQAMMIFILSIFLGTAIAISSSHWVVIWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQATASTLVLFSSMTNAWY 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248  81 TGQWDITQLTHPMSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTVMKLPPITLLFMTSPTlNPTLLTCMAIS 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 161 SAALGGWMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLNFYLYTLMTAAVFITLNSMKTLKLSTLMTSWTKTPSL 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 241 SAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMTPMAMTISMLSLLGLFFYLRLAYCATITLPPHTTNHMKQWHINKP 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319
                        330       340
                 ....*....|....*....|....*..
gi 459466248 321 -VNISIAILTTASITLLPVSPMILAMI 346
Cdd:MTH00135 320 qLTLPLAISTTATLMLLPLTPAILALL 346
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
1-346 1.91e-138

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 396.60  E-value: 1.91e-138
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248   1 MNPQAMMIFILSIFLGTAIAISSSHWVVIWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQATASTLVLFSSMTNAWY 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248  81 TGQWDITQLTHPMSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTVMKLPPITLLFMTSPTLNPTLLTCMAIS 160
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 161 SAALGGWMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLNFYLYTLMTAAVFITLNSMKTLKLSTLMTSWTKTPSL 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 241 SAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMTPMAMTISMLSLLGLFFYLRLAYCATITLPPHTTNHMKQWHINKP 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320
                        330       340
                 ....*....|....*....|....*.
gi 459466248 321 VNISIAILTTASITLLPVSPMILAMI 346
Cdd:MTH00070 321 TNNLLSLTIILSLMLLPITPTILNLF 346
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
1-345 5.08e-124

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 359.93  E-value: 5.08e-124
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248   1 MNPQAMMIFILSIFLGTAIAISSSHWVVIWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQATASTLVLFSSMTNAWY 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248  81 TGQWDITQLTHPMSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTVMKLPPITLLFMTSPTLNPTLLTCMAIS 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 161 SAALGGWMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLNFYLYTLMTAAVFITLNSMKTLKLSTLMTSWTKTPSL 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 241 SAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMTPMAMTISMLSLLGLFFYLRLAYCATITLPPhTTNHMK-QWHINK 319
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFP-STNNMKmKWQFEN 319
                        330       340
                 ....*....|....*....|....*..
gi 459466248 320 PVNIS-IAILTTASITLLPVSPMILAM 345
Cdd:MTH00105 320 TKPMTlLPTLIILSTMLLPLTPMLSIL 346
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
1-346 3.07e-100

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 299.58  E-value: 3.07e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248   1 MNPQAMMIFILSIFLGTAIAISSSHWVVIWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQATASTLVLFSSMTNAWY 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248  81 TGQWDITQLTHPMSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTVMKLPPITLLFMTSPTLNPTLLTCMAIS 160
Cdd:MTH00200  81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 161 SAALGGWMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLNFYLYTLMTAAVFITLNSMKTLKLSTLMTSWTKTPSL 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 241 SAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMTPMAMTISMLSLLGLFFYLRLAYCATITLPPHTTNHMKQWHINKP 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320
                        330       340
                 ....*....|....*....|....*.
gi 459466248 321 VNISIAILTTASITLLPVSPMILAMI 346
Cdd:MTH00200 321 SNLLVGLLLLLSILGLPLTPQLLFLF 346
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
1-336 2.41e-87

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 266.80  E-value: 2.41e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248   1 MNPQAMMIFILSIFLGTAIAISSSHWVVIWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQATASTLVLFSSMTNAWY 80
Cdd:MTH00041   1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248  81 TGQWDITQLTHPMSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTVMKLPPITLLFMTSPTLNPTLLTCMAIS 160
Cdd:MTH00041  81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 161 SAALGGWMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLNFYLYTLMTAAVFITLNSMKTLKLSTLMTSWTKTPSL 240
Cdd:MTH00041 161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 241 SAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMTPMAMTISMLSLLGLFFYLRLAYCATITLPPHTTNHMKQWHINKP 320
Cdd:MTH00041 241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGN 320
                        330
                 ....*....|....*.
gi 459466248 321 VNISIAILTTASITLL 336
Cdd:MTH00041 321 ITVYGVILSILSSISI 336
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
1-343 3.97e-59

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 193.50  E-value: 3.97e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248   1 MNPQAMMIFILSIFLGTAIAISSSHWVVIWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQATASTLVLFSSMTNAWy 80
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248  81 tgqwdITQLTHPMSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTVMKLPPITLLFMTsptLNPTLLTCMAIS 160
Cdd:MTH00160  81 -----NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIIL 152
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 161 SAALGGWMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLNFYLYTLMTAAVFITLNSMKTLKLSTLMTSWTKTPSL 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 241 SAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMTPMAMTISMLSLLGLFFYLRLAYCATITLPPHTTNHMKQwhINKP 320
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKK--KKNK 310
                        330       340
                 ....*....|....*....|...
gi 459466248 321 VNISIAILTTASITLLPVSPMIL 343
Cdd:MTH00160 311 FSLILNFLSFISLFGLILSSLLF 333
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
5-302 3.97e-51

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 172.76  E-value: 3.97e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248   5 AMMIFILSIFLGTAIAISSSHWVVIWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQATASTLVLFSSMTNAWYTGQW 84
Cdd:MTH00144   5 SNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248  85 DITqlthpmscLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTVMKLPPITLLFMTSPTLNPTLLTC-MAISSAA 163
Cdd:MTH00144  85 FSM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAYLLCvISVLSAL 156
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 164 LGGWMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLNFYLYTLMTAAVFITLNSMKTLKLSTLMTSWTKTPSLSAM 243
Cdd:MTH00144 157 VGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSLKPSYKTGLSI 236
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 459466248 244 LFLtLLSLAGLPPLTGFLPKWLIIQELTKQDMTPMAMTISMLSLLGLFFYLRLAYCATI 302
Cdd:MTH00144 237 ISL-LLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFL 294
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
6-310 2.22e-48

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 165.72  E-value: 2.22e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248   6 MMIFILSIFLGTAIAISSSHWVVIWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQATASTLVLFSSmtnawyTGQWD 85
Cdd:MTH00011   8 MFLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWS 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248  86 ITQLTHPMSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTVMKLPPITLLFMTSPTLNPTLLTCMAISSAALG 165
Cdd:MTH00011  82 FPSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAG 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 166 GWMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLNFYLYTLMTAAVFITLNSMKTLKLSTLMTSWTKTPSLSAMLF 245
Cdd:MTH00011 162 GLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLF 241
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 459466248 246 LTLLSLAGLPPLTGFLPKWLIIQELTKQDMTPMAMTISMLSLLGLFFYLRLAYcATITLPPHTTN 310
Cdd:MTH00011 242 IMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIF-NFMYLSPTFSS 305
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
7-298 1.21e-40

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 145.20  E-value: 1.21e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248   7 MIFILSIFLGTAIAISSSHWVVIWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQATASTLVLFSSMTNAwytgqwdI 86
Cdd:MTH00197   1 FLFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSF-------S 73
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248  87 TQLTHPMSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTVMKLPPITLLfmTSPTLNPTLLTCMAISSAALGG 166
Cdd:MTH00197  74 NLYLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLIL--AFNSSSFMGLLICSVLSSLIGG 151
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 167 WMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLNFYLYTLMTAAVFITLNSMKTLKLSTlMTSWTKTPSLSAMLF- 245
Cdd:MTH00197 152 IGGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQ-QYSNPESMSSNLVFLg 230
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 459466248 246 LTLLSLAGLPPLTGFLPKWLIIQELTKQDMTPMAMTISMLSLLGLFFYLRLAY 298
Cdd:MTH00197 231 LSFLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAY 283
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
8-298 2.43e-35

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 134.09  E-value: 2.43e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248   8 IFILSIFLGTAIAISSSHWVVIWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQATASTLVLF-SSMTNAwYTGQWD 85
Cdd:COG1007  106 ALLLFATLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLN 184
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248  86 ITQLTHPMS------------CLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTVMKL----PPITLLFMTSPTL 149
Cdd:COG1007  185 LAGIAAALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGL 264
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 150 NP---TLLTCMAISSAALGGWMGLNQTQIRKILAFSSISHLGWMTI-IISYNPK-LTLLNFYL--YTLMTAAVFITLNSM 222
Cdd:COG1007  265 AAdwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLgLAAGTPLgVSAALFYLlaYLFMNLGAFAVILLL 344
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 223 -KTLKLSTLMTSW----TKTPSLSAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMTPMAMTISMLSLLGLFFYLRLA 297
Cdd:COG1007  345 sRKGGEAEEIEDLaglaRRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVV 424

                 .
gi 459466248 298 Y 298
Cdd:COG1007  425 K 425
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
13-296 7.11e-31

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 119.75  E-value: 7.11e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248  13 IFLGTAIAISSSHWVVIWTGLEINTLAILPLI-SKSHHPRAIEAATKYFLTQATASTLVLFS-------------SMTNA 78
Cdd:MTH00196   2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248  79 WYTGQWDITQLTHPMSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTVMKLPPITLLFMTSPTLNptLLTCMA 158
Cdd:MTH00196  82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVN--ILLIGG 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 159 ISSAALGGWMGLNQTQIRKILAFSSISHLGWMTIIISYNP----KLTLLNFYLYTLMTAAVFITLNSMKTLK--LSTLMT 232
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSICVFSIILALNVYKnlIIEFSG 239
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 459466248 233 SWTKTPSLSAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMTPMAMTISMLSLLGLFFYLRL 296
Cdd:MTH00196 240 LSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
8-297 4.41e-30

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 119.28  E-value: 4.41e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248    8 IFILSIFLGTAIAISSSHWVVIWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQATASTLVLFSSMTNAWYTGQWDI 86
Cdd:TIGR01770 106 ILLLFALLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNF 185
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248   87 TQLTHPMSCLILT------------SAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTVMKLP---PITLLFMT-----S 146
Cdd:TIGR01770 186 EDLLLFLSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYilfgfS 265
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248  147 PTLNPTLLTCmAISSAALGGWMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLN--FYL--YTLMTAAVFITLNSM 222
Cdd:TIGR01770 266 EAWQIFLAII-AFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLSLL 344
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248  223 KTLK------LSTLMTSWTKTPSLSAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMTPMAMTISMLSLLGLFFYLRL 296
Cdd:TIGR01770 345 RSYKdewieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV 424

                  .
gi 459466248  297 A 297
Cdd:TIGR01770 425 V 425
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
9-296 1.49e-29

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 118.00  E-value: 1.49e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248   9 FILSIF--LGTAIAISSSHWVVIWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQATASTLVLFSSMTNAWYTGQWD 85
Cdd:PRK05777 106 YLLVLFalLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLS 185
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248  86 ITQLTHP------------MSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTVMKL----PPITLLFMTSPTL 149
Cdd:PRK05777 186 FAGIAKAladgsgnsllllFGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaVLLRLLVVAFGGL 265
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 150 NPT---LLTCMAISSAALGGWMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTL--LNFYL--YTLMTAAVFITLNSM 222
Cdd:PRK05777 266 SEDwqqVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsaVLFYLlaYLFMTLGAFGVISLL 345
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 459466248 223 KT-LKLSTLMTSWT----KTPSLSAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMTPMAMTISMLSLLGLFFYLRL 296
Cdd:PRK05777 346 RRkGGEAESISDFAglskRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
23-268 7.73e-28

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 110.10  E-value: 7.73e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248   23 SSHWVVIWTGLEINTLAILPLI-SKSHHPRAIEAATKYFLTQATASTLVLFSSMTNAWYTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248   91 HPMSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTVMKLPPITLLFMTSPTLNPT------LLTCMAISSAAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSspfiqqILLILAIISMLL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248  165 GGWMGLNQTQIRKILAFSSISHLGWMTIIIS----YNPKLTLLNFYLYTLMTAAVF-----ITLNSMKTLKLSTLMTSWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFlcagsVIYRRVHTRNIRDYGGLAK 240
                         250       260       270
                  ....*....|....*....|....*....|...
gi 459466248  236 KTPSLSAMLFLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
8-267 3.93e-26

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 108.18  E-value: 3.93e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248   8 IFILSIFLGTAIAISSSHWVVIWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQATASTLVLFSSMTNAWYTGQWDI 86
Cdd:MTH00199 101 ILILIVALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSI 180
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248  87 ----TQLTHPMSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTVMKLPPITLLFMTSPTLNPTLLTcmAISSA 162
Cdd:MTH00199 181 qginSILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSI 258
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 163 ALGGWMGLNQTQIRKILAFSSISHLGWMTIIISYNP----KLTLLNFYLYTLMTAAVFITLNSMKTLK--LSTLMTSWTK 236
Cdd:MTH00199 259 IYGAIGALNQTKIKRLLAYSGIGHMGFILFGVAIGSfesiQASLIYMIIYVIMSICSFSIILSLKLTKglIVEVSGLSRK 338
                        250       260       270
                 ....*....|....*....|....*....|.
gi 459466248 237 TPSLSAMLFLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00199 339 NPVIALTLALTFLSIAGIPPLAGFLSKWLIL 369
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
9-296 1.12e-21

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 95.21  E-value: 1.12e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248   9 FILSIFLGTAIAISSSHWVVIWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQATASTLVLFSSMTNAWYTGQWDITQ 88
Cdd:COG0651  112 LFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMAD 191
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248  89 LTHPMS----------CLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTVM-KLPP------ITLLFMTSPTLNP 151
Cdd:COG0651  192 LAARLAeldpglllaaFALLLVGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLtKVGVyailrvLTLLFGADPALFL 271
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 152 -TLLTCMAISSAALGGWMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLNFYLY----TLMTAAVFIT----LNSM 222
Cdd:COG0651  272 gTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHllnhALAKALLFLAagaiERAT 351
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 459466248 223 KTLKLSTLMTSWTKTPSLSAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMTPMAMTISMLSLLGLFFYLRL 296
Cdd:COG0651  352 GTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
3-267 8.21e-21

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 93.38  E-value: 8.21e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248   3 PQAMMIFILSIFLGTAIAISSSHWVVIWTGLEINTLAILPLISKSHHPRAI---------EAATKYFLTQATASTLVLFS 73
Cdd:MTH00198 187 PRSGFALVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFG 266
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248  74 SMTNAWYTGQ--------------WDITQLTHPMSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTVMKLPPI 139
Cdd:MTH00198 267 CALYFGFTGNegmlgtilsatletTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVY 346
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 140 TLLfmTSPTLNPTLLTCMAISSAALGGWMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLNFYLY-------TLMT 212
Cdd:MTH00198 347 ILL--TSLVITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYavtylvsALAS 424
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 459466248 213 AAVFITLNSMKTL------------------KLSTLMTSWTKTPSLSAMLFLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00198 425 FTVICTLEEFGTRtptsrqrdgsfgnynlvrRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFIL 497
ndhB CHL00049
NADH dehydrogenase subunit 2
7-342 1.08e-18

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 86.60  E-value: 1.08e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248   7 MIFILSIFLGTAIAISSSHWVVIWTGLEINTLAILPLISKSHHP-RAIEAATKYFLTQATASTLVLFS-SMTNAWYTGQW 84
Cdd:CHL00049 114 LLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTKKDvRSNEATMKYLLMGGASSSILVYGfSWLYGLSGGEI 193
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248  85 DI---------TQLTHPMSCLI----LTSAIAMKLGLVPFHFWFPEVLQGSPL-----------TTGLILSTVMklppIT 140
Cdd:CHL00049 194 ELqeivnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTPDVYEGSPTpvvaflsvtskVAASALATRI----FD 269
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 141 LLFMTSPTLNPTLLTCMAISSAALGGWMGLNQTQIRKILAFSSISHLGWMTI-IISYNPK------LTLLNFYLYTLMTA 213
Cdd:CHL00049 270 IPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIgIIVGDSNdgyasmITYMLFYIFMNLGT 349
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 214 AVFITLNSMK--TLKLSTLMTSWTKTPSLSAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMTPMAMTISMLSLLGLF 291
Cdd:CHL00049 350 FACIVLFGLRtgTDNIRDYAGLYTKDPFLALSLALCLLSLGGIPPLAGFFGKLYLFWCGWQAGLYFLVSIGLLTSVISIY 429
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 459466248 292 FYLRLAYCATITLPPHTTNHMKQWHI-----NKPVNISIAILTTASITL-LPVSPMI 342
Cdd:CHL00049 430 YYLKIIKLLMTGRNQEITPYVRNYRRsplrsNNSIELSMIVCVIASTIPgISMNPII 486
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-263 2.35e-14

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 73.93  E-value: 2.35e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248  50 PRAIEAATKYFLTQATASTLVLF-SSMTNAWYTGQwdiTQLTHPMSCLI-------------LTSAIAMKLGLVPFHFWF 115
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGS---TQLSAIALALItspslglalalvfVIAGIAFKISAVPFHQWT 233
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 116 PEVLQGSPLTTGLILSTVMKLP----PITLLFMTSPTLNP---TLLTCMAISSAALGGWMGLNQTQIRKILAFSSISHLG 188
Cdd:PRK02504 234 PDVYEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPSFDEqwkLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAG 313
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 189 WMTI--IISYNPKLTLLNFYL--YTLMTAAVF--ITLNSMKT--LKLSTLMTSWTKTPSLSAMLFLTLLSLAGLPPLTGF 260
Cdd:PRK02504 314 FVMIglVAGTEAGYASMVFYLlaYLFMNLGAFacVILFSLRTgtDQISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGF 393

                 ...
gi 459466248 261 LPK 263
Cdd:PRK02504 394 FGK 396
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
49-267 3.38e-12

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 67.03  E-value: 3.38e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248  49 HPRAIEAATKYFLTQATASTLVLFSSMTNAWYTGQW--DITQLTH-----PMSCLILTS---AIAMKLGLVPFHFWFPEV 118
Cdd:COG1008  156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAaplplTAQLLLFLAffiAFAVKVPMFPFHTWLPDA 235
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 119 LQGSPLTTGLILSTVM-KLP-------PITLLFMTSPTLNPTLLTcMAISSAALGGWMGLNQTQIRKILAFSSISHLGWM 190
Cdd:COG1008  236 HVEAPTAGSVLLAGVLlKMGgygllrfALPLFPEASAYFAPLLAA-LGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFV 314
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 191 TI-IISYNPK------LTLLNFylyTLMTAAVFITL----NSMKTLKLSTLMTSWTKTPSLSAMLFLTLLSLAGLPPLTG 259
Cdd:COG1008  315 LLgIFALNPLglqgavLQMVSH---GLITAALFLLVgvlyDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSG 391

                 ....*...
gi 459466248 260 FLPKWLII 267
Cdd:COG1008  392 FVGEFLVL 399
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
33-298 2.16e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 64.52  E-value: 2.16e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248  33 LEINTLAILPLISKSHHPRAIEAATKYFLTQATASTLVLFS-----SMTNawYTGQWDITQLTHPMSCL-----ILTSAI 102
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvgllyGVTG--TLNMADLAGALAENPTVvtafgFVLLAL 212
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 103 AMKLGLVPFHFWFPEVLQG-SPLTTGLILSTVMKLPP----------ITLLFMTSPTLNPTLLTCMAISSAAlGGWMGLN 171
Cdd:PRK08375 213 ALKAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAVyaliriyftvFGGDFRFALGLGWLLAVLALLSMLV-GSLAALG 291
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 172 QTQIRKILAFSSISHLGWMTIIISYNPKLTLLNFYLYT-----------LMTAAVFITLNSMKTLKLSTLMTswtKTPSL 240
Cdd:PRK08375 292 QDDVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLlhhalmkgalfLAAGAIEVTYGTRRLSELSGLGR---RMPLT 368
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 459466248 241 SAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMTPMAMTISMLSLLGLFFYLRLAY 298
Cdd:PRK08375 369 AAAFAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWY 426
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
2-298 2.80e-11

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 64.63  E-value: 2.80e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248   2 NPQAMMIFILSIFLGTAIAISSSHWVVIWTGLEINTLAILPLISKSHHpRAIEAATKYFLTQATASTLVLFSSMTNAWYT 81
Cdd:PRK08668  96 NDAYFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKT 174
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248  82 GQWDITQLTHPMS-----------CLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTV----------------- 133
Cdd:PRK08668 175 GTFDFADISQGLIndtstgfalivFLFLLAFGVAKAGIFPLHVWAPDAYSEAPQSFSAVLSGQlsklgaygfllvlyvlp 254
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 134 -MKLPPITLLFMTSPTLNPTLLTCMAISsAALGGWMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLT----LLNFYLY 208
Cdd:PRK08668 255 gTKLFSEFGTYRGVPLFNYILAWLGNIS-IIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGfaggLFHVFNH 333
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 209 TLMTAAVFITLNSM----KTLKLSTLMTSWTKTPSLSAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMTPMAMTISM 284
Cdd:PRK08668 334 ALFKGLFFLIFAAViyrtGTTKISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMAFF 413
                        330
                 ....*....|....
gi 459466248 285 LSLLGLFFYLRLAY 298
Cdd:PRK08668 414 GSIGSFLYVFRPLA 427
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
33-333 5.94e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 60.50  E-value: 5.94e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248  33 LEINTLAILPLIS-KSHHPRAIEAATKYFLTQATASTLVLFS---------SMTNAWYTGQWDITQLTHPMSCL-ILTSA 101
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGiallygqygTLNMAYLAVKMSENPTVVAKIALaLFIAG 229
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 102 IAMKLGLVPFHFWFPEVLQGSP--LTTGLILSTVMKLPPITLLFMT--SPTLNPT----LLTCMAISSAALGGWMGLNQT 173
Cdd:PRK08376 230 LAMKSGAVPVHMWLPDAYPAAPssISAMLLVIKQAGLYALARVLFSiyGPAINLAtvgwVIIILGCLTMFVGVAMAVVQK 309
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 174 QIRKILAFSSISHLGWMTI-----IISYNPklTLLNFYLYTLMTAAVFITLNS--MKTL------------------KLS 228
Cdd:PRK08376 310 DVKRLLAYHSVSQIGYMLLglgvgLAALGD--PAMASYGEIALAGGIYHIVNHalYKALlfltagaviyetgtrnlnELG 387
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 229 TLMTSWTKTpslSAMLFLTLLSLAGLPPLTGFLPKWLIIQelTKQDMTPMAMTISML-SLLGLFFYLRLAYcaTITLPPH 307
Cdd:PRK08376 388 GLARTMPKT---TIAFLIGAAAIVGLPPFNGFASKWLIYE--SSALFNPILGVIAMIgSVLTLASFVKVFH--TAFFGPP 460
                        330       340
                 ....*....|....*....|....*.
gi 459466248 308 TTNHMKQWHINKPVNISIAILTTASI 333
Cdd:PRK08376 461 SEKVMNVKEPPKPMLVPMLILAIAII 486
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
50-268 8.37e-10

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 59.95  E-value: 8.37e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248   50 PRAIEAATKYFLTQATASTLVLFSSMTNAWYTGQ-WDITQL-THPMSC-------LILTSAIAMKLGLVPFHFWFPEVLQ 120
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGtFDLLELlNLPLPFgvqtwlfLAFFIAFAVKVPLFPLHTWLPDAHV 231
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248  121 GSPLTTGLILSTVM-KLPPITLLFMTSPtLNP-------TLLTCMAISSAALGGWMGLNQTQIRKILAFSSISHLGWMTI 192
Cdd:TIGR01972 232 EAPTAGSVILAGVLlKMGTYGFLRFNLP-LFPdaslyfaPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLL 310
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248  193 IISYNPKLTLLNFYLYT----LMTAAVFITL----NSMKTLKLSTLMTSWTKTPSLSAMLFLTLLSLAGLPPLTGFLPKW 264
Cdd:TIGR01972 311 GIFSFNELGISGAVFQMishgLITAALFLLVgvlyERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEF 390

                  ....
gi 459466248  265 LIIQ 268
Cdd:TIGR01972 391 LILL 394
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
48-298 6.88e-09

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 57.08  E-value: 6.88e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248  48 HHPRAIEAATKYFLTQATASTLVLFSSMTNAWYTGQWDITQLTH------------PMSCLILTSAIAmKLGLVPFHFWF 115
Cdd:COG1009  156 EKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELLAaaptilssplltLILLLLLLGAFG-KSAQFPLHFWL 234
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 116 PEVLQG----SPL-------TTGLILstVMKLPPItllFMTSPTLNPTLLTCMAISsAALGGWMGLNQTQIRKILAFSSI 184
Cdd:COG1009  235 PDAMEGptpvSALlhaatmvKAGVYL--LARLSPL---FALSPVWLTVVAIIGAIT-ALFAALIALAQTDIKRVLAYSTV 308
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 185 SHLGWMTIIISynpkLTLLNFYLYTLMTAAVF---------ITLNSMKTL---KLSTLmtsWTKTPSLSAMLFLTLLSLA 252
Cdd:COG1009  309 SQLGYMFLALG----VGAYVAALFHLLTHAFFkallflgagSVIHATGTRdirKMGGL---RKKMPITAITFLIGALSLA 381
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*...
gi 459466248 253 GLPPLTGFLPKWLIIQELTKQDMTPMAMTISML--SLLGLFFYLRLAY 298
Cdd:COG1009  382 GIPPFAGFFSKEAILEAALEAGGLGPLLLAVALlgAFLTAFYSFRLFF 429
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
96-263 1.54e-08

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 56.09  E-value: 1.54e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248  96 LILTSAIAmKLGLVPFHFWFPEVLQGSPLTTGLILSTVMKLPPITLL------FMTSPTLNPTLLTcMAISSAALGGWMG 169
Cdd:PRK12644 208 LILVGALS-KSAIVPFHFWLPGAMAAPTPVSAYLHAAAMVKAGIYLVarlapgFADVPVWRPTVLV-LGLATMLLGGWRA 285
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 170 LNQTQIRKILAFSSISHLGWMTIIISYNPK------LTLLnfYLYTLMTAAVFITL----NSMKTLKLSTLMTSWTKTPS 239
Cdd:PRK12644 286 LRQHDLKLILAYGTVSQLGFLTVLVGIGTRdaalagLAML--LAHALFKAALFLVVgiidHSTGTRDIRKLSGLGRRQPV 363
                        170       180
                 ....*....|....*....|....
gi 459466248 240 LSAMLFLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12644 364 LAVVAALAAASMAGLPPLLGFVAK 387
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
29-267 4.84e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 54.35  E-value: 4.84e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248  29 IWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQATASTLVLFS-----SMTNAWYTGqwDITQLTHPM--------SC 95
Cdd:PRK12662 135 IYVFLEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGigflyAITGTLNMG--DMFLIIQDLptnraiqiGV 212
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248  96 LILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTVMKLPPITL------------LFMTSPTLNpTLLTCMAISSAA 163
Cdd:PRK12662 213 LFIMVGLFIKAALFPFHKWLIQAYSEAPSFISVFFSGTSTKVMIYLiirivydvfkanFVFTTLPFN-NVFMILAALAIV 291
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 164 LGGWMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLNFYLY----TLMTAAVFITLNSMK----TLKLSTLMTSWT 235
Cdd:PRK12662 292 FGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFMVSGSISyhfgTTKLEDCLNLWK 371
                        250       260       270
                 ....*....|....*....|....*....|..
gi 459466248 236 KTPSLSAMLFLTLLSLAGLPPLTGFLPKWLII 267
Cdd:PRK12662 372 SMPKITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
53-268 1.05e-07

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 53.42  E-value: 1.05e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248  53 IEAATKYFLTQATASTLVL---------FSSMTNAWYTGQWDITQLTHPMSCL--ILTSAIAMKLGLVPFhFWFPEVLQG 121
Cdd:PRK12663 157 LRGAIKYVVLNLIGSWLFLlgigllygtFGTLNMAHIAMRLNDMGDTATLTTIalLFLLAFGMKAALFPF-MWLPAAYHT 235
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 122 SPLTTGLILSTVMKLPPI-------TLLFMTSPTLNPTLLTCMAISSAALGGWMGLNQTQIRKILAFSSISHLGWMTIII 194
Cdd:PRK12663 236 PNTEVAALFAALLTKVGIyalirvfTLLFPQERELLHPLLATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLGL 315
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 195 SYNPKLTLLN--FYLYTLMT--AAVFITLNSMKTL----KLSTLMTSWTKTPSLSAMLFLTLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK12663 316 ALGTPAGINGaiFYLVHDMVvkTALFLIAGSLVRLtgyrSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLL 395

                 ..
gi 459466248 267 IQ 268
Cdd:PRK12663 396 VQ 397
PRK12650 PRK12650
DUF4040 family protein;
98-263 1.89e-07

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 52.74  E-value: 1.89e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248  98 LTSAIAM--------KLGLVPFHFWFPEVLQG-SPLTTGLILSTVMKlPPITLLFMTSPTL--NPT---LLTCMAISSAA 163
Cdd:PRK12650 206 LTTVVAVliavaaftKSAQFPFHFWLPEAMAAiTPVSAFLHAAAVVK-AGIYLLLRFSPVFhdVAVwnwLLIIVGMITAL 284
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 164 LGGWMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLNFYLYT----LMTAAVFITLNSMK----TLKLSTLMTSWT 235
Cdd:PRK12650 285 MGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTlahaLFKSSLFMLIGVVDhqagTRDIRRLGSLWR 364
                        170       180
                 ....*....|....*....|....*...
gi 459466248 236 KTPSLSAMLFLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12650 365 RMPFTFVSVTIAALSMAAVPPLFGFVSK 392
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
95-316 6.90e-07

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 50.85  E-value: 6.90e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248  95 CLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTVMKLPPITLLFMTSPTLNPTLLTCMAIS-----SAALGGWMG 169
Cdd:MTH00020 213 CLFLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSSPLFEQAPLALIIVTivgslTVFFAATVG 292
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 170 LNQTQIRKILAFSSISHLGWMTIIISynpkLTLLNFYLYTLMTAAVFITL-------------NSMKTLKLSTLMTSwtk 236
Cdd:MTH00020 293 LVQNDLKKVIAYSTCSQLGYMVVACG----LSHYSISLFHLMNHAFFKALlflsagsvihalsDEQDMRKMGGLISF--- 365
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 237 TPSLSAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMTPMAMTISMLS-LLGLFFYLRLAYCATITLPPHTTNHMKQW 315
Cdd:MTH00020 366 LPLTYIFFLIGSLSLMGFPYLTGFYSKDLILELAFGQYYLIFAYWLGCFSaLLTAFYSIRLIYLTFLSNTNLKKAVFFHL 445

                 .
gi 459466248 316 H 316
Cdd:MTH00020 446 H 446
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
92-268 1.10e-06

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 50.34  E-value: 1.10e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248  92 PMSCLILTSAI--AMKLGLvpfHFWFPEVLQGSPLTTGLILSTVMKLPPITLLFMTSPTLNPTLLTCMAIS-----SAAL 164
Cdd:MTH00032 226 IIGILLLIGCIgkSAQLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSFPLFEKAPLTLLIITifgalTAFF 302
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 165 GGWMGLNQTQIRKILAFSSISHLGWMTIIISY--NPKLTLLNFYLYTLMTAAVFI---------TLNSMKTLKLSTLMTS 233
Cdd:MTH00032 303 AATVGLVQNDLKKVIAYSTCSQLGYMVLIIGIegSHNVGLFHLVNHAFFKALLFLsagsvihstTVDEQDMRKMGGLIHS 382
                        170       180       190
                 ....*....|....*....|....*....|....*
gi 459466248 234 wtkTPSLSAMLFLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:MTH00032 383 ---IPFTYTMMLIGSFSIMGLPYLTGFYSKDLILE 414
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
109-285 1.76e-06

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 49.53  E-value: 1.76e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 109 VPFHFWFPEVLQG-SPLTTGLILSTVMKLPpITLLFMTSPTLNPTLL--TCMAISSAA---LGGWMGLNQTQIRKILAFS 182
Cdd:PRK12647 212 FPFHFWLPNAMEApTPVSAYLHSATMVKAG-IYLLARLNPVLGGTPLwqTILPLFGGLtmlTGALLAVRQTDLKLILAYS 290
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 183 SISHLGWMTIIISYNPKLTLLNFYLY----TLMTAAVFITLNSMK----TLKLSTLMTSWTKTPSLSAMLFLTLLSLAGL 254
Cdd:PRK12647 291 TVSALGTLVMLLGLGSELAIKAAVLFlvahSLYKGALFMVAGIIDhetgTRDITKLGGLRRAMPITAAAALLAALSMAGL 370
                        170       180       190
                 ....*....|....*....|....*....|.
gi 459466248 255 PPLTGFLPKWLIIQELTKQDMTPMAMTISML 285
Cdd:PRK12647 371 PPLFGFLAKELIYEALLEAPLWSLILTVAAV 401
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
103-296 1.85e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 49.56  E-value: 1.85e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 103 AMKLGLVPFHFWFPEVLQGSP---------LTTGLILSTVMKLppITLLFMTSPTLNPTLLTCMAISSAALGGWMGLNQT 173
Cdd:PRK07691 220 ATKAGLFPLYFWLPGSYYAPPiaiaalfgaLLTKVGVYAIART--FTLFFSHDTSFTHYLILILALLTIIFGVIGAVAYF 297
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 174 QIRKILAFSSISHLGWMTIIISYNPKLTLLNFYLYT----LMTAAVFITLNSMKTL-------KLSTLMTSWtktPSLSA 242
Cdd:PRK07691 298 DIKKIIIYNIMIAVGVILVGVAMMTESGMIGAIYYLihdmIVKAALFLLIGIMIKItgttdlkKMGGLIKRY---PVLGW 374
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 459466248 243 MLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMTPMAMTISMLSLLGLFFYLRL 296
Cdd:PRK07691 375 MFFIAALSLAGIPPLSGFYGKFFIVEGTFEAGFYVSGIIVLLSSLLVLYSVIKI 428
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
291-340 2.33e-06

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 44.17  E-value: 2.33e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 459466248  291 FFYLRLAYCATITLPPHTTNHMKQWHINKPVNI-SIAILTTASITLLPVSP 340
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTlLLPTLTTLSILLLPLTP 51
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
20-292 3.00e-06

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 48.77  E-value: 3.00e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248  20 AISSSHWVVIWTGLEINTLAILPLISKSHHPRAIEAATKYFL------TQATASTLVLFSSMTnawytgqwdiTQLTHPM 93
Cdd:PRK06458 124 ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIicsvgvAFALFGTILVYANAA----------TVMGDGE 193
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248  94 SCLILTSAIAM----------------------KLGLVPFHFWFPEVLQGSPLTTGLILSTVMkLPPITLLFMTSPTLN- 150
Cdd:PRK06458 194 MAILWTELLKHaslldptlmklafvflligfgtKVGLFPMHAWLPDAHSEAPSPVSALLSGVL-LNVALYAVLRYYILId 272
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 151 --------PTLLTCMAISSAALGGWMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLNFYLYTLM----TAAVFIT 218
Cdd:PRK06458 273 aaigsdfpGRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLNhsltKSAIFFA 352
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 459466248 219 ----LNSMKTLKLSTLMTSWTKTPSLSAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDmtPMAMTISMLSLLGLFF 292
Cdd:PRK06458 353 sgnvLQKYGTRDINVIRGLLKVSPLTGWGLMLGALAIAGMPPFGVFISEFLILTAGLARG--PLLIAILLLLLLTLAF 428
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
6-291 3.77e-06

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 48.57  E-value: 3.77e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248   6 MMIFILSIfLGTAIAISSSHWVVIWtglEINTLAILPLISKSHHPRAIEAATKYFLTQATASTLVLFSSMTNAWY-TGQW 84
Cdd:PRK08667 117 TALFILSM-LGVVASANTFSFLFFW---EIMALSSFFLVMNDYQEEETQRAGIFYFVMTQLSTVFLMLGIIVLFIqTGSF 192
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248  85 DITQLTHP-----MSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTVM-KLPPITLLFMTSPTLNPTLLTCMA 158
Cdd:PRK08667 193 ELSPLGASagilsLVFLLLFLGFGIKAGIIPFHKWLPYAHPASPSNVSALMSGVMlKVAVYGLVRFLMDVLSPELWWGVL 272
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 159 I-----SSAALGGWMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLNFYLYTLMT--AAVFITLNS--MKTLKL-- 227
Cdd:PRK08667 273 IllagsISALLGVIYALKEHDLKGLLAYSSIENIGIILMGIGLYVIFGVYGLDTLALLAlgGALFHSLNHalFKSLLFlt 352
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 459466248 228 --STLMTSWTKT-----------PSLSAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQ-DMTPMAMTISMLSLLGLF 291
Cdd:PRK08667 353 agSVVHATGTRNiekmgglvklmPYTSALFLVGAVSIAALPPFNGFASELLLYESFFQSfSVADPLIKILLFSVLAIF 430
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
55-268 6.67e-06

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 47.78  E-value: 6.67e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248  55 AATKYFLTQATASTLVLFSSMTNAWYTGQWD------ITQLTHPMSCLILTSAI----AMKLGLVPFHFWFPEV-LQGSP 123
Cdd:PRK07363 158 ASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSfdydaiSTQNLSLNTQLILLTGLllgfGIKIPLVPLHTWLPDAyTEASP 237
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 124 LTTGLILSTVMKLPPITLLFM-------TSPTLNPTLLTCMAISsAALGGWMGLNQTQIRKILAFSSISHLGWMTIIISY 196
Cdd:PRK07363 238 AVAILLGGVLAKLGTYGLLRFglqlfpqTWSLVAPGLAIIGTIS-VIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAA 316
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 197 NPKLTLLN---------------FYLYTLMTAAVfitlNSMKTLKLSTLMTSWTKTPSLSAMLFLTLLSLAGLPPLTGFL 261
Cdd:PRK07363 317 GTQLSLLGavaqmishglilallFHLVGIVERKV----GTRDLDVLNGLMNPIRGLPLTSALLVLAGMASAGIPGLVGFV 392

                 ....*..
gi 459466248 262 PKWLIIQ 268
Cdd:PRK07363 393 AEFIVFQ 399
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
11-271 1.12e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 46.87  E-value: 1.12e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248  11 LSIFLGTA-IAISSSHWVVIWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQATASTLVLFSSMTNAWYTGQWDITQL 89
Cdd:PRK07234 100 LLILHGSVnAAFVCADLISLYVALEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGL 179
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248  90 TH--PMSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTVM---KLPPITLLFMTSPTLNPtLLTCMAISSAAL 164
Cdd:PRK07234 180 ATadPEAFALIALGLLVKGGIFVSGLWLPLTHSEAEPPVSALLSGVVvkaGVFPLVRCALDVPGLDL-IVRIFGVGTALL 258
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 165 GGWMGLNQTQIRKILAFSSISHLGWMTIIISYNPkltllnfyLYTLMTAAVFITLNSMKTLKLSTLMTSWTKTP---SLS 241
Cdd:PRK07234 259 GVLFALLEKDLKRMLAFSTISQLGFILAAPLVGG--------LYALAHGLVKSTLFLCAGALPSRNFTELISQMlgiGKW 330
                        250       260       270
                 ....*....|....*....|....*....|
gi 459466248 242 AMLFLTLLSLAGLPPLTGFLPKWLIIQELT 271
Cdd:PRK07234 331 IPLTMASFSIAGFPLLAGFVSKVLTLKNLL 360
PRK06459 PRK06459
hydrogenase 4 subunit B; Validated
7-270 3.24e-05

hydrogenase 4 subunit B; Validated


Pssm-ID: 235806 [Multi-domain]  Cd Length: 585  Bit Score: 45.55  E-value: 3.24e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248   7 MIFILSIFLGTAIAISSSHWVVI--WTGLEINTLAILPLISKSHHPRAIeaatkyFLTQATASTLVLFSSMTNAWY-TGQ 83
Cdd:PRK06459  76 SLYILTILGMAIVLTSDNYLLFLagWEIMTIPSYVAIALTKKNKRPAFV------FMAFGELSTVLILAGFAWAFIiSGT 149
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248  84 WDITQLTHPMSCLILTSAIAMKLGLVPFHF--WFPEVLQGSPLTTGLILSTVMKLPPI----TLLFMTSPT-LNPTLLTC 156
Cdd:PRK06459 150 TNFSYLPSPVPLILASFGFIIKMGMMPFLVseWLPIAHGNAPSNFSAILSATMTLMGVygilKMTILTQTIpIGYFGLTI 229
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 157 MAIS--SAALGGWMGLNQTQIRKILAFSSISHLGWM-----TIIISYNPKLTLLNFYLYTLMTAAVFITLN------SMK 223
Cdd:PRK06459 230 LAIGafSILFGALYAYVSENVKGLLAFSTIENNGAIlvalgLYMVTKQLITSIEHFSLITVILYSFAHSVAktglflSSG 309
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*...
gi 459466248 224 TLKLSTLMTSWTKTPSLSAM-LFLTLLSLAGLPPLTGFLPKWLIIQEL 270
Cdd:PRK06459 310 LQEKQSITYSKKIRNRWIELgLTLLASSLSGLLPNIGGVASWLLLESL 357
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
13-219 3.54e-05

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 45.52  E-value: 3.54e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248  13 IFLGTAIAISSSHWVVIWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQATA------STLVLFSSMTNAWYTGQWDI 86
Cdd:PRK08676 111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248  87 TQLTHP----------MSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTVMKLPPITLLFMTSPTLNPT---- 152
Cdd:PRK08676 191 TELAAHasllspsvlgASFLFIFIGFLAKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLSALLRQSgaae 270
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 459466248 153 ----LLTCMAISSAALGGWMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLNFYLYTLMTAAVFITL 219
Cdd:PRK08676 271 qfsnVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLVKSGL 341
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
48-263 5.64e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 44.82  E-value: 5.64e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248  48 HHPRAIEAATKYFLTQATASTLVLFSSMTNAWYTGQWDITQLTHPMS---------------CLILTSAiAMKLGLVPFH 112
Cdd:PRK12649 156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSElienikghplflitlILIFIGA-AAKSAQGPFY 234
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 113 FWFPEVLQGSPLTTGLILSTVMKLPPITLLFMTSPTLNPT-----LLTCMAISSAALGGWMGLNQTQIRKILAFSSISHL 187
Cdd:PRK12649 235 IWLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQL 314
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 188 GWMTIIISYNPK------LTLLNFYL--YTLMTAAVF----ITLNSMKTLKLSTLMTSWTKTPSLSAMLFLTLLSLAGLP 255
Cdd:PRK12649 315 AYLMTMYGYTTYhepglgVAAATFHLlnHATFKACLFlvagIVAHEAATRDIRKLGGLRKEMPITFIVASIAALAMAGIP 394

                 ....*...
gi 459466248 256 PLTGFLPK 263
Cdd:PRK12649 395 PLNGFLSK 402
PRK12646 PRK12646
DUF4040 family protein;
92-272 6.12e-05

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 44.75  E-value: 6.12e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248  92 PMSCLILTSAIAmKLGLVPFHFWFPEVLQGSPLTTGLILSTVMKLPPITLLFMTSPTLNPT-----LLTCMAISSAALGG 166
Cdd:PRK12646 211 PMIFMFLLGAFT-KSAQFPFHIWLPRAMAAPTPVSAYLHSATMVKAGIFLLFRFTPLLGLSnmyiyIVTFVGLITMLFGS 289
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 167 WMGLNQTQIRKILAFSSISHLGW-MTII-----ISYNPKLTLLNFY-------LYTLMTAAVF---------ITLNSMKT 224
Cdd:PRK12646 290 ITALKQWDLKGILAYSTISQLGMiMAMVgigggYAQHQQDAIASIYvfvlfaaLFHLMNHAIFkcalfmgvgIIDHEAGT 369
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 459466248 225 LKLSTLMTSWTKTPSLSAMLFLTLLSLAGLPPLTGFLPKWLIIQELTK 272
Cdd:PRK12646 370 RDIRILSGMRQLFPKMNLVMTIAALSMAGVPFLNGFLSKEMFLDALTQ 417
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
34-298 6.61e-05

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 44.64  E-value: 6.61e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248  34 EINTLAILPLISKSHHPRAIEAATKYFLTQATASTLVLFSSMTNAWYTGQWDITQ-----LTHPMSCLILTSAIAMKLGL 108
Cdd:PRK06277 130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDihnalLVNPTSPVIYGGLLLLIFGL 209
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 109 V------PFHFWFPEVLQGSPLTTGLILSTVMKLPPITL------LFMTSPTLNPTLLTCMAISSAA--LGGWMGLNQTQ 174
Cdd:PRK06277 210 LygsglpPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALmlvifkLFGGLSYFPSAQGVLIALSVLAmvFGVVMALLQTD 289
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 175 IRKILAFSSISHLGWMTIIISYNPKLTL-------LNFYLYTlmtAAVFI----TLNSMKTLKLSTLMTSWTKTPSLSAM 243
Cdd:PRK06277 290 YKRLLAYHAISQGGYVAAGLALGTPLGIvagifhaINHVIYK---SALFLgagiVSYRTKTSNLRKLGGLLPVMPVVAFM 366
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 459466248 244 LFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMTPMAMTISMLSLLGLFFYLRLAY 298
Cdd:PRK06277 367 VLCAKLAISGVPPFNGFQSKLMLAQAAMQANMPELAIIMIIVSIGTFVSMMKAFY 421
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
154-298 1.01e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 43.87  E-value: 1.01e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 154 LTCMAISSAALggwmglNQTQIRKILAFSSISHLGWMTIIISYN-PKLTLLNFYLYTLMTAAVFITLNSM-----KTLKL 227
Cdd:MTH00209 248 LTTLMASMSAN------VESDLKKIIALSTLSQLGLMMCSLGLNqPELAFFHLITHALFKALLFICAGNIihshgHSQDI 321
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 459466248 228 STLMTSWTKTPSLSAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMTPMAMTISMLSL-LGLFFYLRLAY 298
Cdd:MTH00209 322 RMVGNLWYQMPITSICLNIANLSLCGIPFLAGFYSKDLILESMLESNMPIMTLILMFLSTsLTAAYSMRLSY 393
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
55-274 1.15e-04

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 43.87  E-value: 1.15e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248  55 AATKYFLTQATASTLVLFSSMTNAWYTGQ--WDITQLTH---PMSCLILTS-----AIAMKLGLVPFHFWFPE------- 117
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGAksyPLALELLLYagfliAFGVKLPIFPLHTWLPDahgeasa 217
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 118 ----VLQGSPLTTG---LILSTVMKLPPITLLFmtSPtlnptLLTCMAISSAALGGWMGLNQTQIRKILAFSSISHLGWM 190
Cdd:PRK12561 218 pvsmILAGVLLKMGgyaLIRFNVQMLPDAHVYF--AP-----ALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFV 290
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 191 TIIISYNPKL----TLLNFYLYTLMTAAVF----ITLNSMKTLKLSTLMTSWTKTPSLSAmLFLT--LLSLAgLPPLTGF 260
Cdd:PRK12561 291 LLGIAAFTDLgisgAMLQMISHGLIAAALFfltgVTYERTHTLSIPNMGGLAKVMPKTFA-LFTAssMASLA-LPGMSGF 368
                        250
                 ....*....|....
gi 459466248 261 LPKWLIIQELTKQD 274
Cdd:PRK12561 369 VSELTVFLGITSSD 382
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
55-266 1.18e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 43.92  E-value: 1.18e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248  55 AATKYFLTQATASTLVLFSSMTNAWYTG--QWDITQL---THPMSCLILTSA-----IAMKLGLVPFHFWFPEV-LQGSP 123
Cdd:PRK06473 158 AATKFLLYTAISGILILVSFLGLVWLSGasSFDYEPLrshTLPLSTQLLLLApilvgFGIKIPLVPFHTWLPDAhVEAST 237
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 124 LTTGLILSTVMKLPP-------ITLLFMTSPTLNPTLLTCMAISsAALGGWMGLNQTQIRKILAFSSISHLGWMTIIISY 196
Cdd:PRK06473 238 PVSVLLAGVLLKLGTygllrfgVGLFPEAWVYLAPWLATWAVVS-VLYGASCAIAQKDMKKMVAYSSIGHMGYILLAAAA 316
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 197 NPKLTLLNFY-----------LYTLMTAAVFITLNSMKTLKLSTLMTSWTKTPSLSAMLFLTLLSLAGLPPLTGFLPKWL 265
Cdd:PRK06473 317 ATPLSILAAVfqmishglisaLLFLLVGVVYKKTGSRDVDVLRGLLNPERGLPITGSLMILGVMASAGIPGMVGFIAEFL 396

                 .
gi 459466248 266 I 266
Cdd:PRK06473 397 V 397
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
50-267 1.31e-04

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 43.65  E-value: 1.31e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248  50 PRAIEAATKYFLTQATASTLVLFSSMTNAWY----TGQWDITQL-THPMSC-------LILTSAIAMKLGLVPFHFWFPE 117
Cdd:PRK05846 157 KNRIYAATKFFLYTLLGSLLMLVAIIYLVVVyynaTGTFDIADLlNLPLPPgvqywlfLAFFIAFAVKMPMFPLHTWLPD 236
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 118 VLQGSPLTTGLILSTVM-----------KLPpitlLFMTSPTLNPTLLTCMAISSAALGGWMGLNQTQIRKILAFSSISH 186
Cdd:PRK05846 237 AHVQAPTAGSVLLAGILlkmgaygllrfSLP----LFPDASHEFAPIIITLGVIAIIYGALVALAQTDIKKLIAYSSISH 312
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 187 LGWMTI-IISYNPK-LTLLNFYL--YTLMTAAVFITL----NSMKTLKLSTLMTSWTKTPSLSAMLFLTLLSLAGLPPLT 258
Cdd:PRK05846 313 MGFVTLgIFAGNQLgIQGAIFQMisHGLSSAALFLLVgvlyDRLHTRDIADYGGLAKVMPVLAAFFLFFAMASLGLPGTS 392

                 ....*....
gi 459466248 259 GFLPKWLII 267
Cdd:PRK05846 393 GFVGEFLIL 401
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
82-268 1.31e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 43.60  E-value: 1.31e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248  82 GQWDITQLTH-PMSCLI---LTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTVMKLPPITLL-----FMTSPTLNPT 152
Cdd:MTH00207 165 GHWSITNMWQtDMNNYIalsIMIAAMTKSAQMPFSSWLPAAMAAPTPVSALVHSSTLVTAGVFLLirfypFLSSTYWFNP 244
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 153 LLTCMAISSAALGGWMGLNQTQIRKILAFSSISHLGWMTIIISYN-PKLTLLNFYLYTLMTAAVFITLNSM-----KTLK 226
Cdd:MTH00207 245 ALLLTASLTMLMAGLSAMTECDMKKIIALSTLSQLGVMMASLGLGmPKLALFHLITHALFKALLFVCAGSLihshhHSQD 324
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 459466248 227 LSTLMTSWTKTPSLSAMLFLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:MTH00207 325 LRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILE 366
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
52-190 2.44e-04

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 42.70  E-value: 2.44e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248  52 AIEAATKYFLTQATASTLVLFSSMTNAWYTGQWDITQLTHPMSCLILTSAIAMKLGLV----------------PFHFWF 115
Cdd:PRK07376 171 AADAAQKAFVVNRVGDFGLLLGILGLFWATGSFDFDGIADRLSELVSSGAVSGWLALLlcilvflgpmaksaqfPLHVWL 250
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 116 PEVLQGSPLTTGLILSTVMKLPPITLLFMTSPTLN--PTLLTCMAIS---SAALGGWMGLNQTQIRKILAFSSISHLGWM 190
Cdd:PRK07376 251 PDAMEGPTPISALIHAATMVAAGVFLVARMYPVFEqfPAVMTVIAWTgaiTAFLGASIALTQNDIKKGLAYSTISQLGYM 330
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
105-303 3.16e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 42.69  E-value: 3.16e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 105 KLGLvpfHFWFPEVLQGSPLTTGLILSTVMKLPPITL------LFMTSPtLNPTLLTCMAISSAALGGWMGLNQTQIRKI 178
Cdd:MTH00210 227 QLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLiirsgpLFEGSP-LALTIVTILGALTAFFAATVGVVQNDLKKV 302
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 179 LAFSSISHLGWMTIIISynpkltLLNFY--LYTLMTAAVFITL-------------NSMKTLKLSTLMTSwtkTPSLSAM 243
Cdd:MTH00210 303 IAYSTCSQLGYMVMVCG------ISNYStsLFHLMNHAFFKALlflsagsvihavsDEQDMRKMGGLIKS---IPFTYVM 373
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 459466248 244 LFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMTPMAMTISMLS-LLGLFFYLRLAYCATIT 303
Cdd:MTH00210 374 ILIGSLSLMGFPYLTGFYSKDLILELTYDKYYIAFAYWLGSFSaLLTAFYSIRLIYLTFIT 434
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
107-272 8.84e-04

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 40.97  E-value: 8.84e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 107 GLVPFHFWFPEVLQGSPLTTGLILSTV-MKLPPITLLFMTSPTLNPTL-----LTCMAISSAALGGWMGLNQTQIRKILA 180
Cdd:PRK08042 195 GIIPLHGWVPQAHANASAPAAALFSTVvMKIGLLGILTLSLLGGNAPLwwgvaLLVLGMITAFVGGLYALMEHNIQRLLA 274
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 181 FSSISHLG--------WMTIIISYNPKLTLLNFY--LYTLMTAAVFitlnsmKTLKLSTLMTSWTKT------------- 237
Cdd:PRK08042 275 YHTLENIGiillglgaGVTGIALEQPALIALGLVggLYHLLNHSLF------KSVLFLGAGSVWFRTghrdieklggigk 348
                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 459466248 238 --PSLSAMLFLTLLSLAGLPPLTGFLPKWLIIQELTK 272
Cdd:PRK08042 349 kmPVISIAMLVGLMAMAALPPLNGFAGEWVIYQSFFK 385
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
96-279 1.56e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 40.34  E-value: 1.56e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248  96 LILTSAIAMKLGLVPFHFWFPEVLQG--SPLTT---GLiLSTVMKLPPI---TLLFmTSPTLNpTLLTCMAISSAALGGW 167
Cdd:PRK12665 213 AVLLVAFGIKAAVFPLSFWLPDSYPTapAPVTAvfaGL-LTKVGVYAIIrthTLLF-PGGGLD-TLLMVVALLTMVVGIL 289
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 168 MGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLNFYLY---------TLMTAAVFITlNSMKTLKLSTLMTSWTKTP 238
Cdd:PRK12665 290 GAIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGLSGAIYYvahhitvqtTLFLVVGLIE-RQAGSSSLRRLGGLAKASP 368
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 459466248 239 SLSAMLFLTLLSLAGLPPLTGFLPKwLIIQELTKQDMTPMA 279
Cdd:PRK12665 369 LLAVLFFVPALNLGGIPPFSGFIGK-VALLEAGAEDGTWLA 408
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
2-274 1.94e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 39.80  E-value: 1.94e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248   2 NPQAMMIFILSIFLGTAIAISSShWVVIWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQATASTL-------VLFSS 74
Cdd:PRK06589 115 SSRFLFFFNLTILIGVLIALSSD-LFTMFVCYELLTISTAFLIGHTRNNISLSGGYKYLKILMISALLlflpaviLIYTK 193
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248  75 MTNAWYTGQWDITQLTHPMSCLILTSAIAmKLGLVPFHFWFPEVLQG----SPLTTGLILSTVMKLPPITLLFMTSPTLN 150
Cdd:PRK06589 194 TGNLDFVSGGLFSKNQSIILLLMFIYGIA-KTAIFPVHSWLPAAMVAhypvSALLHAVIVVKTGLFCIYKILLYIFGLSY 272
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 151 PTLLTCM-------AISSAALGGWMGLNQTQIRKILAFSSISHLGW--MTIIISYNPKLTLLNFYLYT--LMTAAVFITL 219
Cdd:PRK06589 273 LQRIFAEfnwlifiPIVSIFYSSLKALKTDNIKKILAYSTISQLSLalLSAFILTPKALGAAILHLVShsFAKICLFYSM 352
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 459466248 220 NSMKTLK----LSTLMTSWTKTPSLSAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQD 274
Cdd:PRK06589 353 GSIYSLKkedqVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQN 411
PRK12648 PRK12648
putative monovalent cation/H+ antiporter subunit A; Reviewed
164-263 4.06e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237157 [Multi-domain]  Cd Length: 948  Bit Score: 39.02  E-value: 4.06e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 164 LGGWMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLTLLnfylytlmtAAVFITLNSmKTLKLSTLMTS---------- 233
Cdd:PRK12648 284 LGAYFALFQHDLKGLLAYSTISHLGLITLLLGLGSPLAAV---------AAIFHIINH-ATFKASLFMAAgiidhetgtr 353
                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 459466248 234 --------WTKTPSLSAMLFLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12648 354 dmrrlsglRRLMPITATLAMVAAAAMAGVPLLNGFLSK 391
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
69-267 5.65e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 38.39  E-value: 5.65e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248  69 LVLFSSMTNAWYTGQWDITQLTHPMSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTVMKLPPITLLFMTSPT 148
Cdd:MTH00211 181 MVWLLLNLNSWEISQLFILNLDLTLFLLGLLLAAMGKSAQFGFHPWLPSAMEGPTPVSALLHSSTMVVAGVFLLIRLSPL 260
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 149 LNP-----TLLTCMAISSAALGGWMGLNQTQIRKILAFSSISHLGWMTIIISYNPKLtLLNFYLYT--------LMTAAV 215
Cdd:MTH00211 261 FQNnqlilGAVLLLGALTMLFGALCALTQNDIKKIVAFSTTSQLGLMMVTLGLNQPQ-LAFLHICThaffkamlFMCSGS 339
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 459466248 216 FI--TLNSMKTLKLSTLMTSwtkTPSLSAMLFLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00211 340 IIhgLNNEQDIRKMGGLSKN---LPFTSSCLFLGSLALMGFPFLSGFFSKDLIL 390
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
101-267 5.95e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 38.36  E-value: 5.95e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 101 AIAMKLGLVPFHFWFPEVLQGSPLTTGLILSTV-MKLPPITLLFMTSP-------TLNPTLLTcMAISSAALGGWMGLNQ 172
Cdd:MTH00226 239 AMAVKIPIFPFHIWLPKAHVEAPVAGSVLLAGIlLKLGGYGLVRLSWPilplgaqNLAPAVIA-MGIVGIVYGSFATCRQ 317
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459466248 173 TQIRKILAFSSISHLGWMTIIISYNPKLTLLNFYLYTLMTAAVFITLNSMKTLKLSTLMTSWTK--------TPSLSAML 244
Cdd:MTH00226 318 IDVKRLVAYSSVAHMGLVSITLVTHDIIGLTGSIFIMLAHGIVSSLLFILVTILYDRHHTRLIKyyrglsitMPIWGTIM 397
                        170       180
                 ....*....|....*....|...
gi 459466248 245 FLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00226 398 IVTSLANVAVPPSGNFIGEYLSI 420
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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