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Conserved domains on  [gi|459667136|gb|AGG80587|]
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ribosomal protein L17, partial [Lutzomyia longipalpis]

Protein Classification

uL14 family ribosomal protein( domain architecture ID 961)

uL14 family ribosomal protein similar to bacterial and chloroplast 50S ribosomal protein L14, human mitochondrial 39S ribosomal protein L14, and Paramecium mitochondrial tetraurelia 60S ribosomal protein L14

Gene Ontology:  GO:0003735|GO:0006412
PubMed:  24524803

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ribosomal_L14 super family cl00328
Ribosomal protein L14p/L23e;
1-77 1.60e-47

Ribosomal protein L14p/L23e;


The actual alignment was detected with superfamily member PTZ00054:

Pssm-ID: 444840  Cd Length: 139  Bit Score: 147.18  E-value: 1.60e-47
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 459667136   1 GAKNLYVIAVHGIKGRLNRLPAAGVGDMFVATVKKGKPELRKKVMPAVVIRQRKPFRRKDGVFIYFEDNAGVIVNNK 77
Cdd:PTZ00054  32 GAKNLYIIAVKGIHGRLNRLPSASLGDMVLATVKKGKPELRKKVLNAVIIRQRKAWRRKDGVFIYFEDNAGVIVNPK 108
 
Name Accession Description Interval E-value
PTZ00054 PTZ00054
60S ribosomal protein L23; Provisional
 1-77 1.60e-47

60S ribosomal protein L23; Provisional


Pssm-ID: 185418  Cd Length: 139  Bit Score: 147.18  E-value: 1.60e-47
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 459667136   1 GAKNLYVIAVHGIKGRLNRLPAAGVGDMFVATVKKGKPELRKKVMPAVVIRQRKPFRRKDGVFIYFEDNAGVIVNNK 77
Cdd:PTZ00054  32 GAKNLYIIAVKGIHGRLNRLPSASLGDMVLATVKKGKPELRKKVLNAVIIRQRKAWRRKDGVFIYFEDNAGVIVNPK 108
uL14_arch TIGR03673
50S ribosomal protein uL14, archaeal form; Part of the 50S ribosomal subunit. Forms a cluster ...
 1-75 2.28e-33

50S ribosomal protein uL14, archaeal form; Part of the 50S ribosomal subunit. Forms a cluster with proteins L3 and L24e, part of which may contact the 16S rRNA in 2 intersubunit bridges.


Pssm-ID: 274716  Cd Length: 131  Bit Score: 110.90  E-value: 2.28e-33
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 459667136    1 GAKNLYVIAVHGIKGRLNRLPAAGVGDMFVATVKKGKPELRKKVMPAVVIRQRKPFRRKDGVFIYFEDNAGVIVN 75
Cdd:TIGR03673  24 GAKEVEVISVKGYKGVKRRLPSAGVGDMVVVSVKKGTPEMRKQVFRAVVVRQRKEYRRPDGTRVKFEDNAAVIVT 98
Ribosomal_L14 pfam00238
Ribosomal protein L14p/L23e;
1-77 3.08e-31

Ribosomal protein L14p/L23e;


Pssm-ID: 425547  Cd Length: 119  Bit Score: 105.17  E-value: 3.08e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459667136    1 GAKNLYVIAVHGIKGRlnrlPAAGVGDMFVATVKKGKP---ELRKKVMPAVVIRQRKPFRRKDGVFIYFEDNAGVIVNNK 77
Cdd:pfam00238  13 GAKEVMCIKVLGGSGR----RYASVGDIIVVSVKKAKPngkVKKGDVVKAVVVRTKKEIRRPDGSYIRFDDNAAVLINDK 88
Ribosomal_uL14 cd00337
Ribosomal protein uL14; Ribosomal protein uL14 (L14 in bacteria and mitochondria, L23 in ...
 1-77 6.34e-25

Ribosomal protein uL14; Ribosomal protein uL14 (L14 in bacteria and mitochondria, L23 in eukaryotes, L38 in fungal mitochondria) is part of the large ribosomal subunit, located between the centers of activity for peptidyl transferase and GTPase. uL14 has an "all beta" fold that binds 23S rRNA. Ribosomal proteins, which are components of ribosomal subunits, are RNA-binding proteins that might have multiple extra ribosomal functions and may be involved in tumorigenesis in mammals.


Pssm-ID: 466774  Cd Length: 114  Bit Score: 89.05  E-value: 6.34e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459667136   1 GAKNLYVIAVHGIKGRlnrlPAAGVGDMFVATVKKGKPE---LRKKVMPAVVIRQRKPFRRKDGVFIYFEDNAGVIVNNK 77
Cdd:cd00337   13 GAKKVKCIKVLGKKGR----RYAGVGDIIVVSVKKAKPEkkvKKGEVVKAVIVRTKKEIRRKDGSYIRFDDNAVVLINKK 88
 
Name Accession Description Interval E-value
PTZ00054 PTZ00054
60S ribosomal protein L23; Provisional
 1-77 1.60e-47

60S ribosomal protein L23; Provisional


Pssm-ID: 185418  Cd Length: 139  Bit Score: 147.18  E-value: 1.60e-47
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 459667136   1 GAKNLYVIAVHGIKGRLNRLPAAGVGDMFVATVKKGKPELRKKVMPAVVIRQRKPFRRKDGVFIYFEDNAGVIVNNK 77
Cdd:PTZ00054  32 GAKNLYIIAVKGIHGRLNRLPSASLGDMVLATVKKGKPELRKKVLNAVIIRQRKAWRRKDGVFIYFEDNAGVIVNPK 108
rpl14p PRK08571
50S ribosomal protein L14P; Reviewed
 1-75 1.03e-35

50S ribosomal protein L14P; Reviewed


Pssm-ID: 181478  Cd Length: 132  Bit Score: 116.93  E-value: 1.03e-35
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 459667136   1 GAKNLYVIAVHGIKGRLNRLPAAGVGDMFVATVKKGKPELRKKVMPAVVIRQRKPFRRKDGVFIYFEDNAGVIVN 75
Cdd:PRK08571  25 GAKEVEIISVKGYKGVKRRLPKAGVGDMVVVSVKKGTPEMRKQVLRAVVVRQRKEYRRPDGTRVKFEDNAAVIVT 99
uL14_arch TIGR03673
50S ribosomal protein uL14, archaeal form; Part of the 50S ribosomal subunit. Forms a cluster ...
 1-75 2.28e-33

50S ribosomal protein uL14, archaeal form; Part of the 50S ribosomal subunit. Forms a cluster with proteins L3 and L24e, part of which may contact the 16S rRNA in 2 intersubunit bridges.


Pssm-ID: 274716  Cd Length: 131  Bit Score: 110.90  E-value: 2.28e-33
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 459667136    1 GAKNLYVIAVHGIKGRLNRLPAAGVGDMFVATVKKGKPELRKKVMPAVVIRQRKPFRRKDGVFIYFEDNAGVIVN 75
Cdd:TIGR03673  24 GAKEVEVISVKGYKGVKRRLPSAGVGDMVVVSVKKGTPEMRKQVFRAVVVRQRKEYRRPDGTRVKFEDNAAVIVT 98
Ribosomal_L14 pfam00238
Ribosomal protein L14p/L23e;
1-77 3.08e-31

Ribosomal protein L14p/L23e;


Pssm-ID: 425547  Cd Length: 119  Bit Score: 105.17  E-value: 3.08e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459667136    1 GAKNLYVIAVHGIKGRlnrlPAAGVGDMFVATVKKGKP---ELRKKVMPAVVIRQRKPFRRKDGVFIYFEDNAGVIVNNK 77
Cdd:pfam00238  13 GAKEVMCIKVLGGSGR----RYASVGDIIVVSVKKAKPngkVKKGDVVKAVVVRTKKEIRRPDGSYIRFDDNAAVLINDK 88
Ribosomal_uL14 cd00337
Ribosomal protein uL14; Ribosomal protein uL14 (L14 in bacteria and mitochondria, L23 in ...
 1-77 6.34e-25

Ribosomal protein uL14; Ribosomal protein uL14 (L14 in bacteria and mitochondria, L23 in eukaryotes, L38 in fungal mitochondria) is part of the large ribosomal subunit, located between the centers of activity for peptidyl transferase and GTPase. uL14 has an "all beta" fold that binds 23S rRNA. Ribosomal proteins, which are components of ribosomal subunits, are RNA-binding proteins that might have multiple extra ribosomal functions and may be involved in tumorigenesis in mammals.


Pssm-ID: 466774  Cd Length: 114  Bit Score: 89.05  E-value: 6.34e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 459667136   1 GAKNLYVIAVHGIKGRlnrlPAAGVGDMFVATVKKGKPE---LRKKVMPAVVIRQRKPFRRKDGVFIYFEDNAGVIVNNK 77
Cdd:cd00337   13 GAKKVKCIKVLGKKGR----RYAGVGDIIVVSVKKAKPEkkvKKGEVVKAVIVRTKKEIRRKDGSYIRFDDNAVVLINKK 88
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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