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Conserved domains on  [gi|459667308|gb|AGG80673|]
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ribosomal protein L36, partial [Lutzomyia longipalpis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ribosomal_L36e super family cl47636
Ribosomal protein L36e;
1-50 3.45e-18

Ribosomal protein L36e;


The actual alignment was detected with superfamily member pfam01158:

Pssm-ID: 460088 [Multi-domain]  Cd Length: 96  Bit Score: 70.26  E-value: 3.45e-18
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 459667308   1 RKVKGLRPDRLKCVQTKHTKFVRDIVREVVGYAPYEKRCMELLKVSKDKR 50
Cdd:pfam01158 16 KNVSKPRPSRRKGRLTKRTKFVRDIIREVAGFAPYERRVMELLKVSKDKR 65
 
Name Accession Description Interval E-value
Ribosomal_L36e pfam01158
Ribosomal protein L36e;
1-50 3.45e-18

Ribosomal protein L36e;


Pssm-ID: 460088 [Multi-domain]  Cd Length: 96  Bit Score: 70.26  E-value: 3.45e-18
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 459667308   1 RKVKGLRPDRLKCVQTKHTKFVRDIVREVVGYAPYEKRCMELLKVSKDKR 50
Cdd:pfam01158 16 KNVSKPRPSRRKGRLTKRTKFVRDIIREVAGFAPYERRVMELLKVSKDKR 65
PTZ00196 PTZ00196
60S ribosomal protein L36; Provisional
 1-50 2.21e-10

60S ribosomal protein L36; Provisional


Pssm-ID: 185509 [Multi-domain]  Cd Length: 98  Bit Score: 50.42  E-value: 2.21e-10
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|
gi 459667308  1 RKVKGLRPDRLKCVQTKHTKFVRDIVREVVGYAPYEKRCMELLKVSKDKR 50
Cdd:PTZ00196 17 KRARKPSPSKRKGLLSKRKRLVKDVIREVCGFSPYERRMIELLKVGKDKR 66
RPL36A COG5051
Ribosomal protein L36E [Translation, ribosomal structure and biogenesis];
7-50 1.11e-07

Ribosomal protein L36E [Translation, ribosomal structure and biogenesis];


Pssm-ID: 227384 [Multi-domain]  Cd Length: 97  Bit Score: 43.79  E-value: 1.11e-07
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....
gi 459667308  7 RPDRLKCVQTKHTKFVRDIVREVVGYAPYEKRCMELLKVSKDKR 50
Cdd:COG5051  25 RPSRKKGQLSKRTEFVRSIVREIAGLSPYERRVIELIRNSQDKR 68
 
Name Accession Description Interval E-value
Ribosomal_L36e pfam01158
Ribosomal protein L36e;
1-50 3.45e-18

Ribosomal protein L36e;


Pssm-ID: 460088 [Multi-domain]  Cd Length: 96  Bit Score: 70.26  E-value: 3.45e-18
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 459667308   1 RKVKGLRPDRLKCVQTKHTKFVRDIVREVVGYAPYEKRCMELLKVSKDKR 50
Cdd:pfam01158 16 KNVSKPRPSRRKGRLTKRTKFVRDIIREVAGFAPYERRVMELLKVSKDKR 65
PTZ00196 PTZ00196
60S ribosomal protein L36; Provisional
 1-50 2.21e-10

60S ribosomal protein L36; Provisional


Pssm-ID: 185509 [Multi-domain]  Cd Length: 98  Bit Score: 50.42  E-value: 2.21e-10
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|
gi 459667308  1 RKVKGLRPDRLKCVQTKHTKFVRDIVREVVGYAPYEKRCMELLKVSKDKR 50
Cdd:PTZ00196 17 KRARKPSPSKRKGLLSKRKRLVKDVIREVCGFSPYERRMIELLKVGKDKR 66
RPL36A COG5051
Ribosomal protein L36E [Translation, ribosomal structure and biogenesis];
7-50 1.11e-07

Ribosomal protein L36E [Translation, ribosomal structure and biogenesis];


Pssm-ID: 227384 [Multi-domain]  Cd Length: 97  Bit Score: 43.79  E-value: 1.11e-07
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....
gi 459667308  7 RPDRLKCVQTKHTKFVRDIVREVVGYAPYEKRCMELLKVSKDKR 50
Cdd:COG5051  25 RPSRKKGQLSKRTEFVRSIVREIAGLSPYERRVIELIRNSQDKR 68
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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