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Conserved domains on  [gi|461489744|gb|AGH18277|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Aethopyga linaraborae]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 1.66e-165

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 465.07  E-value: 1.66e-165
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744   1 MNPQAKLVFIISLVLGTTITVSSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWH 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744  81 TGQWDITQLTHPTSCLILTSAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKLPPLTLLYMTSPSLNPTVLATLAIL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744 161 SAALGGWMGLNQTQIRKIMAFSSISHLGWMAIILTYDPKLTLLNFYLYSMMTAAVFLTLNTIKVMNLTTLMTAWTKTPSL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATMIALLSLLSLFFYLRLAYCTTITLPPHTTNYMKQWRTNKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 461489744 321 TNPTIAILTTLSITLLPIAPLIRSIF 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 1.66e-165

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 465.07  E-value: 1.66e-165
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744   1 MNPQAKLVFIISLVLGTTITVSSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWH 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744  81 TGQWDITQLTHPTSCLILTSAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKLPPLTLLYMTSPSLNPTVLATLAIL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744 161 SAALGGWMGLNQTQIRKIMAFSSISHLGWMAIILTYDPKLTLLNFYLYSMMTAAVFLTLNTIKVMNLTTLMTAWTKTPSL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATMIALLSLLSLFFYLRLAYCTTITLPPHTTNYMKQWRTNKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 461489744 321 TNPTIAILTTLSITLLPIAPLIRSIF 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 3.27e-26

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 105.86  E-value: 3.27e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744   23 SNHWVLAWTGLEINTLAILPLI-SKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744   91 HPTSCLILTSAISMKLGLVPFHFWFPEVLQGSPL-ITGLLLSTAMKLPPLTLLYMTSPSLNPT-----VLATLAILSAAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTpVSALLAATLVKAGGYGLIRRSLLYLPSSpfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744  165 GGWMGLNQTQIRKIMAFSSISHLGWMAIIL----TYDPKLTLLNFYLYSMMTAAVFL-TLNTIKVMNLTTLMTA----WT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcAGSVIYRRVHTRNIRDygglAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 461489744  236 KTPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-270 1.08e-23

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 101.35  E-value: 1.08e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744  14 VLGTTITVSSNHWVLAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLF-SSMTNAWhTGQWDITQLTH 91
Cdd:COG1007  112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSLNLAGIAA 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744  92 PTS------------CLILTSAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKL----PPLTLLYMTSPSLNP---T 152
Cdd:COG1007  191 ALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAdwqL 270

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744 153 VLATLAILSAALGGWMGLNQTQIRKIMAFSSISHLGWM--AIILTYDPKLTLLNFYL--YSMMTAAVFLTLNTIK----- 223
Cdd:COG1007  271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLllGLAAGTPLGVSAALFYLlaYLFMNLGAFAVILLLSrkgge 350

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*..
gi 461489744 224 VMNLTTLMTAWTKTPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQEL 270
Cdd:COG1007  351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAA 397
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-275 5.92e-21

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 93.47  E-value: 5.92e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744   14 VLGTTITVSSNHWVLAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLTHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744   93 TSCLILT------------SAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKLP---PLTLLYMTSPS----LNPTV 153
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYILFgfseAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744  154 LATLAILSAALGGWMGLNQTQIRKIMAFSSISHLGWMAIILTYDPKLTLLN--FYL--YSMMTAAVFLTLNTIKVMNLT- 228
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLSLLRSYKDEw 351

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 461489744  229 ----TLMTAWTKT-PSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDM 275
Cdd:TIGR01770 352 ieyiSDFAGLFKTnPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGL 403
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 1.66e-165

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 465.07  E-value: 1.66e-165
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744   1 MNPQAKLVFIISLVLGTTITVSSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWH 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744  81 TGQWDITQLTHPTSCLILTSAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKLPPLTLLYMTSPSLNPTVLATLAIL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744 161 SAALGGWMGLNQTQIRKIMAFSSISHLGWMAIILTYDPKLTLLNFYLYSMMTAAVFLTLNTIKVMNLTTLMTAWTKTPSL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATMIALLSLLSLFFYLRLAYCTTITLPPHTTNYMKQWRTNKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 461489744 321 TNPTIAILTTLSITLLPIAPLIRSIF 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-346 2.16e-136

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 391.59  E-value: 2.16e-136
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744   1 MNPQAKLVFIISLVLGTTITVSSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWH 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744  81 TGQWDITQLTHPTSCLILTSAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKLPPLTLLYMTSPSLNPTVLATLAIL 160
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744 161 SAALGGWMGLNQTQIRKIMAFSSISHLGWMAIILTYDPKLTLLNFYLYSMMTAAVFLTLNTIKVMNLTTLMTAWTKTPSL 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATMIALLSLLSLFFYLRLAYCTTITLPPHTTNYMKQWRTNKP 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320

                        330       340
                 ....*....|....*....|....*.
gi 461489744 321 TNPTIAILTTLSITLLPIAPLIRSIF 346
Cdd:MTH00070 321 TNNLLSLTIILSLMLLPITPTILNLF 346
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-346 4.37e-135

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 388.01  E-value: 4.37e-135
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744   1 MNPQAKLVFIISLVLGTTITVSSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWH 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744  81 TGQWDITQLTHPTSCLILTSAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKLPPLTLLYMTSPSlNPTVLATLAIL 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744 161 SAALGGWMGLNQTQIRKIMAFSSISHLGWMAIILTYDPKLTLLNFYLYSMMTAAVFLTLNTIKVMNLTTLMTAWTKTPSL 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATMIALLSLLSLFFYLRLAYCTTITLPPHTTNYMKQWRTnKP 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRL-PS 318

                        330       340
                 ....*....|....*....|....*...
gi 461489744 321 TNPT--IAILTTLSITLLPIAPLIRSIF 346
Cdd:MTH00135 319 TQLTlpLAISTTATLMLLPLTPAILALL 346
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-342 1.69e-114

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 335.66  E-value: 1.69e-114
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744   1 MNPQAKLVFIISLVLGTTITVSSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWH 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744  81 TGQWDITQLTHPTSCLILTSAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKLPPLTLLYMTSPSLNPTVLATLAIL 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744 161 SAALGGWMGLNQTQIRKIMAFSSISHLGWMAIILTYDPKLTLLNFYLYSMMTAAVFLTLNTIKVMNLTTLMTAWTKTPSL 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATMIALLSLLSLFFYLRLAYCTTITLPPHTTNYMKQWR-TNK 319
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQfENT 320

                        330       340
                 ....*....|....*....|...
gi 461489744 320 PTNPTIAILTTLSITLLPIAPLI 342
Cdd:MTH00105 321 KPMTLLPTLIILSTMLLPLTPML 343
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-346 3.04e-100

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 299.58  E-value: 3.04e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744   1 MNPQAKLVFIISLVLGTTITVSSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWH 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744  81 TGQWDITQLTHPTSCLILTSAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKLPPLTLLYMTSPSLNPTVLATLAIL 160
Cdd:MTH00200  81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744 161 SAALGGWMGLNQTQIRKIMAFSSISHLGWMAIILTYDPKLTLLNFYLYSMMTAAVFLTLNTIKVMNLTTLMTAWTKTPSL 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATMIALLSLLSLFFYLRLAYCTTITLPPHTTNYMKQWRTNKP 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320

                        330       340
                 ....*....|....*....|....*.
gi 461489744 321 TNPTIAILTTLSITLLPIAPLIRSIF 346
Cdd:MTH00200 321 SNLLVGLLLLLSILGLPLTPQLLFLF 346
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-341 4.70e-78

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 242.91  E-value: 4.70e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744   1 MNPQAKLVFIISLVLGTTITVSSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWH 80
Cdd:MTH00041   1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744  81 TGQWDITQLTHPTSCLILTSAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKLPPLTLLYMTSPSLNPTVLATLAIL 160
Cdd:MTH00041  81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744 161 SAALGGWMGLNQTQIRKIMAFSSISHLGWMAIILTYDPKLTLLNFYLYSMMTAAVFLTLNTIKVMNLTTLMTAWTKTPSL 240
Cdd:MTH00041 161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQD-MAPAATMIAlLSLLSLFFYLRLAYCTTITLPPHTTNYMKQWRTNK 319
Cdd:MTH00041 241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNsILISIILII-GSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSG 319

                        330       340
                 ....*....|....*....|...
gi 461489744 320 PTNPTIAILTTLS-ITLLPIAPL 341
Cdd:MTH00041 320 NITVYGVILSILSsISILGLLLI 342
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-342 5.10e-55

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 183.10  E-value: 5.10e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744   1 MNPQAKLVFIISLVLGTTITVSSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWh 80
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744  81 tgqwdITQLTHPTSCLILTSAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKLPPLTLLYMTspsLNPTVLATLAIL 160
Cdd:MTH00160  81 -----NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIIL 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744 161 SAALGGWMGLNQTQIRKIMAFSSISHLGWMAIILTYDPKLTLLNFYLYSMMTAAVFLTLNTIKVMNLTTLMTAWTKTPSL 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATMIALLSLLSLFFYLRLAYCTTITLPPHTTNYMKQwrTNKP 320
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKK--KKNK 310

                        330       340
                 ....*....|....*....|..
gi 461489744 321 TNPTIAILTTLSITLLPIAPLI 342
Cdd:MTH00160 311 FSLILNFLSFISLFGLILSSLL 332
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 5-275 1.55e-46

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 160.82  E-value: 1.55e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744   5 AKLVFIISLVLGTTITVSSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQW 84
Cdd:MTH00144   5 SNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744  85 DITqlthptscLILTSAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKLPPLTLLYMTSPSLNP-TVLATLAILSAA 163
Cdd:MTH00144  85 FSM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSAL 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744 164 LGGWMGLNQTQIRKIMAFSSISHLGWMAIILTYDPKLTLLNFYLYSMMTAAVFLTLNTIKVMNLTTLmtAWTKTPSLNAM 243
Cdd:MTH00144 157 VGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDL--GSLKPSYKTGL 234

                        250       260       270
                 ....*....|....*....|....*....|...
gi 461489744 244 LLLTLLSLAG-LPPLTGFLPKWLIIQELTKQDM 275
Cdd:MTH00144 235 SIISLLLSLGgLPPFLGFCSKLLVLISSMESSP 267
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 7-275 2.85e-44

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 154.94  E-value: 2.85e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744   7 LVFIISLVLGTTITVSSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSmtnawhTGQWDI 86
Cdd:MTH00011   9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWSF 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744  87 TQLTHPTSCLILTSAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKLPPLTLLYMTSPSLNPTVLATLAILSAALGG 166
Cdd:MTH00011  83 PSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGG 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744 167 WMGLNQTQIRKIMAFSSISHLGWMAIILTYDPKLTLLNFYLYSMMTAAVFLTLNTIKVMNLTTLMTAWTKTPSLNAMLLL 246
Cdd:MTH00011 163 LGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFI 242

                        250       260
                 ....*....|....*....|....*....
gi 461489744 247 TLLSLAGLPPLTGFLPKWLIIQELTKQDM 275
Cdd:MTH00011 243 MLLSLGGLPPFTGFMPKLMAIETLTSNSM 271
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 8-270 8.62e-38

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 137.50  E-value: 8.62e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744   8 VFIISLVLGTTITVSSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTgqwdit 87
Cdd:MTH00197   2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL------ 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744  88 qLTHPTSCLILTSAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKLPPLTLLymTSPSLNPTVLATLAILSAALGGW 167
Cdd:MTH00197  76 -YLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLIL--AFNSSSFMGLLICSVLSSLIGGI 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744 168 MGLNQTQIRKIMAFSSISHLGWMAIILTYDPKLTLLNFYLYSMMTAAVFLTLNTIKVMNLTTlMTAWTKTPSLNAMLLLT 247
Cdd:MTH00197 153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQ-QYSNPESMSSNLVFLGL 231

                        250       260
                 ....*....|....*....|....
gi 461489744 248 LLSLAG-LPPLTGFLPKWLIIQEL 270
Cdd:MTH00197 232 SFLSLGgLPPLSGFFLKWLILTSL 255
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 3.27e-26

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 105.86  E-value: 3.27e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744   23 SNHWVLAWTGLEINTLAILPLI-SKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744   91 HPTSCLILTSAISMKLGLVPFHFWFPEVLQGSPL-ITGLLLSTAMKLPPLTLLYMTSPSLNPT-----VLATLAILSAAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTpVSALLAATLVKAGGYGLIRRSLLYLPSSpfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744  165 GGWMGLNQTQIRKIMAFSSISHLGWMAIIL----TYDPKLTLLNFYLYSMMTAAVFL-TLNTIKVMNLTTLMTA----WT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcAGSVIYRRVHTRNIRDygglAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 461489744  236 KTPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-267 9.42e-24

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 100.10  E-value: 9.42e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744  13 LVLGTTITVSSNHWVLAWTGLEINTLAILPLI-SKSHHPRAIEAATKYFLTQAAASALVLFS-------------SMTNA 78
Cdd:MTH00196   2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744  79 WHTGQWDITQLTHPTSCLILTSAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKLPPLTLLYMTSPSLNptVLATLA 158
Cdd:MTH00196  82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVN--ILLIGG 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744 159 ILSAALGGWMGLNQTQIRKIMAFSSISHLGWMAIILTYDP----KLTLLNFYLYSMMTAAVF---LTLNTIKVMnLTTLM 231
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSICVFsiiLALNVYKNL-IIEFS 238

                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 461489744 232 TAWTKTPSLNAMLLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00196 239 GLSRRLPILAITLALTFLSIAGIPPLVGFLGKWLIL 274
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-270 1.08e-23

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 101.35  E-value: 1.08e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744  14 VLGTTITVSSNHWVLAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLF-SSMTNAWhTGQWDITQLTH 91
Cdd:COG1007  112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSLNLAGIAA 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744  92 PTS------------CLILTSAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKL----PPLTLLYMTSPSLNP---T 152
Cdd:COG1007  191 ALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAdwqL 270

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744 153 VLATLAILSAALGGWMGLNQTQIRKIMAFSSISHLGWM--AIILTYDPKLTLLNFYL--YSMMTAAVFLTLNTIK----- 223
Cdd:COG1007  271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLllGLAAGTPLGVSAALFYLlaYLFMNLGAFAVILLLSrkgge 350

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*..
gi 461489744 224 VMNLTTLMTAWTKTPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQEL 270
Cdd:COG1007  351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAA 397
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
14-279 4.32e-22

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 96.81  E-value: 4.32e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744  14 VLGTTITVSSNHWVLAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVL--------------FSSMTNA 78
Cdd:PRK05777 113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLygmsllygatgslsFAGIAKA 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744  79 WHTGQWDITQLThpTSCLILTSAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKL----PPLTLLYMTSPSLNPT-- 152
Cdd:PRK05777 193 LADGSGNSLLLL--FGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaVLLRLLVVAFGGLSEDwq 270

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744 153 -VLATLAILSAALGGWMGLNQTQIRKIMAFSSISHLGWM---AIILTYDPKLTLLnFYL--YSMMTAAVFLTLNTIK--- 223
Cdd:PRK05777 271 qVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLlvgLAAGTAEGYSAVL-FYLlaYLFMTLGAFGVISLLRrkg 349

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 461489744 224 --VMNLTTLMTAWTKTPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAA 279
Cdd:PRK05777 350 geAESISDFAGLSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLA 407
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 8-267 1.40e-21

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 95.08  E-value: 1.40e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744   8 VFIISLVLGTTITVSSNHWVLAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDI 86
Cdd:MTH00199 101 ILILIVALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSI 180

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744  87 ----TQLTHPTSCLILTSAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKLPPLTLLYMTSPSLNptVLATLAILSA 162
Cdd:MTH00199 181 qginSILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTN--VVLICAVLSI 258

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744 163 ALGGWMGLNQTQIRKIMAFSSISHLGW----MAIILTYDPKLTLLNFYLYSMMTAAVFLTLNTIKVMN--LTTLMTAWTK 236
Cdd:MTH00199 259 IYGAIGALNQTKIKRLLAYSGIGHMGFilfgVAIGSFESIQASLIYMIIYVIMSICSFSIILSLKLTKglIVEVSGLSRK 338

                        250       260       270
                 ....*....|....*....|....*....|.
gi 461489744 237 TPSLNAMLLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00199 339 NPVIALTLALTFLSIAGIPPLAGFLSKWLIL 369
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-275 5.92e-21

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 93.47  E-value: 5.92e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744   14 VLGTTITVSSNHWVLAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLTHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744   93 TSCLILT------------SAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKLP---PLTLLYMTSPS----LNPTV 153
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYILFgfseAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744  154 LATLAILSAALGGWMGLNQTQIRKIMAFSSISHLGWMAIILTYDPKLTLLN--FYL--YSMMTAAVFLTLNTIKVMNLT- 228
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLSLLRSYKDEw 351

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 461489744  229 ----TLMTAWTKT-PSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDM 275
Cdd:TIGR01770 352 ieyiSDFAGLFKTnPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGL 403
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 13-283 1.81e-14

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 74.03  E-value: 1.81e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744  13 LVLGTTITVSSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLTH- 91
Cdd:COG0651  116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAAr 195

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744  92 ---------PTSCLILTSAISMKLGLVPFHFWFPEVLQGSP-----LITGLLLSTA----MKLppLTLLYMTSPSLNP-T 152
Cdd:COG0651  196 laeldpgllLAAFALLLVGFGIKAALFPLHFWLPDAYPAAPspvsaLLSGLLTKVGvyaiLRV--LTLLFGADPALFLgT 273

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744 153 VLATLAILSAALGGWMGLNQTQIRKIMAFSSISHLGWMAIILTYDPKLTLLNFYLY----SMMTAAVFLTLNTIKVM--- 225
Cdd:COG0651  274 LLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHllnhALAKALLFLAAGAIERAtgt 353

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 461489744 226 -NLTTLMTAWTKTPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATMIA 283
Cdd:COG0651  354 rDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLL 412
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 3-192 5.75e-14

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 72.58  E-value: 5.75e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744   3 PQAKLVFIISLVLGTTITVSSNHWVLAWTGLEINTLAILPLISKSHHPRAI---------EAATKYFLTQAAASALVLFS 73
Cdd:MTH00198 187 PRSGFALVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFG 266

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744  74 SMTNAWHTGQ----WDITQLTHPTS----------CLILTSAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKLPPL 139
Cdd:MTH00198 267 CALYFGFTGNegmlGTILSATLETTnielrqgslgYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVY 346

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 461489744 140 TLLymTSPSLNPTVLATLAILSAALGGWMGLNQTQIRKIMAFSSISHLGWMAI 192
Cdd:MTH00198 347 ILL--TSLVITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILI 397
ndhB CHL00049
NADH dehydrogenase subunit 2
 7-263 8.27e-13

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 68.88  E-value: 8.27e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744   7 LVFIISLVLGTTITVSSNHWVLAWTGLEINTLAILPLISKSHHP-RAIEAATKYFLTQAAASALVL--FSSM--TNAWHT 81
Cdd:CHL00049 114 LLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTKKDvRSNEATMKYLLMGGASSSILVygFSWLygLSGGEI 193

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744  82 GQWDI------TQLTHPTSCLI----LTSAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKLPPLTL----LYMTSP 147
Cdd:CHL00049 194 ELQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAASALatriFDIPFY 273

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744 148 SLNP---TVLATLAILSAALGGWMGLNQTQIRKIMAFSSISHLGWMAI-ILTYDPK------LTLLNFYLysmmtaavFL 217
Cdd:CHL00049 274 FSSNewhLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIgIIVGDSNdgyasmITYMLFYI--------FM 345

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 461489744 218 TLNTIKVMNLTTLMTA----------WTKTPSLNAMLLLTLLSLAGLPPLTGFLPK 263
Cdd:CHL00049 346 NLGTFACIVLFGLRTGtdnirdyaglYTKDPFLALSLALCLLSLGGIPPLAGFFGK 401
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-195 7.62e-11

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 63.15  E-value: 7.62e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744  50 PRAIEAATKYFLTQAAASALVLF-SSMTNAWHTGQwdiTQL--------THPTSCLILT-----SAISMKLGLVPFHFWF 115
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGS---TQLsaialaliTSPSLGLALAlvfviAGIAFKISAVPFHQWT 233

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744 116 PEVLQGSPLITGLLLSTAMKLP----PLTLLYMTSPSLNP---TVLATLAILSAALGGWMGLNQTQIRKIMAFSSISHLG 188
Cdd:PRK02504 234 PDVYEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPSFDEqwkLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAG 313


                 ....*..
gi 461489744 189 WMAIILT 195
Cdd:PRK02504 314 FVMIGLV 320
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 49-192 9.57e-11

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 62.79  E-value: 9.57e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744  49 HPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQW--DITQLTH-----PTSCLILTS---AISMKLGLVPFHFWFPEV 118
Cdd:COG1008  156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAaplplTAQLLLFLAffiAFAVKVPMFPFHTWLPDA 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744 119 LQ-----GSPLITGLLLST--------AMKLPPLTLLYMTspslnpTVLATLAILSAALGGWMGLNQTQIRKIMAFSSIS 185
Cdd:COG1008  236 HVeaptaGSVLLAGVLLKMggygllrfALPLFPEASAYFA------PLLAALGVIGIIYGALVALAQTDLKRLIAYSSVS 309


                 ....*..
gi 461489744 186 HLGWMAI 192
Cdd:COG1008  310 HMGFVLL 316
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-266 2.49e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 58.57  E-value: 2.49e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744  33 LEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLFS---------SMTNAWHTGQWDITQLTHPTSCL-ILTSA 101
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGiallygqygTLNMAYLAVKMSENPTVVAKIALaLFIAG 229

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744 102 ISMKLGLVPFHFWFPEVLQGSPL-ITGLLL-STAMKLPPL--TLLYMTSPSLNPT----VLATLAILSAALGGWMGLNQT 173
Cdd:PRK08376 230 LAMKSGAVPVHMWLPDAYPAAPSsISAMLLvIKQAGLYALarVLFSIYGPAINLAtvgwVIIILGCLTMFVGVAMAVVQK 309

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744 174 QIRKIMAFSSISHLGWM------AIILTYDPKLT----------LLNFYLYSMMTAAVFLT----LNTIKVMNLTTLMTA 233
Cdd:PRK08376 310 DVKRLLAYHSVSQIGYMllglgvGLAALGDPAMAsygeialaggIYHIVNHALYKALLFLTagavIYETGTRNLNELGGL 389

                        250       260       270
                 ....*....|....*....|....*....|...
gi 461489744 234 WTKTPSLNAMLLLTLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK08376 390 ARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-192 2.47e-08

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 55.33  E-value: 2.47e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744   50 PRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQW----DITQLTHPTSC-----LILTSAISMKLGLVPFHFWFPEV-- 118
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGTfdllELLNLPLPFGVqtwlfLAFFIAFAVKVPLFPLHTWLPDAhv 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744  119 ---LQGSPLITGLLLSTA---MKLPPLTLLYMTSPSLNPtVLATLAILSAALGGWMGLNQTQIRKIMAFSSISHLGWMAI 192
Cdd:TIGR01972 232 eapTAGSVILAGVLLKMGtygFLRFNLPLFPDASLYFAP-VLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLL 310
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 2-282 3.58e-08

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 55.00  E-value: 3.58e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744   2 NPQAKLVFIISLVLGTTITVSSNHWVLAWTGLEINTLAILPLISKSHHpRAIEAATKYFLTQAAASALVLFSSMTNAWHT 81
Cdd:PRK08668  96 NDAYFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKT 174

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744  82 GQWDIT-------QLTHPTSCLI----LTSAISMKLGLVPFHFWFPEVLQGSPL--------------ITGLLLSTAMkL 136
Cdd:PRK08668 175 GTFDFAdisqgliNDTSTGFALIvflfLLAFGVAKAGIFPLHVWAPDAYSEAPQsfsavlsgqlsklgAYGFLLVLYV-L 253

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744 137 PPLTLL-----YMTSPSLNpTVLATLAILSAALGGWMGLNQTQIRKIMAFSSISHLGWMAIILTYDPKLT----LLNFYL 207
Cdd:PRK08668 254 PGTKLFsefgtYRGVPLFN-YILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGfaggLFHVFN 332

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744 208 YSMMTAAVFLTLNTIKVMNLTTLMT-----AWtKTPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATMI 282
Cdd:PRK08668 333 HALFKGLFFLIFAAVIYRTGTTKISemgglIE-KMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMA 411
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 96-263 1.61e-07

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 53.00  E-value: 1.61e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744  96 LILTSAISmKLGLVPFHFWFPEVLQGSPLITGLLLSTAM---------KLPPLtllYMTSPSLNPTVLaTLAILSAALGG 166
Cdd:PRK12644 208 LILVGALS-KSAIVPFHFWLPGAMAAPTPVSAYLHAAAMvkagiylvaRLAPG---FADVPVWRPTVL-VLGLATMLLGG 282

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744 167 WMGLNQTQIRKIMAFSSISHLGWMAIIL---TYDPKLTLLNFYL-YSMMTAAVFLTLNTIKVM----NLTTLMTAWTKTP 238
Cdd:PRK12644 283 WRALRQHDLKLILAYGTVSQLGFLTVLVgigTRDAALAGLAMLLaHALFKAALFLVVGIIDHStgtrDIRKLSGLGRRQP 362

                        170       180
                 ....*....|....*....|....*
gi 461489744 239 SLNAMLLLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12644 363 VLAVVAALAAASMAGLPPLLGFVAK 387
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 295-340 3.16e-06

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 43.79  E-value: 3.16e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 461489744  295 RLAYCTTITLPPHTTNYMKQWRTNKPTNPT-IAILTTLSITLLPIAP 340
Cdd:pfam06444   5 RLSYSTTLTLFPNTNNSKMKWRFNSTKNTLlLPTLTTLSILLLPLTP 51
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 21-194 4.78e-06

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 48.22  E-value: 4.78e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744  21 VSSNHWVLAWTGLEINTLAILPLISKSHH-PRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLTH-------- 91
Cdd:COG1009  128 VLSDNLLLLFVFWELVGLCSYLLIGFWYEkPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELLAaaptilss 207

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744  92 ----PTSCLILTSAISmKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKLPPLTLLYMTSP--SLNPTVLATLAILSAA-- 163
Cdd:COG1009  208 plltLILLLLLLGAFG-KSAQFPLHFWLPDAMEGPTPVSALLHAATMVKAGVYLLARLSPlfALSPVWLTVVAIIGAIta 286

                        170       180       190
                 ....*....|....*....|....*....|..
gi 461489744 164 -LGGWMGLNQTQIRKIMAFSSISHLGWMAIIL 194
Cdd:COG1009  287 lFAALIALAQTDIKRVLAYSTVSQLGYMFLAL 318
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
55-190 7.95e-06

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 47.39  E-value: 7.95e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744  55 AATKYFLTQAAASALVLFSSMTNAWHTG-------QWDITQLTHPTSCLILTS---AISMKLGLVPFHFWFPEV-LQGSP 123
Cdd:PRK06473 158 AATKFLLYTAISGILILVSFLGLVWLSGassfdyePLRSHTLPLSTQLLLLAPilvGFGIKIPLVPFHTWLPDAhVEAST 237

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 461489744 124 LITGLLLSTAMKLPPLTLL------YMTSPSLNPTVLATLAILSAALGGWMGLNQTQIRKIMAFSSISHLGWM 190
Cdd:PRK06473 238 PVSVLLAGVLLKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYI 310
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 50-192 8.28e-06

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 47.50  E-value: 8.28e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744  50 PRAIEAATKYFLTQAAASALVLFSSMTNAWH----TGQWDITQLTH---PTSCLILT-----SAISMKLGLVPFHFWFPE 117
Cdd:PRK05846 157 KNRIYAATKFFLYTLLGSLLMLVAIIYLVVVyynaTGTFDIADLLNlplPPGVQYWLflaffIAFAVKMPMFPLHTWLPD 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744 118 VLQ-----GSPLITGLLLSTA--------MKLPPLTLLYMTspslnpTVLATLAILSAALGGWMGLNQTQIRKIMAFSSI 184
Cdd:PRK05846 237 AHVqaptaGSVLLAGILLKMGaygllrfsLPLFPDASHEFA------PIIITLGVIAIIYGALVALAQTDIKKLIAYSSI 310


                 ....*...
gi 461489744 185 SHLGWMAI 192
Cdd:PRK05846 311 SHMGFVTL 318
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 13-192 1.00e-05

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 47.06  E-value: 1.00e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744  13 LVLGTTITVSSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAA------SALVLFSSMTNAWHTGQWDI 86
Cdd:PRK08676 111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744  87 TQLTHPTSCL----ILTSAISM------KLGLVPFHFWFPEVLQGSP-LITGLLLSTAMKLPPLTLLYMTS-------PS 148
Cdd:PRK08676 191 TELAAHASLLspsvLGASFLFIfigflaKSGLVPFHTWLPAAYAKAPsVVSALLSGTVLNIGIYGILRLSAllrqsgaAE 270

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 461489744 149 LNPTVLATLAILSAALGGWMGLNQTQIRKIMAFSSISHLGWMAI 192
Cdd:PRK08676 271 QFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLL 314
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 55-195 1.79e-05

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 46.65  E-value: 1.79e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744  55 AATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLTHPT-----SCLILTSAISMKLGLVPFHFWFPEVLQGSP-----L 124
Cdd:PRK08667 163 AGIFYFVMTQLSTVFLMLGIIVLFIQTGSFELSPLGASAgilslVFLLLFLGFGIKAGIIPFHKWLPYAHPASPsnvsaL 242

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 461489744 125 ITGLLLSTAMKLPPLTLLYMTSPSLNPTVLA-TLAILSAALGGWMGLNQTQIRKIMAFSSISHLGwmaIILT 195
Cdd:PRK08667 243 MSGVMLKVAVYGLVRFLMDVLSPELWWGVLIlLAGSISALLGVIYALKEHDLKGLLAYSSIENIG---IILM 311
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 28-192 3.88e-05

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 45.41  E-value: 3.88e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744  28 LAWtglEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQ--WDITQLTH---PTSCLILTS-- 100
Cdd:PRK12561 114 LMW---ELELVPVYLLISIWGGQKRLYAATKFILYTALASIFILVAGLALALSGDTftFDLAELGAksyPLALELLLYag 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744 101 ---AISMKLGLVPFHFWFPEV-----LQGSPLITGLLLSTA--------MKLPPLTLLYMtSPslnptVLATLAILSAAL 164
Cdd:PRK12561 191 fliAFGVKLPIFPLHTWLPDAhgeasAPVSMILAGVLLKMGgyalirfnVQMLPDAHVYF-AP-----ALAILGVVNIIY 264

                        170       180
                 ....*....|....*....|....*...
gi 461489744 165 GGWMGLNQTQIRKIMAFSSISHLGWMAI 192
Cdd:PRK12561 265 GALNAFAQDNVKRRLAYSSVSHMGFVLL 292
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 103-271 4.56e-05

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 45.33  E-value: 4.56e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744 103 SMKLGLvpfHFWFPEVLQGSPLITGLLLSTAMKLPPLTLLYMTSPSLNPTVLATLAI-----LSAALGGWMGLNQTQIRK 177
Cdd:MTH00032 239 SAQLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSFPLFEKAPLTLLIItifgaLTAFFAATVGLVQNDLKK 315

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744 178 IMAFSSISHLGWMAIILTYDPKLTLLNFYLYSMMTAAVFLTLNTIKVMNLTTL-------MTAWTKT-PSLNAMLLLTLL 249
Cdd:MTH00032 316 VIAYSTCSQLGYMVLIIGIEGSHNVGLFHLVNHAFFKALLFLSAGSVIHSTTVdeqdmrkMGGLIHSiPFTYTMMLIGSF 395

                        170       180
                 ....*....|....*....|..
gi 461489744 250 SLAGLPPLTGFLPKWLIIqELT 271
Cdd:MTH00032 396 SIMGLPYLTGFYSKDLIL-ELT 416
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-282 6.32e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 44.48  E-value: 6.32e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744  33 LEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFS-SMTNAwHTGQWDITQL--------THPTSCLILTSAIS 103
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvGLLYG-VTGTLNMADLagalaenpTVVTAFGFVLLALA 213

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744 104 MKLGLVPFHFWFPEVLQG-SPLITGLLLSTAMKLP--PLTLLY--------MTSPSLNpTVLATLAILSAALGGWMGLNQ 172
Cdd:PRK08375 214 LKAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAvyALIRIYftvfggdfRFALGLG-WLLAVLALLSMLVGSLAALGQ 292

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744 173 TQIRKIMAFSSISHLGWMAIILTYDPKLTLLN--FYL--YSMMTAAVFLTLNTIKVMNLTTLMTAWT----KTPSLNAML 244
Cdd:PRK08375 293 DDVKRVLAYSTVSQMGYILLGLALLTPLALAAglLHLlhHALMKGALFLAAGAIEVTYGTRRLSELSglgrRMPLTAAAF 372

                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 461489744 245 LLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATMI 282
Cdd:PRK08375 373 AVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVL 410
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 20-192 1.15e-04

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 43.77  E-value: 1.15e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744  20 TVSSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSM---TNAWhtgqwdiTQLTHPTSCL 96
Cdd:PRK06458 124 ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTIlvyANAA-------TVMGDGEMAI 196

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744  97 ILTSAISM----------------------KLGLVPFHFWFPEVLQGSP-----LITGLLLSTAMkLPPLTLLYMTSPSL 149
Cdd:PRK06458 197 LWTELLKHaslldptlmklafvflligfgtKVGLFPMHAWLPDAHSEAPspvsaLLSGVLLNVAL-YAVLRYYILIDAAI 275

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 461489744 150 NP----TVLATLAILSAALGGWMGLNQTQIRKIMAFSSISHLGWMAI 192
Cdd:PRK06458 276 GSdfpgRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAF 322
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
52-190 2.38e-04

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 43.09  E-value: 2.38e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744  52 AIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLTHPTSCLILTSAISMKLGLV----------------PFHFWF 115
Cdd:PRK07376 171 AADAAQKAFVVNRVGDFGLLLGILGLFWATGSFDFDGIADRLSELVSSGAVSGWLALLlcilvflgpmaksaqfPLHVWL 250

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744 116 PEVLQGSPLITGLLLSTAMKLPPLTLLYMTSP--SLNPTVLATLAI---LSAALGGWMGLNQTQIRKIMAFSSISHLGWM 190
Cdd:PRK07376 251 PDAMEGPTPISALIHAATMVAAGVFLVARMYPvfEQFPAVMTVIAWtgaITAFLGASIALTQNDIKKGLAYSTISQLGYM 330
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
55-203 2.40e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 42.78  E-value: 2.40e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744  55 AATKYFLTQAAASALVLFSSMTNAWHTGQWD------ITQ-LTHPTSCLILTSAI---SMKLGLVPFHFWFPEV-LQGSP 123
Cdd:PRK07363 158 ASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSfdydaiSTQnLSLNTQLILLTGLLlgfGIKIPLVPLHTWLPDAyTEASP 237

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744 124 LITGLLLSTAMKLPPLTL------LYMTSPSLNPTVLATLAILSAALGGWMGLNQTQIRKIMAFSSISHLGWMAIILTYD 197
Cdd:PRK07363 238 AVAILLGGVLAKLGTYGLlrfglqLFPQTWSLVAPGLAIIGTISVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAAG 317


                 ....*.
gi 461489744 198 PKLTLL 203
Cdd:PRK07363 318 TQLSLL 323
PRK12650 PRK12650
DUF4040 family protein;
80-190 2.50e-04

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 43.11  E-value: 2.50e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744  80 HTGQW-DITQLTHPTSCLILTSAISmKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKLPPLTLLYMTSPSL--NPT---V 153
Cdd:PRK12650 196 HSDVWaEKPGLTTVVAVLIAVAAFT-KSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFhdVAVwnwL 274

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 461489744 154 LATLAILSAALGGWMGLNQTQIRKIMAFSSISHLGWM 190
Cdd:PRK12650 275 LIIVGMITALMGAVFAVQKTDLKKLTAYSTVSQLGWI 311
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-267 2.51e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 42.80  E-value: 2.51e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744  33 LEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFS-----SMTNAWHTGqwDITQLTHP--------TSCLILT 99
Cdd:PRK12662 139 LEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGigflyAITGTLNMG--DMFLIIQDlptnraiqIGVLFIM 216

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744 100 SAISMKLGLVPFHFWFPEVLQGSPLITGLLLS-TAMKLPPLTL-----------LYMTSPSLNpTVLATLAILSAALGGW 167
Cdd:PRK12662 217 VGLFIKAALFPFHKWLIQAYSEAPSFISVFFSgTSTKVMIYLIirivydvfkanFVFTTLPFN-NVFMILAALAIVFGSV 295

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744 168 MGLNQTQIRKIMAFSSISHLGWMAIILTYDPKLTLLNFYLY----SMMTAAVFLTLNTI-------KVMNLTTLmtaWTK 236
Cdd:PRK12662 296 LAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFMVSGSIsyhfgttKLEDCLNL---WKS 372

                        250       260       270
                 ....*....|....*....|....*....|.
gi 461489744 237 TPSLNAMLLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:PRK12662 373 MPKITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
92-268 2.55e-04

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 42.63  E-value: 2.55e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744  92 PTSCLILTSAISMKLGLVPFhFWFPEVLQGSPLITGLLLSTAMK-------LPPLTLLYMTSPSLNPTVLATLAILSAAL 164
Cdd:PRK12663 207 TTIALLFLLAFGMKAALFPF-MWLPAAYHTPNTEVAALFAALLTkvgiyalIRVFTLLFPQERELLHPLLATMAAITMVI 285

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744 165 GGWMGLNQTQIRKIMAFSSISHLGWMAI---ILTYDPKLTLLNFYLYSMMT-AAVFLTLNTIKVM----NLTTLMTAWTK 236
Cdd:PRK12663 286 GALGALAYKDIRRIAGYQVISSIGFILLglaLGTPAGINGAIFYLVHDMVVkTALFLIAGSLVRLtgyrSLQYLGGLYRK 365

                        170       180       190
                 ....*....|....*....|....*....|..
gi 461489744 237 TPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK12663 366 EPLFGALFLILIFAIGGLPPFSGFWGKVLLVQ 397
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 48-196 2.73e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 42.89  E-value: 2.73e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744  48 HHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLTHPTS---------------CLILTSAISmKLGLVPFH 112
Cdd:PRK12649 156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSElienikghplflitlILIFIGAAA-KSAQGPFY 234

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744 113 FWFPEVLQGSPLITGLLLSTAMKLPPLTLLYMTSPSLNPT-----VLATLAILSAALGGWMGLNQTQIRKIMAFSSISHL 187
Cdd:PRK12649 235 IWLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQL 314


                 ....*....
gi 461489744 188 GWMAIILTY 196
Cdd:PRK12649 315 AYLMTMYGY 323
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
34-268 3.04e-04

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 42.33  E-value: 3.04e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744  34 EINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQ-----LTHPTSCLILTSAISMKLGL 108
Cdd:PRK06277 130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDihnalLVNPTSPVIYGGLLLLIFGL 209

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744 109 V------PFHFWFPEVLQGS-PLITGLLLS------TAMKLPPLTLLYMTS--PSLNpTVLATLAILSAALGGWMGLNQT 173
Cdd:PRK06277 210 LygsglpPFHTIKSDIYAKAkPFGSALLQTfskfvlVALMLVIFKLFGGLSyfPSAQ-GVLIALSVLAMVFGVVMALLQT 288

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744 174 QIRKIMAFSSISHLGWMAIILTYDPKLTL-------LNFYLYsmmTAAVFLTLNTI----KVMNLTTLMTAWTKTPSLNA 242
Cdd:PRK06277 289 DYKRLLAYHAISQGGYVAAGLALGTPLGIvagifhaINHVIY---KSALFLGAGIVsyrtKTSNLRKLGGLLPVMPVVAF 365

                        250       260
                 ....*....|....*....|....*.
gi 461489744 243 MLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK06277 366 MVLCAKLAISGVPPFNGFQSKLMLAQ 391
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-189 3.05e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 42.25  E-value: 3.05e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744  33 LEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLTH--PTSCLILTSAISMKLGLVP 110
Cdd:PRK07234 123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATadPEAFALIALGLLVKGGIFV 202

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744 111 FHFWFPEVLQGSPLITGLLLSTAM---KLPPLTLLYMTSPSLNPtVLATLAILSAALGGWMGLNQTQIRKIMAFSSISHL 187
Cdd:PRK07234 203 SGLWLPLTHSEAEPPVSALLSGVVvkaGVFPLVRCALDVPGLDL-IVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQL 281


                 ..
gi 461489744 188 GW 189
Cdd:PRK07234 282 GF 283
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 101-194 8.26e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 41.06  E-value: 8.26e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489744 101 AISMKLGLVPFHFWFPEV-----LQGSPLITGLLLstamKLPPLTLLYMTSP-------SLNPTVLAtLAILSAALGGWM 168
Cdd:MTH00226 239 AMAVKIPIFPFHIWLPKAhveapVAGSVLLAGILL----KLGGYGLVRLSWPilplgaqNLAPAVIA-MGIVGIVYGSFA 313

                         90       100
                 ....*....|....*....|....*.
gi 461489744 169 GLNQTQIRKIMAFSSISHLGWMAIIL 194
Cdd:MTH00226 314 TCRQIDVKRLVAYSSVAHMGLVSITL 339
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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