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Conserved domains on  [gi|461489762|gb|AGH18286|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Aethopyga shelleyi]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 6.78e-166

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 466.22  E-value: 6.78e-166
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762   1 MNPQAKLIFIISLALGTTITISSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFASMTNAWH 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762  81 TGQWDITQLTHPTSCLILTSAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKLPPLTLLYMTSPSLNPTVLTTMAIF 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762 161 SAAIGGWMGLNQTQIRKIMAFSSISHLGWMAIILTYDPKLTLLNFYLYSLMTAAVFLTLNTIKVLNLSTLMTAWTKTPSL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMATAATVIALLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWHINKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 461489762 321 TNPMIAILTTLSITLLPIAPTIYTIF 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 6.78e-166

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 466.22  E-value: 6.78e-166
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762   1 MNPQAKLIFIISLALGTTITISSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFASMTNAWH 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762  81 TGQWDITQLTHPTSCLILTSAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKLPPLTLLYMTSPSLNPTVLTTMAIF 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762 161 SAAIGGWMGLNQTQIRKIMAFSSISHLGWMAIILTYDPKLTLLNFYLYSLMTAAVFLTLNTIKVLNLSTLMTAWTKTPSL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMATAATVIALLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWHINKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 461489762 321 TNPMIAILTTLSITLLPIAPTIYTIF 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 1.01e-24

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 101.62  E-value: 1.01e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762   23 SNHWVLAWTGLEINTLAILPLI-SKSHHPRAIEAATKYFLTQAAASALVLFASMTNAWHTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762   91 HPTSCLILTSAISMKLGLVPFHFWFPEVLQGSPL-ITGLLLSTAMKLPPLTLLYMTSPSLNPT-----VLTTMAIFSAAI 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTpVSALLAATLVKAGGYGLIRRSLLYLPSSpfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762  165 GGWMGLNQTQIRKIMAFSSISHLGWMAIIL----TYDPKLTLLNFYLYSLMTAAVFL-----TLNTIKVLNLSTLMTAWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 461489762  236 KTPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-270 1.72e-23

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 100.58  E-value: 1.72e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762  14 ALGTTITISSNHWVLAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLF-ASMTNAWhTGQWDITQLTH 91
Cdd:COG1007  112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSLNLAGIAA 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762  92 PTS------------CLILTSAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKL----PPLTLLYMTSPSLNP---T 152
Cdd:COG1007  191 ALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAdwqL 270

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762 153 VLTTMAIFSAAIGGWMGLNQTQIRKIMAFSSISHLGWM--AIILTYDPKLTLLNFYL--YSLMTAAVFLTLNTIK----- 223
Cdd:COG1007  271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLllGLAAGTPLGVSAALFYLlaYLFMNLGAFAVILLLSrkgge 350

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*..
gi 461489762 224 VLNLSTLMTAWTKTPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQEL 270
Cdd:COG1007  351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAA 397
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 7-282 4.22e-20

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 90.78  E-value: 4.22e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762    7 LIFIISLaLGTTITISSNHWVLAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLFASMTNAWHTGQWD 85
Cdd:TIGR01770 106 ILLLFAL-LGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLN 184

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762   86 ITQLTHPTSCLILT------------SAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKLP---PLTLLYMTSPSLN 150
Cdd:TIGR01770 185 FEDLLLFLSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYILFGF 264

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762  151 PTVLTTM----AIFSAAIGGWMGLNQTQIRKIMAFSSISHLGWMAIILTYDPKLTLLN--FYL--YSLMTAAVFLTL--- 219
Cdd:TIGR01770 265 SEAWQIFlaiiAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLsll 344

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 461489762  220 ---NTIKVLNLSTLMTAWTKTPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMATAATVI 282
Cdd:TIGR01770 345 rsyKDEWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIA 410
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 6.78e-166

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 466.22  E-value: 6.78e-166
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762   1 MNPQAKLIFIISLALGTTITISSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFASMTNAWH 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762  81 TGQWDITQLTHPTSCLILTSAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKLPPLTLLYMTSPSLNPTVLTTMAIF 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762 161 SAAIGGWMGLNQTQIRKIMAFSSISHLGWMAIILTYDPKLTLLNFYLYSLMTAAVFLTLNTIKVLNLSTLMTAWTKTPSL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMATAATVIALLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWHINKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 461489762 321 TNPMIAILTTLSITLLPIAPTIYTIF 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-346 5.69e-137

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 392.75  E-value: 5.69e-137
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762   1 MNPQAKLIFIISLALGTTITISSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFASMTNAWH 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762  81 TGQWDITQLTHPTSCLILTSAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKLPPLTLLYMTSPSLNPTVLTTMAIF 160
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762 161 SAAIGGWMGLNQTQIRKIMAFSSISHLGWMAIILTYDPKLTLLNFYLYSLMTAAVFLTLNTIKVLNLSTLMTAWTKTPSL 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMATAATVIALLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWHINKP 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320

                        330       340
                 ....*....|....*....|....*.
gi 461489762 321 TNPMIAILTTLSITLLPIAPTIYTIF 346
Cdd:MTH00070 321 TNNLLSLTIILSLMLLPITPTILNLF 346
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-346 2.53e-136

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 391.09  E-value: 2.53e-136
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762   1 MNPQAKLIFIISLALGTTITISSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFASMTNAWH 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762  81 TGQWDITQLTHPTSCLILTSAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKLPPLTLLYMTSPSlNPTVLTTMAIF 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762 161 SAAIGGWMGLNQTQIRKIMAFSSISHLGWMAIILTYDPKLTLLNFYLYSLMTAAVFLTLNTIKVLNLSTLMTAWTKTPSL 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMATAATVIALLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWHINKP 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319

                        330       340
                 ....*....|....*....|....*..
gi 461489762 321 TNPM-IAILTTLSITLLPIAPTIYTIF 346
Cdd:MTH00135 320 QLTLpLAISTTATLMLLPLTPAILALL 346
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-346 3.18e-115

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 337.59  E-value: 3.18e-115
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762   1 MNPQAKLIFIISLALGTTITISSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFASMTNAWH 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762  81 TGQWDITQLTHPTSCLILTSAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKLPPLTLLYMTSPSLNPTVLTTMAIF 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762 161 SAAIGGWMGLNQTQIRKIMAFSSISHLGWMAIILTYDPKLTLLNFYLYSLMTAAVFLTLNTIKVLNLSTLMTAWTKTPSL 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMATAATVIALLSLLSLFFYLRLAYCTTITLPPhTTNHMK-QWHINK 319
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFP-STNNMKmKWQFEN 319

                        330       340
                 ....*....|....*....|....*...
gi 461489762 320 P-TNPMIAILTTLSITLLPIAPTIYTIF 346
Cdd:MTH00105 320 TkPMTLLPTLIILSTMLLPLTPMLSILE 347
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-346 1.71e-99

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 297.65  E-value: 1.71e-99
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762   1 MNPQAKLIFIISLALGTTITISSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFASMTNAWH 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762  81 TGQWDITQLTHPTSCLILTSAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKLPPLTLLYMTSPSLNPTVLTTMAIF 160
Cdd:MTH00200  81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762 161 SAAIGGWMGLNQTQIRKIMAFSSISHLGWMAIILTYDPKLTLLNFYLYSLMTAAVFLTLNTIKVLNLSTLMTAWTKTPSL 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMATAATVIALLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWHINKP 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320

                        330       340
                 ....*....|....*....|....*.
gi 461489762 321 TNPMIAILTTLSITLLPIAPTIYTIF 346
Cdd:MTH00200 321 SNLLVGLLLLLSILGLPLTPQLLFLF 346
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-336 3.15e-77

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 240.60  E-value: 3.15e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762   1 MNPQAKLIFIISLALGTTITISSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFASMTNAWH 80
Cdd:MTH00041   1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762  81 TGQWDITQLTHPTSCLILTSAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKLPPLTLLYMTSPSLNPTVLTTMAIF 160
Cdd:MTH00041  81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762 161 SAAIGGWMGLNQTQIRKIMAFSSISHLGWMAIILTYDPKLTLLNFYLYSLMTAAVFLTLNTIKVLNLSTLMTAWTKTPSL 240
Cdd:MTH00041 161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMATAATVIALLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWHINKP 320
Cdd:MTH00041 241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGN 320

                        330
                 ....*....|....*.
gi 461489762 321 TNPMIAILTTLSITLL 336
Cdd:MTH00041 321 ITVYGVILSILSSISI 336
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-345 9.64e-56

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 185.03  E-value: 9.64e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762   1 MNPQAKLIFIISLALGTTITISSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFASMTNAWh 80
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762  81 tgqwdITQLTHPTSCLILTSAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKLPPLTLLYMTspsLNPTVLTTMAIF 160
Cdd:MTH00160  81 -----NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIIL 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762 161 SAAIGGWMGLNQTQIRKIMAFSSISHLGWMAIILTYDPKLTLLNFYLYSLMTAAVFLTLNTIKVLNLSTLMTAWTKTPSL 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMATAATVIALLSLLSLFFYLRLAYcTTITLPPHTTNHMKQWHINKp 320
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISY-SSLMLNYNKNKWNLKKKKNK- 310

                        330       340
                 ....*....|....*....|....*
gi 461489762 321 TNPMIAILTTLSITLLPIAPTIYTI 345
Cdd:MTH00160 311 FSLILNFLSFISLFGLILSSLLFLL 335
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 5-275 7.12e-46

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 158.90  E-value: 7.12e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762   5 AKLIFIISLALGTTITISSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFASMTNAWHTGQW 84
Cdd:MTH00144   5 SNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762  85 DITqlthptscLILTSAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKLPPLTLLYMTSPSLNP-TVLTTMAIFSAA 163
Cdd:MTH00144  85 FSM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSAL 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762 164 IGGWMGLNQTQIRKIMAFSSISHLGWMAIILTYDPKLTLLNFYLYSLMTAAVFLTLNTIKVLNLSTLmtAWTKTPSLNAM 243
Cdd:MTH00144 157 VGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDL--GSLKPSYKTGL 234

                        250       260       270
                 ....*....|....*....|....*....|...
gi 461489762 244 LLLTLLSLAG-LPPLTGFLPKWLIIQELTKQDM 275
Cdd:MTH00144 235 SIISLLLSLGgLPPFLGFCSKLLVLISSMESSP 267
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 7-275 1.58e-44

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 155.71  E-value: 1.58e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762   7 LIFIISLALGTTITISSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFASmtnawhTGQWDI 86
Cdd:MTH00011   9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWSF 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762  87 TQLTHPTSCLILTSAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKLPPLTLLYMTSPSLNPTVLTTMAIFSAAIGG 166
Cdd:MTH00011  83 PSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGG 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762 167 WMGLNQTQIRKIMAFSSISHLGWMAIILTYDPKLTLLNFYLYSLMTAAVFLTLNTIKVLNLSTLMTAWTKTPSLNAMLLL 246
Cdd:MTH00011 163 LGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFI 242

                        250       260
                 ....*....|....*....|....*....
gi 461489762 247 TLLSLAGLPPLTGFLPKWLIIQELTKQDM 275
Cdd:MTH00011 243 MLLSLGGLPPFTGFMPKLMAIETLTSNSM 271
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 8-342 9.38e-38

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 137.50  E-value: 9.38e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762   8 IFIISLALGTTITISSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFASMTNAWHTgqwdit 87
Cdd:MTH00197   2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL------ 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762  88 qLTHPTSCLILTSAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKLPPLTLLymTSPSLNPTVLTTMAIFSAAIGGW 167
Cdd:MTH00197  76 -YLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLIL--AFNSSSFMGLLICSVLSSLIGGI 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762 168 MGLNQTQIRKIMAFSSISHLGWMAIILTYDPKLTLLNFYLYSLMTAAVFLTLNTIKVLNLSTlMTAWTKTPSLNAMLLLT 247
Cdd:MTH00197 153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQ-QYSNPESMSSNLVFLGL 231

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762 248 LLSLAG-LPPLTGFLPKWLIIQELTKQDMATAATVIALLSLLSLFFYLRLAYCTTItlppHTTNHMKQWHINKPTNPMIA 326
Cdd:MTH00197 232 SFLSLGgLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLI----LSNWMINFLMKINLLYSGLF 307

                        330
                 ....*....|....*.
gi 461489762 327 ILTTLSITLLPIAPTI 342
Cdd:MTH00197 308 ILLMMMLPLLMIFTMI 323
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 1.01e-24

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 101.62  E-value: 1.01e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762   23 SNHWVLAWTGLEINTLAILPLI-SKSHHPRAIEAATKYFLTQAAASALVLFASMTNAWHTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762   91 HPTSCLILTSAISMKLGLVPFHFWFPEVLQGSPL-ITGLLLSTAMKLPPLTLLYMTSPSLNPT-----VLTTMAIFSAAI 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTpVSALLAATLVKAGGYGLIRRSLLYLPSSpfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762  165 GGWMGLNQTQIRKIMAFSSISHLGWMAIIL----TYDPKLTLLNFYLYSLMTAAVFL-----TLNTIKVLNLSTLMTAWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 461489762  236 KTPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-267 3.47e-24

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 101.65  E-value: 3.47e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762  13 LALGTTITISSNHWVLAWTGLEINTLAILPLI-SKSHHPRAIEAATKYFLTQAAASALVLFA-------------SMTNA 78
Cdd:MTH00196   2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762  79 WHTGQWDITQLTHPTSCLILTSAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKLPPLTLLYMTSPSLNptVLTTMA 158
Cdd:MTH00196  82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVN--ILLIGG 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762 159 IFSAAIGGWMGLNQTQIRKIMAFSSISHLGWMAIILTYDP----KLTLLNFYLYSLMTAAVF---LTLNTIK--VLNLST 229
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSICVFsiiLALNVYKnlIIEFSG 239

                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 461489762 230 LMtawTKTPSLNAMLLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00196 240 LS---RRLPILAITLALTFLSIAGIPPLVGFLGKWLIL 274
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-270 1.72e-23

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 100.58  E-value: 1.72e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762  14 ALGTTITISSNHWVLAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLF-ASMTNAWhTGQWDITQLTH 91
Cdd:COG1007  112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSLNLAGIAA 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762  92 PTS------------CLILTSAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKL----PPLTLLYMTSPSLNP---T 152
Cdd:COG1007  191 ALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAdwqL 270

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762 153 VLTTMAIFSAAIGGWMGLNQTQIRKIMAFSSISHLGWM--AIILTYDPKLTLLNFYL--YSLMTAAVFLTLNTIK----- 223
Cdd:COG1007  271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLllGLAAGTPLGVSAALFYLlaYLFMNLGAFAVILLLSrkgge 350

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*..
gi 461489762 224 VLNLSTLMTAWTKTPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQEL 270
Cdd:COG1007  351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAA 397
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 8-267 1.87e-21

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 94.70  E-value: 1.87e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762   8 IFIISLALGTTITISSNHWVLAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLFASMTNAWHTGQWDI 86
Cdd:MTH00199 101 ILILIVALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSI 180

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762  87 ----TQLTHPTSCLILTSAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKLPPLTLLYMTSPSLNptVLTTMAIFSA 162
Cdd:MTH00199 181 qginSILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTN--VVLICAVLSI 258

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762 163 AIGGWMGLNQTQIRKIMAFSSISHLGW----MAIILTYDPKLTLLNFYLYSLMTAAVF---LTLNTIKVLnLSTLMTAWT 235
Cdd:MTH00199 259 IYGAIGALNQTKIKRLLAYSGIGHMGFilfgVAIGSFESIQASLIYMIIYVIMSICSFsiiLSLKLTKGL-IVEVSGLSR 337

                        250       260       270
                 ....*....|....*....|....*....|..
gi 461489762 236 KTPSLNAMLLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00199 338 KNPVIALTLALTFLSIAGIPPLAGFLSKWLIL 369
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
14-268 3.63e-21

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 94.12  E-value: 3.63e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762  14 ALGTTITISSNHWVLAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVL--------------FASMTNA 78
Cdd:PRK05777 113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLygmsllygatgslsFAGIAKA 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762  79 WHTGQWDITQLThpTSCLILTSAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKL----PPLTLLYMTSPSLNPT-- 152
Cdd:PRK05777 193 LADGSGNSLLLL--FGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaVLLRLLVVAFGGLSEDwq 270

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762 153 -VLTTMAIFSAAIGGWMGLNQTQIRKIMAFSSISHLGWM---AIILTYDPKLTLLnFYL--YSLMTAAVFLTLNTIK--- 223
Cdd:PRK05777 271 qVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLlvgLAAGTAEGYSAVL-FYLlaYLFMTLGAFGVISLLRrkg 349

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*..
gi 461489762 224 --VLNLSTLMTAWTKTPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK05777 350 geAESISDFAGLSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFE 396
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 7-282 4.22e-20

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 90.78  E-value: 4.22e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762    7 LIFIISLaLGTTITISSNHWVLAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLFASMTNAWHTGQWD 85
Cdd:TIGR01770 106 ILLLFAL-LGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLN 184

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762   86 ITQLTHPTSCLILT------------SAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKLP---PLTLLYMTSPSLN 150
Cdd:TIGR01770 185 FEDLLLFLSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYILFGF 264

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762  151 PTVLTTM----AIFSAAIGGWMGLNQTQIRKIMAFSSISHLGWMAIILTYDPKLTLLN--FYL--YSLMTAAVFLTL--- 219
Cdd:TIGR01770 265 SEAWQIFlaiiAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLsll 344

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 461489762  220 ---NTIKVLNLSTLMTAWTKTPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMATAATVI 282
Cdd:TIGR01770 345 rsyKDEWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIA 410
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 3-192 1.44e-14

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 74.51  E-value: 1.44e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762   3 PQAKLIFIISLALGTTITISSNHWVLAWTGLEINTLAILPLISKSHHPRAI---------EAATKYFLTQAAASALVLFA 73
Cdd:MTH00198 187 PRSGFALVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFG 266

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762  74 SMTNAWHTGQ----WDITQLTHPTS----------CLILTSAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKLPPL 139
Cdd:MTH00198 267 CALYFGFTGNegmlGTILSATLETTnielrqgslgYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVY 346

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 461489762 140 TLLymTSPSLNPTVLTTMAIFSAAIGGWMGLNQTQIRKIMAFSSISHLGWMAI 192
Cdd:MTH00198 347 ILL--TSLVITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILI 397
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 13-283 2.66e-14

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 73.26  E-value: 2.66e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762  13 LALGTTITISSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFASMTNAWHTGQWDITQLTH- 91
Cdd:COG0651  116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAAr 195

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762  92 ---------PTSCLILTSAISMKLGLVPFHFWFPEVLQGSP-----LITGLLLSTA----MKLppLTLLYMTSPSLNP-T 152
Cdd:COG0651  196 laeldpgllLAAFALLLVGFGIKAALFPLHFWLPDAYPAAPspvsaLLSGLLTKVGvyaiLRV--LTLLFGADPALFLgT 273

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762 153 VLTTMAIFSAAIGGWMGLNQTQIRKIMAFSSISHLGWMAIILTYDPKLTLLNFYLY----SLMTAAVFLTLNTIKVL--- 225
Cdd:COG0651  274 LLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHllnhALAKALLFLAAGAIERAtgt 353

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 461489762 226 -NLSTLMTAWTKTPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMATAATVIA 283
Cdd:COG0651  354 rDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLL 412
ndhB CHL00049
NADH dehydrogenase subunit 2
 7-263 4.75e-11

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 63.48  E-value: 4.75e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762   7 LIFIISLALGTTITISSNHWVLAWTGLEINTLAILPLISKSHHP-RAIEAATKYFLTQAAASALVLFA-SMTNAWHTGQW 84
Cdd:CHL00049 114 LLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTKKDvRSNEATMKYLLMGGASSSILVYGfSWLYGLSGGEI 193

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762  85 DI---------TQLTHPTSCLI----LTSAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKLPPLTL----LYMTSP 147
Cdd:CHL00049 194 ELqeivnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAASALatriFDIPFY 273

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762 148 SLNP---TVLTTMAIFSAAIGGWMGLNQTQIRKIMAFSSISHLGWMAI-ILTYDPK------LTLLNFYLyslmtaavFL 217
Cdd:CHL00049 274 FSSNewhLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIgIIVGDSNdgyasmITYMLFYI--------FM 345

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 461489762 218 TLNTIKVLNLSTLMTA----------WTKTPSLNAMLLLTLLSLAGLPPLTGFLPK 263
Cdd:CHL00049 346 NLGTFACIVLFGLRTGtdnirdyaglYTKDPFLALSLALCLLSLGGIPPLAGFFGK 401
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 49-192 5.58e-10

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 60.48  E-value: 5.58e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762  49 HPRAIEAATKYFLTQAAASALVLFASMTNAWHTGQW--DITQLTH-----PTSCLILTS---AISMKLGLVPFHFWFPEV 118
Cdd:COG1008  156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAaplplTAQLLLFLAffiAFAVKVPMFPFHTWLPDA 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762 119 LQ-----GSPLITGLLLST--------AMKLPPLTLLYMTspslnpTVLTTMAIFSAAIGGWMGLNQTQIRKIMAFSSIS 185
Cdd:COG1008  236 HVeaptaGSVLLAGVLLKMggygllrfALPLFPEASAYFA------PLLAALGVIGIIYGALVALAQTDLKRLIAYSSVS 309


                 ....*..
gi 461489762 186 HLGWMAI 192
Cdd:COG1008  310 HMGFVLL 316
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-195 7.07e-10

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 60.06  E-value: 7.07e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762  50 PRAIEAATKYFLTQAAASALVLF-ASMTNAWHTGQwdiTQL--------THPTSCLILT-----SAISMKLGLVPFHFWF 115
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGS---TQLsaialaliTSPSLGLALAlvfviAGIAFKISAVPFHQWT 233

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762 116 PEVLQGSPLITGLLLSTAMKLP----PLTLLYMTSPSLNP---TVLTTMAIFSAAIGGWMGLNQTQIRKIMAFSSISHLG 188
Cdd:PRK02504 234 PDVYEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPSFDEqwkLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAG 313


                 ....*..
gi 461489762 189 WMAIILT 195
Cdd:PRK02504 314 FVMIGLV 320
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-266 7.15e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 57.03  E-value: 7.15e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762  33 LEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLFA---------SMTNAWHTGQWDITQLTHPTSCL-ILTSA 101
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGiallygqygTLNMAYLAVKMSENPTVVAKIALaLFIAG 229

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762 102 ISMKLGLVPFHFWFPEVLQGSPL-ITGLLL-STAMKLPPL--TLLYMTSPSLNPT----VLTTMAIFSAAIGGWMGLNQT 173
Cdd:PRK08376 230 LAMKSGAVPVHMWLPDAYPAAPSsISAMLLvIKQAGLYALarVLFSIYGPAINLAtvgwVIIILGCLTMFVGVAMAVVQK 309

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762 174 QIRKIMAFSSISHLGWM------AIILTYDPKLT----------LLNFYLYSLMTAAVFLT----LNTIKVLNLSTLMTA 233
Cdd:PRK08376 310 DVKRLLAYHSVSQIGYMllglgvGLAALGDPAMAsygeialaggIYHIVNHALYKALLFLTagavIYETGTRNLNELGGL 389

                        250       260       270
                 ....*....|....*....|....*....|...
gi 461489762 234 WTKTPSLNAMLLLTLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK08376 390 ARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-192 1.74e-07

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 52.63  E-value: 1.74e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762   50 PRAIEAATKYFLTQAAASALVLFASMTNAWHTGQW----DITQLTHPTSC-----LILTSAISMKLGLVPFHFWFPEV-- 118
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGTfdllELLNLPLPFGVqtwlfLAFFIAFAVKVPLFPLHTWLPDAhv 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762  119 ---LQGSPLITGLLLSTA---MKLPPLTLLYMTSPSLNPtVLTTMAIFSAAIGGWMGLNQTQIRKIMAFSSISHLGWMAI 192
Cdd:TIGR01972 232 eapTAGSVILAGVLLKMGtygFLRFNLPLFPDASLYFAP-VLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLL 310
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 2-275 1.21e-06

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 50.00  E-value: 1.21e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762   2 NPQAKLIFIISLALGTTITISSNHWVLAWTGLEINTLAILPLISKSHHpRAIEAATKYFLTQAAASALVLFASMTNAWHT 81
Cdd:PRK08668  96 NDAYFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKT 174

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762  82 GQWDIT-------QLTHPTSCLI----LTSAISMKLGLVPFHFWFPEVLQGSPL--------------ITGLLLSTAMkL 136
Cdd:PRK08668 175 GTFDFAdisqgliNDTSTGFALIvflfLLAFGVAKAGIFPLHVWAPDAYSEAPQsfsavlsgqlsklgAYGFLLVLYV-L 253

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762 137 PPLTLL-----YMTSPSLNpTVLTTMAIFSAAIGGWMGLNQTQIRKIMAFSSISHLGWMAIILTYDPKLTL-------LN 204
Cdd:PRK08668 254 PGTKLFsefgtYRGVPLFN-YILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFagglfhvFN 332

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 461489762 205 FYLYS----LMTAAVFLTLNTIKVLNLSTLmtAWtKTPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDM 275
Cdd:PRK08668 333 HALFKglffLIFAAVIYRTGTTKISEMGGL--IE-KMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGM 404
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 23-194 1.98e-06

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 49.38  E-value: 1.98e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762  23 SNHWVLAWTGLEINTLAILPLISKSHH-PRAIEAATKYFLTQAAASALVLFASMTNAWHTGQWDITQLTH---------- 91
Cdd:COG1009  130 SDNLLLLFVFWELVGLCSYLLIGFWYEkPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELLAaaptilsspl 209

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762  92 --PTSCLILTSAISmKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKLPPLTLLYMTSP--SLNPTVLTTMAI---FSAAI 164
Cdd:COG1009  210 ltLILLLLLLGAFG-KSAQFPLHFWLPDAMEGPTPVSALLHAATMVKAGVYLLARLSPlfALSPVWLTVVAIigaITALF 288

                        170       180       190
                 ....*....|....*....|....*....|
gi 461489762 165 GGWMGLNQTQIRKIMAFSSISHLGWMAIIL 194
Cdd:COG1009  289 AALIALAQTDIKRVLAYSTVSQLGYMFLAL 318
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 96-263 2.57e-06

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 49.15  E-value: 2.57e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762  96 LILTSAISmKLGLVPFHFWFPEVLQGSPLITGLLLSTAM---------KLPPLtllYMTSPSLNPTVLTtMAIFSAAIGG 166
Cdd:PRK12644 208 LILVGALS-KSAIVPFHFWLPGAMAAPTPVSAYLHAAAMvkagiylvaRLAPG---FADVPVWRPTVLV-LGLATMLLGG 282

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762 167 WMGLNQTQIRKIMAFSSISHLGWMAIIL---TYDPKLTLLNFYL-YSLMTAAVFLTLNTIK-------VLNLSTLmtaWT 235
Cdd:PRK12644 283 WRALRQHDLKLILAYGTVSQLGFLTVLVgigTRDAALAGLAMLLaHALFKAALFLVVGIIDhstgtrdIRKLSGL---GR 359

                        170       180
                 ....*....|....*....|....*...
gi 461489762 236 KTPSLNAMLLLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12644 360 RQPVLAVVAALAAASMAGLPPLLGFVAK 387
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 295-340 2.67e-06

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 43.79  E-value: 2.67e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 461489762  295 RLAYCTTITLPPHTTNHMKQWHINKPTN-PMIAILTTLSITLLPIAP 340
Cdd:pfam06444   5 RLSYSTTLTLFPNTNNSKMKWRFNSTKNtLLLPTLTTLSILLLPLTP 51
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-282 1.24e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 46.80  E-value: 1.24e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762  33 LEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFA-SMTNAwHTGQWDITQL--------THPTSCLILTSAIS 103
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvGLLYG-VTGTLNMADLagalaenpTVVTAFGFVLLALA 213

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762 104 MKLGLVPFHFWFPEVLQG-SPLITGLLLSTAMKLP--PLTLLY--------MTSPSLNpTVLTTMAIFSAAIGGWMGLNQ 172
Cdd:PRK08375 214 LKAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAvyALIRIYftvfggdfRFALGLG-WLLAVLALLSMLVGSLAALGQ 292

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762 173 TQIRKIMAFSSISHLGWMAIILTYDPKLTLLN--FYL--YSLMTAAVFLTLNTIKVL----NLSTLMTAWTKTPSLNAML 244
Cdd:PRK08375 293 DDVKRVLAYSTVSQMGYILLGLALLTPLALAAglLHLlhHALMKGALFLAAGAIEVTygtrRLSELSGLGRRMPLTAAAF 372

                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 461489762 245 LLTLLSLAGLPPLTGFLPKWLIIQELTKQDMATAATVI 282
Cdd:PRK08375 373 AVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVL 410
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 13-192 1.67e-05

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 46.29  E-value: 1.67e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762  13 LALGTTITISSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAA------SALVLFASMTNAWHTGQWDI 86
Cdd:PRK08676 111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762  87 TQLTHPTSCL----ILTSAISM------KLGLVPFHFWFPEVLQGSP-LITGLLLSTAMKLPPLTLLYMTS-------PS 148
Cdd:PRK08676 191 TELAAHASLLspsvLGASFLFIfigflaKSGLVPFHTWLPAAYAKAPsVVSALLSGTVLNIGIYGILRLSAllrqsgaAE 270

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 461489762 149 LNPTVLTTMAIFSAAIGGWMGLNQTQIRKIMAFSSISHLGWMAI 192
Cdd:PRK08676 271 QFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLL 314
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
52-190 5.50e-05

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 45.01  E-value: 5.50e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762  52 AIEAATKYFLTQAAASALVLFASMTNAWHTGQWDITQLTHPTSCLILTSAISMKLGLV----------------PFHFWF 115
Cdd:PRK07376 171 AADAAQKAFVVNRVGDFGLLLGILGLFWATGSFDFDGIADRLSELVSSGAVSGWLALLlcilvflgpmaksaqfPLHVWL 250

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762 116 PEVLQGSPLITGLLLSTAMKLPPLTLLYMTSP--SLNPTVLTTMAI---FSAAIGGWMGLNQTQIRKIMAFSSISHLGWM 190
Cdd:PRK07376 251 PDAMEGPTPISALIHAATMVAAGVFLVARMYPvfEQFPAVMTVIAWtgaITAFLGASIALTQNDIKKGLAYSTISQLGYM 330
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 50-192 6.10e-05

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 44.81  E-value: 6.10e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762  50 PRAIEAATKYFLTQAAASALVLFASMTNAWH----TGQWDITQLTH---PTSCLILT-----SAISMKLGLVPFHFWFPE 117
Cdd:PRK05846 157 KNRIYAATKFFLYTLLGSLLMLVAIIYLVVVyynaTGTFDIADLLNlplPPGVQYWLflaffIAFAVKMPMFPLHTWLPD 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762 118 VLQ-----GSPLITGLLLSTA--------MKLPPLTLLYMTspslnpTVLTTMAIFSAAIGGWMGLNQTQIRKIMAFSSI 184
Cdd:PRK05846 237 AHVqaptaGSVLLAGILLKMGaygllrfsLPLFPDASHEFA------PIIITLGVIAIIYGALVALAQTDIKKLIAYSSI 310


                 ....*...
gi 461489762 185 SHLGWMAI 192
Cdd:PRK05846 311 SHMGFVTL 318
PRK12650 PRK12650
DUF4040 family protein;
80-190 7.49e-05

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 44.65  E-value: 7.49e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762  80 HTGQW-DITQLTHPTSCLILTSAISmKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKLPPLTLLYMTSPSL--NPT---V 153
Cdd:PRK12650 196 HSDVWaEKPGLTTVVAVLIAVAAFT-KSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFhdVAVwnwL 274

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 461489762 154 LTTMAIFSAAIGGWMGLNQTQIRKIMAFSSISHLGWM 190
Cdd:PRK12650 275 LIIVGMITALMGAVFAVQKTDLKKLTAYSTVSQLGWI 311
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 20-192 1.43e-04

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 43.38  E-value: 1.43e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762  20 TISSNHWVLAWTGLEINTLAILPLISKSHHPRAIEAATKYF---------------LTQAAASALVLFASMTNAW----- 79
Cdd:PRK06458 124 ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIiicsvgvafalfgtiLVYANAATVMGDGEMAILWtellk 203

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762  80 HTGQWDiTQLTHPTSCLILTsAISMKLGLVPFHFWFPEVLQGSP-----LITGLLLSTAMkLPPLTLLYMTSPSLNP--- 151
Cdd:PRK06458 204 HASLLD-PTLMKLAFVFLLI-GFGTKVGLFPMHAWLPDAHSEAPspvsaLLSGVLLNVAL-YAVLRYYILIDAAIGSdfp 280

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 461489762 152 -TVLTTMAIFSAAIGGWMGLNQTQIRKIMAFSSISHLGWMAI 192
Cdd:PRK06458 281 gRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAF 322
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 48-196 2.50e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 42.89  E-value: 2.50e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762  48 HHPRAIEAATKYFLTQAAASALVLFASMTNAWHTGQWDITQLTHPTS---------------CLILTSAISmKLGLVPFH 112
Cdd:PRK12649 156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSElienikghplflitlILIFIGAAA-KSAQGPFY 234

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762 113 FWFPEVLQGSPLITGLLLSTAMKLPPLTLLYMTSPSLNPT-----VLTTMAIFSAAIGGWMGLNQTQIRKIMAFSSISHL 187
Cdd:PRK12649 235 IWLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQL 314


                 ....*....
gi 461489762 188 GWMAIILTY 196
Cdd:PRK12649 315 AYLMTMYGY 323
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
55-190 2.66e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 42.76  E-value: 2.66e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762  55 AATKYFLTQAAASALVLFASMTNAWHTG-------QWDITQLTHPTSCLILTS---AISMKLGLVPFHFWFPEV-LQGSP 123
Cdd:PRK06473 158 AATKFLLYTAISGILILVSFLGLVWLSGassfdyePLRSHTLPLSTQLLLLAPilvGFGIKIPLVPFHTWLPDAhVEAST 237

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 461489762 124 LITGLLLSTAMKLPPLTLL------YMTSPSLNPTVLTTMAIFSAAIGGWMGLNQTQIRKIMAFSSISHLGWM 190
Cdd:PRK06473 238 PVSVLLAGVLLKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYI 310
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-189 2.67e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 42.63  E-value: 2.67e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762  33 LEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFASMTNAWHTGQWDITQLTH--PTSCLILTSAISMKLGLVP 110
Cdd:PRK07234 123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATadPEAFALIALGLLVKGGIFV 202

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762 111 FHFWFPEVLQGSPLITGLLLSTAM---KLPPLTLLYMTSPSLNPtVLTTMAIFSAAIGGWMGLNQTQIRKIMAFSSISHL 187
Cdd:PRK07234 203 SGLWLPLTHSEAEPPVSALLSGVVvkaGVFPLVRCALDVPGLDL-IVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQL 281


                 ..
gi 461489762 188 GW 189
Cdd:PRK07234 282 GF 283
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 103-271 4.49e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 42.25  E-value: 4.49e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762 103 SMKLGLvpfHFWFPEVLQGSPLITGLLLSTAMKLPPLTLLYMTSPSLN--PTVLTTMAIF---SAAIGGWMGLNQTQIRK 177
Cdd:MTH00032 239 SAQLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSFPLFEkaPLTLLIITIFgalTAFFAATVGLVQNDLKK 315

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762 178 IMAFSSISHLGWMAIILTYDPKLTLLNFYL--YSLMTAAVFLTLN------TIKVLNLSTLMTAWTKTPSLNAMLLLTLL 249
Cdd:MTH00032 316 VIAYSTCSQLGYMVLIIGIEGSHNVGLFHLvnHAFFKALLFLSAGsvihstTVDEQDMRKMGGLIHSIPFTYTMMLIGSF 395

                        170       180
                 ....*....|....*....|..
gi 461489762 250 SLAGLPPLTGFLPKWLIIqELT 271
Cdd:MTH00032 396 SIMGLPYLTGFYSKDLIL-ELT 416
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
92-268 4.90e-04

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 41.86  E-value: 4.90e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762  92 PTSCLILTSAISMKLGLVPFhFWFPEVLQGSPLITGLLLSTAMK-------LPPLTLLYMTSPSLNPTVLTTMAIFSAAI 164
Cdd:PRK12663 207 TTIALLFLLAFGMKAALFPF-MWLPAAYHTPNTEVAALFAALLTkvgiyalIRVFTLLFPQERELLHPLLATMAAITMVI 285

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762 165 GGWMGLNQTQIRKIMAFSSISHLGWMAIILTYDPKLTLLN--FYLYSLMT--AAVFLTLNTIKVL----NLSTLMTAWTK 236
Cdd:PRK12663 286 GALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGINGaiFYLVHDMVvkTALFLIAGSLVRLtgyrSLQYLGGLYRK 365

                        170       180       190
                 ....*....|....*....|....*....|..
gi 461489762 237 TPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK12663 366 EPLFGALFLILIFAIGGLPPFSGFWGKVLLVQ 397
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 28-192 6.33e-04

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 41.56  E-value: 6.33e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762  28 LAWtglEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFASMTNAWHTGQ--WDITQLTH---PTSCLILTS-- 100
Cdd:PRK12561 114 LMW---ELELVPVYLLISIWGGQKRLYAATKFILYTALASIFILVAGLALALSGDTftFDLAELGAksyPLALELLLYag 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762 101 ---AISMKLGLVPFHFWFPEV-----LQGSPLITGLLLSTA--------MKLPPLTLLYMtSPslnptVLTTMAIFSAAI 164
Cdd:PRK12561 191 fliAFGVKLPIFPLHTWLPDAhgeasAPVSMILAGVLLKMGgyalirfnVQMLPDAHVYF-AP-----ALAILGVVNIIY 264

                        170       180
                 ....*....|....*....|....*...
gi 461489762 165 GGWMGLNQTQIRKIMAFSSISHLGWMAI 192
Cdd:PRK12561 265 GALNAFAQDNVKRRLAYSSVSHMGFVLL 292
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
55-268 7.72e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 41.24  E-value: 7.72e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762  55 AATKYFLTQAAASALVLFASMTNAWHTGQWD------ITQ-LTHPTSCLILTSAI---SMKLGLVPFHFWFPEV-LQGSP 123
Cdd:PRK07363 158 ASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSfdydaiSTQnLSLNTQLILLTGLLlgfGIKIPLVPLHTWLPDAyTEASP 237

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762 124 LITGLLLSTAMKLPPLTL------LYMTSPSLNPTVLTTMAIFSAAIGGWMGLNQTQIRKIMAFSSISHLGWMAIILTYD 197
Cdd:PRK07363 238 AVAILLGGVLAKLGTYGLlrfglqLFPQTWSLVAPGLAIIGTISVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAAG 317

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762 198 PKLTLL----NFYLYSLMTAAVFLTLNTIK---------VLNlsTLMTAWTKTPSLNAMLLLTLLSLAGLPPLTGFLPKW 264
Cdd:PRK07363 318 TQLSLLgavaQMISHGLILALLFHLVGIVErkvgtrdldVLN--GLMNPIRGLPLTSALLVLAGMASAGIPGLVGFVAEF 395


                 ....
gi 461489762 265 LIIQ 268
Cdd:PRK07363 396 IVFQ 399
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 109-283 8.02e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 41.44  E-value: 8.02e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762 109 VPFHFWFPEVLQGSPLITGLLLSTAMKLPPLTLLYMTSPSLNPTVL--TTMAIFSAA---IGGWMGLNQTQIRKIMAFSS 183
Cdd:PRK12647 212 FPFHFWLPNAMEAPTPVSAYLHSATMVKAGIYLLARLNPVLGGTPLwqTILPLFGGLtmlTGALLAVRQTDLKLILAYST 291

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762 184 ISHLGWMAIILTYDPKLTLLNFYLY----SLMTAAVFLTLNTIK-------VLNLSTLmtaWTKTPSLNAMLLLTLLSLA 252
Cdd:PRK12647 292 VSALGTLVMLLGLGSELAIKAAVLFlvahSLYKGALFMVAGIIDhetgtrdITKLGGL---RRAMPITAAAALLAALSMA 368

                        170       180       190
                 ....*....|....*....|....*....|....*
gi 461489762 253 GLPPLTGFLPKWLIIQELTKQDMA----TAATVIA 283
Cdd:PRK12647 369 GLPPLFGFLAKELIYEALLEAPLWslilTVAAVLG 403
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-267 9.74e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 40.87  E-value: 9.74e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762  33 LEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFA-----SMTNAWHTGqwDITQLTHP--------TSCLILT 99
Cdd:PRK12662 139 LEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGigflyAITGTLNMG--DMFLIIQDlptnraiqIGVLFIM 216

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762 100 SAISMKLGLVPFHFWFPEVLQGSPLITGLLLS-TAMKLPPLTL-----------LYMTSPSLNpTVLTTMAIFSAAIGGW 167
Cdd:PRK12662 217 VGLFIKAALFPFHKWLIQAYSEAPSFISVFFSgTSTKVMIYLIirivydvfkanFVFTTLPFN-NVFMILAALAIVFGSV 295

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762 168 MGLNQTQIRKIMAFSSISHLGWMAIILTYDPKLTLLNFYLY----SLMTAAVFLTLNTIK----VLNLSTLMTAWTKTPS 239
Cdd:PRK12662 296 LAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFMVSGSISyhfgTTKLEDCLNLWKSMPK 375

                        250       260
                 ....*....|....*....|....*...
gi 461489762 240 LNAMLLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:PRK12662 376 ITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 101-194 1.60e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 40.29  E-value: 1.60e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762 101 AISMKLGLVPFHFWFPEV-----LQGSPLITGLLLstamKLPPLTLLYMTSP-------SLNPTVLtTMAIFSAAIGGWM 168
Cdd:MTH00226 239 AMAVKIPIFPFHIWLPKAhveapVAGSVLLAGILL----KLGGYGLVRLSWPilplgaqNLAPAVI-AMGIVGIVYGSFA 313

                         90       100
                 ....*....|....*....|....*.
gi 461489762 169 GLNQTQIRKIMAFSSISHLGWMAIIL 194
Cdd:MTH00226 314 TCRQIDVKRLVAYSSVAHMGLVSITL 339
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
34-268 2.40e-03

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 39.63  E-value: 2.40e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762  34 EINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFASMTNAWHTGQWDITQ-----LTHPTSCLILTSAISMKLGL 108
Cdd:PRK06277 130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDihnalLVNPTSPVIYGGLLLLIFGL 209

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762 109 V------PFHFWFPEVLQGS-PLITGLLLS------TAMKLPPLTLLYMTS--PSLNpTVLTTMAIFSAAIGGWMGLNQT 173
Cdd:PRK06277 210 LygsglpPFHTIKSDIYAKAkPFGSALLQTfskfvlVALMLVIFKLFGGLSyfPSAQ-GVLIALSVLAMVFGVVMALLQT 288

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762 174 QIRKIMAFSSISHLGWMAIILTYDPKLTL-------LNFYLYslmTAAVFLTLNTI----KVLNLSTLMTAWTKTPSLNA 242
Cdd:PRK06277 289 DYKRLLAYHAISQGGYVAAGLALGTPLGIvagifhaINHVIY---KSALFLGAGIVsyrtKTSNLRKLGGLLPVMPVVAF 365

                        250       260
                 ....*....|....*....|....*.
gi 461489762 243 MLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK06277 366 MVLCAKLAISGVPPFNGFQSKLMLAQ 391
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 55-270 4.88e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 38.94  E-value: 4.88e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762  55 AATKYFLTQAAASALVLFASMTNAWHTGQWDITQLTHPT-----SCLILTSAISMKLGLVPFHFWFPEVLQGSP-----L 124
Cdd:PRK08667 163 AGIFYFVMTQLSTVFLMLGIIVLFIQTGSFELSPLGASAgilslVFLLLFLGFGIKAGIIPFHKWLPYAHPASPsnvsaL 242

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762 125 ITGLLLSTAMKLPPLTLLYMTSPSLNPTVLT-TMAIFSAAIGGWMGLNQTQIRKIMAFSSISHLG--WMAIILTYDPKLT 201
Cdd:PRK08667 243 MSGVMLKVAVYGLVRFLMDVLSPELWWGVLIlLAGSISALLGVIYALKEHDLKGLLAYSSIENIGiiLMGIGLYVIFGVY 322

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 461489762 202 LLNFYLYSLMTAAVFLTLNTIKVLNL------STLMTAWTKT-----------PSLNAMLLLTLLSLAGLPPLTGFLPKW 264
Cdd:PRK08667 323 GLDTLALLALGGALFHSLNHALFKSLlfltagSVVHATGTRNiekmgglvklmPYTSALFLVGAVSIAALPPFNGFASEL 402


                 ....*.
gi 461489762 265 LIIQEL 270
Cdd:PRK08667 403 LLYESF 408
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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