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Conserved domains on  [gi|508124228|gb|AGN11448|]
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GroEL, partial [Bacillus subtilis]

Protein Classification

TCP-1/cpn60 chaperonin family protein( domain architecture ID 16)

TCP-1/cpn60 chaperonin family protein similar to mycobacterial 60 kDa chaperonin (GroEL) that together with its co-chaperonin GroES, plays an essential role in assisting protein folding

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
chaperonin_like super family cl02777
chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They ...
1-246 1.30e-172

chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.


The actual alignment was detected with superfamily member PRK00013:

Pssm-ID: 351886  Cd Length: 542  Bit Score: 486.17  E-value: 1.30e-172
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228   1 GPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDAFENMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGA 80
Cdd:PRK00013  31 GPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDPFENMGAQLVKEVASKTNDVAGDGTTTATVLAQAIVREGLKNVAAGA 110
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228  81 NPVGVRKGMEQAVAVAIENLKEISKPIEGKESIAQVAAISA-ADEEVGSLIAEAMERVGNDGVITIKESKGFTTELEVVE 159
Cdd:PRK00013 111 NPMDLKRGIDKAVEAAVEELKKISKPVEDKEEIAQVATISAnGDEEIGKLIAEAMEKVGKEGVITVEESKGFETELEVVE 190
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228 160 GMQFDRGYASPYMVTDSDKMEAVLDNPYILITDKKITNIQEILPVLEQVVQQGKPLLLIAEDVEGEALATLVVNKLRGTF 239
Cdd:PRK00013 191 GMQFDRGYLSPYFVTDPEKMEAELENPYILITDKKISNIQDLLPVLEQVAQSGKPLLIIAEDVEGEALATLVVNKLRGTL 270

                 ....*..
gi 508124228 240 NVAALRA 246
Cdd:PRK00013 271 KVVAVKA 277
 
Name Accession Description Interval E-value
groEL PRK00013
chaperonin GroEL; Reviewed
1-246 1.30e-172

chaperonin GroEL; Reviewed


Pssm-ID: 234573  Cd Length: 542  Bit Score: 486.17  E-value: 1.30e-172
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228   1 GPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDAFENMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGA 80
Cdd:PRK00013  31 GPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDPFENMGAQLVKEVASKTNDVAGDGTTTATVLAQAIVREGLKNVAAGA 110
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228  81 NPVGVRKGMEQAVAVAIENLKEISKPIEGKESIAQVAAISA-ADEEVGSLIAEAMERVGNDGVITIKESKGFTTELEVVE 159
Cdd:PRK00013 111 NPMDLKRGIDKAVEAAVEELKKISKPVEDKEEIAQVATISAnGDEEIGKLIAEAMEKVGKEGVITVEESKGFETELEVVE 190
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228 160 GMQFDRGYASPYMVTDSDKMEAVLDNPYILITDKKITNIQEILPVLEQVVQQGKPLLLIAEDVEGEALATLVVNKLRGTF 239
Cdd:PRK00013 191 GMQFDRGYLSPYFVTDPEKMEAELENPYILITDKKISNIQDLLPVLEQVAQSGKPLLIIAEDVEGEALATLVVNKLRGTL 270

                 ....*..
gi 508124228 240 NVAALRA 246
Cdd:PRK00013 271 KVVAVKA 277
GroEL cd03344
GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They ...
1-246 3.40e-156

GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.


Pssm-ID: 239460  Cd Length: 520  Bit Score: 443.82  E-value: 3.40e-156
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228   1 GPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDAFENMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGA 80
Cdd:cd03344   29 GPKGRNVVIEKSFGSPKITKDGVTVAKEIELEDPFENMGAQLVKEVASKTNDVAGDGTTTATVLARAIIKEGLKAVAAGA 108
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228  81 NPVGVRKGMEQAVAVAIENLKEISKPIEGKESIAQVAAISA-ADEEVGSLIAEAMERVGNDGVITIKESKGFTTELEVVE 159
Cdd:cd03344  109 NPMDLKRGIEKAVEAVVEELKKLSKPVKTKEEIAQVATISAnGDEEIGELIAEAMEKVGKDGVITVEEGKTLETELEVVE 188
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228 160 GMQFDRGYASPYMVTDSDKMEAVLDNPYILITDKKITNIQEILPVLEQVVQQGKPLLLIAEDVEGEALATLVVNKLRGTF 239
Cdd:cd03344  189 GMQFDRGYLSPYFVTDPEKMEVELENPYILLTDKKISSIQELLPILELVAKAGRPLLIIAEDVEGEALATLVVNKLRGGL 268

                 ....*..
gi 508124228 240 NVAALRA 246
Cdd:cd03344  269 KVCAVKA 275
GroEL TIGR02348
chaperonin GroL; This family consists of GroEL, the larger subunit of the GroEL/GroES ...
1-246 1.37e-151

chaperonin GroL; This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of pfam00118. [Protein fate, Protein folding and stabilization]


Pssm-ID: 274089  Cd Length: 524  Bit Score: 432.10  E-value: 1.37e-151
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228    1 GPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDAFENMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGA 80
Cdd:TIGR02348  30 GPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDKFENMGAQLVKEVASKTNDVAGDGTTTATVLAQAIVKEGLKNVAAGA 109
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228   81 NPVGVRKGMEQAVAVAIENLKEISKPIEGKESIAQVAAISA-ADEEVGSLIAEAMERVGNDGVITIKESKGFTTELEVVE 159
Cdd:TIGR02348 110 NPIELKRGIEKAVEAVVEELKKLSKPVKGKKEIAQVATISAnNDEEIGSLIAEAMEKVGKDGVITVEESKSLETELEVVE 189
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228  160 GMQFDRGYASPYMVTDSDKMEAVLDNPYILITDKKITNIQEILPVLEQVVQQGKPLLLIAEDVEGEALATLVVNKLRGTF 239
Cdd:TIGR02348 190 GMQFDRGYISPYFVTDAEKMEVELENPYILITDKKISNIKDLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGTL 269

                  ....*..
gi 508124228  240 NVAALRA 246
Cdd:TIGR02348 270 NVCAVKA 276
GroEL COG0459
Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]; ...
1-246 7.69e-149

Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440227  Cd Length: 497  Bit Score: 424.11  E-value: 7.69e-149
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228   1 GPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDAFENMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGA 80
Cdd:COG0459   31 GPKGRNVMLVKSFGDPTITNDGVTIAKEIELEDPFENMGAQLVKEVASKTNDEAGDGTTTATVLAGALLKEGLKLVAAGA 110
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228  81 NPVGVRKGMEQAVAVAIENLKEISKPIEGKESIAQVAAISAA-DEEVGSLIAEAMERVGNDGVITIKESKGFTTELEVVE 159
Cdd:COG0459  111 NPTDIKRGIDKAVEKAVEELKKIAKPVDDKEELAQVATISANgDEEIGELIAEAMEKVGKDGVITVEEGKGLETELEVVE 190
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228 160 GMQFDRGYASPYMVTDSDKMEAVLDNPYILITDKKITNIQEILPVLEQVVQQGKPLLLIAEDVEGEALATLVVNKLRGTF 239
Cdd:COG0459  191 GMQFDKGYLSPYFVTDPEKMPAELENAYILLTDKKISSIQDLLPLLEKVAQSGKPLLIIAEDIDGEALATLVVNGIRGVL 270

                 ....*..
gi 508124228 240 NVAALRA 246
Cdd:COG0459  271 RVVAVKA 277
Cpn60_TCP1 pfam00118
TCP-1/cpn60 chaperonin family; This family includes members from the HSP60 chaperone family ...
1-241 7.45e-44

TCP-1/cpn60 chaperonin family; This family includes members from the HSP60 chaperone family and the TCP-1 (T-complex protein) family.


Pssm-ID: 395068 [Multi-domain]  Cd Length: 489  Bit Score: 153.90  E-value: 7.45e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228    1 GPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDAfenmGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGA 80
Cdd:pfam00118  10 GPKGMDKMLVNSGGDVTVTNDGATILKELEIQHP----AAKLLVEAAKAQDEEVGDGTTTVVVLAGELLEEAEKLLAAGV 85
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228   81 NPVGVRKGMEQAVAVAIENLKE---ISKPIEGKESIAQVAAISAA-------DEEVGSLIAEAMER---------VGNDG 141
Cdd:pfam00118  86 HPTTIIEGYEKALEKALEILDSiisIPVEDVDREDLLKVARTSLSskiisreSDFLAKLVVDAVLAipkndgsfdLGNIG 165
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228  142 VITIKESKGftTELEVVEGMQFDRGYASPYMVTDsdkmeavLDNPYILITDKKITNIQE--------------------- 200
Cdd:pfam00118 166 VVKILGGSL--EDSELVDGVVLDKGPLHPDMPKR-------LENAKVLLLNCSLEYEKTetkatvvlsdaeqlerflkae 236
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 508124228  201 ---ILPVLEQVVQQGKPLLLIAEDVEGEALATLVVNKLRGTFNV 241
Cdd:pfam00118 237 eeqILEIVEKIIDSGVNVVVCQKGIDDLALHFLAKNGIMALRRV 280
thermosome_beta NF041083
thermosome subunit beta;
1-172 1.48e-17

thermosome subunit beta;


Pssm-ID: 469010  Cd Length: 519  Bit Score: 81.15  E-value: 1.48e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228   1 GPKGRNVVLEKKFGSPLITNDGVTIAKEIELedafENMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGA 80
Cdd:NF041083  38 GPKGMDKMLVDSLGDIVITNDGATILKEMDV----QHPAAKMLVEVAKTQDDEVGDGTTTAVVLAGELLKKAEELLDQNI 113
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228  81 NPVGVRKGMEQAVAVAIENLKEISKPI--EGKESIAQVA-------AISAADEEVGSLIAEAMERVGN----------DG 141
Cdd:NF041083 114 HPTIIANGYRLAAEKAIEILDEIAEKVdpDDRETLKKIAetsltskGVEEARDYLAEIAVKAVKQVAEkrdgkyyvdlDN 193
                        170       180       190
                 ....*....|....*....|....*....|.
gi 508124228 142 VITIKESKGFTTELEVVEGMQFDRGYASPYM 172
Cdd:NF041083 194 IQIEKKHGGSIEDTQLIYGIVIDKEVVHPGM 224
thermosome_alpha NF041082
thermosome subunit alpha;
1-172 1.27e-16

thermosome subunit alpha;


Pssm-ID: 469009  Cd Length: 518  Bit Score: 78.39  E-value: 1.27e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228   1 GPKGRNVVLEKKFGSPLITNDGVTIAKEIELedafENMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGA 80
Cdd:NF041082  38 GPKGMDKMLVDSLGDVVITNDGVTILKEMDI----EHPAAKMIVEVAKTQDDEVGDGTTTAVVLAGELLKKAEELLDQDI 113
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228  81 NPVGVRKGMEQAVAVAIENLKEISKPI--EGKESIAQVAA-------ISAADEEVGSLIAEA----MERVGNDGV----I 143
Cdd:NF041082 114 HPTIIAEGYRLAAEKALEILDEIAIKVdpDDKETLKKIAAtamtgkgAEAAKDKLADLVVDAvkavAEKDGGYNVdldnI 193
                        170       180       190
                 ....*....|....*....|....*....|
gi 508124228 144 TI-KESKGFTTELEVVEGMQFDRGYASPYM 172
Cdd:NF041082 194 KVeKKVGGSIEDSELVEGVVIDKERVHPGM 223
 
Name Accession Description Interval E-value
groEL PRK00013
chaperonin GroEL; Reviewed
1-246 1.30e-172

chaperonin GroEL; Reviewed


Pssm-ID: 234573  Cd Length: 542  Bit Score: 486.17  E-value: 1.30e-172
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228   1 GPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDAFENMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGA 80
Cdd:PRK00013  31 GPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDPFENMGAQLVKEVASKTNDVAGDGTTTATVLAQAIVREGLKNVAAGA 110
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228  81 NPVGVRKGMEQAVAVAIENLKEISKPIEGKESIAQVAAISA-ADEEVGSLIAEAMERVGNDGVITIKESKGFTTELEVVE 159
Cdd:PRK00013 111 NPMDLKRGIDKAVEAAVEELKKISKPVEDKEEIAQVATISAnGDEEIGKLIAEAMEKVGKEGVITVEESKGFETELEVVE 190
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228 160 GMQFDRGYASPYMVTDSDKMEAVLDNPYILITDKKITNIQEILPVLEQVVQQGKPLLLIAEDVEGEALATLVVNKLRGTF 239
Cdd:PRK00013 191 GMQFDRGYLSPYFVTDPEKMEAELENPYILITDKKISNIQDLLPVLEQVAQSGKPLLIIAEDVEGEALATLVVNKLRGTL 270

                 ....*..
gi 508124228 240 NVAALRA 246
Cdd:PRK00013 271 KVVAVKA 277
GroEL cd03344
GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They ...
1-246 3.40e-156

GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.


Pssm-ID: 239460  Cd Length: 520  Bit Score: 443.82  E-value: 3.40e-156
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228   1 GPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDAFENMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGA 80
Cdd:cd03344   29 GPKGRNVVIEKSFGSPKITKDGVTVAKEIELEDPFENMGAQLVKEVASKTNDVAGDGTTTATVLARAIIKEGLKAVAAGA 108
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228  81 NPVGVRKGMEQAVAVAIENLKEISKPIEGKESIAQVAAISA-ADEEVGSLIAEAMERVGNDGVITIKESKGFTTELEVVE 159
Cdd:cd03344  109 NPMDLKRGIEKAVEAVVEELKKLSKPVKTKEEIAQVATISAnGDEEIGELIAEAMEKVGKDGVITVEEGKTLETELEVVE 188
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228 160 GMQFDRGYASPYMVTDSDKMEAVLDNPYILITDKKITNIQEILPVLEQVVQQGKPLLLIAEDVEGEALATLVVNKLRGTF 239
Cdd:cd03344  189 GMQFDRGYLSPYFVTDPEKMEVELENPYILLTDKKISSIQELLPILELVAKAGRPLLIIAEDVEGEALATLVVNKLRGGL 268

                 ....*..
gi 508124228 240 NVAALRA 246
Cdd:cd03344  269 KVCAVKA 275
groEL PRK12849
chaperonin GroEL; Reviewed
1-246 2.49e-152

chaperonin GroEL; Reviewed


Pssm-ID: 237230  Cd Length: 542  Bit Score: 434.62  E-value: 2.49e-152
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228   1 GPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDAFENMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGA 80
Cdd:PRK12849  31 GPKGRNVVIDKSFGAPTITKDGVSIAKEIELEDPFENLGAQLVKEVASKTNDVAGDGTTTATVLAQALVQEGLKNVAAGA 110
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228  81 NPVGVRKGMEQAVAVAIENLKEISKPIEGKESIAQVAAISA-ADEEVGSLIAEAMERVGNDGVITIKESKGFTTELEVVE 159
Cdd:PRK12849 111 NPMDLKRGIDKAVEAVVEELKALARPVSGSEEIAQVATISAnGDEEIGELIAEAMEKVGKDGVITVEESKTLETELEVTE 190
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228 160 GMQFDRGYASPYMVTDSDKMEAVLDNPYILITDKKITNIQEILPVLEQVVQQGKPLLLIAEDVEGEALATLVVNKLRGTF 239
Cdd:PRK12849 191 GMQFDRGYLSPYFVTDPERMEAVLEDPLILLTDKKISSLQDLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGGL 270

                 ....*..
gi 508124228 240 NVAALRA 246
Cdd:PRK12849 271 KVAAVKA 277
GroEL TIGR02348
chaperonin GroL; This family consists of GroEL, the larger subunit of the GroEL/GroES ...
1-246 1.37e-151

chaperonin GroL; This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of pfam00118. [Protein fate, Protein folding and stabilization]


Pssm-ID: 274089  Cd Length: 524  Bit Score: 432.10  E-value: 1.37e-151
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228    1 GPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDAFENMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGA 80
Cdd:TIGR02348  30 GPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDKFENMGAQLVKEVASKTNDVAGDGTTTATVLAQAIVKEGLKNVAAGA 109
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228   81 NPVGVRKGMEQAVAVAIENLKEISKPIEGKESIAQVAAISA-ADEEVGSLIAEAMERVGNDGVITIKESKGFTTELEVVE 159
Cdd:TIGR02348 110 NPIELKRGIEKAVEAVVEELKKLSKPVKGKKEIAQVATISAnNDEEIGSLIAEAMEKVGKDGVITVEESKSLETELEVVE 189
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228  160 GMQFDRGYASPYMVTDSDKMEAVLDNPYILITDKKITNIQEILPVLEQVVQQGKPLLLIAEDVEGEALATLVVNKLRGTF 239
Cdd:TIGR02348 190 GMQFDRGYISPYFVTDAEKMEVELENPYILITDKKISNIKDLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGTL 269

                  ....*..
gi 508124228  240 NVAALRA 246
Cdd:TIGR02348 270 NVCAVKA 276
GroEL COG0459
Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]; ...
1-246 7.69e-149

Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440227  Cd Length: 497  Bit Score: 424.11  E-value: 7.69e-149
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228   1 GPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDAFENMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGA 80
Cdd:COG0459   31 GPKGRNVMLVKSFGDPTITNDGVTIAKEIELEDPFENMGAQLVKEVASKTNDEAGDGTTTATVLAGALLKEGLKLVAAGA 110
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228  81 NPVGVRKGMEQAVAVAIENLKEISKPIEGKESIAQVAAISAA-DEEVGSLIAEAMERVGNDGVITIKESKGFTTELEVVE 159
Cdd:COG0459  111 NPTDIKRGIDKAVEKAVEELKKIAKPVDDKEELAQVATISANgDEEIGELIAEAMEKVGKDGVITVEEGKGLETELEVVE 190
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228 160 GMQFDRGYASPYMVTDSDKMEAVLDNPYILITDKKITNIQEILPVLEQVVQQGKPLLLIAEDVEGEALATLVVNKLRGTF 239
Cdd:COG0459  191 GMQFDKGYLSPYFVTDPEKMPAELENAYILLTDKKISSIQDLLPLLEKVAQSGKPLLIIAEDIDGEALATLVVNGIRGVL 270

                 ....*..
gi 508124228 240 NVAALRA 246
Cdd:COG0459  271 RVVAVKA 277
groEL PRK12850
chaperonin GroEL; Reviewed
1-246 2.73e-139

chaperonin GroEL; Reviewed


Pssm-ID: 237231  Cd Length: 544  Bit Score: 401.79  E-value: 2.73e-139
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228   1 GPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDAFENMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGA 80
Cdd:PRK12850  32 GPKGRNVVLEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVKEVASKTNDLAGDGTTTATVLAQAIVREGAKLVAAGM 111
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228  81 NPVGVRKGMEQAVAVAIENLKEISKPIEGKESIAQVAAISA-ADEEVGSLIAEAMERVGNDGVITIKESKGFTTELEVVE 159
Cdd:PRK12850 112 NPMDLKRGIDLAVAAVVDELKKIAKKVTSSKEIAQVATISAnGDESIGEMIAEAMDKVGKEGVITVEEAKTLGTELDVVE 191
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228 160 GMQFDRGYASPYMVTDSDKMEAVLDNPYILITDKKITNIQEILPVLEQVVQQGKPLLLIAEDVEGEALATLVVNKLRGTF 239
Cdd:PRK12850 192 GMQFDRGYLSPYFVTNPEKMRAELEDPYILLHEKKISNLQDLLPILEAVVQSGRPLLIIAEDVEGEALATLVVNKLRGGL 271

                 ....*..
gi 508124228 240 NVAALRA 246
Cdd:PRK12850 272 KSVAVKA 278
groEL CHL00093
chaperonin GroEL
1-246 2.19e-128

chaperonin GroEL


Pssm-ID: 177025  Cd Length: 529  Bit Score: 373.29  E-value: 2.19e-128
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228   1 GPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDAFENMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGA 80
Cdd:CHL00093  31 GPKGRNVVLEKKYGSPQIVNDGVTIAKEIELEDHIENTGVALIRQAASKTNDVAGDGTTTATVLAYAIVKQGMKNVAAGA 110
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228  81 NPVGVRKGMEQAVAVAIENLKEISKPIEGKESIAQVAAISAA-DEEVGSLIAEAMERVGNDGVITIKESKGFTTELEVVE 159
Cdd:CHL00093 111 NPISLKRGIEKATQYVVSQIAEYARPVEDIQAITQVASISAGnDEEVGSMIADAIEKVGREGVISLEEGKSTVTELEITE 190
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228 160 GMQFDRGYASPYMVTDSDKMEAVLDNPYILITDKKITNI-QEILPVLEQVVQQGKPLLLIAEDVEGEALATLVVNKLRGT 238
Cdd:CHL00093 191 GMRFEKGFISPYFVTDTERMEVVQENPYILLTDKKITLVqQDLLPILEQVTKTKRPLLIIAEDVEKEALATLVLNKLRGI 270

                 ....*...
gi 508124228 239 FNVAALRA 246
Cdd:CHL00093 271 VNVVAVRA 278
groEL PRK12851
chaperonin GroEL; Reviewed
1-246 4.64e-128

chaperonin GroEL; Reviewed


Pssm-ID: 171770  Cd Length: 541  Bit Score: 372.92  E-value: 4.64e-128
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228   1 GPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDAFENMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGA 80
Cdd:PRK12851  32 GPKGRNVVIDKSFGAPTITNDGVTIAKEIELEDKFENMGAQMVREVASKTNDVAGDGTTTATVLAQAIVREGAKAVAAGA 111
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228  81 NPVGVRKGMEQAVAVAIENLKEISKPIEGKESIAQVAAISA-ADEEVGSLIAEAMERVGNDGVITIKESKGFTTELEVVE 159
Cdd:PRK12851 112 NPMDLKRGIDRAVAAVVEELKANARPVTTNAEIAQVATISAnGDAEIGRLVAEAMEKVGNEGVITVEESKTAETELEVVE 191
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228 160 GMQFDRGYASPYMVTDSDKMEAVLDNPYILITDKKITNIQEILPVLEQVVQQGKPLLLIAEDVEGEALATLVVNKLRGTF 239
Cdd:PRK12851 192 GMQFDRGYLSPYFVTDADKMEAELEDPYILIHEKKISNLQDLLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGGL 271

                 ....*..
gi 508124228 240 NVAALRA 246
Cdd:PRK12851 272 KVAAVKA 278
PTZ00114 PTZ00114
Heat shock protein 60; Provisional
1-246 6.16e-120

Heat shock protein 60; Provisional


Pssm-ID: 185455  Cd Length: 555  Bit Score: 352.68  E-value: 6.16e-120
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228   1 GPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDAFENMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGA 80
Cdd:PTZ00114  43 GPKGRNVIIEQEYGSPKITKDGVTVAKAIEFSDRFENVGAQLIRQVASKTNDKAGDGTTTATILARAIFREGCKAVAAGL 122
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228  81 NPVGVRKGMEQAVAVAIENLKEISKPIEGKESIAQVAAISA-ADEEVGSLIAEAMERVGNDGVITIKESKGFTTELEVVE 159
Cdd:PTZ00114 123 NPMDLKRGIDLAVKVVLESLKEQSRPVKTKEDILNVATISAnGDVEIGSLIADAMDKVGKDGTITVEDGKTLEDELEVVE 202
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228 160 GMQFDRGYASPYMVTDSDKMEAVLDNPYILITDKKITNIQEILPVLEQVVQQGKPLLLIAEDVEGEALATLVVNKLRGTF 239
Cdd:PTZ00114 203 GMSFDRGYISPYFVTNEKTQKVELENPLILVTDKKISSIQSILPILEHAVKNKRPLLIIAEDVEGEALQTLIINKLRGGL 282

                 ....*..
gi 508124228 240 NVAALRA 246
Cdd:PTZ00114 283 KVCAVKA 289
groEL PRK12852
chaperonin GroEL; Reviewed
1-246 3.07e-116

chaperonin GroEL; Reviewed


Pssm-ID: 237232  Cd Length: 545  Bit Score: 342.98  E-value: 3.07e-116
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228   1 GPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDAFENMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGA 80
Cdd:PRK12852  32 GPKGRNVVIEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKTNDLAGDGTTTATVLAQAIVREGAKAVAAGM 111
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228  81 NPVGVRKGMEQAVAVAIENLKEISKPIEGKESIAQVAAISA-ADEEVGSLIAEAMERVGNDGVITIKESKGFTTELEVVE 159
Cdd:PRK12852 112 NPMDLKRGIDIAVAAVVKDIEKRAKPVASSAEIAQVGTISAnGDAAIGKMIAQAMQKVGNEGVITVEENKSLETEVDIVE 191
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228 160 GMQFDRGYASPYMVTDSDKMEAVLDNPYILITDKKITNIQEILPVLEQVVQQGKPLLLIAEDVEGEALATLVVNKLRGTF 239
Cdd:PRK12852 192 GMKFDRGYLSPYFVTNAEKMTVELDDAYILLHEKKLSGLQAMLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNRLRGGL 271

                 ....*..
gi 508124228 240 NVAALRA 246
Cdd:PRK12852 272 KVAAVKA 278
PRK14104 PRK14104
chaperonin GroEL; Provisional
1-246 5.14e-100

chaperonin GroEL; Provisional


Pssm-ID: 172594  Cd Length: 546  Bit Score: 301.56  E-value: 5.14e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228   1 GPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDAFENMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGA 80
Cdd:PRK14104  32 GPKGRNVVLDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKSADAAGDGTTTATVLAQAIVREGAKSVAAGM 111
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228  81 NPVGVRKGMEQAVAVAIENLKEISKPIEGKESIAQVAAISA-ADEEVGSLIAEAMERVGNDGVITIKESKGFTTELEVVE 159
Cdd:PRK14104 112 NPMDLKRGIDLAVEAVVADLVKNSKKVTSNDEIAQVGTISAnGDAEIGKFLADAMKKVGNEGVITVEEAKSLETELDVVE 191
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228 160 GMQFDRGYASPYMVTDSDKMEAVLDNPYILITDKKITNIQEILPVLEQVVQQGKPLLLIAEDVEGEALATLVVNKLRGTF 239
Cdd:PRK14104 192 GMQFDRGYISPYFVTNADKMRVEMDDAYILINEKKLSSLNELLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGL 271

                 ....*..
gi 508124228 240 NVAALRA 246
Cdd:PRK14104 272 KVAAVKA 278
PLN03167 PLN03167
Chaperonin-60 beta subunit; Provisional
1-246 9.57e-96

Chaperonin-60 beta subunit; Provisional


Pssm-ID: 215611 [Multi-domain]  Cd Length: 600  Bit Score: 292.21  E-value: 9.57e-96
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228   1 GPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDAFENMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGA 80
Cdd:PLN03167  87 GPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGA 166
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228  81 NPVGVRKGMEQAVAVAIENLKEISKPIEGKEsIAQVAAISAADE-EVGSLIAEAMERVGNDGVITIKESKGFTTELEVVE 159
Cdd:PLN03167 167 NPVQITRGIEKTAKALVKELKKMSKEVEDSE-LADVAAVSAGNNyEVGNMIAEAMSKVGRKGVVTLEEGKSAENNLYVVE 245
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228 160 GMQFDRGYASPYMVTDSDKMEAVLDNPYILITDKKITNIQEILPVLEQVVQQGKPLLLIAEDVEGEALATLVVNKLRGTF 239
Cdd:PLN03167 246 GMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDKKITNARDLIGILEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGSL 325

                 ....*..
gi 508124228 240 NVAALRA 246
Cdd:PLN03167 326 KIAALKA 332
chaperonin_type_I_II cd00309
chaperonin families, type I and type II. Chaperonins are involved in productive folding of ...
1-246 6.43e-75

chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.


Pssm-ID: 238189  Cd Length: 464  Bit Score: 234.63  E-value: 6.43e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228   1 GPKGRNVVLEKKFGSPLITNDGVTIAKEIELEdafeNMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGA 80
Cdd:cd00309   29 GPKGMDKMLVDSLGDPTITNDGATILKEIEVE----HPAAKLLVEVAKSQDDEVGDGTTTVVVLAGELLKEAEKLLAAGI 104
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228  81 NPVGVRKGMEQAVAVAIENLKEISKPIE--GKESIAQVAAISAA-------DEEVGSLIAEAMERVG------NDGVITI 145
Cdd:cd00309  105 HPTEIIRGYEKAVEKALEILKEIAVPIDveDREELLKVATTSLNsklvsggDDFLGELVVDAVLKVGkengdvDLGVIRV 184
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228 146 KESKGFT-TELEVVEGMQFDRGYASPYmvtdsdkMEAVLDNPYILITDKKitniqeilpvLEQVVqqgkplllIAED-VE 223
Cdd:cd00309  185 EKKKGGSlEDSELVVGMVFDKGYLSPY-------MPKRLENAKILLLDCK----------LEYVV--------IAEKgID 239
                        250       260
                 ....*....|....*....|...
gi 508124228 224 GEALATLVVNklrgtfNVAALRA 246
Cdd:cd00309  240 DEALHYLAKL------GIMAVRR 256
Cpn60_TCP1 pfam00118
TCP-1/cpn60 chaperonin family; This family includes members from the HSP60 chaperone family ...
1-241 7.45e-44

TCP-1/cpn60 chaperonin family; This family includes members from the HSP60 chaperone family and the TCP-1 (T-complex protein) family.


Pssm-ID: 395068 [Multi-domain]  Cd Length: 489  Bit Score: 153.90  E-value: 7.45e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228    1 GPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDAfenmGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGA 80
Cdd:pfam00118  10 GPKGMDKMLVNSGGDVTVTNDGATILKELEIQHP----AAKLLVEAAKAQDEEVGDGTTTVVVLAGELLEEAEKLLAAGV 85
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228   81 NPVGVRKGMEQAVAVAIENLKE---ISKPIEGKESIAQVAAISAA-------DEEVGSLIAEAMER---------VGNDG 141
Cdd:pfam00118  86 HPTTIIEGYEKALEKALEILDSiisIPVEDVDREDLLKVARTSLSskiisreSDFLAKLVVDAVLAipkndgsfdLGNIG 165
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228  142 VITIKESKGftTELEVVEGMQFDRGYASPYMVTDsdkmeavLDNPYILITDKKITNIQE--------------------- 200
Cdd:pfam00118 166 VVKILGGSL--EDSELVDGVVLDKGPLHPDMPKR-------LENAKVLLLNCSLEYEKTetkatvvlsdaeqlerflkae 236
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 508124228  201 ---ILPVLEQVVQQGKPLLLIAEDVEGEALATLVVNKLRGTFNV 241
Cdd:pfam00118 237 eeqILEIVEKIIDSGVNVVVCQKGIDDLALHFLAKNGIMALRRV 280
chaperonin_like cd03333
chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They ...
110-246 1.49e-19

chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.


Pssm-ID: 239449 [Multi-domain]  Cd Length: 209  Bit Score: 83.67  E-value: 1.49e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228 110 KESIAQVAAISAA------DEEVGSLIAEAMERVG------NDGVITIKESKGFT-TELEVVEGMQFDRGYASPYmvtds 176
Cdd:cd03333    1 RELLLQVATTSLNsklsswDDFLGKLVVDAVLKVGpdnrmdDLGVIKVEKIPGGSlEDSELVVGVVFDKGYASPY----- 75
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 508124228 177 dkMEAVLDNPYILITDKKitniqeilpvLEQVVqqgkplllIAED-VEGEALATLVVNklrgtfNVAALRA 246
Cdd:cd03333   76 --MPKRLENAKILLLDCP----------LEYVV--------IAEKgIDDLALHYLAKA------GIMAVRR 120
thermosome_beta NF041083
thermosome subunit beta;
1-172 1.48e-17

thermosome subunit beta;


Pssm-ID: 469010  Cd Length: 519  Bit Score: 81.15  E-value: 1.48e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228   1 GPKGRNVVLEKKFGSPLITNDGVTIAKEIELedafENMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGA 80
Cdd:NF041083  38 GPKGMDKMLVDSLGDIVITNDGATILKEMDV----QHPAAKMLVEVAKTQDDEVGDGTTTAVVLAGELLKKAEELLDQNI 113
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228  81 NPVGVRKGMEQAVAVAIENLKEISKPI--EGKESIAQVA-------AISAADEEVGSLIAEAMERVGN----------DG 141
Cdd:NF041083 114 HPTIIANGYRLAAEKAIEILDEIAEKVdpDDRETLKKIAetsltskGVEEARDYLAEIAVKAVKQVAEkrdgkyyvdlDN 193
                        170       180       190
                 ....*....|....*....|....*....|.
gi 508124228 142 VITIKESKGFTTELEVVEGMQFDRGYASPYM 172
Cdd:NF041083 194 IQIEKKHGGSIEDTQLIYGIVIDKEVVHPGM 224
chap_CCT_epsi TIGR02343
T-complex protein 1, epsilon subunit; Members of this family, all eukaryotic, are part of the ...
1-160 1.09e-16

T-complex protein 1, epsilon subunit; Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.


Pssm-ID: 274084 [Multi-domain]  Cd Length: 532  Bit Score: 78.69  E-value: 1.09e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228    1 GPKGRNVVLEKKFGSPLITNDGVTIAKEIELEdafeNMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGA 80
Cdd:TIGR02343  48 GPKGMDKMLISPDGDITVTNDGATILSQMDVD----NQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEQAEELLDKGI 123
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228   81 NPVGVRKGMEQAVAVAIENLKEISKPIEGKESIAQvAAISAADEEVGSLIA----EAMERVGNDGVITI--KESKGFTTE 154
Cdd:TIGR02343 124 HPIKIADGFEEAARIAVEHLEEISDEISADNNNRE-PLIQAAKTSLGSKIVskchRRFAEIAVDAVLNVadMERRDVDFD 202

                  ....*.
gi 508124228  155 LEVVEG 160
Cdd:TIGR02343 203 LIKVEG 208
thermosome_alpha NF041082
thermosome subunit alpha;
1-172 1.27e-16

thermosome subunit alpha;


Pssm-ID: 469009  Cd Length: 518  Bit Score: 78.39  E-value: 1.27e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228   1 GPKGRNVVLEKKFGSPLITNDGVTIAKEIELedafENMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGA 80
Cdd:NF041082  38 GPKGMDKMLVDSLGDVVITNDGVTILKEMDI----EHPAAKMIVEVAKTQDDEVGDGTTTAVVLAGELLKKAEELLDQDI 113
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228  81 NPVGVRKGMEQAVAVAIENLKEISKPI--EGKESIAQVAA-------ISAADEEVGSLIAEA----MERVGNDGV----I 143
Cdd:NF041082 114 HPTIIAEGYRLAAEKALEILDEIAIKVdpDDKETLKKIAAtamtgkgAEAAKDKLADLVVDAvkavAEKDGGYNVdldnI 193
                        170       180       190
                 ....*....|....*....|....*....|
gi 508124228 144 TI-KESKGFTTELEVVEGMQFDRGYASPYM 172
Cdd:NF041082 194 KVeKKVGGSIEDSELVEGVVIDKERVHPGM 223
cpn60 cd03343
cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They ...
1-132 2.36e-14

cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.


Pssm-ID: 239459 [Multi-domain]  Cd Length: 517  Bit Score: 71.91  E-value: 2.36e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228   1 GPKGRNVVLEKKFGSPLITNDGVTIAKEIELEdafeNMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGA 80
Cdd:cd03343   36 GPKGMDKMLVDSLGDVTITNDGATILKEMDIE----HPAAKMLVEVAKTQDEEVGDGTTTAVVLAGELLEKAEDLLDQNI 111
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 508124228  81 NPVGVRKGMEQAVAVAIENLKEISKPIEGKE-----SIAQVAAISAADEEVGSLIAE 132
Cdd:cd03343  112 HPTVIIEGYRLAAEKALELLDEIAIKVDPDDkdtlrKIAKTSLTGKGAEAAKDKLAD 168
TCP1_epsilon cd03339
TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved ...
1-160 4.36e-14

TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.


Pssm-ID: 239455  Cd Length: 526  Bit Score: 71.18  E-value: 4.36e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228   1 GPKGRNVVLEKKFGSPLITNDGVTIAKEIELEdafeNMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGA 80
Cdd:cd03339   44 GPRGMDKILVSPDGEVTVTNDGATILEKMDVD----HQIAKLLVELSKSQDDEIGDGTTGVVVLAGALLEQAEKLLDRGI 119
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228  81 NPVGVRKGMEQAVAVAIENLKEISKPIE----GKESIAQVAAISaadeeVGSLIA----EAMERVGNDGVITI--KESKG 150
Cdd:cd03339  120 HPIRIADGYEQACKIAVEHLEEIADKIEfspdNKEPLIQTAMTS-----LGSKIVsrchRQFAEIAVDAVLSVadLERKD 194
                        170
                 ....*....|
gi 508124228 151 FTTELEVVEG 160
Cdd:cd03339  195 VNFELIKVEG 204
TCP1_delta cd03338
TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved ...
1-120 2.52e-13

TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.


Pssm-ID: 239454 [Multi-domain]  Cd Length: 515  Bit Score: 68.85  E-value: 2.52e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228   1 GPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDAfenmGAKLVAEVaSKTNDV-AGDGTTTATVLAQAMIREGLKNVTAG 79
Cdd:cd03338   29 GPRGMDKMIQTGKGEVIITNDGATILKQMSVLHP----AAKMLVEL-SKAQDIeAGDGTTSVVVLAGALLSACESLLKKG 103
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 508124228  80 ANPVGVRKGMEQAVAVAIENLKEISKPIE--GKESIAQVAAIS 120
Cdd:cd03338  104 IHPTVISESFQIAAKKAVEILDSMSIPVDlnDRESLIKSATTS 146
PTZ00212 PTZ00212
T-complex protein 1 subunit beta; Provisional
1-104 3.47e-12

T-complex protein 1 subunit beta; Provisional


Pssm-ID: 185514  Cd Length: 533  Bit Score: 65.43  E-value: 3.47e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228   1 GPKGRNVVLEK-----KFGSPLITNDGVTIAKEIELEdafeNMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKN 75
Cdd:PTZ00212  43 GPKGMDKILQPmsegpRSGNVTVTNDGATILKSVWLD----NPAAKILVDISKTQDEEVGDGTTSVVVLAGELLREAEKL 118
                         90       100
                 ....*....|....*....|....*....
gi 508124228  76 VTAGANPVGVRKGMEQAVAVAIENLKEIS 104
Cdd:PTZ00212 119 LDQKIHPQTIIEGWRMALDVARKALEEIA 147
TCP1_beta cd03336
TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in ...
1-104 6.56e-11

TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.


Pssm-ID: 239452 [Multi-domain]  Cd Length: 517  Bit Score: 61.58  E-value: 6.56e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228   1 GPKGRNVVLE--KKFGSPLITNDGVTIAKEIELEdafeNMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTA 78
Cdd:cd03336   34 GPKGMDKILQsvGRSGGVTVTNDGATILKSIGVD----NPAAKVLVDISKVQDDEVGDGTTSVTVLAAELLREAEKLVAQ 109
                         90       100
                 ....*....|....*....|....*.
gi 508124228  79 GANPVGVRKGMEQAVAVAIENLKEIS 104
Cdd:cd03336  110 KIHPQTIIEGYRMATAAAREALLSSA 135
chap_CCT_delta TIGR02342
T-complex protein 1, delta subunit; Members of this family, all eukaryotic, are part of the ...
1-149 1.41e-10

T-complex protein 1, delta subunit; Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.


Pssm-ID: 274083  Cd Length: 517  Bit Score: 60.57  E-value: 1.41e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228    1 GPKGRNVVLEKKFGSPLITNDGVTIAKEIELEdafeNMGAKLVAEVaSKTNDV-AGDGTTTATVLAQAMIREGLKNVTAG 79
Cdd:TIGR02342  30 GPKGMDKMIQDGKGEVIITNDGATILKQMAVL----HPAAKMLVEL-SKAQDIeAGDGTTSVVILAGALLGACERLLNKG 104
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 508124228   80 ANPVGVRKGMEQAVAVAIENLKEISKPIEGKESIAQV-AAISAADEEVGSLIAEAMERVGNDGVITIKESK 149
Cdd:TIGR02342 105 IHPTIISESFQSAADEAIKILDEMSIPVDLSDREQLLkSATTSLSSKVVSQYSSLLAPLAVDAVLKVIDPE 175
chap_CCT_eta TIGR02345
T-complex protein 1, eta subunit; Members of this family, all eukaryotic, are part of the ...
1-120 3.41e-10

T-complex protein 1, eta subunit; Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.


Pssm-ID: 274086 [Multi-domain]  Cd Length: 523  Bit Score: 59.39  E-value: 3.41e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228    1 GPKGRNVVLEKKFGSPLITNDGVTIAKEIELedafENMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGA 80
Cdd:TIGR02345  39 GPRGMDKLIVGSNGKATISNDGATILKLLDI----VHPAAKTLVDIAKSQDAEVGDGTTSVTILAGELLKEAKPFIEEGV 114
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 508124228   81 NPVGVRKGMEQAVAVAIENLKEISKPI-----EGKESIAQVAAIS 120
Cdd:TIGR02345 115 HPQLIIRCYREALSLAVEKIKEIAVTIdeekgEQRELLEKCAATA 159
TCP1_eta cd03340
TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in ...
1-110 5.29e-10

TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.


Pssm-ID: 239456 [Multi-domain]  Cd Length: 522  Bit Score: 58.84  E-value: 5.29e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228   1 GPKGRNVVLEKKFGSPLITNDGVTIAKEIELEdafeNMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGA 80
Cdd:cd03340   37 GPRGMDKLIVDGRGKVTISNDGATILKLLDIV----HPAAKTLVDIAKSQDAEVGDGTTSVVVLAGEFLKEAKPFIEDGV 112
                         90       100       110
                 ....*....|....*....|....*....|
gi 508124228  81 NPVGVRKGMEQAVAVAIENLKEISKPIEGK 110
Cdd:cd03340  113 HPQIIIRGYRKALQLAIEKIKEIAVNIDKE 142
chap_CCT_beta TIGR02341
T-complex protein 1, beta subunit; Members of this family, all eukaryotic, are part of the ...
1-104 1.99e-09

T-complex protein 1, beta subunit; Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.


Pssm-ID: 274082  Cd Length: 519  Bit Score: 57.18  E-value: 1.99e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228    1 GPKGRNVVLEK--KFGSPLITNDGVTIAKEIeledAFENMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTA 78
Cdd:TIGR02341  35 GPKGMDKILQSssSDASIMVTNDGATILKSI----GVDNPAAKVLVDMSKVQDDEVGDGTTSVTVLAAELLREAEKLINQ 110
                          90       100
                  ....*....|....*....|....*.
gi 508124228   79 GANPVGVRKGMEQAVAVAIENLKEIS 104
Cdd:TIGR02341 111 KIHPQTIIAGYREATKAARDALLKSA 136
TCP1_alpha cd03335
TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved ...
1-137 3.11e-08

TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.


Pssm-ID: 239451  Cd Length: 527  Bit Score: 53.44  E-value: 3.11e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228   1 GPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDAfenmGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGA 80
Cdd:cd03335   29 GPVGLDKMLVDDIGDVTITNDGATILKLLEVEHP----AAKILVELAQLQDKEVGDGTTSVVIIAAELLKRANELVKQKI 104
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 508124228  81 NPVGVRKGMEQAVAVAIENLKE-ISKPIE--GKESIAQVAA-------ISAADEEVGSLIAEAMERV 137
Cdd:cd03335  105 HPTTIISGYRLACKEAVKYIKEhLSISVDnlGKESLINVAKtsmsskiIGADSDFFANMVVDAILAV 171
TCP1_zeta cd03342
TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in ...
1-191 3.96e-08

TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.


Pssm-ID: 239458 [Multi-domain]  Cd Length: 484  Bit Score: 53.42  E-value: 3.96e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228   1 GPKGRNVVLEKKFGSPLITNDGVTIAKEIEledaFENMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGA 80
Cdd:cd03342   33 GPKGTLKMLVSGAGDIKLTKDGNVLLSEMQ----IQHPTASMIARAATAQDDITGDGTTSNVLLIGELLKQAERYIQEGV 108
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228  81 NPVGVRKGMEQAVAVAIENLKEISKPIE---GKESIAQVAAISaADEEVGSLIAEAMERVGNDGVITIKESKGFtTELEV 157
Cdd:cd03342  109 HPRIITEGFELAKNKALKFLESFKVPVEidtDRELLLSVARTS-LRTKLHADLADQLTEIVVDAVLAIYKPDEP-IDLHM 186
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 508124228 158 VEGMQFDRGYASPY-----MVTD----SDKMEAVLDNPYILIT 191
Cdd:cd03342  187 VEIMQMQHKSDSDTklirgLVLDhgarHPDMPKRVENAYILTC 229
TCP1_gamma cd03337
TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved ...
1-192 5.31e-08

TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.


Pssm-ID: 239453 [Multi-domain]  Cd Length: 480  Bit Score: 53.07  E-value: 5.31e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228   1 GPKGRNVVLEKKFGSPLITNDGVTIAKEIELEdafeNMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGA 80
Cdd:cd03337   37 GPRAMLKMLLDPMGGIVLTNDGNAILREIDVA----HPAAKSMIELSRTQDEEVGDGTTSVIILAGEILAVAEPFLERGI 112
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228  81 NPVGVRKGMEQAVAVAIENLKEISKPI--EGKESIAQV-------AAISAADEEVGSLIAEAMERVG---NDGVITI--- 145
Cdd:cd03337  113 HPTVIIKAYRKALEDALKILEEISIPVdvNDRAQMLKIikscigtKFVSRWSDLMCNLALDAVKTVAveeNGRKKEIdik 192
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 508124228 146 ------KESKGFTTELEVVEGMQFDRGYASPymvtdsdKMEAVLDNPYILITD 192
Cdd:cd03337  193 ryakveKIPGGEIEDSRVLDGVMLNKDVTHP-------KMRRRIENPRIVLLD 238
chap_CCT_alpha TIGR02340
T-complex protein 1, alpha subunit; Members of this family, all eukaryotic, are part of the ...
1-137 1.37e-07

T-complex protein 1, alpha subunit; Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.


Pssm-ID: 274081 [Multi-domain]  Cd Length: 536  Bit Score: 51.64  E-value: 1.37e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228    1 GPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDAfenmGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGA 80
Cdd:TIGR02340  33 GPVGLDKMLVDDIGDVTITNDGATILKLLEVEHP----AAKILVELAQLQDREVGDGTTSVVIIAAELLKRADELVKNKI 108
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 508124228   81 NPVGVRKGMEQAVAVAIENLKE-ISKPIE--GKESIAQVAA-------ISAADEEVGSLIAEAMERV 137
Cdd:TIGR02340 109 HPTSVISGYRLACKEAVKYIKEnLSVSVDelGREALINVAKtsmsskiIGLDSDFFSNIVVDAVLAV 175
TCP1_theta cd03341
TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved ...
1-119 1.38e-07

TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.


Pssm-ID: 239457 [Multi-domain]  Cd Length: 472  Bit Score: 51.45  E-value: 1.38e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228   1 GPKGRN--VV--LEKKFgsplITNDGVTIAKEIEledaFENMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNV 76
Cdd:cd03341   29 GPNGMNkmVInhLEKLF----VTSDAATILRELE----VQHPAAKLLVMASQMQEEEIGDGTNLVVVLAGELLEKAEELL 100
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 508124228  77 TAGANPVGVRKGMEQAVAVAIENLKEIS-KPIEGKESIAQVAAI 119
Cdd:cd03341  101 RMGLHPSEIIEGYEKALKKALEILEELVvYKIEDLRNKEEVSKA 144
chap_CCT_theta TIGR02346
T-complex protein 1, theta subunit; Members of this family, all eukaryotic, are part of the ...
1-165 1.59e-07

T-complex protein 1, theta subunit; Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.


Pssm-ID: 274087 [Multi-domain]  Cd Length: 531  Bit Score: 51.64  E-value: 1.59e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228    1 GPKGRNVV----LEKKFgsplITNDGVTIAKEIELEdafeNMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNV 76
Cdd:TIGR02346  39 GPNGMNKMvinhLEKLF----VTNDAATILRELEVQ----HPAAKLLVMASEMQENEIGDGTNLVLVLAGELLNKAEELI 110
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228   77 TAGANPVGVRKGMEQAVAVAIENLKEIS----KPIEGKESIAQVAAISAADEEVGS------LIAEAM-----ERVGNDG 141
Cdd:TIGR02346 111 RMGLHPSEIIKGYEMALKKAMEILEELVvwevKDLRDKDELIKALKASISSKQYGNedflaqLVAQACstvlpKNPQNFN 190
                         170       180
                  ....*....|....*....|....*..
gi 508124228  142 VITIKESK---GFTTELEVVEGMQFDR 165
Cdd:TIGR02346 191 VDNIRVCKilgGSLSNSEVLKGMVFNR 217
chap_CCT_gamma TIGR02344
T-complex protein 1, gamma subunit; Members of this family, all eukaryotic, are part of the ...
1-121 1.91e-06

T-complex protein 1, gamma subunit; Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.


Pssm-ID: 274085 [Multi-domain]  Cd Length: 524  Bit Score: 48.20  E-value: 1.91e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228    1 GPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDAfenmGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGA 80
Cdd:TIGR02344  37 GPRSMLKMLLDPMGGIVMTNDGNAILREIDVAHP----AAKSMIELSRTQDEEVGDGTTSVIILAGEMLSVAEPFLEQNI 112
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 508124228   81 NPVGVRKGMEQAVAVAIENLKEISKPIEGKESIAQVAAISA 121
Cdd:TIGR02344 113 HPTVIIRAYRKALDDALSVLEEISIPVDVNDDAAMLKLIQS 153
chap_CCT_zeta TIGR02347
T-complex protein 1, zeta subunit; Members of this family, all eukaryotic, are part of the ...
1-190 6.54e-06

T-complex protein 1, zeta subunit; Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.


Pssm-ID: 274088 [Multi-domain]  Cd Length: 531  Bit Score: 46.65  E-value: 6.54e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228    1 GPKGRNVVLEKKFGSPLITNDGVTIAKEIELEdafeNMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGA 80
Cdd:TIGR02347  37 GPKGTLKMLVSGAGDIKLTKDGNVLLNEMQIQ----HPTASMIARAATAQDDITGDGTTSTVLLIGELLKQAERYILEGV 112
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 508124228   81 NPVGVRKGMEQAVAVAIENLKEISKPIEG---KESIAQVAAiSAADEEVGSLIAEAMERVGNDGVITIKES--------- 148
Cdd:TIGR02347 113 HPRIITEGFEIARKEALQFLDKFKVKKEDevdREFLLNVAR-TSLRTKLPADLADQLTEIVVDAVLAIKKDgedidlfmv 191
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 508124228  149 ------KGFTTELEVVEGMQFDRGYASPYMVTDsdkmeavLDNPYILI 190
Cdd:TIGR02347 192 eimemkHKSATDTTLIRGLVLDHGARHPDMPRR-------VKNAYILT 232
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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