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Conserved domains on  [gi|527498517|gb|AGS15123|]
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cytochrome b, partial (mitochondrion) [Sylvisorex lunaris]

Protein Classification

cytochrome b( domain architecture ID 999999)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-227 9.31e-166

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 461.80  E-value: 9.31e-166
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498517   1 IPYIGTSLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALAGVHLLFLHETGSNNPSGLNSDADKIPFHPYYTIKDILGM 80
Cdd:MTH00100 153 IPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGL 232

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498517  81 LIMIASLSSLVLFTPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILAAIPFLHTAKQ 160
Cdd:MTH00100 233 LLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQ 312

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 527498517 161 RSMMFRPMSQCMFWILVADLLTLTWIGGQPVEHPFVVIGQMASVAYFAMILLIMPMTSIIENRLLKW 227
Cdd:MTH00100 313 RSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLKW 379
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-227 9.31e-166

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 461.80  E-value: 9.31e-166
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498517   1 IPYIGTSLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALAGVHLLFLHETGSNNPSGLNSDADKIPFHPYYTIKDILGM 80
Cdd:MTH00100 153 IPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGL 232

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498517  81 LIMIASLSSLVLFTPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILAAIPFLHTAKQ 160
Cdd:MTH00100 233 LLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQ 312

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 527498517 161 RSMMFRPMSQCMFWILVADLLTLTWIGGQPVEHPFVVIGQMASVAYFAMILLIMPMTSIIENRLLKW 227
Cdd:MTH00100 313 RSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLKW 379
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-221 5.36e-68

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 213.88  E-value: 5.36e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498517   1 IPYIGTSLVEWIWGGFSVDKATLTRFFAFH-FILPFIVAALAGVHLLFLHETGSNNPSG----LNSDADKIPFHPYYTIK 75
Cdd:COG1290  164 IPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVK 243

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498517  76 DILGMLIMIASLSSLVLFTPDmlGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALVLSILILAAIP 153
Cdd:COG1290  244 DGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLP 321

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 527498517 154 FLHTAKQRSMMFRPMSQCMFWILVADLLTLTWIGGQPVehPFVVIGQMASVAYFAMILLIMPMTSIIE 221
Cdd:COG1290  322 FLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 55-202 6.50e-57

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 177.45  E-value: 6.50e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498517  55 NPSGLNSDADKIPFHPYYTIKDILGMLIMIASLSSLVLFTPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIPN 134
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 527498517 135 KLGGVLALVLSILILAAIPFLHTAKQRSmMFRPMSQCMFWILVADLLTLTWIGGQPVEHPFVVIGQMA 202
Cdd:cd00290   81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
106-206 2.26e-48

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 154.17  E-value: 2.26e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498517  106 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILAAIPFLHTAKQRSMMFRPMSQCMFWILVADLLTLTW 185
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 527498517  186 IGGQPVEHPFVVIGQMASVAY 206
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 77-187 8.13e-11

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 58.27  E-value: 8.13e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498517   77 ILGMLIMIASLSSLvlfTPDMLGDPdnyipANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILAAIPFLH 156
Cdd:TIGR01156  44 ILGTIACVVGLAVL---DPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIE 115

                          90       100       110
                  ....*....|....*....|....*....|..
gi 527498517  157 TAKQRSMMF-RPMSQCMFwiLVADLLTLtWIG 187
Cdd:TIGR01156 116 NVNKFQNPFrRPVATTVF--LFGTVVAL-WLG 144
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-227 9.31e-166

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 461.80  E-value: 9.31e-166
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498517   1 IPYIGTSLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALAGVHLLFLHETGSNNPSGLNSDADKIPFHPYYTIKDILGM 80
Cdd:MTH00100 153 IPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGL 232

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498517  81 LIMIASLSSLVLFTPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILAAIPFLHTAKQ 160
Cdd:MTH00100 233 LLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQ 312

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 527498517 161 RSMMFRPMSQCMFWILVADLLTLTWIGGQPVEHPFVVIGQMASVAYFAMILLIMPMTSIIENRLLKW 227
Cdd:MTH00100 313 RSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLKW 379
CYTB MTH00119
cytochrome b; Provisional
 1-227 1.45e-145

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 410.83  E-value: 1.45e-145
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498517   1 IPYIGTSLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALAGVHLLFLHETGSNNPSGLNSDADKIPFHPYYTIKDILGM 80
Cdd:MTH00119 154 IPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGL 233

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498517  81 LIMIASLSSLVLFTPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILAAIPFLHTAKQ 160
Cdd:MTH00119 234 TLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQ 313

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 527498517 161 RSMMFRPMSQCMFWILVADLLTLTWIGGQPVEHPFVVIGQMASVAYFAMILLIMPMTSIIENRLLKW 227
Cdd:MTH00119 314 RSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKMLNY 380
CYTB MTH00131
cytochrome b; Provisional
 1-227 4.02e-142

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 402.11  E-value: 4.02e-142
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498517   1 IPYIGTSLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALAGVHLLFLHETGSNNPSGLNSDADKIPFHPYYTIKDILGM 80
Cdd:MTH00131 153 VPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGF 232

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498517  81 LIMIASLSSLVLFTPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILAAIPFLHTAKQ 160
Cdd:MTH00131 233 AILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQ 312

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 527498517 161 RSMMFRPMSQCMFWILVADLLTLTWIGGQPVEHPFVVIGQMASVAYFAMILLIMPMTSIIENRLLKW 227
Cdd:MTH00131 313 RGLTFRPLTQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKALEW 379
CYTB MTH00074
cytochrome b; Provisional
 1-227 1.24e-136

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 388.27  E-value: 1.24e-136
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498517   1 IPYIGTSLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALAGVHLLFLHETGSNNPSGLNSDADKIPFHPYYTIKDILGM 80
Cdd:MTH00074 154 IPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGF 233

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498517  81 LIMIASLSSLVLFTPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILAAIPFLHTAKQ 160
Cdd:MTH00074 234 LIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQ 313

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 527498517 161 RSMMFRPMSQCMFWILVADLLTLTWIGGQPVEHPFVVIGQMASVAYFAMILLIMPMTSIIENRLLKW 227
Cdd:MTH00074 314 RSLMFRPLTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKLLKW 380
CYTB MTH00191
cytochrome b; Provisional
 1-216 1.74e-128

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 366.93  E-value: 1.74e-128
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498517   1 IPYIGTSLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALAGVHLLFLHETGSNNPSGLNSDADKIPFHPYYTIKDILGM 80
Cdd:MTH00191 150 IPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGF 229

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498517  81 LIMIASLSSLVLFTPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILAAIPFLHTAKQ 160
Cdd:MTH00191 230 FILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQ 309

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 527498517 161 RSMMFRPMSQCMFWILVADLLTLTWIGGQPVEHPFVVIGQMASVAYFAMILLIMPM 216
Cdd:MTH00191 310 RSNTFRPLTQVVFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLLLFPL 365
CYTB MTH00034
cytochrome b; Validated
 1-225 9.14e-122

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 350.55  E-value: 9.14e-122
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498517   1 IPYIGTSLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALAGVHLLFLHETGSNNPSGLNSDADKIPFHPYYTIKDILGM 80
Cdd:MTH00034 153 VPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGF 232

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498517  81 LIMIASLSSLVLFTPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILAAIPFLHTAKQ 160
Cdd:MTH00034 233 LILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNN 312

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 527498517 161 RSMMFRPMSQCMFWILVADLLTLTWIGGQPVEHPFVVIGQMASVAYFAMILLIMPMTSIIENRLL 225
Cdd:MTH00034 313 QSSTFRPLSQIAFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFFFPLISYLENKLI 377
CYTB MTH00156
cytochrome b; Provisional
 1-214 1.02e-119

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 344.46  E-value: 1.02e-119
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498517   1 IPYIGTSLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALAGVHLLFLHETGSNNPSGLNSDADKIPFHPYYTIKDILGM 80
Cdd:MTH00156 143 IPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGF 222

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498517  81 LIMIASLSSLVLFTPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILAAIPFLHTAKQ 160
Cdd:MTH00156 223 IIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKF 302

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 527498517 161 RSMMFRPMSQCMFWILVADLLTLTWIGGQPVEHPFVVIGQMASVAYFAMILLIM 214
Cdd:MTH00156 303 RGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
CYTB MTH00145
cytochrome b; Provisional
 1-225 2.03e-118

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 341.88  E-value: 2.03e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498517   1 IPYIGTSLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALAGVHLLFLHETGSNNPSGLNSDADKIPFHPYYTIKDILGM 80
Cdd:MTH00145 154 IPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGF 233

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498517  81 LIMIASLSSLVLFTPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILAAIPFLHTAKQ 160
Cdd:MTH00145 234 VVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKF 313

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 527498517 161 RSMMFRPMSQCMFWILVADLLTLTWIGGQPVEHPFVVIGQMASVAYFaMILLIMPMTSIIENRLL 225
Cdd:MTH00145 314 RSLSFYPLNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYF-LFFLILPLVQKLWDNIL 377
CYTB MTH00016
cytochrome b; Validated
 1-226 5.14e-110

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 320.47  E-value: 5.14e-110
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498517   1 IPYIGTSLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALAGVHLLFLHETGSNNPSGLNSDADKIPFHPYYTIKDILGM 80
Cdd:MTH00016 154 IPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGF 233

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498517  81 LIMIASLSSLVLFTPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILAAIPFLHTAKQ 160
Cdd:MTH00016 234 IVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKF 313

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 527498517 161 RSMMFRPMSQCMFWILVADLLTLTWIGGQPVEHPFVVIGQMASVAYFaMILLIMPMTSIIENRLLK 226
Cdd:MTH00016 314 RGLSFYPLNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYF-FYFMINPLLMKLWDKLLK 378
CYTB MTH00053
cytochrome b; Provisional
 1-226 3.38e-104

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 305.86  E-value: 3.38e-104
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498517   1 IPYIGTSLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALAGVHLLFLHETGSNNPSGLNSDADKIPFHPYYTIKDILGM 80
Cdd:MTH00053 154 IPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGA 233

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498517  81 LIMIASLSSLVLFTPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILAAIPFLHTAKQ 160
Cdd:MTH00053 234 VILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRF 313

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 527498517 161 RSMMFRPMSQCMFWILVADLLTLTWIGGQPVEHPFVVIGQMASVAYFAMILLIMPMTSIIENRLLK 226
Cdd:MTH00053 314 RGLSFRPLSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLENKLLK 379
CYTB MTH00022
cytochrome b; Validated
 1-226 1.79e-101

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 298.92  E-value: 1.79e-101
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498517   1 IPYIGTSLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALAGVHLLFLHETGSNNPSGLNSDADKIPFHPYYTIKDILGM 80
Cdd:MTH00022 152 IPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGI 231

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498517  81 LIMIASLSSLVLFTPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILAAIPFLHTAKQ 160
Cdd:MTH00022 232 VVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWL 311

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 527498517 161 RSMMFRPMSQCMFWILVADLLTLTWIGGQPVEHPFVVIGQMASVAYFAMILLIMPMTSIIENRLLK 226
Cdd:MTH00022 312 RGLTFRPLGRMAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIPLLGELENQLLF 377
CYTB MTH00224
cytochrome b; Provisional
 1-226 1.10e-94

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 281.81  E-value: 1.10e-94
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498517   1 IPYIGTSLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALAGVHLLFLHETGSNNPSGLNSDADKIPFHPYYTIKDILGM 80
Cdd:MTH00224 154 IPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGY 233

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498517  81 LIMIASLSSLVLFTPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILAAIPFLHTAKQ 160
Cdd:MTH00224 234 LIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNK 313

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 527498517 161 RSMMFRPMSQCMFWILVADLLTLTWIGGQPVEHPFVVIGQMASVAYFAMiLLIMPMTSIIENRLLK 226
Cdd:MTH00224 314 RSLPFYPLNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSY-FIISPAISKLWDDLLN 378
CYTB MTH00033
cytochrome b; Provisional
 1-222 5.67e-69

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 215.96  E-value: 5.67e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498517   1 IPYIGTSLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALAGVHLLFLHETGSNNPSGLNSDADKIPFHPYYTIKDILGM 80
Cdd:MTH00033 150 IPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGF 229

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498517  81 LIMIASLSSLVL--FTPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILAAIPFLHTA 158
Cdd:MTH00033 230 LILFGVFVIIGIepRIETLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRS 309

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 527498517 159 KQRSMMFRPMSQCMFWILVADLLTLTWIGGQPV-EHPFVVIGQMASVAYFAMILLIMPMTSIIEN 222
Cdd:MTH00033 310 KIRSLTFNPTGKFFFWFIVGDFIILTWIGSAPAgADPYVLIGRIATIFYFGYFLVLVPLLGYLSN 374
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-221 5.36e-68

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 213.88  E-value: 5.36e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498517   1 IPYIGTSLVEWIWGGFSVDKATLTRFFAFH-FILPFIVAALAGVHLLFLHETGSNNPSG----LNSDADKIPFHPYYTIK 75
Cdd:COG1290  164 IPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVK 243

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498517  76 DILGMLIMIASLSSLVLFTPDmlGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALVLSILILAAIP 153
Cdd:COG1290  244 DGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLP 321

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 527498517 154 FLHTAKQRSMMFRPMSQCMFWILVADLLTLTWIGGQPVehPFVVIGQMASVAYFAMILLIMPMTSIIE 221
Cdd:COG1290  322 FLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
CYTB MTH00086
cytochrome b; Provisional
 1-214 2.25e-60

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 193.23  E-value: 2.25e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498517   1 IPYIGTSLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALAGVHLLFLHETGSNNPSGLNSDADKIPFHPYYTIKDILGm 80
Cdd:MTH00086 142 IPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYN- 220

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498517  81 LIMIASLSSLVLFTPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILAAIPFLhtaKQ 160
Cdd:MTH00086 221 IIFWLVFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFV---NN 297

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 527498517 161 RSMMFRPMSQCMFWILVADLLTLTWIGGQPVEHPFVVIGQMASVAYFAMILLIM 214
Cdd:MTH00086 298 YTSCLNKLNKFLVFSFIVVNVILSWLGQCLVEYPFLFLSQIFSFIYFFLILLML 351
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 55-202 6.50e-57

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 177.45  E-value: 6.50e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498517  55 NPSGLNSDADKIPFHPYYTIKDILGMLIMIASLSSLVLFTPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIPN 134
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 527498517 135 KLGGVLALVLSILILAAIPFLHTAKQRSmMFRPMSQCMFWILVADLLTLTWIGGQPVEHPFVVIGQMA 202
Cdd:cd00290   81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
CYTB MTH00046
cytochrome b; Validated
 1-212 1.48e-49

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 165.16  E-value: 1.48e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498517   1 IPYIGTSLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALAGVHLLFLHETGSNNP-SGLNSDADKIPFHPYYTIKDILG 79
Cdd:MTH00046 144 VPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPlFSSNGYSDVVYFHSYFTVKDLFL 223

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498517  80 MLIMIASLSSLVLFTPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGvLALVLSILILAAIPflhtAK 159
Cdd:MTH00046 224 FMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG-LVLVLSFLFFLWVP----TF 298

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 527498517 160 QRSMMFRPMSQCMFWILVADLLTLTWIGGQPVEHPFVVIGQMASVAYFAMILL 212
Cdd:MTH00046 299 NGSSVYSVWRQVNFWLIVSLFFSLSYLGGCHPEYPYLLISQLFSVLMVLLLFI 351
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
106-206 2.26e-48

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 154.17  E-value: 2.26e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498517  106 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILAAIPFLHTAKQRSMMFRPMSQCMFWILVADLLTLTW 185
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 527498517  186 IGGQPVEHPFVVIGQMASVAY 206
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
1-101 7.65e-23

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 90.76  E-value: 7.65e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498517    1 IPYIGTSLVEWIWGGFSVDKATLTRFFAFHF-ILPFIVAALAGVHLLFLHETGSNNPSGLNSDADKIPFHPYYTIKDILG 79
Cdd:pfam13631  68 IPVVGTWLVWLLFGGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLF 147

                          90       100
                  ....*....|....*....|..
gi 527498517   80 MLIMIASLSSLVLFTPDMLGDP 101
Cdd:pfam13631 148 FLITVALLIGLAQINPIWLGGP 169
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-54 2.50e-19

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 82.42  E-value: 2.50e-19
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 527498517   1 IPYIGTSLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALAGVHLLFLHETGSN 54
Cdd:cd00284  147 IPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-52 2.73e-18

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 79.35  E-value: 2.73e-18
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 527498517    1 IPYIGTSLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALAGVHLLFLHETG 52
Cdd:pfam00033 138 IPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
petD CHL00058
cytochrome b6/f complex subunit IV
 77-175 5.48e-13

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 64.25  E-value: 5.48e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498517  77 ILGMlimIASLSSLVLFTPDMLGDPdnyipANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILAAIPFLH 156
Cdd:CHL00058  44 ILGT---IACNVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLE 115

                         90       100
                 ....*....|....*....|
gi 527498517 157 TAKQRSMMF-RPMSQCMFWI 175
Cdd:CHL00058 116 NVNKFQNPFrRPVATTVFLI 135
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 77-187 1.89e-12

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 62.89  E-value: 1.89e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498517  77 ILGMLIM--IASLSSLVLFTPDMLGDPdnyipANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILAAIPF 154
Cdd:COG5679   40 IFPVVILgtIALCIGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPF 114

                         90       100       110
                 ....*....|....*....|....*....|....
gi 527498517 155 LHTAKQRSMMF-RPMSQCMFwiLVADLLTLtWIG 187
Cdd:COG5679  115 IENVNKFQNPFrRPVATAVF--LFGTLVTL-WLG 145
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 77-187 8.13e-11

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 58.27  E-value: 8.13e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498517   77 ILGMLIMIASLSSLvlfTPDMLGDPdnyipANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILAAIPFLH 156
Cdd:TIGR01156  44 ILGTIACVVGLAVL---DPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIE 115

                          90       100       110
                  ....*....|....*....|....*....|..
gi 527498517  157 TAKQRSMMF-RPMSQCMFwiLVADLLTLtWIG 187
Cdd:TIGR01156 116 NVNKFQNPFrRPVATTVF--LFGTVVAL-WLG 144
petB CHL00070
cytochrome b6
 1-57 7.95e-08

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 50.87  E-value: 7.95e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 527498517   1 IPYIGTSLVEWIWGGFSVDKATLTRFFAFH-FILPFIVAALAGVHLLFLHETGSNNPS 57
Cdd:CHL00070 158 IPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
PRK03735 PRK03735
cytochrome b6; Provisional
 1-56 1.85e-07

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 50.10  E-value: 1.85e-07
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 527498517   1 IPYIGTSLVEWIWGGFSVDKATLTRFFAFH-FILPFIVAALAGVHLLFLHETGSNNP 56
Cdd:PRK03735 166 IPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMIRKQGISGP 222
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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