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Conserved domains on  [gi|545299281|gb|AGW27882|]
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non-structural protein 4 [Human coronavirus HKU1]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Corona_NS12-7 super family cl04724
Coronavirus non-structural protein NS12.7 family; This entry corresponds to a non-structural ...
 1-109 1.93e-44

Coronavirus non-structural protein NS12.7 family; This entry corresponds to a non-structural protein found in some beta coronaviruses. It is known as the NS12.7 family after its predicted molecular weight. The function of this protein is unknown.


The actual alignment was detected with superfamily member pfam04753:

Pssm-ID: 461419  Cd Length: 109  Bit Score: 139.63  E-value: 1.93e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545299281    1 MDVWRPSYTHSLVIREFGVTNLEDLCLKYNYCQPIVGYCIVPLNVWCRKFGKFASHFTLRSHDISHSNNFGVVTSFTTYG 80
Cdd:pfam04753   1 MDIWHVSDAWLRYTRDFGVYRLEDFCFQFNYKQPRVGYCRVPNKAWCRNQGKFAATFTLYGKEKHGDKYFGIITGFTAFG 80

                          90       100
                  ....*....|....*....|....*....
gi 545299281   81 NTVSEAVSRLVESASEFIVWRAEALNKYG 109
Cdd:pfam04753  81 NTVEEAVNKLVEEAVDFILWRATQLNRYG 109
 
Name Accession Description Interval E-value
Corona_NS12-7 pfam04753
Coronavirus non-structural protein NS12.7 family; This entry corresponds to a non-structural ...
 1-109 1.93e-44

Coronavirus non-structural protein NS12.7 family; This entry corresponds to a non-structural protein found in some beta coronaviruses. It is known as the NS12.7 family after its predicted molecular weight. The function of this protein is unknown.


Pssm-ID: 461419  Cd Length: 109  Bit Score: 139.63  E-value: 1.93e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545299281    1 MDVWRPSYTHSLVIREFGVTNLEDLCLKYNYCQPIVGYCIVPLNVWCRKFGKFASHFTLRSHDISHSNNFGVVTSFTTYG 80
Cdd:pfam04753   1 MDIWHVSDAWLRYTRDFGVYRLEDFCFQFNYKQPRVGYCRVPNKAWCRNQGKFAATFTLYGKEKHGDKYFGIITGFTAFG 80

                          90       100
                  ....*....|....*....|....*....
gi 545299281   81 NTVSEAVSRLVESASEFIVWRAEALNKYG 109
Cdd:pfam04753  81 NTVEEAVNKLVEEAVDFILWRATQLNRYG 109
 
Name Accession Description Interval E-value
Corona_NS12-7 pfam04753
Coronavirus non-structural protein NS12.7 family; This entry corresponds to a non-structural ...
 1-109 1.93e-44

Coronavirus non-structural protein NS12.7 family; This entry corresponds to a non-structural protein found in some beta coronaviruses. It is known as the NS12.7 family after its predicted molecular weight. The function of this protein is unknown.


Pssm-ID: 461419  Cd Length: 109  Bit Score: 139.63  E-value: 1.93e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545299281    1 MDVWRPSYTHSLVIREFGVTNLEDLCLKYNYCQPIVGYCIVPLNVWCRKFGKFASHFTLRSHDISHSNNFGVVTSFTTYG 80
Cdd:pfam04753   1 MDIWHVSDAWLRYTRDFGVYRLEDFCFQFNYKQPRVGYCRVPNKAWCRNQGKFAATFTLYGKEKHGDKYFGIITGFTAFG 80

                          90       100
                  ....*....|....*....|....*....
gi 545299281   81 NTVSEAVSRLVESASEFIVWRAEALNKYG 109
Cdd:pfam04753  81 NTVEEAVNKLVEEAVDFILWRATQLNRYG 109
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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