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Conserved domains on  [gi|564732269|gb|AHC00208|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Eutropis cumingi]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 5-338 8.12e-133

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 381.86  E-value: 8.12e-133
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269   5 LIMSSVATGTIITMTSYHWLLAWIGLELNTLAIIPIIAKQHNPRATEATTKYFLTQAAASATILFASTINAWQTGTWDIT 84
Cdd:MTH00112   8 IITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDIT 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269  85 QLTNQPSCILLTMALAMKLGLTPLHFWLPEVLQGTTLKTALIITTWQKLAPAALLYLVQHSTNPAILLTMGIMSTIVGGW 164
Cdd:MTH00112  88 QLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGW 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269 165 GGLNQTQMRKIMAFSSIANLGWMATILTINPNIMLLNLTLYILMTTPLFLMLMFTSSKTIKDLTTTWTVSPPITAMLLML 244
Cdd:MTH00112 168 GGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLT 247

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269 245 LMSMGGLPPLTGFIPKWLILQELTTHNLTTTATVLALSALLSLFFYLRLSYTSTLTVFPTTAKNTYKWRFQPKLNTLpMA 324
Cdd:MTH00112 248 LLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTL-TA 326

                        330
                 ....*....|....
gi 564732269 325 ATTAISLLLLPMTP 338
Cdd:MTH00112 327 TLTTLSTLLLPLSP 340
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 5-338 8.12e-133

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 381.86  E-value: 8.12e-133
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269   5 LIMSSVATGTIITMTSYHWLLAWIGLELNTLAIIPIIAKQHNPRATEATTKYFLTQAAASATILFASTINAWQTGTWDIT 84
Cdd:MTH00112   8 IITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDIT 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269  85 QLTNQPSCILLTMALAMKLGLTPLHFWLPEVLQGTTLKTALIITTWQKLAPAALLYLVQHSTNPAILLTMGIMSTIVGGW 164
Cdd:MTH00112  88 QLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGW 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269 165 GGLNQTQMRKIMAFSSIANLGWMATILTINPNIMLLNLTLYILMTTPLFLMLMFTSSKTIKDLTTTWTVSPPITAMLLML 244
Cdd:MTH00112 168 GGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLT 247

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269 245 LMSMGGLPPLTGFIPKWLILQELTTHNLTTTATVLALSALLSLFFYLRLSYTSTLTVFPTTAKNTYKWRFQPKLNTLpMA 324
Cdd:MTH00112 248 LLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTL-TA 326

                        330
                 ....*....|....
gi 564732269 325 ATTAISLLLLPMTP 338
Cdd:MTH00112 327 TLTTLSTLLLPLSP 340
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 20-265 1.00e-27

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 109.71  E-value: 1.00e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269   20 SYHWLLAWIGLELNTLAIIPIIA-KQHNPRATEATTKYFLTQAAASATILFASTINAWQTGTWDITQLTNQPSC------ 92
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGglnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269   93 -----ILLTMALAMKLGLTPLHFWLPEVLQGT-TLKTALIITTWQKLAPAAL---LYLVQHSTNPA--ILLTMGIMSTIV 161
Cdd:pfam00361  81 llllfLLILVGFLFKSAQVPFHTWLPDAYEGApTPVSALLAATLVKAGGYGLirrSLLYLPSSPFIqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269  162 GGWGGLNQTQMRKIMAFSSIANLGWMATILTINPNI----MLLNLTLYILMTTPLFLM-----LMFTSSKTIKDLTTTWT 232
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYgiqaAIFHLLTHGLFSAGLFLCagsviYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 564732269  233 VSPPITAMLLMLLMSMGGLPPLTGFIPKWLILQ 265
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 3-267 6.21e-22

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 95.95  E-value: 6.21e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269   3 YALIMSSVAtGTIITMTSYHWLLAWIGLELNTLAIIPIIA-KQHNPRATEATTKYFLTQAAASATILFASTINAWQTGTW 81
Cdd:COG1007  105 YALLLFATL-GMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSL 183

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269  82 DITQL-----TNQPSCILLTMALAM-------KLGLTPLHFWLPEVLQGTTLKTALIITTWQKLAPAALLYLVQHSTNPA 149
Cdd:COG1007  184 NLAGIaaalaAGGANSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEAFPG 263

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269 150 -------ILLTMGIMSTIVGGWGGLNQTQMRKIMAFSSIANLGWMATILTINPNI----MLLNLTLYILMTTPLFLMLMF 218
Cdd:COG1007  264 laadwqlLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLgvsaALFYLLAYLFMNLGAFAVILL 343

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 564732269 219 TSSK-----TIKDLTTTWTVSPPITAMLLMLLMSMGGLPPLTGFIPKWLILQEL 267
Cdd:COG1007  344 LSRKggeaeEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAA 397
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 3-267 3.56e-19

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 88.08  E-value: 3.56e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269    3 YALIMSSVaTGTIITMTSYHWLLAWIGLELNTLAIIPIIA-KQHNPRATEATTKYFLTQAAASATILFASTINAWQTGTW 81
Cdd:TIGR01770 105 YILLLFAL-LGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSL 183

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269   82 DITQLTNQPSC------------ILLTMALAMKLGLTPLHFWLPEVLQGTTLKTALIITTWQKLAPAALL-------YLV 142
Cdd:TIGR01770 184 NFEDLLLFLSNgmlnisllllgiVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFlrlflyiLFG 263

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269  143 QHSTNPAILLTMGIMSTIVGGWGGLNQTQMRKIMAFSSIANLGWMATILTINPNI----MLLNLTLYILMTTPLFLMLMF 218
Cdd:TIGR01770 264 FSEAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEgikaVLFYIFIYALMSLGAFGVLSL 343

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 564732269  219 TSS------KTIKDLTTTWTVSPPITAMLLMLLMSMGGLPPLTGFIPKWLILQEL 267
Cdd:TIGR01770 344 LRSykdewiEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFAL 398
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 5-338 8.12e-133

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 381.86  E-value: 8.12e-133
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269   5 LIMSSVATGTIITMTSYHWLLAWIGLELNTLAIIPIIAKQHNPRATEATTKYFLTQAAASATILFASTINAWQTGTWDIT 84
Cdd:MTH00112   8 IITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDIT 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269  85 QLTNQPSCILLTMALAMKLGLTPLHFWLPEVLQGTTLKTALIITTWQKLAPAALLYLVQHSTNPAILLTMGIMSTIVGGW 164
Cdd:MTH00112  88 QLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGW 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269 165 GGLNQTQMRKIMAFSSIANLGWMATILTINPNIMLLNLTLYILMTTPLFLMLMFTSSKTIKDLTTTWTVSPPITAMLLML 244
Cdd:MTH00112 168 GGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLT 247

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269 245 LMSMGGLPPLTGFIPKWLILQELTTHNLTTTATVLALSALLSLFFYLRLSYTSTLTVFPTTAKNTYKWRFQPKLNTLpMA 324
Cdd:MTH00112 248 LLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTL-TA 326

                        330
                 ....*....|....
gi 564732269 325 ATTAISLLLLPMTP 338
Cdd:MTH00112 327 TLTTLSTLLLPLSP 340
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 4-338 1.68e-131

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 378.76  E-value: 1.68e-131
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269   4 ALIMSSVATGTIITMTSYHWLLAWIGLELNTLAIIPIIAKQHNPRATEATTKYFLTQAAASATILFASTINAWQTGTWDI 83
Cdd:MTH00135   7 TILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGQWDI 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269  84 TQLTNQPSCILLTMALAMKLGLTPLHFWLPEVLQGTTLKTALIITTWQKLAPAALLYLVQhSTNPAILLTMGIMSTIVGG 163
Cdd:MTH00135  87 QQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIA-PTNPTLLITLGLTSTLVGG 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269 164 WGGLNQTQMRKIMAFSSIANLGWMATILTINPNIMLLNLTLYILMTTPLFLMLMFTSSKTIKDLTTTWTVSPPITAMLLM 243
Cdd:MTH00135 166 WGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPL 245

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269 244 LLMSMGGLPPLTGFIPKWLILQELTTHNLTTTATVLALSALLSLFFYLRLSYTSTLTVFPTTAKNTYKWRFQPKLNTLPM 323
Cdd:MTH00135 246 ILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPSTQLTLPL 325

                        330
                 ....*....|....*
gi 564732269 324 AATTAISLLLLPMTP 338
Cdd:MTH00135 326 AISTTATLMLLPLTP 340
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 6-338 3.40e-127

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 367.71  E-value: 3.40e-127
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269   6 IMSSVATGTIITMTSYHWLLAWIGLELNTLAIIPIIAKQHNPRATEATTKYFLTQAAASATILFASTINAWQTGTWDITQ 85
Cdd:MTH00070   9 LLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTGEWTIMN 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269  86 LTNQPSCILLTMALAMKLGLTPLHFWLPEVLQGTTLKTALIITTWQKLAPAALLYLVQHSTNPAILLTMGIMSTIVGGWG 165
Cdd:MTH00070  89 MQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLLSTLIGGWG 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269 166 GLNQTQMRKIMAFSSIANLGWMATILTINPNIMLLNLTLYILMTTPLFLMLMFTSSKTIKDLTTTWTVSPPITAMLLMLL 245
Cdd:MTH00070 169 GLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLTL 248

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269 246 MSMGGLPPLTGFIPKWLILQELTTHNLTTTATVLALSALLSLFFYLRLSYTSTLTVFPTTAKNTYKWRFQPKLNtLPMAA 325
Cdd:MTH00070 249 LSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNKTN-NLLSL 327

                        330
                 ....*....|...
gi 564732269 326 TTAISLLLLPMTP 338
Cdd:MTH00070 328 TIILSLMLLPITP 340
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-338 1.35e-120

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 351.07  E-value: 1.35e-120
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269   1 IMYALIMSSVATGTIITMTSYHWLLAWIGLELNTLAIIPIIAKQHNPRATEATTKYFLTQAAASATILFASTINAWQTGT 80
Cdd:MTH00105   4 LILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYSGQ 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269  81 WDITQLTNQPSCILLTMALAMKLGLTPLHFWLPEVLQGTTLKTALIITTWQKLAPAALLYLVQHSTNPAILLTMGIMSTI 160
Cdd:MTH00105  84 WTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAILSIL 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269 161 VGGWGGLNQTQMRKIMAFSSIANLGWMATILTINPNIMLLNLTLYILMTTPLFLMLMFTSSKTIKDLTTTWTVSPPITAM 240
Cdd:MTH00105 164 IGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSL 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269 241 LLMLLMSMGGLPPLTGFIPKWLILQELTTHNLTTTATVLALSALLSLFFYLRLSYTSTLTVFPTTAKNTYKWRFQPKLNT 320
Cdd:MTH00105 244 ILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENTKPM 323

                        330
                 ....*....|....*...
gi 564732269 321 LPMAATTAISLLLLPMTP 338
Cdd:MTH00105 324 TLLPTLIILSTMLLPLTP 341
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-338 4.93e-92

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 278.39  E-value: 4.93e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269   1 IMYALIMSSVATGTIITMTSYHWLLAWIGLELNTLAIIPIIAKQHNPRATEATTKYFLTQAAASATILFASTINAWQTGT 80
Cdd:MTH00200   4 LILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQ 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269  81 WDITQLTNQPSCILLTMALAMKLGLTPLHFWLPEVLQGTTLKTALIITTWQKLAPAALLYLVQHSTNPAILLTMGIMSTI 160
Cdd:MTH00200  84 WGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLLSVL 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269 161 VGGWGGLNQTQMRKIMAFSSIANLGWMATILTINPNIMLLNLTLYILMTTPLFLMLMFTSSKTIKDLTTTWTVSPPITAM 240
Cdd:MTH00200 164 VGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSML 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269 241 LLMLLMSMGGLPPLTGFIPKWLILQELTTHNLTTTATVLALSALLSLFFYLRLSYTSTLTVFPTTAKNTYKWRFQPKLNt 320
Cdd:MTH00200 244 LGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSNSN- 322

                        330
                 ....*....|....*...
gi 564732269 321 LPMAATTAISLLLLPMTP 338
Cdd:MTH00200 323 LLVGLLLLLSILGLPLTP 340
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-334 1.45e-86

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 264.49  E-value: 1.45e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269   1 IMYALIMSSVATGTIITMTSYHWLLAWIGLELNTLAIIPIIAKQHNPRATEATTKYFLTQAAASATILFASTINAWQTGT 80
Cdd:MTH00041   4 NVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGS 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269  81 WDITQLTNQPSCILLTMALAMKLGLTPLHFWLPEVLQGTTLKTALIITTWQKLAPAALLYLVQHSTNPAILLTMGIMSTI 160
Cdd:MTH00041  84 WSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVL 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269 161 VGGWGGLNQTQMRKIMAFSSIANLGWMATILTINPNIMLLNLTLYILMTTPLFLMLMFTSSKTIKDLTTTWTVSPPITAM 240
Cdd:MTH00041 164 VGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFL 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269 241 LLMLLMSMGGLPPLTGFIPKWLILQELTTHNLTTTATVLALSALLSLFFYLRLSYTSTLTVFPTTAKNTYKWRFQPKLNT 320
Cdd:MTH00041 244 FILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGNITV 323

                        330
                 ....*....|....
gi 564732269 321 LPMAATTAISLLLL 334
Cdd:MTH00041 324 YGVILSILSSISIL 337
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-338 1.43e-55

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 184.26  E-value: 1.43e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269   1 IMYALIMSSVATGTIITMTSYHWLLAWIGLELNTLAIIPIIAKQHNPRATEATTKYFLTQAAASATILFASTINAWqtgt 80
Cdd:MTH00160   5 SSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML---- 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269  81 wdITQLTNQPSCILLTMALAMKLGLTPLHFWLPEVLQGTTLKTALIITTWQKLAPaalLYLVQHSTNPAILLTMGIMSTI 160
Cdd:MTH00160  81 --NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAP---LILLSYLINNNFIIIIIILSAI 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269 161 VGGWGGLNQTQMRKIMAFSSIANLGWMATILTINPNIMLLNLTLYILMTTPLFLMLMFTSSKTIKDLTTTWTVSPPITAM 240
Cdd:MTH00160 156 IGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFL 235

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269 241 LLMLLMSMGGLPPLTGFIPKWLILQELTTHNLTTTATVLALSALLSLFFYLRLSYTSTLTVFPttaKNTYKWRFQPKLNT 320
Cdd:MTH00160 236 LFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYN---KNKWNLKKKKNKFS 312

                        330
                 ....*....|....*...
gi 564732269 321 LPMAATTAISLLLLPMTP 338
Cdd:MTH00160 313 LILNFLSFISLFGLILSS 330
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 5-334 1.19e-51

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 173.92  E-value: 1.19e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269   5 LIMSSVATGTIITMTSYHWLLAWIGLELNTLAIIPIIAKQHNPRATEATTKYFLTQAAASATILFASTINAWQTGTWDIT 84
Cdd:MTH00144   8 LFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFSM 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269  85 qltnqpscILLTMALAMKLGLTPLHFWLPEVLQGTTLKTALIITTWQKLAP-AALLYLVQHSTNPAILLTMGIMSTIVGG 163
Cdd:MTH00144  88 --------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPlFLLSNFLDLYWLAYLLCVISVLSALVGS 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269 164 WGGLNQTQMRKIMAFSSIANLGWMATILTINPNIMLLNLTLYILMTTPLFLMLMFTSSKTIKDLTTTwTVSPPITAMLLM 243
Cdd:MTH00144 160 IGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSL-KPSYKTGLSIIS 238

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269 244 LLMSMGGLPPLTGFIPKWLILQELTTHNLTTTATVLALSALLSLFFYLRLSYTSTLTVFPTTAKNTYKWRFQPkLNTLPM 323
Cdd:MTH00144 239 LLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKVLNSS-IISLNL 317

                        330
                 ....*....|.
gi 564732269 324 AATTAISLLLL 334
Cdd:MTH00144 318 LGGLLFLLLYL 328
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 4-298 9.24e-47

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 161.10  E-value: 9.24e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269   4 ALIMSSVATGTIITMTSYHWLLAWIGLELNTLAIIPIIAKQHNPRATEATTKYFLTQAAASATILFASTInawqtgTWDI 83
Cdd:MTH00011   9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTM------MWSF 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269  84 TQLTNQPSCILLTMALAMKLGLTPLHFWLPEVLQGTTLKTALIITTWQKLAPAALLYLVQHSTNPAILLTMGIMSTIVGG 163
Cdd:MTH00011  83 PSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGG 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269 164 WGGLNQTQMRKIMAFSSIANLGWMATILTINPNIMLLNLTLYILMTTPLFLMLMFTSSKTIKDLTTTWTVSPPITAMLLM 243
Cdd:MTH00011 163 LGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFI 242

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 564732269 244 LLMSMGGLPPLTGFIPKWLILQELTTHNLTTTATVLALSALLSLFFYLRLSYTST 298
Cdd:MTH00011 243 MLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFM 297
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 5-297 1.20e-36

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 134.41  E-value: 1.20e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269   5 LIMSSVATGTIITMTSYHWLLAWIGLELNTLAIIPIIAKQHNPRATEATTKYFLTQAAASATILF---ASTINAWqtgtw 81
Cdd:MTH00197   2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMggsLSFSNLY----- 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269  82 ditqlTNQPSCILLTMALAMKLGLTPLHFWLPEVLQGTTLKTALIITTWQKLAPaaLLYLVQHSTNPAILLTMGIMSTIV 161
Cdd:MTH00197  77 -----LSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAP--LLILAFNSSSFMGLLICSVLSSLI 149

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269 162 GGWGGLNQTQMRKIMAFSSIANLGWMATILTINPNIMLLNLTLYILMTTPLFLMLMFTSSKTIKDLTTTWTVSPPITAML 241
Cdd:MTH00197 150 GGIGGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFL 229

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 564732269 242 LMLLMSMGGLPPLTGFIPKWLILQELTTHNLTTTATVLALSALLSLFFYLRLSYTS 297
Cdd:MTH00197 230 GLSFLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKS 285
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 20-265 1.00e-27

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 109.71  E-value: 1.00e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269   20 SYHWLLAWIGLELNTLAIIPIIA-KQHNPRATEATTKYFLTQAAASATILFASTINAWQTGTWDITQLTNQPSC------ 92
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGglnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269   93 -----ILLTMALAMKLGLTPLHFWLPEVLQGT-TLKTALIITTWQKLAPAAL---LYLVQHSTNPA--ILLTMGIMSTIV 161
Cdd:pfam00361  81 llllfLLILVGFLFKSAQVPFHTWLPDAYEGApTPVSALLAATLVKAGGYGLirrSLLYLPSSPFIqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269  162 GGWGGLNQTQMRKIMAFSSIANLGWMATILTINPNI----MLLNLTLYILMTTPLFLM-----LMFTSSKTIKDLTTTWT 232
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYgiqaAIFHLLTHGLFSAGLFLCagsviYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 564732269  233 VSPPITAMLLMLLMSMGGLPPLTGFIPKWLILQ 265
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 10-264 1.69e-22

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 97.78  E-value: 1.69e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269  10 VATGTIITMTSYHWLLAWIGLELNTLAIIPIIA-KQHNPRATEATTKYFLTQAAASATILFASTINAWQTGTWDI----T 84
Cdd:MTH00199 106 VALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIqginS 185

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269  85 QLTNQPSCILLTMALAMKLGLTPLHFWLPEVLQGTTLKTALIITTWQKLAPAALLYLVQHSTNpaILLTMGIMSTIVGGW 164
Cdd:MTH00199 186 ILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTN--VVLICAVLSIIYGAI 263

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269 165 GGLNQTQMRKIMAFSSIANLGWMATILTINPN----IMLLNLTLYILMTTPLFLMLMFT--SSKTIKDLTTTWTVSPPIT 238
Cdd:MTH00199 264 GALNQTKIKRLLAYSGIGHMGFILFGVAIGSFesiqASLIYMIIYVIMSICSFSIILSLklTKGLIVEVSGLSRKNPVIA 343

                        250       260
                 ....*....|....*....|....*.
gi 564732269 239 AMLLMLLMSMGGLPPLTGFIPKWLIL 264
Cdd:MTH00199 344 LTLALTFLSIAGIPPLAGFLSKWLIL 369
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
2-265 1.70e-22

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 97.58  E-value: 1.70e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269   2 MYALIMSSVAtGTIITMTSYHWLLAWIGLELNTLAIIPIIA-KQHNPRATEATTKYFLTQAAASATILFASTINAWQTGT 80
Cdd:PRK05777 105 FYLLVLFALL-GMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGS 183

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269  81 WDITQLTNQPS------------CILLTMALAMKLGLTPLHFWLPEVLQGTTLKTALIITTWQKLAPAA----LLYLVQH 144
Cdd:PRK05777 184 LSFAGIAKALAdgsgnsllllfgLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAvllrLLVVAFG 263

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269 145 STNPA---ILLTMGIMSTIVGGWGGLNQTQMRKIMAFSSIANLGWMATILTINPNI----MLLNLTLYILMTTPLFLMLM 217
Cdd:PRK05777 264 GLSEDwqqVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEgysaVLFYLLAYLFMTLGAFGVIS 343

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 564732269 218 FTSSK-----TIKDLTTTWTVSPPITAMLLMLLMSMGGLPPLTGFIPKWLILQ 265
Cdd:PRK05777 344 LLRRKggeaeSISDFAGLSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFE 396
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 10-264 2.31e-22

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 96.25  E-value: 2.31e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269  10 VATGTIITMTSYHWLLAWIGLELNTLAIIPIIAKQHNP-RATEATTKYFLTQAAASATILFASTINAWQTGTWDI--TQL 86
Cdd:MTH00196   2 VALGILCLISSSNWLSVYLAIELQTLSLFILIAQNRGSgYSAEAGLKYFVLGALSSGLFLFGCALLCGTTGGLHLsyINL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269  87 TNQPSC-----------ILLTMALAMKLGLTPLHFWLPEVLQGTTLKTALIITTWQKLAPAALLylVQHSTNPAILLTMG 155
Cdd:MTH00196  82 VLNSGQsfssvsvpigyLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSIL--VSIGLNVNILLIGG 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269 156 IMSTIVGGWGGLNQTQMRKIMAFSSIANLGWMATILTINP----NIMLLNLTLYILMTTPLFLMLMFTSSKT--IKDLTT 229
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSICVFSIILALNVYKnlIIEFSG 239

                        250       260       270
                 ....*....|....*....|....*....|....*
gi 564732269 230 TWTVSPPITAMLLMLLMSMGGLPPLTGFIPKWLIL 264
Cdd:MTH00196 240 LSRRLPILAITLALTFLSIAGIPPLVGFLGKWLIL 274
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 3-267 6.21e-22

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 95.95  E-value: 6.21e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269   3 YALIMSSVAtGTIITMTSYHWLLAWIGLELNTLAIIPIIA-KQHNPRATEATTKYFLTQAAASATILFASTINAWQTGTW 81
Cdd:COG1007  105 YALLLFATL-GMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSL 183

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269  82 DITQL-----TNQPSCILLTMALAM-------KLGLTPLHFWLPEVLQGTTLKTALIITTWQKLAPAALLYLVQHSTNPA 149
Cdd:COG1007  184 NLAGIaaalaAGGANSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEAFPG 263

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269 150 -------ILLTMGIMSTIVGGWGGLNQTQMRKIMAFSSIANLGWMATILTINPNI----MLLNLTLYILMTTPLFLMLMF 218
Cdd:COG1007  264 laadwqlLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLgvsaALFYLLAYLFMNLGAFAVILL 343

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 564732269 219 TSSK-----TIKDLTTTWTVSPPITAMLLMLLMSMGGLPPLTGFIPKWLILQEL 267
Cdd:COG1007  344 LSRKggeaeEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAA 397
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 3-267 3.56e-19

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 88.08  E-value: 3.56e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269    3 YALIMSSVaTGTIITMTSYHWLLAWIGLELNTLAIIPIIA-KQHNPRATEATTKYFLTQAAASATILFASTINAWQTGTW 81
Cdd:TIGR01770 105 YILLLFAL-LGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSL 183

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269   82 DITQLTNQPSC------------ILLTMALAMKLGLTPLHFWLPEVLQGTTLKTALIITTWQKLAPAALL-------YLV 142
Cdd:TIGR01770 184 NFEDLLLFLSNgmlnisllllgiVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFlrlflyiLFG 263

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269  143 QHSTNPAILLTMGIMSTIVGGWGGLNQTQMRKIMAFSSIANLGWMATILTINPNI----MLLNLTLYILMTTPLFLMLMF 218
Cdd:TIGR01770 264 FSEAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEgikaVLFYIFIYALMSLGAFGVLSL 343

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 564732269  219 TSS------KTIKDLTTTWTVSPPITAMLLMLLMSMGGLPPLTGFIPKWLILQEL 267
Cdd:TIGR01770 344 LRSykdewiEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFAL 398
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 27-265 1.07e-17

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 83.27  E-value: 1.07e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269  27 WIGLELNTLAIIPIIAKQHNPRATEATTKYFLTQAAASATILFASTINAWQTGTWDITQLTN----------QPSCILLT 96
Cdd:COG0651  133 FVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAArlaeldpgllLAAFALLL 212

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269  97 MALAMKLGLTPLHFWLPE-----------VLQGTTLKTAL--IITTWQKLAPAALLYLVQHstnpaILLTMGIMSTIVGG 163
Cdd:COG0651  213 VGFGIKAALFPLHFWLPDaypaapspvsaLLSGLLTKVGVyaILRVLTLLFGADPALFLGT-----LLLVLGLLTMLVGA 287

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269 164 WGGLNQTQMRKIMAFSSIANLGWMATILTINPNIMLLNLTLYI----LMTTPLFL----MLMFTSSKTIKDLTTTWTVSP 235
Cdd:COG0651  288 LGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLlnhaLAKALLFLaagaIERATGTRDLDKLGGLGKRMP 367

                        250       260       270
                 ....*....|....*....|....*....|
gi 564732269 236 PITAMLLMLLMSMGGLPPLTGFIPKWLILQ 265
Cdd:COG0651  368 LTAAAFLIGALALAGLPPLSGFVSKWLLLQ 397
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 10-187 2.30e-11

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 64.88  E-value: 2.30e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269  10 VATGTIITMTSYHWLLAWIGLELNTLAIIPIIAKQHNPRAT---------EATTKYFLTQAAASATILFASTINAWQTG- 79
Cdd:MTH00198 197 VGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGn 276

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269  80 -------------TWDITQLTNQPSCILLTMALAMKLGLTPLHFWLPEVLQGT-TLKTALIITTWQKLAPAALLYLVQHS 145
Cdd:MTH00198 277 egmlgtilsatleTTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGApTPTTALIAIIPKFTVYILLTSLVITS 356

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 564732269 146 TnpaILLTMGIMSTIVGGWGGLNQTQMRKIMAFSSIANLGWM 187
Cdd:MTH00198 357 K---LLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFI 395
ndhB CHL00049
NADH dehydrogenase subunit 2
 48-260 4.45e-10

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 60.40  E-value: 4.45e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269  48 RATEATTKYFLTQAAASATILFAST----INAWQTGTWDI------TQLTNQPSC----ILLTMALAMKLGLTPLHFWLP 113
Cdd:CHL00049 159 RSNEATMKYLLMGGASSSILVYGFSwlygLSGGEIELQEIvnglinTQMYNSPGIsialIFITVGIGFKLSLAPFHQWTP 238

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269 114 EVLQGTTLKTALIITTWQKLAPAALLYLVQHSTNPA-------ILLTMGIMSTIVGGWGGLNQTQMRKIMAFSSIANLGW 186
Cdd:CHL00049 239 DVYEGSPTPVVAFLSVTSKVAASALATRIFDIPFYFssnewhlLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGY 318

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269 187 -MATILTINPNI----MLLNLTLYILMTTPLFLMLMFTSSKT----IKDLTTTWTVSPPITAMLLMLLMSMGGLPPLTGF 257
Cdd:CHL00049 319 vIIGIIVGDSNDgyasMITYMLFYIFMNLGTFACIVLFGLRTgtdnIRDYAGLYTKDPFLALSLALCLLSLGGIPPLAGF 398


                 ...
gi 564732269 258 IPK 260
Cdd:CHL00049 399 FGK 401
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 2-267 4.22e-09

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 57.70  E-value: 4.22e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269   2 MYALIMSsvaTGTIITMTSYHWLLAWIGLELNTLA---IIPIIAKqhnpRATEATTKYFLTQAAASATILFASTINAWQT 78
Cdd:PRK08668 102 MFALMSL---AGVLGVFLANDLLTLYIFWEIMTFSsfmMVPMGKK----ESRKASLKYFVLSAIGAYAMLYAIFLIYAKT 174

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269  79 GTWDITQ----LTNQPS-------CILLTMALAMKLGLTPLHFWLPE-----------VLQGTTLKT-ALIITTWQKLAP 135
Cdd:PRK08668 175 GTFDFADisqgLINDTStgfalivFLFLLAFGVAKAGIFPLHVWAPDayseapqsfsaVLSGQLSKLgAYGFLLVLYVLP 254

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269 136 AALLY--LVQHSTNPA---ILLTMGIMSTIVGGWGGLNQTQMRKIMAFSSIANLGWMATILTINPNIMLLNLTLYILmTT 210
Cdd:PRK08668 255 GTKLFseFGTYRGVPLfnyILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFAGGLFHVF-NH 333

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564732269 211 PLFLMLMFTSSKTIKDLTTTWTVSP--------PIT-AMLLMLLMSMGGLPPLTGFIPKWLILQEL 267
Cdd:PRK08668 334 ALFKGLFFLIFAAVIYRTGTTKISEmggliekmPFTfAMYLVAIISLAGIPPMSGFASKWLIFEAL 399
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
46-260 1.67e-07

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 52.75  E-value: 1.67e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269  46 NPRATEATTKYFLTQAAASATILFAST----INAWQTGTWDITQ-LTNQPScILLTMAL-------AMKLGLTPLHFWLP 113
Cdd:PRK02504 156 DPRSNEAALKYLLIGAASSAIFLYGSSllygLSGGSTQLSAIALaLITSPS-LGLALALvfviagiAFKISAVPFHQWTP 234

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269 114 EVLQGTTLKTALIITTWQKLAPAALLYLVQHSTNPA-------ILLTMGIMSTIVGGWGGLNQTQMRKIMAFSSIANLGW 186
Cdd:PRK02504 235 DVYEGSPTPVVAFLSVGSKAAGFALAIRLLVTAFPSfdeqwklLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGF 314

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269 187 MATILTINPN----IMLLNLTLYILMTTPLFLMLMFTSSKT----IKDLTTTWTVSPPITAMLLMLLMSMGGLPPLTGFI 258
Cdd:PRK02504 315 VMIGLVAGTEagyaSMVFYLLAYLFMNLGAFACVILFSLRTgtdqISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGFF 394


                 ..
gi 564732269 259 PK 260
Cdd:PRK02504 395 GK 396
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 2-265 5.83e-07

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 50.71  E-value: 5.83e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269    2 MYALIMSsVATGTIITMTSYHWLLAWIGLELNTLAIIPIIAKQHNPRATEATTKYFLTQAAASATILFASTINAWQTG-T 80
Cdd:TIGR01972 108 FYALLLL-LEAGVIGVFLALDLFLFYVFWEAMLIPMYLLIGVWGGPNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGgT 186

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269   81 WDITQLTNQPSC--------ILLTMALAMKLGLTPLHFWLPEV-----------LQGTTLKTAL--IITTWQKLAPAALL 139
Cdd:TIGR01972 187 FDLLELLNLPLPfgvqtwlfLAFFIAFAVKVPLFPLHTWLPDAhveaptagsviLAGVLLKMGTygFLRFNLPLFPDASL 266

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269  140 YLVqhstnpAILLTMGIMSTIVGGWGGLNQTQMRKIMAFSSIANLGWMAT-ILTINPNIMLLNLTLYI---LMTTPLFLM 215
Cdd:TIGR01972 267 YFA------PVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLgIFSFNELGISGAVFQMIshgLITAALFLL 340

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 564732269  216 LMF----TSSKTIKDLTTTWTVSPPITAMLLMLLMSMGGLPPLTGFIPKWLILQ 265
Cdd:TIGR01972 341 VGVlyerAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFLILL 394
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 290-338 2.16e-06

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 44.17  E-value: 2.16e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 564732269  290 YLRLSYTSTLTVFPTTAKNTYKWRFQPKLNTLPMAATTAISLLLLPMTP 338
Cdd:pfam06444   3 YLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLLLPTLTTLSILLLPLTP 51
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 77-260 2.32e-06

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 49.15  E-value: 2.32e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269  77 QTGTWDITQL-TNQPSCILLTMALAM-------KLGLTPLHFWLPEVLQGTTLKTALiittwqkLAPAAL----LYLVQH 144
Cdd:PRK12644 183 AAGTYRLSELlADPPTGPAVSVAVVLilvgalsKSAIVPFHFWLPGAMAAPTPVSAY-------LHAAAMvkagIYLVAR 255

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269 145 STnPA---------ILLTMGIMSTIVGGWGGLNQTQMRKIMAFSSIANLGWMATILTI-NPNIMLLNLTLYI---LMTTP 211
Cdd:PRK12644 256 LA-PGfadvpvwrpTVLVLGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIgTRDAALAGLAMLLahaLFKAA 334

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 564732269 212 LFLMLMF----TSSKTIKDLTTTWTVSPPITAMLLMLLMSMGGLPPLTGFIPK 260
Cdd:PRK12644 335 LFLVVGIidhsTGTRDIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAK 387
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 30-333 5.02e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 47.95  E-value: 5.02e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269  30 LELNTLAIIPIIAKQHNPRATEATTKYFLTQAAASATILFASTINAWQTGTWDITQLTNQ--PSCILLTM------ALAM 101
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAGAlaENPTVVTAfgfvllALAL 214

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269 102 KLGLTPLHFWLPEVLQGTT-LKTALIITTWQKLAPAAL--LYLV-------QHSTNPAILLTMGIMSTIVGGWGGLNQTQ 171
Cdd:PRK08375 215 KAAVFPLHTWLPRAYPAAPpVVTALLSGLVTKVAVYALirIYFTvfggdfrFALGLGWLLAVLALLSMLVGSLAALGQDD 294

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269 172 MRKIMAFSSIANLGWMATILTINPNIMLLNLTLYI----LMTTPLFL----MLMFTSSKTIKDLTTTWTVSPPITAMLLM 243
Cdd:PRK08375 295 VKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLlhhaLMKGALFLaagaIEVTYGTRRLSELSGLGRRMPLTAAAFAV 374

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269 244 LLMSMGGLPPLTGFIPKWLILQELTTHNLTTTATVLALSALLSLFFYLRLSYTSTLTVFPTTAKNTYKwrFQPKLNTLPM 323
Cdd:PRK08375 375 ASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWYRAFFGPPPPGSEAPKQ--EAPLGMLAPS 452

                        330
                 ....*....|
gi 564732269 324 AATTAISLLL 333
Cdd:PRK08375 453 LALALLSLLL 462
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 24-185 9.85e-06

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 46.95  E-value: 9.85e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269  24 LLAWIGLELNTLAIIPIIAKQHNPRATEATTKYFLTQAAASATILFASTINAWQTG--TWDITQLTNQPSCILLTM---- 97
Cdd:PRK12561 110 LLFFLMWELELVPVYLLISIWGGQKRLYAATKFILYTALASIFILVAGLALALSGDtfTFDLAELGAKSYPLALELllya 189

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269  98 ----ALAMKLGLTPLHFWLPE-----------VLQGTTLKT---ALIITTWQKLaPAALLYLVqhstnpAILLTMGIMST 159
Cdd:PRK12561 190 gfliAFGVKLPIFPLHTWLPDahgeasapvsmILAGVLLKMggyALIRFNVQML-PDAHVYFA------PALAILGVVNI 262

                        170       180
                 ....*....|....*....|....*.
gi 564732269 160 IVGGWGGLNQTQMRKIMAFSSIANLG 185
Cdd:PRK12561 263 IYGALNAFAQDNVKRRLAYSSVSHMG 288
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 30-187 1.02e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 47.01  E-value: 1.02e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269  30 LELNTLAIIPIIAKQHN-PRATEATTKYFLTQAAASATILFASTINAWQTGTWDI----------TQLTNQPSCILLTMA 98
Cdd:PRK08376 150 LEIMSIASYALVAFRNDtWEAIEAGIKYMFVGSLASSMVLLGIALLYGQYGTLNMaylavkmsenPTVVAKIALALFIAG 229

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269  99 LAMKLGLTPLHFWLPEVLQG--TTLKTALIITTWQKLAPAA----LLYLVQHSTN--PAILLTMGIMSTIVGGWGGLNQT 170
Cdd:PRK08376 230 LAMKSGAVPVHMWLPDAYPAapSSISAMLLVIKQAGLYALArvlfSIYGPAINLAtvGWVIIILGCLTMFVGVAMAVVQK 309

                        170
                 ....*....|....*..
gi 564732269 171 QMRKIMAFSSIANLGWM 187
Cdd:PRK08376 310 DVKRLLAYHSVSQIGYM 326
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 93-264 2.11e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 45.88  E-value: 2.11e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269  93 ILLTMALAMKLGLTPLHFWLPEV-----------LQGTTLKTA--LIITTWQKLAPAALLYLVQHSTNpaILLTMGIMST 159
Cdd:PRK12662 213 LFIMVGLFIKAALFPFHKWLIQAyseapsfisvfFSGTSTKVMiyLIIRIVYDVFKANFVFTTLPFNN--VFMILAALAI 290

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269 160 IVGGWGGLNQTQMRKIMAFSSIANLGWMATILTINPNIMLLNLTLYI----LMTTPLFLMLMFTSSK----TIKDLTTTW 231
Cdd:PRK12662 291 VFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIvnhsIVKSALFMVSGSISYHfgttKLEDCLNLW 370

                        170       180       190
                 ....*....|....*....|....*....|...
gi 564732269 232 TVSPPITAMLLMLLMSMGGLPPLTGFIPKWLIL 264
Cdd:PRK12662 371 KSMPKITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 35-264 3.30e-05

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 45.46  E-value: 3.30e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269  35 LAIIP---IIAKQHNPRATEATTKYFLTQAAASATILFASTINAWQTG--TWDITQLTNQP--------SCILLTMALAM 101
Cdd:COG1008  142 LMLIPmyfLIGIWGGERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGalTFDIAELAAAPlpltaqllLFLAFFIAFAV 221

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269 102 KLGLTPLHFWLPE-----------VLQGTTLKTA------LIITtwqkLAPAALLYLVQhstnpaILLTMGIMSTIVGGW 164
Cdd:COG1008  222 KVPMFPFHTWLPDahveaptagsvLLAGVLLKMGgygllrFALP----LFPEASAYFAP------LLAALGVIGIIYGAL 291

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269 165 GGLNQTQMRKIMAFSSIANLGWMAT-ILTINPNIM---LLNLTLYILMTTPLFLMLMF----TSSKTIKDLTTTWTVSPP 236
Cdd:COG1008  292 VALAQTDLKRLIAYSSVSHMGFVLLgIFALNPLGLqgaVLQMVSHGLITAALFLLVGVlydrTHTRDIADLGGLAKRMPV 371

                        250       260
                 ....*....|....*....|....*...
gi 564732269 237 ITAMLLMLLMSMGGLPPLTGFIPKWLIL 264
Cdd:COG1008  372 LAALFLLAALASLGLPGTSGFVGEFLVL 399
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 97-262 1.35e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 43.37  E-value: 1.35e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269  97 MALAMKLGLTPLHFWLPE-----------VLQGTTLKT---ALIITTWqklapaALLYLVQHSTNPAIlLTMGIMSTIVG 162
Cdd:MTH00226 238 LAMAVKIPIFPFHIWLPKahveapvagsvLLAGILLKLggyGLVRLSW------PILPLGAQNLAPAV-IAMGIVGIVYG 310

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269 163 GWGGLNQTQMRKIMAFSSIANLGwMATILTINPNIMLLNLTLYILMTTPLFLMLMFTSSKTIKDLTTT--------WTVS 234
Cdd:MTH00226 311 SFATCRQIDVKRLVAYSSVAHMG-LVSITLVTHDIIGLTGSIFIMLAHGIVSSLLFILVTILYDRHHTrlikyyrgLSIT 389

                        170       180
                 ....*....|....*....|....*....
gi 564732269 235 PPITAMLLMLLMSM-GGLPPLTGFIPKWL 262
Cdd:MTH00226 390 MPIWGTIMIVTSLAnVAVPPSGNFIGEYL 418
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 25-193 1.41e-04

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 43.59  E-value: 1.41e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269  25 LAWIGLELNTLAIIPIIAKQHNPRATEATTKYFLTQAAA------SATILFASTINAWQTGTWDITQLTNQP-------- 90
Cdd:PRK08676 126 LFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNWTELAAHAsllspsvl 205

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269  91 --SCILLTMALAMKLGLTPLHFWLPEV-LQGTTLKTALIITTWQKLAPAALL--YLVQHSTNPA-----ILLTMGIMSTI 160
Cdd:PRK08676 206 gaSFLFIFIGFLAKSGLVPFHTWLPAAyAKAPSVVSALLSGTVLNIGIYGILrlSALLRQSGAAeqfsnVLIGLGIFSIA 285

                        170       180       190
                 ....*....|....*....|....*....|...
gi 564732269 161 VGGWGGLNQTQMRKIMAFSSIANLGWMATILTI 193
Cdd:PRK08676 286 VAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGI 318
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 93-265 4.74e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 41.87  E-value: 4.74e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269  93 ILLTMALAMKLGLTPLHFWLPEVLQGTTLKTALIITTWQKLAPAALLY----LVQHSTNPAILLTM-GIMSTIVGGWGGL 167
Cdd:MTH00032 229 ILLLIGCIGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLMIrsfpLFEKAPLTLLIITIfGALTAFFAATVGL 308

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269 168 NQTQMRKIMAFSSIANLGWMATILTINPNimlLNLTLYILMTTPLFLMLMFTSSKTIKDLTTT----------WTVSPPI 237
Cdd:MTH00032 309 VQNDLKKVIAYSTCSQLGYMVLIIGIEGS---HNVGLFHLVNHAFFKALLFLSAGSVIHSTTVdeqdmrkmggLIHSIPF 385

                        170       180
                 ....*....|....*....|....*....
gi 564732269 238 TAMLLML-LMSMGGLPPLTGFIPKWLILQ 265
Cdd:MTH00032 386 TYTMMLIgSFSIMGLPYLTGFYSKDLILE 414
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 52-185 9.20e-04

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 40.96  E-value: 9.20e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269  52 ATTKYFLTQAAASATILFA----STINAWQTGTWDITQLTNQPSC--------ILLTMALAMKLGLTPLHFWLPE----- 114
Cdd:PRK05846 162 AATKFFLYTLLGSLLMLVAiiylVVVYYNATGTFDIADLLNLPLPpgvqywlfLAFFIAFAVKMPMFPLHTWLPDahvqa 241

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564732269 115 ------VLQGTTLKTAL--IITTWQKLAPAALLYLVqhstnpAILLTMGIMSTIVGGWGGLNQTQMRKIMAFSSIANLG 185
Cdd:PRK05846 242 ptagsvLLAGILLKMGAygLLRFSLPLFPDASHEFA------PIIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMG 314
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 92-224 9.65e-04

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 40.83  E-value: 9.65e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269  92 CILLTMALAMKLGLTPLHFWLPEVLQGTTLKTALIITTWQKLAPAALL-----YLVQHSTNPAILLTMGIMSTIVGGWGG 166
Cdd:MTH00020 213 CLFLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLirsspLFEQAPLALIIVTIVGSLTVFFAATVG 292

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 564732269 167 LNQTQMRKIMAFSSIANLGWMATILTINpnimLLNLTLYILMTTPLFLMLMFTSSKTI 224
Cdd:MTH00020 293 LVQNDLKKVIAYSTCSQLGYMVVACGLS----HYSISLFHLMNHAFFKALLFLSAGSV 346
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 2-193 9.82e-04

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 40.91  E-value: 9.82e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269   2 MYALIMSSVATGTIITMTSYHwllAWIGLELNTLAIIPIIAKQHNPRATEATTKYFLTQAAASATILFASTINAWQTGTW 81
Cdd:PRK08377 112 MLFLLLMLGATGMIATGDIFN---LFVFMEITAITAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLIGVALIYGATGTL 188

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269  82 DITQLTNQPSCI----------LLTMALAMKLGLTPLHFWLPEVLQGT----TLKTALIITTWQKLAPAALLYLVQH--- 144
Cdd:PRK08377 189 NMAHIAQLAGTIdptvaqvglaLLIFGLAVEAELFPLNAWAPDAYQAAphpiTVMFSAFVVKAGLYAMARILYLMQNang 268

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 564732269 145 -STNPAILLTMGIMSTIVGGWGGLNQTQMRKIMAFSSIANLGWMATILTI 193
Cdd:PRK08377 269 wSSVLKLVIIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALAL 318
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 104-265 1.19e-03

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 40.58  E-value: 1.19e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269 104 GLTPLHFWLPEV-LQGTTLKTALIITTWQKLAPAALLYLVQHSTNPAI-----LLTMGIMSTIVGGWGGLNQTQMRKIMA 177
Cdd:PRK08042 195 GIIPLHGWVPQAhANASAPAAALFSTVVMKIGLLGILTLSLLGGNAPLwwgvaLLVLGMITAFVGGLYALMEHNIQRLLA 274

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269 178 FSSIANLG--------WMATILTINPNIMLLNLT--LYILMTTPLFLMLMF---------TSSKTIKDLTTTWTVSPPIT 238
Cdd:PRK08042 275 YHTLENIGiillglgaGVTGIALEQPALIALGLVggLYHLLNHSLFKSVLFlgagsvwfrTGHRDIEKLGGIGKKMPVIS 354

                        170       180
                 ....*....|....*....|....*..
gi 564732269 239 AMLLMLLMSMGGLPPLTGFIPKWLILQ 265
Cdd:PRK08042 355 IAMLVGLMAMAALPPLNGFAGEWVIYQ 381
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 75-187 1.42e-03

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 40.52  E-value: 1.42e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269  75 AWQTGTWDITQLTNQPS-----------CILLTMALAMKLGLTPLHFWLPE----------VLQGTTLKTA---LIITTW 130
Cdd:COG1009  186 GAIAGTLNFSELLAAAPtilssplltliLLLLLLGAFGKSAQFPLHFWLPDamegptpvsaLLHAATMVKAgvyLLARLS 265

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 564732269 131 Q--KLAPAALLylvqhstnpaILLTMGIMSTIVGGWGGLNQTQMRKIMAFSSIANLGWM 187
Cdd:COG1009  266 PlfALSPVWLT----------VVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYM 314
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
93-265 1.77e-03

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 39.93  E-value: 1.77e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269  93 ILLTMALAMKLGLTPLhFWLPEVLQG-TTLKTALIITTWQKLAPAAL------LYLVQHSTNPAILLTMGIMSTIVGGWG 165
Cdd:PRK12663 211 LLFLLAFGMKAALFPF-MWLPAAYHTpNTEVAALFAALLTKVGIYALirvftlLFPQERELLHPLLATMAAITMVIGALG 289

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269 166 GLNQTQMRKIMAFSSIANLGWMATILTINpNIMLLNLTLY-----ILMTTPLFL----MLMFTSSKTIKDLTTTWTVSPP 236
Cdd:PRK12663 290 ALAYKDIRRIAGYQVISSIGFILLGLALG-TPAGINGAIFylvhdMVVKTALFLiagsLVRLTGYRSLQYLGGLYRKEPL 368

                        170       180
                 ....*....|....*....|....*....
gi 564732269 237 ITAMLLMLLMSMGGLPPLTGFIPKWLILQ 265
Cdd:PRK12663 369 FGALFLILIFAIGGLPPFSGFWGKVLLVQ 397
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
3-187 2.08e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 39.68  E-value: 2.08e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269   3 YALIMSSVATGTIITMTSYHWLL---AW--IGLELNTLaiipIIAKQHNPRATEATTKYFLTQAAASATILFASTINAWQ 77
Cdd:PRK08168 102 YVRALAGVLAAVHLLVLSDHLLVliaAWaaISLALHRL----LCFYPDRPFARLAAHKKFIADRLAELLLLAAAALAYLE 177

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269  78 TGTWDITQLTN-----------QPSCILLTMALAMKLGLTPLHFWLPEVLQGTTLKTALIITTWQKLAPAALLY---LVQ 143
Cdd:PRK08168 178 VGSLSLSALWAhlaaqgaspslQAAALLLVLAVILKTAQLPVHGWLIQVMEAPTPVSALLHAGVVNLGGFVLIRfapLLE 257

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 564732269 144 HSTnPA--ILLTMGIMSTIVGGWGGLNQTQMRKIMAFSSIANLGWM 187
Cdd:PRK08168 258 QAP-PArwLLVLVGLATAVLAGLVMLTRISIKVRLAWSTVAQMGFM 302
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
 21-267 2.31e-03

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 39.87  E-value: 2.31e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269  21 YHWLLAWiglELNTLA-IIPIIAKQHNPRATEATTKYFLTQAAASATILFASTINAWQTGTWDITQLTNQP------SCI 93
Cdd:PRK06521 136 FSFLVAW---ETMSLSsWFLVIANHREAEIRRAGFLYLLMAHAGALAILLAFGLLARESGSYDFAAMRAAHlspfwaSLV 212

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269  94 LLTMAL--AMKLGLTPLHFWLPE-----------VLQGTTLKTAL--IITTWQKLAPAALLYLvqhstnPAILLTMGIMS 158
Cdd:PRK06521 213 FLLALFgfGAKAGLVPLHVWLPRahpaapshvsaLMSGVMLKVAIygILRVVFDLLGAPGWWW------GVLVLALGAIS 286

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269 159 TIVGGWGGLNQTQMRKIMAFSSIANLGW--------MATILTINPNIMLLNLT--LYILMTTPLFLMLMFTSSKTIkdLT 228
Cdd:PRK06521 287 AVLGVLYALAEHDLKRLLAYSTIENIGIifvglglaMVFIAYGMPLLAALALTaaLYHLLNHALFKSLLFLGAGAV--LH 364

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|
gi 564732269 229 TTWTVS----------PPITAMLLML-LMSMGGLPPLTGFIPKWLILQEL 267
Cdd:PRK06521 365 ATGTRDmeklgglirrMPWTAWAFLIgCLAISALPPLNGFVSEWLLLQSL 414
PRK12650 PRK12650
DUF4040 family protein;
25-260 2.78e-03

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 39.64  E-value: 2.78e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269  25 LAWIGLELNTLAIIPIIAKQhNPRATEATTKYFLTQAAASATILFASTINAWQTGTWDITQLTNQPS-----------CI 93
Cdd:PRK12650 134 VLFVAWELVSLASFFLIARS-GSGGEAGSIRTLILTFFGGLTLLAAVAIAATQTGTTSLSGILHSDVwaekpglttvvAV 212

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269  94 LLTMALAMKLGLTPLHFWLPEVLQGTTLKTALiittwqkLAPAAL----LYLVQH-----STNPA---ILLTMGIMSTIV 161
Cdd:PRK12650 213 LIAVAAFTKSAQFPFHFWLPEAMAAITPVSAF-------LHAAAVvkagIYLLLRfspvfHDVAVwnwLLIIVGMITALM 285

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269 162 GGWGGLNQTQMRKIMAFSSIANLGWM-ATILTINPNIM---LLNLTLYILMTTPLFLMLMF----TSSKTIKDLTTTWTV 233
Cdd:PRK12650 286 GAVFAVQKTDLKKLTAYSTVSQLGWIvATIGVGTPFALtaaVVHTLAHALFKSSLFMLIGVvdhqAGTRDIRRLGSLWRR 365

                        250       260
                 ....*....|....*....|....*..
gi 564732269 234 SPPITAMLLMLLMSMGGLPPLTGFIPK 260
Cdd:PRK12650 366 MPFTFVSVTIAALSMAAVPPLFGFVSK 392
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 25-265 4.31e-03

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 38.76  E-value: 4.31e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269  25 LAWIGLELNTLAIIPIIAKQHNPRATEATTKYFLTQAAASA-----TILF---ASTINAWQTGTWDITQLTNQPSC---I 93
Cdd:PRK06458 132 LMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAfalfgTILVyanAATVMGDGEMAILWTELLKHASLldpT 211

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269  94 LLTMALAM-------KLGLTPLHFWLPE-----------VLQGTTLKTAL-IITTWQKLAPAALlylvQHSTNPAILLTM 154
Cdd:PRK06458 212 LMKLAFVFlligfgtKVGLFPMHAWLPDahseapspvsaLLSGVLLNVALyAVLRYYILIDAAI----GSDFPGRLLLIF 287

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269 155 GIMSTIVGGWGGLNQTQMRKIMAFSSIANLGWMATILTINPNI----MLLNLTLYILMTTPLFL----MLMFTSSKTIKD 226
Cdd:PRK06458 288 GLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIGGPLgifaALLHMLNHSLTKSAIFFasgnVLQKYGTRDINV 367

                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 564732269 227 LTTTWTVSPPITAMLLMLLMSMGGLPPLTGFIPKWLILQ 265
Cdd:PRK06458 368 IRGLLKVSPLTGWGLMLGALAIAGMPPFGVFISEFLILT 406
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 24-265 5.38e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 38.59  E-value: 5.38e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269  24 LLAWIGLELntLAIIPIIAKQhNPRATEATTKYFLTQAAASATILFASTINAWQtGTWDITQLTNQPSCILLTMAL---A 100
Cdd:MTH00207 114 LLGWDGLGL--VSFILVIYYQ-NPKSLGAGMITALTNRIGDVMLLLSIGWTLNQ-GHWSITNMWQTDMNNYIALSImiaA 189

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269 101 M-KLGLTPLHFWLPEVLQGTTLKTALIITTWQKLAPAALL---YLVQHST---NPAILLTmGIMSTIVGGWGGLNQTQMR 173
Cdd:MTH00207 190 MtKSAQMPFSSWLPAAMAAPTPVSALVHSSTLVTAGVFLLirfYPFLSSTywfNPALLLT-ASLTMLMAGLSAMTECDMK 268

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269 174 KIMAFSSIANLGWMATILTINpnimLLNLTLYILMTTPLFLMLMFTSSKTI-------KDLTT---TWTVSPPITAMLLM 243
Cdd:MTH00207 269 KIIALSTLSQLGVMMASLGLG----MPKLALFHLITHALFKALLFVCAGSLihshhhsQDLRTmgnLTNQMPLTTSCLLI 344

                        250       260
                 ....*....|....*....|..
gi 564732269 244 LLMSMGGLPPLTGFIPKWLILQ 265
Cdd:MTH00207 345 ANLALCGSPFLSGFYSKDLILE 366
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
92-187 5.71e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 38.47  E-value: 5.71e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564732269  92 CILLTMALAMKLGLTPLHFWLPEVLQGTTLKTALIITTwqkLAPAALLYLVQ-----HSTNPAILLTMGIMSTI---VGG 163
Cdd:PRK07376 230 CILVFLGPMAKSAQFPLHVWLPDAMEGPTPISALIHAA---TMVAAGVFLVArmypvFEQFPAVMTVIAWTGAItafLGA 306

                         90       100
                 ....*....|....*....|....
gi 564732269 164 WGGLNQTQMRKIMAFSSIANLGWM 187
Cdd:PRK07376 307 SIALTQNDIKKGLAYSTISQLGYM 330
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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