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Conserved domains on  [gi|565983493|gb|AHC29165|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Parvoscincus decipiens]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475913)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-341 5.21e-145

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 413.05  E-value: 5.21e-145
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493   1 MNPIMMSIIISSLALGTVITMSSIHWLLAWVGLELNTLAIIPIIAKQHHPRATEATTKYFLTQAAASATILFSSTTNAWS 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493  81 TGTWDIMQLTDPYACIMLTMALSMKLGLAPLHFWLPEVLQGSSLKTALIITTWQKLAPMTLLYLTHHSLHTTTLLTMGLL 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPTNPTLLITLGLTS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493 161 STlIGGWGGLNQTQARKIMAYSSIAHLGWMASILTLSPNLMLLNLTLYIMMTLSTFMMLIFSSSKTIKDLTTSWTISPTT 240
Cdd:MTH00135 161 TL-VGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493 241 TALMFMLLMSMAGLPPLTGFMPKWLILQDLTSHNLPMMAIFMAMSALLSLFFYLRLTYMTTLTMSPTTTQSKLKWRFQPK 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319

                        330       340
                 ....*....|....*....|.
gi 565983493 321 LKTTLLSMTTMMSTLLLPLTP 341
Cdd:MTH00135 320 QLTLPLAISTTATLMLLPLTP 340
 
Name Accession Description Interval E-value
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-341 5.21e-145

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 413.05  E-value: 5.21e-145
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493   1 MNPIMMSIIISSLALGTVITMSSIHWLLAWVGLELNTLAIIPIIAKQHHPRATEATTKYFLTQAAASATILFSSTTNAWS 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493  81 TGTWDIMQLTDPYACIMLTMALSMKLGLAPLHFWLPEVLQGSSLKTALIITTWQKLAPMTLLYLTHHSLHTTTLLTMGLL 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPTNPTLLITLGLTS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493 161 STlIGGWGGLNQTQARKIMAYSSIAHLGWMASILTLSPNLMLLNLTLYIMMTLSTFMMLIFSSSKTIKDLTTSWTISPTT 240
Cdd:MTH00135 161 TL-VGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493 241 TALMFMLLMSMAGLPPLTGFMPKWLILQDLTSHNLPMMAIFMAMSALLSLFFYLRLTYMTTLTMSPTTTQSKLKWRFQPK 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319

                        330       340
                 ....*....|....*....|.
gi 565983493 321 LKTTLLSMTTMMSTLLLPLTP 341
Cdd:MTH00135 320 QLTLPLAISTTATLMLLPLTP 340
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-299 3.24e-30

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 119.84  E-value: 3.24e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493  14 ALGTVITMSSIHWLLAWVGLELNTLAIIPIIA-KQHHPRATEATTKYFLTQAAASATILFSSTTNAWSTGTWDIMQLTDP 92
Cdd:COG1007  112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLNLAGIAAA 191

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493  93 Y------------ACIMLTMALSMKLGLAPLHFWLPEVLQGSSLKTALIITTWQKLAPMTLLYLTHHSLHTTTLLTMGLL 160
Cdd:COG1007  192 LaagganspllllGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEAFPGLAADWQLL 271

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493 161 STLI-------GGWGGLNQTQARKIMAYSSIAHLGWM----ASILTLSPNLMLLNLTLYIMMTLSTFMMLIFSSSK---- 225
Cdd:COG1007  272 LAVLavlsmtvGNLAALAQTNVKRMLAYSSIAHAGYLllglAAGTPLGVSAALFYLLAYLFMNLGAFAVILLLSRKggea 351

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 565983493 226 -TIKDLTTSWTISPTTTALMFMLLMSMAGLPPLTGFMPKWLILQDLTSHNLPMMAIFMAMSALLSLFFYLRLTYM 299
Cdd:COG1007  352 eEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVKA 426
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-281 3.58e-24

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 100.08  E-value: 3.58e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493   23 SIHWLLAWVGLELNTLAIIPIIA-KQHHPRATEATTKYFLTQAAASATILFSSTTNAWSTGTWDIMQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493   91 DPYACIMLTMALSMKLGLAPLHFWLPEVLQGSSLK-TALIITTWQKLAP-----MTLLYLTHHSLHTTTLLTMGLLSTLI 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGGyglirRSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493  165 GGWGGLNQTQARKIMAYSSIAHLGWMASILTLSPN----LMLLNLTLYIMMTLSTFMM-----LIFSSSKTIKDLTTSWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIygiqAAIFHLLTHGLFSAGLFLCagsviYRRVHTRNIRDYGGLAK 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 565983493  236 ISPTTTALMFMLLMSMAGLPPLTGFMPKWLILQDLTSHNLPMMAIF 281
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLA 286
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 15-296 3.32e-22

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 96.94  E-value: 3.32e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493   15 LGTVITMSSIHWLLAWVGLELNTLAIIPIIA-KQHHPRATEATTKYFLTQAAASATILFSSTTNAWSTGTWDIMQLTDPY 93
Cdd:TIGR01770 113 LGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFL 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493   94 ACIMLT------------MALSMKLGLAPLHFWLPEVLQGSSLKTALIITTWQKLAP-------MTLLYLTHHSLHTTTL 154
Cdd:TIGR01770 193 SNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIfavflrlFLYILFGFSEAWQIFL 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493  155 LTMGLLSTLIGGWGGLNQTQARKIMAYSSIAHLGW-MASILTLSPNLM---LLNLTLYIMMTLSTFMMLIFSSS------ 224
Cdd:TIGR01770 273 AIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYiLIGLLAGTLEGIkavLFYIFIYALMSLGAFGVLSLLRSykdewi 352

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 565983493  225 KTIKDLTTSWTISPTTTALMFMLLMSMAGLPPLTGFMPKWLILQDLTSHNLPMMAIFMAMSALLSLFFYLRL 296
Cdd:TIGR01770 353 EYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV 424
 
Name Accession Description Interval E-value
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-341 5.21e-145

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 413.05  E-value: 5.21e-145
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493   1 MNPIMMSIIISSLALGTVITMSSIHWLLAWVGLELNTLAIIPIIAKQHHPRATEATTKYFLTQAAASATILFSSTTNAWS 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493  81 TGTWDIMQLTDPYACIMLTMALSMKLGLAPLHFWLPEVLQGSSLKTALIITTWQKLAPMTLLYLTHHSLHTTTLLTMGLL 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPTNPTLLITLGLTS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493 161 STlIGGWGGLNQTQARKIMAYSSIAHLGWMASILTLSPNLMLLNLTLYIMMTLSTFMMLIFSSSKTIKDLTTSWTISPTT 240
Cdd:MTH00135 161 TL-VGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493 241 TALMFMLLMSMAGLPPLTGFMPKWLILQDLTSHNLPMMAIFMAMSALLSLFFYLRLTYMTTLTMSPTTTQSKLKWRFQPK 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319

                        330       340
                 ....*....|....*....|.
gi 565983493 321 LKTTLLSMTTMMSTLLLPLTP 341
Cdd:MTH00135 320 QLTLPLAISTTATLMLLPLTP 340
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-342 1.19e-137

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 394.57  E-value: 1.19e-137
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493   1 MNPIMMSIIISSLALGTVITMSSIHWLLAWVGLELNTLAIIPIIAKQHHPRATEATTKYFLTQAAASATILFSSTTNAWS 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493  81 TGTWDIMQLTDPYACIMLTMALSMKLGLAPLHFWLPEVLQGSSLKTALIITTWQKLAPMTLLYLTHHSLHTTTLLTMGLL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493 161 STLIGGWGGLNQTQARKIMAYSSIAHLGWMASILTLSPNLMLLNLTLYIMMTLSTFMMLIFSSSKTIKDLTTSWTISPTT 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493 241 TALMFMLLMSMAGLPPLTGFMPKWLILQDLTSHNLPMMAIFMAMSALLSLFFYLRLTYMTTLTMSPTTTQSKLKWRFQPK 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|..
gi 565983493 321 lKTTLLSMTTMMSTLLLPLTPM 342
Cdd:MTH00112 321 -KNTLTATLTTLSTLLLPLSPM 341
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-341 1.39e-132

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 381.58  E-value: 1.39e-132
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493   1 MNPIMMSIIISSLALGTVITMSSIHWLLAWVGLELNTLAIIPIIAKQHHPRATEATTKYFLTQAAASATILFSSTTNAWS 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493  81 TGTWDIMQLTDPYACIMLTMALSMKLGLAPLHFWLPEVLQGSSLKTALIITTWQKLAPMTLLYLTHHSLHTTTLLTMGLL 160
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493 161 STLIGGWGGLNQTQARKIMAYSSIAHLGWMASILTLSPNLMLLNLTLYIMMTLSTFMMLIFSSSKTIKDLTTSWTISPTT 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493 241 TALMFMLLMSMAGLPPLTGFMPKWLILQDLTSHNLPMMAIFMAMSALLSLFFYLRLTYMTTLTMSPTTTQSKLKWRFQPK 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320

                        330       340
                 ....*....|....*....|.
gi 565983493 321 lKTTLLSMTTMMSTLLLPLTP 341
Cdd:MTH00070 321 -TNNLLSLTIILSLMLLPITP 340
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-342 1.30e-123

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 358.77  E-value: 1.30e-123
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493   1 MNPIMMSIIISSLALGTVITMSSIHWLLAWVGLELNTLAIIPIIAKQHHPRATEATTKYFLTQAAASATILFSSTTNAWS 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493  81 TGTWDIMQLTDPYACIMLTMALSMKLGLAPLHFWLPEVLQGSSLKTALIITTWQKLAPMTLLYLTHHSLHTTTLLTMGLL 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493 161 STLIGGWGGLNQTQARKIMAYSSIAHLGWMASILTLSPNLMLLNLTLYIMMTLSTFMMLIFSSSKTIKDLTTSWTISPTT 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493 241 TALMFMLLMSMAGLPPLTGFMPKWLILQDLTSHNLPMMAIFMAMSALLSLFFYLRLTYMTTLTMSPTTTQSKLKWRFQPK 320
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320

                        330       340
                 ....*....|....*....|..
gi 565983493 321 LKTTLLSMTTMMSTLLLPLTPM 342
Cdd:MTH00105 321 KPMTLLPTLIILSTMLLPLTPM 342
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-341 1.79e-91

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 276.85  E-value: 1.79e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493   1 MNPIMMSIIISSLALGTVITMSSIHWLLAWVGLELNTLAIIPIIAKQHHPRATEATTKYFLTQAAASATILFSSTTNAWS 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493  81 TGTWDIMQLTDPYACIMLTMALSMKLGLAPLHFWLPEVLQGSSLKTALIITTWQKLAPMTLLYLTHHSLHTTTLLTMGLL 160
Cdd:MTH00200  81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493 161 STLIGGWGGLNQTQARKIMAYSSIAHLGWMASILTLSPNLMLLNLTLYIMMTLSTFMMLIFSSSKTIKDLTTSWTISPTT 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493 241 TALMFMLLMSMAGLPPLTGFMPKWLILQDLTSHNLPMMAIFMAMSALLSLFFYLRLTYMTTLTMSPTTTQSKLKWRFQPk 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKS- 319

                        330       340
                 ....*....|....*....|.
gi 565983493 321 LKTTLLSMTTMMSTLLLPLTP 341
Cdd:MTH00200 320 NSNLLVGLLLLLSILGLPLTP 340
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-298 8.96e-89

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 270.26  E-value: 8.96e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493   1 MNPIMMSIIISSLALGTVITMSSIHWLLAWVGLELNTLAIIPIIAKQHHPRATEATTKYFLTQAAASATILFSSTTNAWS 80
Cdd:MTH00041   1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493  81 TGTWDIMQLTDPYACIMLTMALSMKLGLAPLHFWLPEVLQGSSLKTALIITTWQKLAPMTLLYLTHHSLHTTTLLTMGLL 160
Cdd:MTH00041  81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493 161 STLIGGWGGLNQTQARKIMAYSSIAHLGWMASILTLSPNLMLLNLTLYIMMTLSTFMMLIFSSSKTIKDLTTSWTISPTT 240
Cdd:MTH00041 161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 565983493 241 TALMFMLLMSMAGLPPLTGFMPKWLILQDLTSHNLPMMAIFMAMSALLSLFFYLRLTY 298
Cdd:MTH00041 241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISF 298
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-339 1.19e-54

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 181.95  E-value: 1.19e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493   1 MNPIMMSIIISSLALGTVITMSSIHWLLAWVGLELNTLAIIPIIAKQHHPRATEATTKYFLTQAAASATILFSSTTNAWS 80
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLN 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493  81 tgtwdiMQLTDPYACIMLTMALSMKLGLAPLHFWLPEVLQGSSLKTALIITTWQKLAPMTLLYLTHHSLHTTTLLTMGLL 160
Cdd:MTH00160  82 ------LMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNNFIIIIIILSAI 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493 161 stlIGGWGGLNQTQARKIMAYSSIAHLGWMASILTLSPNLMLLNLTLYIMMTLSTFMMLIFSSSKTIKDLTTSWTISPTT 240
Cdd:MTH00160 156 ---IGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493 241 TALMFMLLMSMAGLPPLTGFMPKWLILQDLTSHNLPMMAIFMAMSALLSLFFYLRLTYMTTLTMSPTTTQSKLKWRFQPK 320
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFS 312

                        330
                 ....*....|....*....
gi 565983493 321 LKTTLLSMTTMMSTLLLPL 339
Cdd:MTH00160 313 LILNFLSFISLFGLILSSL 331
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 4-299 8.52e-52

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 174.30  E-value: 8.52e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493   4 IMMSIIISSLALGTVITMSSIHWLLAWVGLELNTLAIIPIIAKQHHPRATEATTKYFLTQAAASATILFSSTTNAWSTGT 83
Cdd:MTH00144   4 PSNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFS 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493  84 WDIMqltdpyacIMLTMALSMKLGLAPLHFWLPEVLQGSSLKTALIITTWQKLAPMTLL-YLTHHSLHTTTLLTMGLLST 162
Cdd:MTH00144  84 WFSM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLsNFLDLYWLAYLLCVISVLSA 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493 163 LIGGWGGLNQTQARKIMAYSSIAHLGWMASILTLSPNLMLLNLTLYIMMTLSTFMMLIFSSSKTIKDLTTSWTISPTTTA 242
Cdd:MTH00144 156 LVGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSLKPSYKTGLS 235

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 565983493 243 LMFMLLmSMAGLPPLTGFMPKWLILQDLTSHNLPMMAIFMAMSALLSLFFYLRLTYM 299
Cdd:MTH00144 236 IISLLL-SLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFS 291
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 6-296 5.84e-46

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 159.17  E-value: 5.84e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493   6 MSIIISSLALGTVITMSSIHWLLAWVGLELNTLAIIPIIAKQHHPRATEATTKYFLTQAAASATILFSSTTnawstgTWD 85
Cdd:MTH00011   8 MFLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTM------MWS 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493  86 IMQLTDPYACIMLTMALSMKLGLAPLHFWLPEVLQGSSLKTALIITTWQKLAPMTLLYLTHHSLHTTTLLTMGLLSTLIG 165
Cdd:MTH00011  82 FPSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAG 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493 166 GWGGLNQTQARKIMAYSSIAHLGWMASILTLSPNLMLLNLTLYIMMTLSTFMMLIFSSSKTIKDLTTSWTISPTTTALMF 245
Cdd:MTH00011 162 GLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLF 241

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 565983493 246 MLLMSMAGLPPLTGFMPKWLILQDLTSHNLPMMAIFMAMSALLSLFFYLRL 296
Cdd:MTH00011 242 IMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNL 292
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 7-332 2.21e-35

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 130.95  E-value: 2.21e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493   7 SIIISSLALGTVITMSSIHWLLAWVGLELNTLAIIPIIAKQHHPRATEATTKYFLTQAAASATILFSSTTNAWSTgtwdi 86
Cdd:MTH00197   1 FLFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL----- 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493  87 mqLTDPYACIMLTMALSMKLGLAPLHFWLPEVLQGSSLKTALIITTWQKLAPMTLLylTHHSLHTTTLLTMGLLSTLIGG 166
Cdd:MTH00197  76 --YLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLIL--AFNSSSFMGLLICSVLSSLIGG 151

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493 167 WGGLNQTQARKIMAYSSIAHLGWMASILTLSPNLMLLNLTLYIMMTLSTFMML---IFSSSKTIKDLTTSWTISPTTTAL 243
Cdd:MTH00197 152 IGGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLsknNLSSLNQQYSNPESMSSNLVFLGL 231

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493 244 MFmllMSMAGLPPLTGFMPKWLILQDLTSHNLPMMAIFMAMSALLSLFFYLRLTYMTTLTMSPTTTQSKLKWRFQPKLKT 323
Cdd:MTH00197 232 SF---LSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMKINLLYSGLFI 308


                 ....*....
gi 565983493 324 TLLSMTTMM 332
Cdd:MTH00197 309 LLMMMLPLL 317
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-299 3.24e-30

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 119.84  E-value: 3.24e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493  14 ALGTVITMSSIHWLLAWVGLELNTLAIIPIIA-KQHHPRATEATTKYFLTQAAASATILFSSTTNAWSTGTWDIMQLTDP 92
Cdd:COG1007  112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLNLAGIAAA 191

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493  93 Y------------ACIMLTMALSMKLGLAPLHFWLPEVLQGSSLKTALIITTWQKLAPMTLLYLTHHSLHTTTLLTMGLL 160
Cdd:COG1007  192 LaagganspllllGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEAFPGLAADWQLL 271

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493 161 STLI-------GGWGGLNQTQARKIMAYSSIAHLGWM----ASILTLSPNLMLLNLTLYIMMTLSTFMMLIFSSSK---- 225
Cdd:COG1007  272 LAVLavlsmtvGNLAALAQTNVKRMLAYSSIAHAGYLllglAAGTPLGVSAALFYLLAYLFMNLGAFAVILLLSRKggea 351

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 565983493 226 -TIKDLTTSWTISPTTTALMFMLLMSMAGLPPLTGFMPKWLILQDLTSHNLPMMAIFMAMSALLSLFFYLRLTYM 299
Cdd:COG1007  352 eEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVKA 426
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
14-296 1.75e-27

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 112.22  E-value: 1.75e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493  14 ALGTVITMSSIHWLLAWVGLELNTLAIIPIIA-KQHHPRATEATTKYFLTQAAASATILFSSTTNAWSTGTWDIMQLTDP 92
Cdd:PRK05777 113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIAKA 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493  93 YA------------CIMLTMALSMKLGLAPLHFWLPEVLQGSSLKTALIITTWQKLAPMTLLYLTHHSLHTTTLLTMGLL 160
Cdd:PRK05777 193 LAdgsgnsllllfgLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLLRLLVVAFGGLSEDWQQV 272

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493 161 STLI-------GGWGGLNQTQARKIMAYSSIAHLGWM----ASILTLSPNLMLLNLTLYIMMTLSTFMMLIFSSSK---- 225
Cdd:PRK05777 273 LAIIaiasmlvGNLAALSQTNIKRLLAYSSIAHAGYLlvglAAGTAEGYSAVLFYLLAYLFMTLGAFGVISLLRRKggea 352

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 565983493 226 -TIKDLTTSWTISPTTTALMFMLLMSMAGLPPLTGFMPKWLILQDLTSHNLPMMAIFMAMSALLSLFFYLRL 296
Cdd:PRK05777 353 eSISDFAGLSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-281 3.58e-24

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 100.08  E-value: 3.58e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493   23 SIHWLLAWVGLELNTLAIIPIIA-KQHHPRATEATTKYFLTQAAASATILFSSTTNAWSTGTWDIMQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493   91 DPYACIMLTMALSMKLGLAPLHFWLPEVLQGSSLK-TALIITTWQKLAP-----MTLLYLTHHSLHTTTLLTMGLLSTLI 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGGyglirRSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493  165 GGWGGLNQTQARKIMAYSSIAHLGWMASILTLSPN----LMLLNLTLYIMMTLSTFMM-----LIFSSSKTIKDLTTSWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIygiqAAIFHLLTHGLFSAGLFLCagsviYRRVHTRNIRDYGGLAK 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 565983493  236 ISPTTTALMFMLLMSMAGLPPLTGFMPKWLILQDLTSHNLPMMAIF 281
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLA 286
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-296 9.08e-24

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 100.10  E-value: 9.08e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493  13 LALGTVITMSSIHWLLAWVGLELNTLAIIPIIA-KQHHPRATEATTKYFLTQAAASATILFSSTTNAWSTGTWDI----- 86
Cdd:MTH00196   2 VALGILCLISSSNWLSVYLAIELQTLSLFILIAqNRGSGYSAEAGLKYFVLGALSSGLFLFGCALLCGTTGGLHLsyinl 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493  87 --------MQLTDPYACIMLTMALSMKLGLAPLHFWLPEVLQGSSLKTALIITTWQKLAPMTLLylTHHSLHTTTLLTMG 158
Cdd:MTH00196  82 vlnsgqsfSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSIL--VSIGLNVNILLIGG 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493 159 LLSTLIGGWGGLNQTQARKIMAYSSIAHLGW------MASILTLSPNLMLlnLTLYIMMTLSTFMMLIfsSSKTIKDLTT 232
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFvlwgieIGSFESIQASLVY--LFIYIIMSICVFSIIL--ALNVYKNLII 235

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 565983493 233 SWT----ISPTTTALMFMLLMSMAGLPPLTGFMPKWLILQDLTSHNLPMMAIFMAMSALLSLFFYLRL 296
Cdd:MTH00196 236 EFSglsrRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 7-296 6.92e-23

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 98.94  E-value: 6.92e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493   7 SIIISSLALGTVITMSSIHWLLAWVGLELNTLAIIPIIA-KQHHPRATEATTKYFLTQAAASATILFSSTTNAWSTGTWD 85
Cdd:MTH00199 100 PILILIVALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETS 179

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493  86 IMQ----LTDPYACIMLTMALSMKLGLAPLHFWLPEVLQGSSLKTALIITTWQKLAPMTLLylTHHSLHTTTLLTMGLLS 161
Cdd:MTH00199 180 IQGinsiLTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSIL--VQIGPVTNVVLICAVLS 257

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493 162 TLIGGWGGLNQTQARKIMAYSSIAHLGWMASILTL----SPNLMLLNLTLYIMMTLSTFMMLIF--SSSKTIKDLTTSWT 235
Cdd:MTH00199 258 IIYGAIGALNQTKIKRLLAYSGIGHMGFILFGVAIgsfeSIQASLIYMIIYVIMSICSFSIILSlkLTKGLIVEVSGLSR 337

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 565983493 236 ISPTTTALMFMLLMSMAGLPPLTGFMPKWLILQDLTSHNLPMMAIFMAMSALLSLFFYLRL 296
Cdd:MTH00199 338 KNPVIALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 15-296 3.32e-22

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 96.94  E-value: 3.32e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493   15 LGTVITMSSIHWLLAWVGLELNTLAIIPIIA-KQHHPRATEATTKYFLTQAAASATILFSSTTNAWSTGTWDIMQLTDPY 93
Cdd:TIGR01770 113 LGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFL 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493   94 ACIMLT------------MALSMKLGLAPLHFWLPEVLQGSSLKTALIITTWQKLAP-------MTLLYLTHHSLHTTTL 154
Cdd:TIGR01770 193 SNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIfavflrlFLYILFGFSEAWQIFL 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493  155 LTMGLLSTLIGGWGGLNQTQARKIMAYSSIAHLGW-MASILTLSPNLM---LLNLTLYIMMTLSTFMMLIFSSS------ 224
Cdd:TIGR01770 273 AIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYiLIGLLAGTLEGIkavLFYIFIYALMSLGAFGVLSLLRSykdewi 352

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 565983493  225 KTIKDLTTSWTISPTTTALMFMLLMSMAGLPPLTGFMPKWLILQDLTSHNLPMMAIFMAMSALLSLFFYLRL 296
Cdd:TIGR01770 353 EYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV 424
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 30-296 2.94e-17

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 82.12  E-value: 2.94e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493  30 WVGLELNTLAIIPIIAKQHHPRATEATTKYFLTQAAASATILFSSTTNAWSTGTWDIMQL----------TDPYACIMLT 99
Cdd:COG0651  133 FVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLaarlaeldpgLLLAAFALLL 212

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493 100 MALSMKLGLAPLHFWLPE-----------VLQGSSLKTAL--IITTWqklapMTLLYLTHHSLHTTTLLTMGLLSTLIGG 166
Cdd:COG0651  213 VGFGIKAALFPLHFWLPDaypaapspvsaLLSGLLTKVGVyaILRVL-----TLLFGADPALFLGTLLLVLGLLTMLVGA 287

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493 167 WGGLNQTQARKIMAYSSIAHLGWMASILTLSPNLMLLNLTLYIMMTlSTFMMLIFSS---------SKTIKDLTTSWTIS 237
Cdd:COG0651  288 LGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLLNH-ALAKALLFLAagaieratgTRDLDKLGGLGKRM 366

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 565983493 238 PTTTALMFMLLMSMAGLPPLTGFMPKWLILQDLTSHNLPMMAIFMAMSALLSLFFYLRL 296
Cdd:COG0651  367 PLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 13-296 1.21e-13

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 71.81  E-value: 1.21e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493  13 LALGTVITMSSIHWLLAWVGLELNTLAIIPIIAKQHHPRAT---------EATTKYFLTQAAASATILFSS------TTN 77
Cdd:MTH00198 197 VGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCalyfgfTGN 276

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493  78 AWSTGT--------WDIMQLTDPYACIMLTMALSMKLGLAPLHFWLPEVLQGSSLKTALIITTWQKLAPMTLLylTHHSL 149
Cdd:MTH00198 277 EGMLGTilsatletTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILL--TSLVI 354

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493 150 HTTTLLTMGLLSTLIGGWGGLNQTQARKIMAYSSIAHLGWMASILTLSPNLMLLN----LTLYIMMTLSTFMMLI----- 220
Cdd:MTH00198 355 TSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQAswtyAVTYLVSALASFTVICtleef 434

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493 221 ----------------FSSSKTIKDLTTSWTISPTTTALMFMLLMSMAGLPPLTGFMPKWLIL----QDLTSHNLP---M 277
Cdd:MTH00198 435 gtrtptsrqrdgsfgnYNLVRRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFILvgsiKIAFSSSLSiyyL 514

                        330
                 ....*....|....*....
gi 565983493 278 MAIFMAMSALLSLFFYLRL 296
Cdd:MTH00198 515 VALFAIICTCISAFYYIRI 533
ndhB CHL00049
NADH dehydrogenase subunit 2
 51-263 1.87e-10

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 61.94  E-value: 1.87e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493  51 RATEATTKYFLTQAAASATILF----------------------SSTTNAWSTGTWdimqltdpYACIMLTMALSMKLGL 108
Cdd:CHL00049 159 RSNEATMKYLLMGGASSSILVYgfswlyglsggeielqeivnglINTQMYNSPGIS--------IALIFITVGIGFKLSL 230

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493 109 APLHFWLPEVLQGSSLKTALIITTWQKLAP-------MTLLYLTHHSLHTTTLLTMGLLSTLIGGWGGLNQTQARKIMAY 181
Cdd:CHL00049 231 APFHQWTPDVYEGSPTPVVAFLSVTSKVAAsalatriFDIPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAY 310

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493 182 SSIAHLGW-MASILTLSPNL----MLLNLTLYIMMTLSTFMMLIFSSSKT----IKDLTTSWTISPTTTALMFMLLMSMA 252
Cdd:CHL00049 311 SSIGQIGYvIIGIIVGDSNDgyasMITYMLFYIFMNLGTFACIVLFGLRTgtdnIRDYAGLYTKDPFLALSLALCLLSLG 390

                        250
                 ....*....|.
gi 565983493 253 GLPPLTGFMPK 263
Cdd:CHL00049 391 GIPPLAGFFGK 401
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 101-298 3.09e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 51.80  E-value: 3.09e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493 101 ALSMKLGLAPLHFWLPEVLQG-SSLKTALIITTWQKLA--PMTLLY-------LTHHSLHTTTLLTMGLLSTLIGGWGGL 170
Cdd:PRK08375 211 ALALKAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAvyALIRIYftvfggdFRFALGLGWLLAVLALLSMLVGSLAAL 290

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493 171 NQTQARKIMAYSSIAHLGWMASILTLSPNLMLLNLTLYIM--------MTLSTFMMLIFSSSKTIKDLTTSWTISPTTTA 242
Cdd:PRK08375 291 GQDDVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLLhhalmkgaLFLAAGAIEVTYGTRRLSELSGLGRRMPLTAA 370

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 565983493 243 LMFMLLMSMAGLPPLTGFMPKWLILQDLTSHNLPMMAIFMAMSALLSLFFYLRLTY 298
Cdd:PRK08375 371 AFAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWY 426
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 164-298 1.27e-06

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 50.00  E-value: 1.27e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493 164 IGGWGGLNQTQARKIMAYSSIAHLGWMASILTLSPNLML-------LNLTLYIMMTLSTFMMLIFSSSKT-IKDLTTSWT 235
Cdd:PRK08668 285 VGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFagglfhvFNHALFKGLFFLIFAAVIYRTGTTkISEMGGLIE 364

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 565983493 236 ISPTTTALMFMLLMSMAGLPPLTGFMPKWLILQDLTSHNLPMMAIFMAMSALLSLFFYLRLTY 298
Cdd:PRK08668 365 KMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMAFFGSIGSFLYVFRPLA 427
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-263 1.39e-06

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 49.66  E-value: 1.39e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493  50 PRATEATTKYFLTQAAASATILF--------SSTTNAWSTGTWDIMQLTDPYACIMLTMAL---SMKLGLAPLHFWLPEV 118
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYgssllyglSGGSTQLSAIALALITSPSLGLALALVFVIagiAFKISAVPFHQWTPDV 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493 119 LQGSSLKTALIITTWQKLAP-------MTLLYLTHHSLHTTTLLTMGLLSTLIGGWGGLNQTQARKIMAYSSIAHLGWMA 191
Cdd:PRK02504 237 YEGSPTPVVAFLSVGSKAAGfalairlLVTAFPSFDEQWKLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVM 316

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493 192 SILTLSPN----LMLLNLTLYIMMTLSTFMMLIFSSSKT----IKDLTTSWTISPTTTALMFMLLMSMAGLPPLTGFMPK 263
Cdd:PRK02504 317 IGLVAGTEagyaSMVFYLLAYLFMNLGAFACVILFSLRTgtdqISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGFFGK 396
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 164-299 7.35e-05

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 44.37  E-value: 7.35e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493 164 IGGWGGLNQTQARKIMAYSSIAHLGWMasiltlspnLMLLNLTLYI-----MMTLSTFMMLIFSSSKTIkDLTTS----- 233
Cdd:COG1009  288 FAALIALAQTDIKRVLAYSTVSQLGYM---------FLALGVGAYVaalfhLLTHAFFKALLFLGAGSV-IHATGtrdir 357

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 565983493 234 -----WTISPTTTALMFMLLMSMAGLPPLTGFMPKWLILQD-LTSHNLPMMAIFMAM-SALLSLFFYLRLTYM 299
Cdd:COG1009  358 kmgglRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEAaLEAGGLGPLLLAVALlGAFLTAFYSFRLFFL 430
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 291-341 1.20e-04

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 39.16  E-value: 1.20e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 565983493  291 FFYLRLTYMTTLTMSPTTTQSKLKWRFQPKLKTTLLSMTTMMSTLLLPLTP 341
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLLLPTLTTLSILLLPLTP 51
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 95-299 1.77e-04

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 43.14  E-value: 1.77e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493  95 CIMLTMALSMKLGLAPLHFWLPEVLQGSSLKTALIITTWQKLAPMTLL-----YLTHHSLHTTTLLTMGLLSTLIGGWGG 169
Cdd:MTH00020 213 CLFLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLirsspLFEQAPLALIIVTIVGSLTVFFAATVG 292

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493 170 LNQTQARKIMAYSSIAHLGWMASILTLSpnlmLLNLTLYIMMTLSTFMMLIFSSSKTI-------KDLTTSWTIS---PT 239
Cdd:MTH00020 293 LVQNDLKKVIAYSTCSQLGYMVVACGLS----HYSISLFHLMNHAFFKALLFLSAGSVihalsdeQDMRKMGGLIsflPL 368

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 565983493 240 TTALMFMLLMSMAGLPPLTGFMPKWLILQ-DLTSHNLPMMAIFMAMSALLSLFFYLRLTYM 299
Cdd:MTH00020 369 TYIFFLIGSLSLMGFPYLTGFYSKDLILElAFGQYYLIFAYWLGCFSALLTAFYSIRLIYL 429
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 176-296 1.97e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 43.18  E-value: 1.97e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493 176 RKIMAYSSIAHLGWMASILTLSPNLMLLNLTLYIM---MTLSTFMMLIFSSS-----KTIKDLTTSWTISPTTTALMFML 247
Cdd:PRK12662 304 KRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVnhsIVKSALFMVSGSISyhfgtTKLEDCLNLWKSMPKITLAFVLL 383

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 565983493 248 LMSMAGLPPLTGFMPKWLILQDLTSHNLPMMAIFMAMSALLSLFFYLRL 296
Cdd:PRK12662 384 SLSLIGMPPTSGFVAKWYILDAFIKSNAWIGLVVLLVGSGLSVIYVWKI 432
PRK12650 PRK12650
DUF4040 family protein;
164-263 4.03e-04

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 42.34  E-value: 4.03e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493 164 IGGWGGLNQTQARKIMAYSSIAHLGWM-ASILTLSPnlmlLNLTLYIMMTL------STFMMLIF-----SSSKTIKDLT 231
Cdd:PRK12650 285 MGAVFAVQKTDLKKLTAYSTVSQLGWIvATIGVGTP----FALTAAVVHTLahalfkSSLFMLIGvvdhqAGTRDIRRLG 360

                         90       100       110
                 ....*....|....*....|....*....|..
gi 565983493 232 TSWTISPTTTALMFMLLMSMAGLPPLTGFMPK 263
Cdd:PRK12650 361 SLWRRMPFTFVSVTIAALSMAAVPPLFGFVSK 392
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 30-298 1.08e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 40.85  E-value: 1.08e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493  30 WVGLELNTLAIIPIIAKQHH-PRATEATTKYFLTQAAASATILFSSTTNAWSTGTWDI----------MQLTDPYACIML 98
Cdd:PRK08376 147 FVFLEIMSIASYALVAFRNDtWEAIEAGIKYMFVGSLASSMVLLGIALLYGQYGTLNMaylavkmsenPTVVAKIALALF 226

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493  99 TMALSMKLGLAPLHFWLPEVLQG--SSLKTALIITTWQKL-APMTLLYLTHHSLHTTTL-----LTMGLLSTLIGGWGGL 170
Cdd:PRK08376 227 IAGLAMKSGAVPVHMWLPDAYPAapSSISAMLLVIKQAGLyALARVLFSIYGPAINLATvgwviIILGCLTMFVGVAMAV 306

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493 171 NQTQARKIMAYSSIAHLGWM-----ASILTLSPNLM------LLNLTLYIMMTLSTFMMLIFSSSKTIKDLTTSWTIS-- 237
Cdd:PRK08376 307 VQKDVKRLLAYHSVSQIGYMllglgVGLAALGDPAMasygeiALAGGIYHIVNHALYKALLFLTAGAVIYETGTRNLNel 386

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 565983493 238 -------PTTTALMFMLLMSMAGLPPLTGFMPKWLILQDLTSHNlPMMAIFMAMSALLSLFFYLRLTY 298
Cdd:PRK08376 387 gglartmPKTTIAFLIGAAAIVGLPPFNGFASKWLIYESSALFN-PILGVIAMIGSVLTLASFVKVFH 453
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
164-296 1.44e-03

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 40.32  E-value: 1.44e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493 164 IGGWGGLNQTQARKIMAYSSIAHLGWMASILTLSPNLMLLNLTLYIM--MTLSTFMMLI------FSSSKTIKDLTTSWT 235
Cdd:PRK12663 285 IGALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGINGAIFYLVhdMVVKTALFLIagslvrLTGYRSLQYLGGLYR 364

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 565983493 236 ISPTTTALMFMLLMSMAGLPPLTGFMPKWLILQDLTSHNLPMMAIFMAMSALLSLFFYLRL 296
Cdd:PRK12663 365 KEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQGALDNGAYILLALMLITSLITMYSLFRI 425
PRK12646 PRK12646
DUF4040 family protein;
92-299 1.89e-03

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 40.12  E-value: 1.89e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493  92 PYACIMLTMALSMKLGLAPLHFWLPEVLQGSSLKTALIITTWQKLAPMTLLY-----LTHHSLHTTTLLTMGLLSTLIGG 166
Cdd:PRK12646 210 IPMIFMFLLGAFTKSAQFPFHIWLPRAMAAPTPVSAYLHSATMVKAGIFLLFrftplLGLSNMYIYIVTFVGLITMLFGS 289

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493 167 WGGLNQTQARKIMAYSSIAHLGWMASILTLSPNL-------------MLLNLTLYIMMTLSTFMMLIF---------SSS 224
Cdd:PRK12646 290 ITALKQWDLKGILAYSTISQLGMIMAMVGIGGGYaqhqqdaiasiyvFVLFAALFHLMNHAIFKCALFmgvgiidheAGT 369

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493 225 KTIKDLTTSWTISPTTTALMFMLLMSMAGLPPLTGFMPKWLILQDLTS------HNLPMMAIFMAMSALLSLFFYLRLTY 298
Cdd:PRK12646 370 RDIRILSGMRQLFPKMNLVMTIAALSMAGVPFLNGFLSKEMFLDALTQtgqlsqFSLISMIIIVFIGVIASIFTFTYALY 449


                 .
gi 565983493 299 M 299
Cdd:PRK12646 450 M 450
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 100-298 1.92e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 39.90  E-value: 1.92e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493 100 MALSMKLGLAPLHFWLPE-----------VLQGSSLKTA---LIITTW-------QKLAPMTLlylthhslhtttllTMG 158
Cdd:MTH00226 238 LAMAVKIPIFPFHIWLPKahveapvagsvLLAGILLKLGgygLVRLSWpilplgaQNLAPAVI--------------AMG 303

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493 159 LLSTLIGGWGGLNQTQARKIMAYSSIAHLGwMASILTLSPNLMLLNLTLYIMMTLSTFMMLIF---------SSSKTIKD 229
Cdd:MTH00226 304 IVGIVYGSFATCRQIDVKRLVAYSSVAHMG-LVSITLVTHDIIGLTGSIFIMLAHGIVSSLLFilvtilydrHHTRLIKY 382

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 565983493 230 LTTSWTISPTTTALMFMLLMSMAGLPPLTGFMPKWLILqdLTSHNL-PMMAIFMA----MSALLSLFFYLRLTY 298
Cdd:MTH00226 383 YRGLSITMPIWGTIMIVTSLANVAVPPSGNFIGEYLSI--LSSFNWnPIIGVFVCsgviLSAVYSFYFANRVTF 454
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 111-268 1.96e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 39.94  E-value: 1.96e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493 111 LHFWLPEVLQGSSLKTALIITTWQKLAPMTLLYLTHHS-----LHTTTLLTMGLLSTLIGGWGGLNQTQARKIMAYSSIA 185
Cdd:MTH00032 244 LHTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSFPLfekapLTLLIITIFGALTAFFAATVGLVQNDLKKVIAYSTCS 323

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493 186 HLGWMASILTLSPNLmllNLTLYIMMTLSTFMMLIFSSSKTIKDLTTS-----------WTISPTTTALMFMLLMSMAGL 254
Cdd:MTH00032 324 QLGYMVLIIGIEGSH---NVGLFHLVNHAFFKALLFLSAGSVIHSTTVdeqdmrkmgglIHSIPFTYTMMLIGSFSIMGL 400

                        170
                 ....*....|....
gi 565983493 255 PPLTGFMPKWLILQ 268
Cdd:MTH00032 401 PYLTGFYSKDLILE 414
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 55-280 2.67e-03

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 39.54  E-value: 2.67e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493   55 ATTKYFLTQAAAS----ATILFSSTTNAWSTGTWDIMQLTDPYACIMLTM-----ALSMKLGLAPLHFWLPEV-LQGSSL 124
Cdd:TIGR01972 157 AAMKFFLYTLAGSllmlLAILGLYFLGGGTFDLLELLNLPLPFGVQTWLFlaffiAFAVKVPLFPLHTWLPDAhVEAPTA 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493  125 KTALIITTWQKLAPMTL------LYLTHHSLHTTTLLTMGLLSTLIGGWGGLNQTQARKIMAYSSIAHLGWMAsILTLSP 198
Cdd:TIGR01972 237 GSVILAGVLLKMGTYGFlrfnlpLFPDASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVL-LGIFSF 315

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493  199 NLMLLNLTLYIMMTLSTFMMLIFSSSKTIKDLTTSWTIS---------PTTTALMFMLLMSMAGLPPLTGFMPKWLILQD 269
Cdd:TIGR01972 316 NELGISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAkygglankmPVLAAFFMLFAMASLGLPGTSGFVGEFLILLG 395

                         250
                  ....*....|.
gi 565983493  270 LTSHNLPMMAI 280
Cdd:TIGR01972 396 SFKVNPVVAFL 406
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 165-279 2.75e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 39.52  E-value: 2.75e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493 165 GGWGGLNQTQARKIMAYSSIAHLGWMASILTL-SPNLMLLNLTLYI---MMTLSTFMM--LIFSSSKT--IKDLTTSWTI 236
Cdd:PRK12644 281 GGWRALRQHDLKLILAYGTVSQLGFLTVLVGIgTRDAALAGLAMLLahaLFKAALFLVvgIIDHSTGTrdIRKLSGLGRR 360

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 565983493 237 SPTTTALMFMLLMSMAGLPPLTGFMPKWLILQDLTSHNLPMMA 279
Cdd:PRK12644 361 QPVLAVVAALAAASMAGLPPLLGFVAKEAALEAVLHDGALGPA 403
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 92-299 3.70e-03

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 39.19  E-value: 3.70e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493   92 PYACIMLTMALSMKLGLAPLHFWLPEVLQGSSLKTALI-----ITTWQKL-APMTLLYlTHHSLHTTTLLTMGLLSTLIG 165
Cdd:TIGR01974 213 TLICLLLFIGAMGKSAQLPLHTWLPDAMEGPTPVSALIhaatmVTAGVYLvARTSPLF-ELSPTALYLVTIIGAITALFA 291

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493  166 GWGGLNQTQARKIMAYSSIAHLGWMASILTLSPnlmlLNLTLYIMMTLSTFMMLIFSSS----------KTIKDLTTSWT 235
Cdd:TIGR01974 292 ATVALVQNDIKRILAYSTMSQLGYMFLALGVGA----YAAAIFHLMTHAFFKALLFLGAgsvihamhheQDIRKMGGLRK 367

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 565983493  236 ISPTTTALMFMLLMSMAGLPPLTGFMPKWLILQD-LTSHNLPMMAIFMAMSALLSLFFYLRLTYM 299
Cdd:TIGR01974 368 KMPVTYITFLIGSLALIGFPGFAGFFSKDLILEAaFASGTHSFLFVAGLIGAFLTAFYSFRLIFM 432
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 176-298 4.52e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 38.86  E-value: 4.52e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493 176 RKIMAYSSIAHLGWMASILTL-SPNLMLLNLTLYIMMTLSTF-----MMLIFSSSKTIKDLTTSWTISPTTTALMFMLLM 249
Cdd:MTH00209 264 KKIIALSTLSQLGLMMCSLGLnQPELAFFHLITHALFKALLFicagnIIHSHGHSQDIRMVGNLWYQMPITSICLNIANL 343

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 565983493 250 SMAGLPPLTGFMPKWLILQDLTSHNLPMMAIFMAMSAL-LSLFFYLRLTY 298
Cdd:MTH00209 344 SLCGIPFLAGFYSKDLILESMLESNMPIMTLILMFLSTsLTAAYSMRLSY 393
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 165-296 7.26e-03

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 38.14  E-value: 7.26e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 565983493 165 GGWGGLNQTQARKIMAYSSIAHLGWM-ASILTLSPN------LMLLNLTLyimMTLSTFMM--LIFSSSKT--IKDLTTS 233
Cdd:COG1008  289 GALVALAQTDLKRLIAYSSVSHMGFVlLGIFALNPLglqgavLQMVSHGL---ITAALFLLvgVLYDRTHTrdIADLGGL 365

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 565983493 234 WTISPTTTALMFMLLMSMAGLPPLTGFMPKWLILQDLTSHNlPMMAIFMAMSALLSLFFYLRL 296
Cdd:COG1008  366 AKRMPVLAALFLLAALASLGLPGTSGFVGEFLVLLGAFQVN-PWLAILAALGLILTAAYLLWM 427
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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