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Conserved domains on  [gi|578896241|gb|AHI17162|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Otus megalotis]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-338 2.63e-135

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 388.41  E-value: 2.63e-135
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241   1 TSLSLLLGTTITLSSNHWVMAWTGLEINTLAIIPMISKSHHPRAFKA**K*FLVQATASIMLLFSSTTNAWSSGQWDITQ 80
Cdd:MTH00112   9 ITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQ 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241  81 VTHPTSCLILTTAIAIKLGLVPFHFWFPEVLQGTTLTTALLLSTLMKLPPLTLLLLTSHSLNPTLLTTMAILSTALGGWM 160
Cdd:MTH00112  89 LTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWG 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241 161 GLNQTQTRKILAFSSISHLGWMIAIILYSPKLTLLTFCLYTTMTSSVFMTLNTTKTMSLPTMMVSWTKAPVLNTTLMLTL 240
Cdd:MTH00112 169 GLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTL 248

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241 241 LSLAGLPPLTGFLPKWFILQELTNQELTPEATMLAMLSLLSLFFYLRLAYYSTITLPPNSSTHMKQWHTCNPPNTTIAIL 320
Cdd:MTH00112 249 LSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTLTATL 328

                        330
                 ....*....|....*...
gi 578896241 321 TSMSISLLPLSPMILASM 338
Cdd:MTH00112 329 TTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-338 2.63e-135

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 388.41  E-value: 2.63e-135
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241   1 TSLSLLLGTTITLSSNHWVMAWTGLEINTLAIIPMISKSHHPRAFKA**K*FLVQATASIMLLFSSTTNAWSSGQWDITQ 80
Cdd:MTH00112   9 ITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQ 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241  81 VTHPTSCLILTTAIAIKLGLVPFHFWFPEVLQGTTLTTALLLSTLMKLPPLTLLLLTSHSLNPTLLTTMAILSTALGGWM 160
Cdd:MTH00112  89 LTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWG 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241 161 GLNQTQTRKILAFSSISHLGWMIAIILYSPKLTLLTFCLYTTMTSSVFMTLNTTKTMSLPTMMVSWTKAPVLNTTLMLTL 240
Cdd:MTH00112 169 GLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTL 248

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241 241 LSLAGLPPLTGFLPKWFILQELTNQELTPEATMLAMLSLLSLFFYLRLAYYSTITLPPNSSTHMKQWHTCNPPNTTIAIL 320
Cdd:MTH00112 249 LSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTLTATL 328

                        330
                 ....*....|....*...
gi 578896241 321 TSMSISLLPLSPMILASM 338
Cdd:MTH00112 329 TTLSTLLLPLSPMILTII 346
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 15-260 1.74e-16

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 78.51  E-value: 1.74e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241   15 SNHWVMAWTGLEINTLAIIPMI-SKSHHPRAFKA**K*FLVQATASIMLLFSSTTNAWSSGQWDITQ--------VTHPT 85
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDElskaltggLNSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241   86 SCLI---LTTAIAIKLGLVPFHFWFPEVLQGTTLTTALLLSTLMKLPPLTLLLLTSHSLNPT------LLTTMAILSTAL 156
Cdd:pfam00361  81 LLLLfllILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSspfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241  157 GGWMGLNQTQTRKILAFSSISHLGWMIAIIL----YSPKLTLLTFCLYTTMTSSVF-----MTLNTTKTMSLPTMMVSWT 227
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFlcagsVIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 578896241  228 KAPVLNTTLMLTLLSLAGLPPLTGFLPKWFILQ 260
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 6-268 6.98e-12

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 65.91  E-value: 6.98e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241   6 LLGTTITLSSNHWVMAWTGLEINTLAIIPMIS-KSHHPRAFKA**K*FLVQATASIMLLF--------SSTTN----AWS 72
Cdd:COG1007  112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisllygaTGSLNlagiAAA 191

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241  73 SGQWDITQVTHPTSCLILTTAIAIKLGLVPFHFWFPEVLQGTTLTTALLLSTLMKLPP-------LTLLLLTSHSLNPTL 145
Cdd:COG1007  192 LAAGGANSPLLLLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAfaallrlLVEAFPGLAADWQLL 271

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241 146 LTTMAILSTALGGWMGLNQTQTRKILAFSSISHLGWM-IAIILYSP---KLTLLTFCLYTTMTSSVFMTLNTTKTMSLPT 221
Cdd:COG1007  272 LAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLlLGLAAGTPlgvSAALFYLLAYLFMNLGAFAVILLLSRKGGEA 351

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 578896241 222 MMVS-----WTKAPVLNTTLMLTLLSLAGLPPLTGFLPKWFILQELTNQELT 268
Cdd:COG1007  352 EEIEdlaglARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLY 403
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 6-267 8.77e-11

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 62.66  E-value: 8.77e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241    6 LLGTTITLSSNHWVMAWTGLEINTLAI-IPMISKSHHPRAFKA**K*FLVQATASIMLLFSSTTNAWSSGQWDITQVTHP 84
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241   85 TSCLILT------------TAIAIKLGLVPFHFWFPEVLQGTTLTTALLLSTLMKLPP-------LTLLLLTSHSLNPTL 145
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIfavflrlFLYILFGFSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241  146 LTTMAILSTALGGWMGLNQTQTRKILAFSSISHLGWmIAIILYSPKLTLLTFCL-----YTTMTSSVFMTL------NTT 214
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGY-ILIGLLAGTLEGIKAVLfyifiYALMSLGAFGVLsllrsyKDE 350

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 578896241  215 KTMSLPTMMVSWTKAPVLNTTLMLTLLSLAGLPPLTGFLPKWFILQELTNQEL 267
Cdd:TIGR01770 351 WIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGL 403
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-338 2.63e-135

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 388.41  E-value: 2.63e-135
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241   1 TSLSLLLGTTITLSSNHWVMAWTGLEINTLAIIPMISKSHHPRAFKA**K*FLVQATASIMLLFSSTTNAWSSGQWDITQ 80
Cdd:MTH00112   9 ITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQ 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241  81 VTHPTSCLILTTAIAIKLGLVPFHFWFPEVLQGTTLTTALLLSTLMKLPPLTLLLLTSHSLNPTLLTTMAILSTALGGWM 160
Cdd:MTH00112  89 LTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWG 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241 161 GLNQTQTRKILAFSSISHLGWMIAIILYSPKLTLLTFCLYTTMTSSVFMTLNTTKTMSLPTMMVSWTKAPVLNTTLMLTL 240
Cdd:MTH00112 169 GLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTL 248

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241 241 LSLAGLPPLTGFLPKWFILQELTNQELTPEATMLAMLSLLSLFFYLRLAYYSTITLPPNSSTHMKQWHTCNPPNTTIAIL 320
Cdd:MTH00112 249 LSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTLTATL 328

                        330
                 ....*....|....*...
gi 578896241 321 TSMSISLLPLSPMILASM 338
Cdd:MTH00112 329 TTLSTLLLPLSPMILTII 346
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 3-336 5.99e-112

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 329.07  E-value: 5.99e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241   3 LSLLLGTTITLSSNHWVMAWTGLEINTLAIIPMISKSHHPRAFKA**K*FLVQATASIMLLFSSTTNAWSSGQWDITQVT 82
Cdd:MTH00135  11 FSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGQWDIQQMS 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241  83 HPTSCLILTTAIAIKLGLVPFHFWFPEVLQGTTLTTALLLSTLMKLPPLTLLLLTSHSlNPTLLTTMAILSTALGGWMGL 162
Cdd:MTH00135  91 HPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLTSTLVGGWGGL 169

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241 163 NQTQTRKILAFSSISHLGWMIAIILYSPKLTLLTFCLYTTMTSSVFMTLNTTKTMSLPTMMVSWTKAPVLNTTLMLTLLS 242
Cdd:MTH00135 170 NQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPLILLS 249

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241 243 LAGLPPLTGFLPKWFILQELTNQELTPEATMLAMLSLLSLFFYLRLAYYSTITLPPNSSTHMKQWHTCNPPNTT-IAILT 321
Cdd:MTH00135 250 LGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPSTQLTLpLAIST 329

                        330
                 ....*....|....*
gi 578896241 322 SMSISLLPLSPMILA 336
Cdd:MTH00135 330 TATLMLLPLTPAILA 344
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 4-338 2.16e-105

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 312.24  E-value: 2.16e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241   4 SLLLGTTITLSSNHWVMAWTGLEINTLAIIPMISKSHHPRAFKA**K*FLVQATASIMLLFSSTTNAWSSGQWDITQVTH 83
Cdd:MTH00070  12 SLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTGEWTIMNMQT 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241  84 PTSCLILTTAIAIKLGLVPFHFWFPEVLQGTTLTTALLLSTLMKLPPLTLLLLTSHSLNPTLLTTMAILSTALGGWMGLN 163
Cdd:MTH00070  92 PLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLLSTLIGGWGGLN 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241 164 QTQTRKILAFSSISHLGWMIAIILYSPKLTLLTFCLYTTMTSSVFMTLNTTKTMSLPTMMVSWTKAPVLNTTLMLTLLSL 243
Cdd:MTH00070 172 QTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLTLLSL 251

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241 244 AGLPPLTGFLPKWFILQELTNQELTPEATMLAMLSLLSLFFYLRLAYYSTITLPPNSSTHMKQWHTCNPPNTTIAILTSM 323
Cdd:MTH00070 252 GGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNKTNNLLSLTIIL 331

                        330
                 ....*....|....*
gi 578896241 324 SISLLPLSPMILASM 338
Cdd:MTH00070 332 SLMLLPITPTILNLF 346
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 2-335 3.19e-94

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 283.66  E-value: 3.19e-94
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241   2 SLSLLLGTTITLSSNHWVMAWTGLEINTLAIIPMISKSHHPRAFKA**K*FLVQATASIMLLFSSTTNAWSSGQWDITQV 81
Cdd:MTH00105  10 YLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYSGQWTITKL 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241  82 THPTSCLILTTAIAIKLGLVPFHFWFPEVLQGTTLTTALLLSTLMKLPPLTLLLLTSHSLNPTLLTTMAILSTALGGWMG 161
Cdd:MTH00105  90 TNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAILSILIGGWGG 169

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241 162 LNQTQTRKILAFSSISHLGWMIAIILYSPKLTLLTFCLYTTMTSSVFMTLNTTKTMSLPTMMVSWTKAPVLNTTLMLTLL 241
Cdd:MTH00105 170 LNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLILLTLL 249

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241 242 SLAGLPPLTGFLPKWFILQELTNQELTPEATMLAMLSLLSLFFYLRLAYYSTITL-PPNSSTHMKQWHTCNPPNTTIAIL 320
Cdd:MTH00105 250 SLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMfPSTNNMKMKWQFENTKPMTLLPTL 329

                        330
                 ....*....|....*
gi 578896241 321 TSMSISLLPLSPMIL 335
Cdd:MTH00105 330 IILSTMLLPLTPMLS 344
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 2-338 2.59e-83

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 256.05  E-value: 2.59e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241   2 SLSLLLGTTITLSSNHWVMAWTGLEINTLAIIPMISKSHHPRAFKA**K*FLVQATASIMLLFSSTTNAWSSGQWDITQV 81
Cdd:MTH00200  10 ILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQWGISEM 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241  82 THPTSCLILTTAIAIKLGLVPFHFWFPEVLQGTTLTTALLLSTLMKLPPLTLLLLTSHSLNPTLLTTMAILSTALGGWMG 161
Cdd:MTH00200  90 LGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLLSVLVGGWGG 169

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241 162 LNQTQTRKILAFSSISHLGWMIAIILYSPKLTLLTFCLYTTMTSSVFMTLNTTKTMSLPTMMVSWTKAPVLNTTLMLTLL 241
Cdd:MTH00200 170 LNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGLTLL 249

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241 242 SLAGLPPLTGFLPKWFILQELTNQELTPEATMLAMLSLLSLFFYLRLAYYSTITLPPNSSTHMKQWHTCNPPNTTIAILT 321
Cdd:MTH00200 250 SLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSNSNLLVGLLL 329

                        330
                 ....*....|....*..
gi 578896241 322 SMSISLLPLSPMILASM 338
Cdd:MTH00200 330 LLSILGLPLTPQLLFLF 346
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 3-328 5.16e-66

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 211.71  E-value: 5.16e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241   3 LSLLLGTTITLSSNHWVMAWTGLEINTLAIIPMISKSHHPRAFKA**K*FLVQATASIMLLFSSTTNAWSSGQWDITQVT 82
Cdd:MTH00041  11 TSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGPL 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241  83 HPTSCLILTTAIAIKLGLVPFHFWFPEVLQGTTLTTALLLSTLMKLPPLTLLLLTSHSLNPTLLTTMAILSTALGGWMGL 162
Cdd:MTH00041  91 NTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGGWGGL 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241 163 NQTQTRKILAFSSISHLGWMIAIILYSPKLTLLTFCLYTTMTSSVFMTLNTTKTMSLPTMMVSWTKAPVLNTTLMLTLLS 242
Cdd:MTH00041 171 NQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSILS 250

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241 243 LAGLPPLTGFLPKWFILQELTNQELTPEATMLAMLSLLSLFFYLRLAYYSTITLPPNSSTHMKQWHTCNPPNTTIAILTS 322
Cdd:MTH00041 251 LGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGNITVYGVILSI 330


                 ....*.
gi 578896241 323 MSISLL 328
Cdd:MTH00041 331 LSSISI 336
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 5-335 2.78e-43

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 151.90  E-value: 2.78e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241   5 LLLGTTITLSSNHWVMAWTGLEINTLAIIPMISKSHHPRAFKA**K*FLVQATASIMLLFSSTTNAWSSGqwditqVTHP 84
Cdd:MTH00160  14 LIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLNLM------LFNN 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241  85 TSCLILTTAIAIKLGLVPFHFWFPEVLQGTTLTTALLLSTLMKLPPLTLLLLTShslNPTLLTTMAILSTALGGWMGLNQ 164
Cdd:MTH00160  88 ISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLI---NNNFIIIIIILSAIIGAIGGLNQ 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241 165 TQTRKILAFSSISHLGWMIAIILYSPKLTLLTFCLYTTMTSSVFMTLNTTKTMSLPTMMVSWTKAPVLNTTLMLTLLSLA 244
Cdd:MTH00160 165 TSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFLNLLSLG 244

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241 245 GLPPLTGFLPKWFILQELTNQELTPEATMLAMLSLLSLFFYLRLAyYSTITLPPNSSTHMKQWHTcNPPNTTIAILTSMS 324
Cdd:MTH00160 245 GLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRIS-YSSLMLNYNKNKWNLKKKK-NKFSLILNFLSFIS 322

                        330
                 ....*....|.
gi 578896241 325 ISLLPLSPMIL 335
Cdd:MTH00160 323 LFGLILSSLLF 333
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 5-264 1.50e-36

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 134.24  E-value: 1.50e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241   5 LLLGTTITLSSNHWVMAWTGLEINTLAIIPMISKSHHPRAFKA**K*FLVQATASIMLLFSSTTNAWSSGQWDITqvthp 84
Cdd:MTH00144  13 MVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFSM----- 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241  85 tscLILTTAIAIKLGLVPFHFWFPEVLQGTTLTTALLLSTLMKLPPLTLLLLTSHSLNP-TLLTTMAILSTALGGWMGLN 163
Cdd:MTH00144  88 ---SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSALVGSIGGLN 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241 164 QTQTRKILAFSSISHLGWMIAIILYSPKLTLLTFCLYTTMTSSVFMTLNTTKTMSLpTMMVSWTKAPVLNTTLMLTLLSL 243
Cdd:MTH00144 165 QTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSM-KDLGSLKPSYKTGLSIISLLLSL 243

                        250       260
                 ....*....|....*....|.
gi 578896241 244 AGLPPLTGFLPKWFILQELTN 264
Cdd:MTH00144 244 GGLPPFLGFCSKLLVLISSME 264
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 4-267 1.48e-35

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 131.44  E-value: 1.48e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241   4 SLLLGTTITLSSNHWVMAWTGLEINTLAIIPMISKSHHPRAFKA**K*FLVQATASIMLLFSSTTNAWSSGQWDITQVth 83
Cdd:MTH00011  14 TMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMMWSFPSLLKNITA-- 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241  84 ptscLILTTAIAIKLGLVPFHFWFPEVLQGTTLTTALLLSTLMKLPPLTLLLLTSHSLNPTLLTTMAILSTALGGWMGLN 163
Cdd:MTH00011  92 ----LMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLGGMN 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241 164 QTQTRKILAFSSISHLGWMIAIILYSPKLTLLTFCLYTTMTSSVFMTLNTTKTMSLPTMMVSWTKAPVLNTTLMLTLLSL 243
Cdd:MTH00011 168 QTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSL 247

                        250       260
                 ....*....|....*....|....
gi 578896241 244 AGLPPLTGFLPKWFILQELTNQEL 267
Cdd:MTH00011 248 GGLPPFTGFMPKLMAIETLTSNSM 271
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 2-262 9.04e-30

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 115.93  E-value: 9.04e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241   2 SLSLLLGTTITLSSNHWVMAWTGLEINTLAIIPMISKSHHPRAFKA**K*FLVQATASIMLLFSSttnawSSGQWDITQV 81
Cdd:MTH00197   4 LFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGG-----SLSFSNLYLS 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241  82 ThpTSCLILTTAIAIKLGLVPFHFWFPEVLQGTTLTTALLLSTLMKLPPLTLLLLTSHslNPTLLTTMAILSTALGGWMG 161
Cdd:MTH00197  79 L--LSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSS--SFMGLLICSVLSSLIGGIGG 154

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241 162 LNQTQTRKILAFSSISHLGWMIAIILYSPKLTLLTFCLYTTMTSSVFMTLNTTKTMSLPTMMVSWTKAPVLNTTLMLTLL 241
Cdd:MTH00197 155 MNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFL 234

                        250       260
                 ....*....|....*....|.
gi 578896241 242 SLAGLPPLTGFLPKWFILQEL 262
Cdd:MTH00197 235 SLGGLPPLSGFFLKWLILTSL 255
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 5-266 7.55e-17

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 80.46  E-value: 7.55e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241   5 LLLGTTITLSSNHWVMAWTGLEINTLAIIPMI-SKSHHPRAFKA**K*FLVQATASIMLLFSSTTNAWSSGQWDI----- 78
Cdd:MTH00196   2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGCALLCGTTGGLHLsyinl 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241  79 --------TQVTHPTSCLILTTAIAIKLGLVPFHFWFPEVLQGTTLTTALLLSTLMKLPPLTLLLLTSHSLNptLLTTMA 150
Cdd:MTH00196  82 vlnsgqsfSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVN--ILLIGG 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241 151 ILSTALGGWMGLNQTQTRKILAFSSISHLG---WMIAI-ILYSPKLTLLTFCLYTTMTSSVFM---TLNTTKTMSLPTMM 223
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGfvlWGIEIgSFESIQASLVYLFIYIIMSICVFSiilALNVYKNLIIEFSG 239

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 578896241 224 VSwTKAPVLNTTLMLTLLSLAGLPPLTGFLPKWFILQELTNQE 266
Cdd:MTH00196 240 LS-RRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQ 281
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 15-260 1.74e-16

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 78.51  E-value: 1.74e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241   15 SNHWVMAWTGLEINTLAIIPMI-SKSHHPRAFKA**K*FLVQATASIMLLFSSTTNAWSSGQWDITQ--------VTHPT 85
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDElskaltggLNSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241   86 SCLI---LTTAIAIKLGLVPFHFWFPEVLQGTTLTTALLLSTLMKLPPLTLLLLTSHSLNPT------LLTTMAILSTAL 156
Cdd:pfam00361  81 LLLLfllILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSspfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241  157 GGWMGLNQTQTRKILAFSSISHLGWMIAIIL----YSPKLTLLTFCLYTTMTSSVF-----MTLNTTKTMSLPTMMVSWT 227
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFlcagsVIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 578896241  228 KAPVLNTTLMLTLLSLAGLPPLTGFLPKWFILQ 260
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 3-259 2.28e-14

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 73.51  E-value: 2.28e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241   3 LSLLLGTTITLSSNHWVMAWTGLEINTLAIIPMIS-KSHHPRAFKA**K*FLVQATASIMLLFSSTTNAWSSGQWDITQV 81
Cdd:MTH00199 104 LIVALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIQGI 183

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241  82 THPTSC----LILTTAIAIKLGLVPFHFWFPEVLQGTTLTTALLLSTLMKLPPLTLLLLTSHSLNPTLLTtmAILSTALG 157
Cdd:MTH00199 184 NSILTGdvgkILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSIIYG 261

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241 158 GWMGLNQTQTRKILAFSSISHLGWMIAIILY----SPKLTLLTFCLYTTMTSSVF---MTLNTTKTMSLPTMMVSwTKAP 230
Cdd:MTH00199 262 AIGALNQTKIKRLLAYSGIGHMGFILFGVAIgsfeSIQASLIYMIIYVIMSICSFsiiLSLKLTKGLIVEVSGLS-RKNP 340

                        250       260
                 ....*....|....*....|....*....
gi 578896241 231 VLNTTLMLTLLSLAGLPPLTGFLPKWFIL 259
Cdd:MTH00199 341 VIALTLALTFLSIAGIPPLAGFLSKWLIL 369
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 6-268 6.98e-12

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 65.91  E-value: 6.98e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241   6 LLGTTITLSSNHWVMAWTGLEINTLAIIPMIS-KSHHPRAFKA**K*FLVQATASIMLLF--------SSTTN----AWS 72
Cdd:COG1007  112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisllygaTGSLNlagiAAA 191

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241  73 SGQWDITQVTHPTSCLILTTAIAIKLGLVPFHFWFPEVLQGTTLTTALLLSTLMKLPP-------LTLLLLTSHSLNPTL 145
Cdd:COG1007  192 LAAGGANSPLLLLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAfaallrlLVEAFPGLAADWQLL 271

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241 146 LTTMAILSTALGGWMGLNQTQTRKILAFSSISHLGWM-IAIILYSP---KLTLLTFCLYTTMTSSVFMTLNTTKTMSLPT 221
Cdd:COG1007  272 LAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLlLGLAAGTPlgvSAALFYLLAYLFMNLGAFAVILLLSRKGGEA 351

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 578896241 222 MMVS-----WTKAPVLNTTLMLTLLSLAGLPPLTGFLPKWFILQELTNQELT 268
Cdd:COG1007  352 EEIEdlaglARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLY 403
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
6-269 9.83e-12

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 65.61  E-value: 9.83e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241   6 LLGTTITLSSNHWVMAWTGLEINTLAIIPMIS-KSHHPRAFKA**K*FLVQATASIMLLF--------SSTTN----AWS 72
Cdd:PRK05777 113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYgmsllygaTGSLSfagiAKA 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241  73 SGQWDITQVTHPTSCLILTTAIAIKLGLVPFHFWFPEVLQGTTLTTALLLSTLMKLPP-------LTLLLLTSHSLNPTL 145
Cdd:PRK05777 193 LADGSGNSLLLLFGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAfavllrlLVVAFGGLSEDWQQV 272

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241 146 LTTMAILSTALGGWMGLNQTQTRKILAFSSISHLGWMIAIILYSPKLTLLTFCLYttMTSSVFMTLNTTKTMSL------ 219
Cdd:PRK05777 273 LAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYSAVLFY--LLAYLFMTLGAFGVISLlrrkgg 350

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 578896241 220 -PTMMVSWT----KAPVLNTTLMLTLLSLAGLPPLTGFLPKWFILQELTNQELTP 269
Cdd:PRK05777 351 eAESISDFAglskRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWW 405
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 6-267 8.77e-11

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 62.66  E-value: 8.77e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241    6 LLGTTITLSSNHWVMAWTGLEINTLAI-IPMISKSHHPRAFKA**K*FLVQATASIMLLFSSTTNAWSSGQWDITQVTHP 84
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241   85 TSCLILT------------TAIAIKLGLVPFHFWFPEVLQGTTLTTALLLSTLMKLPP-------LTLLLLTSHSLNPTL 145
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIfavflrlFLYILFGFSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241  146 LTTMAILSTALGGWMGLNQTQTRKILAFSSISHLGWmIAIILYSPKLTLLTFCL-----YTTMTSSVFMTL------NTT 214
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGY-ILIGLLAGTLEGIKAVLfyifiYALMSLGAFGVLsllrsyKDE 350

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 578896241  215 KTMSLPTMMVSWTKAPVLNTTLMLTLLSLAGLPPLTGFLPKWFILQELTNQEL 267
Cdd:TIGR01770 351 WIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGL 403
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 5-260 3.84e-10

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 60.55  E-value: 3.84e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241   5 LLLGTTITLSSNHWVMAWTGLEINTLAIIPMISKSHHPRAFKA**K*FLVQATASIMLLFSSTTNAWSSGQWDITQVTH- 83
Cdd:COG0651  116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAAr 195

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241  84 ---------PTSCLILTTAIAIKLGLVPFHFWFPE-----------VLQGTTLTTALLLStlMKLPPLTLLLLTSHSLNP 143
Cdd:COG0651  196 laeldpgllLAAFALLLVGFGIKAALFPLHFWLPDaypaapspvsaLLSGLLTKVGVYAI--LRVLTLLFGADPALFLGT 273

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241 144 TLLTtMAILSTALGGWMGLNQTQTRKILAFSSISHLGWM-IAIILYSPklTLLTFCLYTTMTSSVFMTL---------NT 213
Cdd:COG0651  274 LLLV-LGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYIlLGLGLGTP--LGLAGALFHLLNHALAKALlflaagaieRA 350

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*..
gi 578896241 214 TKTMSLPTMMVSWTKAPVLNTTLMLTLLSLAGLPPLTGFLPKWFILQ 260
Cdd:COG0651  351 TGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQ 397
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 7-259 6.13e-10

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 60.26  E-value: 6.13e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241   7 LGTTITLSSNHWVMAWTGLEINTLAIIPMISKSHHPRAFKA**---------K*FLVQATAS------IMLLFSSTTNAW 71
Cdd:MTH00198 199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHFPSPgntppesglKYWILGAMSSgfylfgCALYFGFTGNEG 278

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241  72 SSGQwdITQVTHPTS----------CLILTTAIAIKLGLVPFHFWFPEVLQGTTLTTALLLSTLMKLPPLTLLLLTSHSL 141
Cdd:MTH00198 279 MLGT--ILSATLETTnielrqgslgYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSLVITS 356

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241 142 NptLLTTMAILSTALGGWMGLNQTQTRKILAFSSISHLGWMIAII-------LYSPKLTLLTFCLYTTMTSSVFMTLNTT 214
Cdd:MTH00198 357 K--LLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVsagtyesLQASWTYAVTYLVSALASFTVICTLEEF 434

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 578896241 215 KTMS------------------LPTMMVSWTKAPVLNTTLMLTLLSLAGLPPLTGFLPKWFIL 259
Cdd:MTH00198 435 GTRTptsrqrdgsfgnynlvrrLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFIL 497
ndhB CHL00049
NADH dehydrogenase subunit 2
 79-255 1.09e-08

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 56.17  E-value: 1.09e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241  79 TQVTHPTSCLI----LTTAIAIKLGLVPFHFWFPEVLQGTTLTTALLLSTLMKLPPLTLLLLTSHSLNPT-------LLT 147
Cdd:CHL00049 205 TQMYNSPGISIalifITVGIGFKLSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAASALATRIFDIPFYFssnewhlLLE 284

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241 148 TMAILSTALGGWMGLNQTQTRKILAFSSISHLGW-MIAIILYSPKLTLLTFCLYttMTSSVFMTLNT----------TKT 216
Cdd:CHL00049 285 ILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYvIIGIIVGDSNDGYASMITY--MLFYIFMNLGTfacivlfglrTGT 362

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 578896241 217 MSLPTMMVSWTKAPVLNTTLMLTLLSLAGLPPLTGFLPK 255
Cdd:CHL00049 363 DNIRDYAGLYTKDPFLALSLALCLLSLGGIPPLAGFFGK 401
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
42-186 7.95e-05

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 44.27  E-value: 7.95e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241  42 PRAFKA**K*FLVQATASIMLLF-SSTTNAWSSGQWDITQ-----VTHPTSCLILT-----TAIAIKLGLVPFHFWFPEV 110
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGSTQLSAialalITSPSLGLALAlvfviAGIAFKISAVPFHQWTPDV 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241 111 LQGTTLTTALLLSTLMKLPPLTLLLLTSHSLNP-------TLLTTMAILSTALGGWMGLNQTQTRKILAFSSISHLGW-M 182
Cdd:PRK02504 237 YEGSPTPVVAFLSVGSKAAGFALAIRLLVTAFPsfdeqwkLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFvM 316


                 ....
gi 578896241 183 IAII 186
Cdd:PRK02504 317 IGLV 320
PRK12650 PRK12650
DUF4040 family protein;
145-255 1.04e-04

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 44.26  E-value: 1.04e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241 145 LLTTMAILSTALGGWMGLNQTQTRKILAFSSISHLGWMIAIILYSPKLTLLTFCLYTT----MTSSVFMTL----NTTKT 216
Cdd:PRK12650 274 LLIIVGMITALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTLahalFKSSLFMLIgvvdHQAGT 353

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 578896241 217 MSLPTMMVSWTKAPVLNTTLMLTLLSLAGLPPLTGFLPK 255
Cdd:PRK12650 354 RDIRRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGFVSK 392
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 287-332 5.32e-04

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 37.24  E-value: 5.32e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 578896241  287 RLAYYSTITLPPNSSTHMKQWHTCNP-PNTTIAILTSMSISLLPLSP 332
Cdd:pfam06444   5 RLSYSTTLTLFPNTNNSKMKWRFNSTkNTLLLPTLTTLSILLLPLTP 51
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 143-255 1.41e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 40.68  E-value: 1.41e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241 143 PTLLTtMAILSTALGGWMGLNQTQTRKILAFSSISHLGWMIAIILYSPK------LTLLtfCLYTTMTSSVFMTL----N 212
Cdd:PRK12644 268 PTVLV-LGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRdaalagLAML--LAHALFKAALFLVVgiidH 344

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 578896241 213 TTKTMSLPTMMVSWTKAPVLNTTLMLTLLSLAGLPPLTGFLPK 255
Cdd:PRK12644 345 STGTRDIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAK 387
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 25-258 1.56e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 40.08  E-value: 1.56e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241  25 LEINTLAIIPMIS-KSHHPRAFKA**K*FLVQATASIMLLFSSttnAWSSGQWDI-------------TQVTHPTSCLIL 90
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGI---ALLYGQYGTlnmaylavkmsenPTVVAKIALALF 226

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241  91 TTAIAIKLGLVPFHFW----FPEVLQGTTLTTALLLSTLMKLPPLTLLLLTSHSLNPT----LLTTMAILSTALGGWMGL 162
Cdd:PRK08376 227 IAGLAMKSGAVPVHMWlpdaYPAAPSSISAMLLVIKQAGLYALARVLFSIYGPAINLAtvgwVIIILGCLTMFVGVAMAV 306

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241 163 NQTQTRKILAFSSISHLGWM-----IAIILY-SPKLTLLTFclyTTMTSSVFMTLN-----------------TTKTMSL 219
Cdd:PRK08376 307 VQKDVKRLLAYHSVSQIGYMllglgVGLAALgDPAMASYGE---IALAGGIYHIVNhalykallfltagaviyETGTRNL 383

                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 578896241 220 PTMMVSWTKAPVLNTTLMLTLLSLAGLPPLTGFLPKWFI 258
Cdd:PRK08376 384 NELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 144-262 3.42e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 39.09  E-value: 3.42e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241 144 TLLTTMAILSTALGGWMGLNQTQTRKILAFSSISHLGWMIAIILYSPKLTLLTFCLYT----TMTSSVFM-------TLN 212
Cdd:PRK08375 272 WLLAVLALLSMLVGSLAALGQDDVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLlhhaLMKGALFLaagaievTYG 351

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 578896241 213 TTKTMSLPTMMvswTKAPVLNTTLMLTLLSLAGLPPLTGFLPKWFILQEL 262
Cdd:PRK08375 352 TRRLSELSGLG---RRMPLTAAAFAVASLSLIGVPPTSGFVSKWYLVVGA 398
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 144-259 3.99e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 38.95  E-value: 3.99e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241 144 TLLTTMAILSTALGGWMGLNQTQTRKILAFSSISHLGWMIAIILYSPKLTLLTFCLY----TTMTSSVFMT-------LN 212
Cdd:PRK12662 280 NVFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFMVsgsisyhFG 359

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 578896241 213 TTKTMSLPTMmvsWTKAPVLNTTLMLTLLSLAGLPPLTGFLPKWFIL 259
Cdd:PRK12662 360 TTKLEDCLNL---WKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 143-184 4.60e-03

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 38.59  E-value: 4.60e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 578896241 143 PTLLTTMAI--LSTAL-GGWMGLNQTQTRKILAFSSISHLGWMIA 184
Cdd:COG1009  272 PVWLTVVAIigAITALfAALIALAQTDIKRVLAYSTVSQLGYMFL 316
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
144-260 5.56e-03

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 38.39  E-value: 5.56e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241 144 TLLTTMAILsTALGGWMG-LNQTQTRKILAFSSISHLGWMIA------------IILYSPKLTLLTFCLYTTMTSSVFMT 210
Cdd:PRK12663 273 PLLATMAAI-TMVIGALGaLAYKDIRRIAGYQVISSIGFILLglalgtpagingAIFYLVHDMVVKTALFLIAGSLVRLT 351

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 578896241 211 lnttKTMSLPTMMVSWTKAPVLNTTLMLTLLSLAGLPPLTGFLPKWFILQ 260
Cdd:PRK12663 352 ----GYRSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQ 397
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 5-190 5.70e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 38.20  E-value: 5.70e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241   5 LLLGTTITLSSNHWVMAWTGLEINTLAIIPMISKSHHPRAFKA**K*FLVQATASI------MLLFSSTTNAWSSG--QW 76
Cdd:PRK08676 111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAMIfafiglIFLFSLTRQALGTGtlNW 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578896241  77 DITQVTHP--------TSCLILTTAIAIKLGLVPFHFWFPEVLQGTTLTTALLLSTLMKLPPLTLLLLTSHSLNPT---- 144
Cdd:PRK08676 191 TELAAHASllspsvlgASFLFIFIGFLAKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLSALLRQSgaae 270

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 578896241 145 ----LLTTMAILSTALGGWMGLNQTQTRKILAFSSISHLGWM-IAIILYSP 190
Cdd:PRK08676 271 qfsnVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMlLGIGIGTP 321
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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