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Conserved domains on  [gi|629677330|gb|AHY86945|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Aethopyga nipalensis]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-342 6.79e-164

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 461.21  E-value: 6.79e-164
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330   1 MNPQAKLIFVISLITGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWY 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330  81 TGQWDITQLTHPTSCLILTSAISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPLTLLYMTSPSLNPAVLTTMAIL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330 161 SAAIGGWMGLNQTQIRKIMAFSSISHLGWMAIILAYDPKLTLLNFYLYSMMTAAVFLTLNTIKVLKLSTLMTAWTKTPSL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMALAATVIALLSLLSLFFYLRLAYCTTITLPPHTTNYMKQWHTSKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|..
gi 629677330 321 TNPTIAILMTLSITLLPIAPMI 342
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMI 342
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-342 6.79e-164

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 461.21  E-value: 6.79e-164
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330   1 MNPQAKLIFVISLITGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWY 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330  81 TGQWDITQLTHPTSCLILTSAISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPLTLLYMTSPSLNPAVLTTMAIL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330 161 SAAIGGWMGLNQTQIRKIMAFSSISHLGWMAIILAYDPKLTLLNFYLYSMMTAAVFLTLNTIKVLKLSTLMTAWTKTPSL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMALAATVIALLSLLSLFFYLRLAYCTTITLPPHTTNYMKQWHTSKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|..
gi 629677330 321 TNPTIAILMTLSITLLPIAPMI 342
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMI 342
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 2.43e-24

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 100.47  E-value: 2.43e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330   23 SNHWVMAWTGLEINTLAILPLI-SKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWYTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330   91 HPTSCLILTSAISMKLGLVPFHFWFPEVLQGSPLTTGLLL-STAMKLPPLTLLYMTSPSLNPA-----VLTTMAILSAAI 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIRRSLLYLPSSpfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330  165 GGWMGLNQTQIRKIMAFSSISHLGWMAIILA----YDPKLTLLNFYLYSMMTAAVFL-TLNTIKVLKLSTLMTA----WT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLcAGSVIYRRVHTRNIRDygglAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 629677330  236 KTPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-283 4.61e-24

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 102.50  E-value: 4.61e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330  14 ITGTTITISSNHWVMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLF-SSMTNAwYTGQWDITQLTH 91
Cdd:COG1007  112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGIAA 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330  92 PTS------------CLILTSAISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKL----PPLTLLYMTSPSLNPA--- 152
Cdd:COG1007  191 ALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAADwql 270

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330 153 VLTTMAILSAAIGGWMGLNQTQIRKIMAFSSISHLGWM--AIILAYDPKLTLLNFYL--YSMMTAAVFLTLNTIK----- 223
Cdd:COG1007  271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLllGLAAGTPLGVSAALFYLlaYLFMNLGAFAVILLLSrkgge 350

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 629677330 224 VLKLSTLMTAWTKTPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDM------ALAATVIA 283
Cdd:COG1007  351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLywlaviAVLNSVIS 416
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-282 8.40e-21

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 92.70  E-value: 8.40e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330   14 ITGTTITISSNHWVMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWYTGQWDITQLTHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330   93 TSCLILT------------SAISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLP---PLTLLYMTSPSLNPAVLTTM 157
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYILFGFSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330  158 ----AILSAAIGGWMGLNQTQIRKIMAFSSISHLGWMAIILAYDPKLTLLN--FYL--YSMMTAAVFLTLNTIKVLK--- 226
Cdd:TIGR01770 272 laiiAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLSLLRSYKdew 351

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 629677330  227 ---LSTLMTAWTKTPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMALAATVI 282
Cdd:TIGR01770 352 ieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIA 410
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-342 6.79e-164

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 461.21  E-value: 6.79e-164
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330   1 MNPQAKLIFVISLITGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWY 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330  81 TGQWDITQLTHPTSCLILTSAISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPLTLLYMTSPSLNPAVLTTMAIL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330 161 SAAIGGWMGLNQTQIRKIMAFSSISHLGWMAIILAYDPKLTLLNFYLYSMMTAAVFLTLNTIKVLKLSTLMTAWTKTPSL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMALAATVIALLSLLSLFFYLRLAYCTTITLPPHTTNYMKQWHTSKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|..
gi 629677330 321 TNPTIAILMTLSITLLPIAPMI 342
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMI 342
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-346 2.38e-134

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 386.08  E-value: 2.38e-134
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330   1 MNPQAKLIFVISLITGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWY 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330  81 TGQWDITQLTHPTSCLILTSAISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPLTLLYMTSPSlNPAVLTTMAIL 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330 161 SAAIGGWMGLNQTQIRKIMAFSSISHLGWMAIILAYDPKLTLLNFYLYSMMTAAVFLTLNTIKVLKLSTLMTAWTKTPSL 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMALAATVIALLSLLSLFFYLRLAYCTTITLPPHTTNYMKQW--HTS 318
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWrlPST 319

                        330       340
                 ....*....|....*....|....*...
gi 629677330 319 KPTNPtIAILMTLSITLLPIAPMIRILF 346
Cdd:MTH00135 320 QLTLP-LAISTTATLMLLPLTPAILALL 346
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-346 3.00e-134

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 385.81  E-value: 3.00e-134
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330   1 MNPQAKLIFVISLITGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWY 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330  81 TGQWDITQLTHPTSCLILTSAISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPLTLLYMTSPSLNPAVLTTMAIL 160
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330 161 SAAIGGWMGLNQTQIRKIMAFSSISHLGWMAIILAYDPKLTLLNFYLYSMMTAAVFLTLNTIKVLKLSTLMTAWTKTPSL 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMALAATVIALLSLLSLFFYLRLAYCTTITLPPHTTNYMKQWHTSKP 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320

                        330       340
                 ....*....|....*....|....*.
gi 629677330 321 TNPTIAILMTLSITLLPIAPMIRILF 346
Cdd:MTH00070 321 TNNLLSLTIILSLMLLPITPTILNLF 346
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-346 1.99e-115

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 337.97  E-value: 1.99e-115
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330   1 MNPQAKLIFVISLITGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWY 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330  81 TGQWDITQLTHPTSCLILTSAISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPLTLLYMTSPSLNPAVLTTMAIL 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330 161 SAAIGGWMGLNQTQIRKIMAFSSISHLGWMAIILAYDPKLTLLNFYLYSMMTAAVFLTLNTIKVLKLSTLMTAWTKTPSL 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMALAATVIALLSLLSLFFYLRLAYCTTITLPPHTTNYMKQWH-TSK 319
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQfENT 320

                        330       340
                 ....*....|....*....|....*..
gi 629677330 320 PTNPTIAILMTLSITLLPIAPMIRILF 346
Cdd:MTH00105 321 KPMTLLPTLIILSTMLLPLTPMLSILE 347
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-346 1.32e-97

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 292.64  E-value: 1.32e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330   1 MNPQAKLIFVISLITGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWY 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330  81 TGQWDITQLTHPTSCLILTSAISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPLTLLYMTSPSLNPAVLTTMAIL 160
Cdd:MTH00200  81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330 161 SAAIGGWMGLNQTQIRKIMAFSSISHLGWMAIILAYDPKLTLLNFYLYSMMTAAVFLTLNTIKVLKLSTLMTAWTKTPSL 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMALAATVIALLSLLSLFFYLRLAYCTTITLPPHTTNYMKQWHTSKP 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320

                        330       340
                 ....*....|....*....|....*.
gi 629677330 321 TNPTIAILMTLSITLLPIAPMIRILF 346
Cdd:MTH00200 321 SNLLVGLLLLLSILGLPLTPQLLFLF 346
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-341 2.06e-77

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 241.37  E-value: 2.06e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330   1 MNPQAKLIFVISLITGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWY 80
Cdd:MTH00041   1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330  81 TGQWDITQLTHPTSCLILTSAISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPLTLLYMTSPSLNPAVLTTMAIL 160
Cdd:MTH00041  81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330 161 SAAIGGWMGLNQTQIRKIMAFSSISHLGWMAIILAYDPKLTLLNFYLYSMMTAAVFLTLNTIKVLKLSTLMTAWTKTPSL 240
Cdd:MTH00041 161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMALAATVIALLSLLSLFFYLRLAYCTTITLPPHTTNYMKQWHTSKP 320
Cdd:MTH00041 241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGN 320

                        330       340
                 ....*....|....*....|..
gi 629677330 321 TNPTIAILMTLS-ITLLPIAPM 341
Cdd:MTH00041 321 ITVYGVILSILSsISILGLLLI 342
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-342 1.41e-54

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 181.95  E-value: 1.41e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330   1 MNPQAKLIFVISLITGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWy 80
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330  81 tgqwdITQLTHPTSCLILTSAISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPLTLLYMTspsLNPAVLTTMAIL 160
Cdd:MTH00160  81 -----NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIIL 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330 161 SAAIGGWMGLNQTQIRKIMAFSSISHLGWMAIILAYDPKLTLLNFYLYSMMTAAVFLTLNTIKVLKLSTLMTAWTKTPSL 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330 241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMALAATVIALLSLLSLFFYLRLAYCTTITLPPHTTNYMKQwhTSKP 320
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKK--KKNK 310

                        330       340
                 ....*....|....*....|..
gi 629677330 321 TNPTIAILMTLSITLLPIAPMI 342
Cdd:MTH00160 311 FSLILNFLSFISLFGLILSSLL 332
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 5-278 1.71e-45

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 158.13  E-value: 1.71e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330   5 AKLIFVISLITGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWYTGQW 84
Cdd:MTH00144   5 SNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330  85 DITqlthptscLILTSAISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPLTLLYMTSPSLNPA-VLTTMAILSAA 163
Cdd:MTH00144  85 FSM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAyLLCVISVLSAL 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330 164 IGGWMGLNQTQIRKIMAFSSISHLGWMAIILAYDPKLTLLNFYLYSMMTAAVFLTLNTiKVLKLSTLMTAWTKTPSLNAM 243
Cdd:MTH00144 157 VGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWS-GDSGSMKDLGSLKPSYKTGLS 235

                        250       260       270
                 ....*....|....*....|....*....|....*
gi 629677330 244 LLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMALA 278
Cdd:MTH00144 236 IISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLL 270
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 7-277 2.54e-44

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 154.94  E-value: 2.54e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330   7 LIFVISLITGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSmtnawyTGQWDI 86
Cdd:MTH00011   9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWSF 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330  87 TQLTHPTSCLILTSAISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPLTLLYMTSPSLNPAVLTTMAILSAAIGG 166
Cdd:MTH00011  83 PSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGG 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330 167 WMGLNQTQIRKIMAFSSISHLGWMAIILAYDPKLTLLNFYLYSMMTAAVFLTLNTIKVLKLSTLMTAWTKTPSLNAMLLL 246
Cdd:MTH00011 163 LGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFI 242

                        250       260       270
                 ....*....|....*....|....*....|.
gi 629677330 247 TLLSLAGLPPLTGFLPKWLIIQELTKQDMAL 277
Cdd:MTH00011 243 MLLSLGGLPPFTGFMPKLMAIETLTSNSMIL 273
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 8-342 6.11e-38

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 137.88  E-value: 6.11e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330   8 IFVISLITGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAwytgqwdIT 87
Cdd:MTH00197   2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSF-------SN 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330  88 QLTHPTSCLILTSAISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPLTLLymTSPSLNPAVLTTMAILSAAIGGW 167
Cdd:MTH00197  75 LYLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLIL--AFNSSSFMGLLICSVLSSLIGGI 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330 168 MGLNQTQIRKIMAFSSISHLGWMAIILAYDPKLTLLNFYLYSMMTAAVFLTLNTIKVLKLSTlMTAWTKTPSLNAMLLLT 247
Cdd:MTH00197 153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQ-QYSNPESMSSNLVFLGL 231

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330 248 LLSLAG-LPPLTGFLPKWLIIQELTKQDMALAATVIALLSLLSLFFYLRLAYCTTItlppHTTNYMKQWHTSKPTNPTIA 326
Cdd:MTH00197 232 SFLSLGgLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLI----LSNWMINFLMKINLLYSGLF 307

                        330
                 ....*....|....*.
gi 629677330 327 ILMTLSITLLPIAPMI 342
Cdd:MTH00197 308 ILLMMMLPLLMIFTMI 323
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 2.43e-24

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 100.47  E-value: 2.43e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330   23 SNHWVMAWTGLEINTLAILPLI-SKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWYTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330   91 HPTSCLILTSAISMKLGLVPFHFWFPEVLQGSPLTTGLLL-STAMKLPPLTLLYMTSPSLNPA-----VLTTMAILSAAI 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIRRSLLYLPSSpfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330  165 GGWMGLNQTQIRKIMAFSSISHLGWMAIILA----YDPKLTLLNFYLYSMMTAAVFL-TLNTIKVLKLSTLMTA----WT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLcAGSVIYRRVHTRNIRDygglAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 629677330  236 KTPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-283 4.61e-24

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 102.50  E-value: 4.61e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330  14 ITGTTITISSNHWVMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLF-SSMTNAwYTGQWDITQLTH 91
Cdd:COG1007  112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGIAA 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330  92 PTS------------CLILTSAISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKL----PPLTLLYMTSPSLNPA--- 152
Cdd:COG1007  191 ALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAADwql 270

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330 153 VLTTMAILSAAIGGWMGLNQTQIRKIMAFSSISHLGWM--AIILAYDPKLTLLNFYL--YSMMTAAVFLTLNTIK----- 223
Cdd:COG1007  271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLllGLAAGTPLGVSAALFYLlaYLFMNLGAFAVILLLSrkgge 350

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 629677330 224 VLKLSTLMTAWTKTPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDM------ALAATVIA 283
Cdd:COG1007  351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLywlaviAVLNSVIS 416
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 16-283 1.37e-23

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 99.72  E-value: 1.37e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330  16 GTTITISSNHWVMAWTGLEINTLAILPLI-SKSHHPRAIEAATKYFLTQAAASALVLFS-------------SMTNAWYT 81
Cdd:MTH00196   5 GILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINLVLN 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330  82 GQWDITQLTHPTSCLILTSAISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPLTLLYMTSPSLNpaVLTTMAILS 161
Cdd:MTH00196  85 SGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVN--ILLIGGLFS 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330 162 AAIGGWMGLNQTQIRKIMAFSSISHLGWMAIILAYDP----KLTLLNFYLYSMMTAAVFLTLNTIKVLK--LSTLMTAWT 235
Cdd:MTH00196 163 LFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSICVFSIILALNVYKnlIIEFSGLSR 242

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 629677330 236 KTPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQD------MALAATVIA 283
Cdd:MTH00196 243 RLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQyyliflLAVFCSVIA 296
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 8-267 9.60e-22

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 95.47  E-value: 9.60e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330   8 IFVISLITGTTITISSNHWVMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWYTGQWDI 86
Cdd:MTH00199 101 ILILIVALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSI 180

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330  87 ----TQLTHPTSCLILTSAISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPLTLLYMTSPSLNpaVLTTMAILSA 162
Cdd:MTH00199 181 qginSILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTN--VVLICAVLSI 258

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330 163 AIGGWMGLNQTQIRKIMAFSSISHLGWMAIILAYDP----KLTLLNFYLYSMMTAAVFLTLNTIKVLK--LSTLMTAWTK 236
Cdd:MTH00199 259 IYGAIGALNQTKIKRLLAYSGIGHMGFILFGVAIGSfesiQASLIYMIIYVIMSICSFSIILSLKLTKglIVEVSGLSRK 338

                        250       260       270
                 ....*....|....*....|....*....|.
gi 629677330 237 TPSLNAMLLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00199 339 NPVIALTLALTFLSIAGIPPLAGFLSKWLIL 369
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
16-268 5.15e-21

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 93.35  E-value: 5.15e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330  16 GTTITISSNHWVMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWYTGQWDITQLTHPTS 94
Cdd:PRK05777 115 GMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIAKALA 194

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330  95 ------------CLILTSAISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKL----PPLTLLYMTSPSLNPA---VLT 155
Cdd:PRK05777 195 dgsgnsllllfgLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaVLLRLLVVAFGGLSEDwqqVLA 274

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330 156 TMAILSAAIGGWMGLNQTQIRKIMAFSSISHLGWMAIILAYDPKLTL--LNFYL--YSMMTAAVFLTLNTIK-----VLK 226
Cdd:PRK05777 275 IIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsaVLFYLlaYLFMTLGAFGVISLLRrkggeAES 354

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 629677330 227 LSTLMTAWTKTPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK05777 355 ISDFAGLSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFE 396
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-282 8.40e-21

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 92.70  E-value: 8.40e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330   14 ITGTTITISSNHWVMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWYTGQWDITQLTHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330   93 TSCLILT------------SAISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLP---PLTLLYMTSPSLNPAVLTTM 157
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYILFGFSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330  158 ----AILSAAIGGWMGLNQTQIRKIMAFSSISHLGWMAIILAYDPKLTLLN--FYL--YSMMTAAVFLTLNTIKVLK--- 226
Cdd:TIGR01770 272 laiiAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLSLLRSYKdew 351

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 629677330  227 ---LSTLMTAWTKTPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMALAATVI 282
Cdd:TIGR01770 352 ieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIA 410
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 13-283 4.41e-15

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 75.57  E-value: 4.41e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330  13 LITGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWYTGQWDITQLTH- 91
Cdd:COG0651  116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAAr 195

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330  92 ---------PTSCLILTSAISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAM-KLPP------LTLLYMTSPSLNPA-VL 154
Cdd:COG0651  196 laeldpgllLAAFALLLVGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLtKVGVyailrvLTLLFGADPALFLGtLL 275

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330 155 TTMAILSAAIGGWMGLNQTQIRKIMAFSSISHLGWMAIILAYDPKLTLLNFYLY----SMMTAAVFLTLNTIKVL----K 226
Cdd:COG0651  276 LVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHllnhALAKALLFLAAGAIERAtgtrD 355

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 629677330 227 LSTLMTAWTKTPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMALAATVIA 283
Cdd:COG0651  356 LDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLL 412
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 3-267 2.19e-14

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 74.12  E-value: 2.19e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330   3 PQAKLIFVISLITGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAI---------EAATKYFLTQAAASALVLFS 73
Cdd:MTH00198 187 PRSGFALVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFG 266

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330  74 SMTNAWYTGQ----WDITQLTHPTS----------CLILTSAISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPL 139
Cdd:MTH00198 267 CALYFGFTGNegmlGTILSATLETTnielrqgslgYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVY 346

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330 140 TLLymTSPSLNPAVLTTMAILSAAIGGWMGLNQTQIRKIMAFSSISHLGWMAIILAYDPKLTLLNFYLYSMM----TAAV 215
Cdd:MTH00198 347 ILL--TSLVITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYAVTylvsALAS 424

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 629677330 216 FLTLNTIK---------------------VLKLSTLMTAWTKTPSLNAMLLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00198 425 FTVICTLEefgtrtptsrqrdgsfgnynlVRRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFIL 497
ndhB CHL00049
NADH dehydrogenase subunit 2
 7-263 2.46e-11

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 64.64  E-value: 2.46e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330   7 LIFVISLITGTTITISSNHWVMAWTGLEINTLAILPLISKSHHP-RAIEAATKYFLTQAAASALVL--FSsmtnaWYTGQ 83
Cdd:CHL00049 114 LLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTKKDvRSNEATMKYLLMGGASSSILVygFS-----WLYGL 188

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330  84 -------WDI------TQLTHPTSCLI----LTSAISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPLTL----L 142
Cdd:CHL00049 189 sggeielQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAASALatriF 268

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330 143 YMTSPSLNPA---VLTTMAILSAAIGGWMGLNQTQIRKIMAFSSISHLGWMAI-ILAYDPK------LTLLNFYLysmmt 212
Cdd:CHL00049 269 DIPFYFSSNEwhlLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIgIIVGDSNdgyasmITYMLFYI----- 343

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 629677330 213 aavFLTLNTIKVLKLSTLMTA----------WTKTPSLNAMLLLTLLSLAGLPPLTGFLPK 263
Cdd:CHL00049 344 ---FMNLGTFACIVLFGLRTGtdnirdyaglYTKDPFLALSLALCLLSLGGIPPLAGFFGK 401
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-192 2.03e-10

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 61.61  E-value: 2.03e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330  50 PRAIEAATKYFLTQAAASALVLF-SSMTNAWYTGQwdiTQL--------THPTSCLILT-----SAISMKLGLVPFHFWF 115
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGS---TQLsaialaliTSPSLGLALAlvfviAGIAFKISAVPFHQWT 233

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330 116 PEVLQGSPLTTGLLLSTAMKLP----PLTLLYMTSPSLNP---AVLTTMAILSAAIGGWMGLNQTQIRKIMAFSSISHLG 188
Cdd:PRK02504 234 PDVYEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPSFDEqwkLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAG 313


                 ....
gi 629677330 189 WMAI 192
Cdd:PRK02504 314 FVMI 317
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-266 1.40e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 59.34  E-value: 1.40e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330  33 LEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLFS---------SMTNAWYTGQWDITQLTHPTSCL-ILTSA 101
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGiallygqygTLNMAYLAVKMSENPTVVAKIALaLFIAG 229

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330 102 ISMKLGLVPFHFWFPEVLQGSP--LTTGLLLSTAMKLPPL--TLLYMTSPSLNPA----VLTTMAILSAAIGGWMGLNQT 173
Cdd:PRK08376 230 LAMKSGAVPVHMWLPDAYPAAPssISAMLLVIKQAGLYALarVLFSIYGPAINLAtvgwVIIILGCLTMFVGVAMAVVQK 309

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330 174 QIRKIMAFSSISHLGWMAI-----ILAY-DPKLT----------LLNFYLYSMMTAAVFLT-------LNTIKVLKLSTL 230
Cdd:PRK08376 310 DVKRLLAYHSVSQIGYMLLglgvgLAALgDPAMAsygeialaggIYHIVNHALYKALLFLTagaviyeTGTRNLNELGGL 389

                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 629677330 231 MTAWTKTpslNAMLLLTLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK08376 390 ARTMPKT---TIAFLIGAAAIVGLPPFNGFASKWLI 422
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 49-195 4.43e-09

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 57.40  E-value: 4.43e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330  49 HPRAIEAATKYFLTQAAASALVLFSSMTNAWYTGQW--DITQLTH-----PTSCLILTS---AISMKLGLVPFHFWFPEV 118
Cdd:COG1008  156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAaplplTAQLLLFLAffiAFAVKVPMFPFHTWLPDA 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330 119 LQGSPLTTGLLLSTAM-KLP-------PLTLLYMTSPSLNPAVLTtMAILSAAIGGWMGLNQTQIRKIMAFSSISHLGWM 190
Cdd:COG1008  236 HVEAPTAGSVLLAGVLlKMGgygllrfALPLFPEASAYFAPLLAA-LGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFV 314


                 ....*
gi 629677330 191 AIILA 195
Cdd:COG1008  315 LLGIF 319
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 2-282 6.26e-09

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 57.31  E-value: 6.26e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330   2 NPQAKLIFVISLITGTTITISSNHWVMAWTGLEINTLAILPLISKSHHpRAIEAATKYFLTQAAASALVLFSSMTNAWYT 81
Cdd:PRK08668  96 NDAYFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKT 174

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330  82 GQWDIT-------QLTHPTSCLI----LTSAISMKLGLVPFHFWFPEVLQGSPLT--------------TGLLLSTAMkL 136
Cdd:PRK08668 175 GTFDFAdisqgliNDTSTGFALIvflfLLAFGVAKAGIFPLHVWAPDAYSEAPQSfsavlsgqlsklgaYGFLLVLYV-L 253

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330 137 PPLTLL-----YMTSPSLNpAVLTTMAILSAAIGGWMGLNQTQIRKIMAFSSISHLGWMAIILAYDPKLT----LLNFYL 207
Cdd:PRK08668 254 PGTKLFsefgtYRGVPLFN-YILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGfaggLFHVFN 332

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 629677330 208 YSMMTAAVFLTLNTI----KVLKLSTLMTAWTKTPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMALAATVI 282
Cdd:PRK08668 333 HALFKGLFFLIFAAViyrtGTTKISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMA 411
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-192 6.48e-07

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 50.71  E-value: 6.48e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330   50 PRAIEAATKYFLTQAAASALVLFSSMTNAWYTGQW----DITQLTHPTSC-----LILTSAISMKLGLVPFHFWFPEV-- 118
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGTfdllELLNLPLPFGVqtwlfLAFFIAFAVKVPLFPLHTWLPDAhv 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330  119 ---LQGSPLTTGLLLSTA---MKLPPLTLLYMTSPSLNPaVLTTMAILSAAIGGWMGLNQTQIRKIMAFSSISHLGWMAI 192
Cdd:TIGR01972 232 eapTAGSVILAGVLLKMGtygFLRFNLPLFPDASLYFAP-VLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLL 310
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 96-263 8.06e-07

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 50.69  E-value: 8.06e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330  96 LILTSAISmKLGLVPFHFWFPEVLQGSPLTTGLLLSTAM---------KLPPLtllYMTSPSLNPAVLTtMAILSAAIGG 166
Cdd:PRK12644 208 LILVGALS-KSAIVPFHFWLPGAMAAPTPVSAYLHAAAMvkagiylvaRLAPG---FADVPVWRPTVLV-LGLATMLLGG 282

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330 167 WMGLNQTQIRKIMAFSSISHLGWMAIILAYDPK------LTLLnfYLYSMMTAAVFLTLNTIK-------VLKLSTLmta 233
Cdd:PRK12644 283 WRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRdaalagLAML--LAHALFKAALFLVVGIIDhstgtrdIRKLSGL--- 357

                        170       180       190
                 ....*....|....*....|....*....|
gi 629677330 234 WTKTPSLNAMLLLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12644 358 GRRQPVLAVVAALAAASMAGLPPLLGFVAK 387
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 295-340 2.53e-05

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 41.09  E-value: 2.53e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 629677330  295 RLAYCTTITLPPHTTNYMKQWHTSKPTNPT-IAILMTLSITLLPIAP 340
Cdd:pfam06444   5 RLSYSTTLTLFPNTNNSKMKWRFNSTKNTLlLPTLTTLSILLLPLTP 51
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-282 2.76e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 45.64  E-value: 2.76e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330  33 LEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFS-SMTNAwYTGQWDITQL--------THPTSCLILTSAIS 103
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvGLLYG-VTGTLNMADLagalaenpTVVTAFGFVLLALA 213

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330 104 MKLGLVPFHFWFPEVLQG-SPLTTGLLLSTAMKLP--PLTLLY--------MTSPSLNPAVLTTmAILSAAIGGWMGLNQ 172
Cdd:PRK08375 214 LKAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAvyALIRIYftvfggdfRFALGLGWLLAVL-ALLSMLVGSLAALGQ 292

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330 173 TQIRKIMAFSSISHLGWMAIILAYDPKLTLLN--FYL--YSMMTAAVFLTLNTIKVL----KLSTLMTAWTKTPSLNAML 244
Cdd:PRK08375 293 DDVKRVLAYSTVSQMGYILLGLALLTPLALAAglLHLlhHALMKGALFLAAGAIEVTygtrRLSELSGLGRRMPLTAAAF 372

                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 629677330 245 LLTLLSLAGLPPLTGFLPKWLIIQELTKQDMALAATVI 282
Cdd:PRK08375 373 AVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVL 410
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 48-220 3.69e-05

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 45.53  E-value: 3.69e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330  48 HHPRAIEAATKYFLTQAAASALVLFSSMTNAWYTGQWDITQLTH------------PTSCLILTSAISmKLGLVPFHFWF 115
Cdd:COG1009  156 EKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELLAaaptilssplltLILLLLLLGAFG-KSAQFPLHFWL 234

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330 116 PEVLQG-SPLTTgLLLSTAMKLPPLTLLYMTSP--SLNPAVLTTMAILSAA---IGGWMGLNQTQIRKIMAFSSISHLGW 189
Cdd:COG1009  235 PDAMEGpTPVSA-LLHAATMVKAGVYLLARLSPlfALSPVWLTVVAIIGAItalFAALIALAQTDIKRVLAYSTVSQLGY 313

                        170       180       190
                 ....*....|....*....|....*....|.
gi 629677330 190 MAIILAydpkltllnfylYSMMTAAVFLTLN 220
Cdd:COG1009  314 MFLALG------------VGAYVAALFHLLT 332
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
55-203 4.49e-05

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 45.08  E-value: 4.49e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330  55 AATKYFLTQAAASALVLFSSMTNAWYTG-------QWDITQLTHPTSCLILTS---AISMKLGLVPFHFWFPEV-LQGSP 123
Cdd:PRK06473 158 AATKFLLYTAISGILILVSFLGLVWLSGassfdyePLRSHTLPLSTQLLLLAPilvGFGIKIPLVPFHTWLPDAhVEAST 237

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330 124 LTTGLLLSTAMKLPPLTLL------YMTSPSLNPAVLTTMAILSAAIGGWMGLNQTQIRKIMAFSSISHLGWMAIILAYD 197
Cdd:PRK06473 238 PVSVLLAGVLLKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILLAAAAA 317


                 ....*.
gi 629677330 198 PKLTLL 203
Cdd:PRK06473 318 TPLSIL 323
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
92-268 5.91e-05

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 44.56  E-value: 5.91e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330  92 PTSCLILTSAISMKLGLVPFhFWFPEVLQGSPLTTGLLLSTAMK-------LPPLTLLYMTSPSLNPAVLTTMAILSAAI 164
Cdd:PRK12663 207 TTIALLFLLAFGMKAALFPF-MWLPAAYHTPNTEVAALFAALLTkvgiyalIRVFTLLFPQERELLHPLLATMAAITMVI 285

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330 165 GGWMGLNQTQIRKIMAFSSISHLGWMAIILAYDPKLTLLN--FYL-YSMMT-AAVFLTLNTIKVL----KLSTLMTAWTK 236
Cdd:PRK12663 286 GALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGINGaiFYLvHDMVVkTALFLIAGSLVRLtgyrSLQYLGGLYRK 365

                        170       180       190
                 ....*....|....*....|....*....|..
gi 629677330 237 TPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK12663 366 EPLFGALFLILIFAIGGLPPFSGFWGKVLLVQ 397
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
55-268 6.98e-05

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 44.32  E-value: 6.98e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330  55 AATKYFLTQAAASALVLFSSMTNAWYTGQWD------ITQ-LTHPTSCLILTSAI---SMKLGLVPFHFWFPEV-LQGSP 123
Cdd:PRK07363 158 ASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSfdydaiSTQnLSLNTQLILLTGLLlgfGIKIPLVPLHTWLPDAyTEASP 237

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330 124 LTTGLLLSTAMKLPPLTL------LYMTSPSLNPAVLTTMAILSAAIGGWMGLNQTQIRKIMAFSSISHLGWMAIILAYD 197
Cdd:PRK07363 238 AVAILLGGVLAKLGTYGLlrfglqLFPQTWSLVAPGLAIIGTISVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAAG 317

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330 198 PKLTLLN---------------FYLYSMMTAAVfltlNTIKVLKLSTLMTAWTKTPSLNAMLLLTLLSLAGLPPLTGFLP 262
Cdd:PRK07363 318 TQLSLLGavaqmishglilallFHLVGIVERKV----GTRDLDVLNGLMNPIRGLPLTSALLVLAGMASAGIPGLVGFVA 393


                 ....*.
gi 629677330 263 KWLIIQ 268
Cdd:PRK07363 394 EFIVFQ 399
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 13-192 7.17e-05

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 44.36  E-value: 7.17e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330  13 LITGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAA------SALVLFSSMTNAWYTGQWDI 86
Cdd:PRK08676 111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330  87 TQLTHPTSCL----ILTSAISM------KLGLVPFHFWFPEVLQGSPLTTGLLLSTAM-KLPPLTLLYMTS-------PS 148
Cdd:PRK08676 191 TELAAHASLLspsvLGASFLFIfigflaKSGLVPFHTWLPAAYAKAPSVVSALLSGTVlNIGIYGILRLSAllrqsgaAE 270

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 629677330 149 LNPAVLTTMAILSAAIGGWMGLNQTQIRKIMAFSSISHLGWMAI 192
Cdd:PRK08676 271 QFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLL 314
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 20-195 7.90e-05

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 44.15  E-value: 7.90e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330  20 TISSNHWVMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTnAWYTGQwdiTQLTHPTSCLILT 99
Cdd:PRK06458 124 ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTIL-VYANAA---TVMGDGEMAILWT 199

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330 100 SAISM----------------------KLGLVPFHFWFPEVLQGSP-----LTTGLLLSTAMkLPPLTLLYMTSPSLNPA 152
Cdd:PRK06458 200 ELLKHaslldptlmklafvflligfgtKVGLFPMHAWLPDAHSEAPspvsaLLSGVLLNVAL-YAVLRYYILIDAAIGSD 278

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 629677330 153 ----VLTTMAILSAAIGGWMGLNQTQIRKIMAFSSISHLGWMAIILA 195
Cdd:PRK06458 279 fpgrLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALG 325
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 103-271 9.36e-05

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 44.18  E-value: 9.36e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330 103 SMKLGLvpfHFWFPEVLQGSPLTTGLLLSTAMKLPPLTLLYMTSPSLNPAVLTTMAI-----LSAAIGGWMGLNQTQIRK 177
Cdd:MTH00032 239 SAQLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSFPLFEKAPLTLLIItifgaLTAFFAATVGLVQNDLKK 315

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330 178 IMAFSSISHLGWMAIILAYDPKLTLLNFYL--YSMMTAAVFLTLNTI---------KVLKLSTLMTAwtkTPSLNAMLLL 246
Cdd:MTH00032 316 VIAYSTCSQLGYMVLIIGIEGSHNVGLFHLvnHAFFKALLFLSAGSVihsttvdeqDMRKMGGLIHS---IPFTYTMMLI 392

                        170       180
                 ....*....|....*....|....*
gi 629677330 247 TLLSLAGLPPLTGFLPKWLIIqELT 271
Cdd:MTH00032 393 GSFSIMGLPYLTGFYSKDLIL-ELT 416
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 55-188 2.32e-04

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 42.80  E-value: 2.32e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330  55 AATKYFLTQAAASALVLFSSMTNAWYTGQWDITQLTHPT-----SCLILTSAISMKLGLVPFHFWFPEVLQGSP-----L 124
Cdd:PRK08667 163 AGIFYFVMTQLSTVFLMLGIIVLFIQTGSFELSPLGASAgilslVFLLLFLGFGIKAGIIPFHKWLPYAHPASPsnvsaL 242

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 629677330 125 TTGLLLSTAMKLPPLTLLYMTSPSLNPAVLT-TMAILSAAIGGWMGLNQTQIRKIMAFSSISHLG 188
Cdd:PRK08667 243 MSGVMLKVAVYGLVRFLMDVLSPELWWGVLIlLAGSISALLGVIYALKEHDLKGLLAYSSIENIG 307
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 101-194 2.66e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 42.60  E-value: 2.66e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330 101 AISMKLGLVPFHFWFPEVLQGSPLTTGLLLS-TAMKLPPLTLLYMTSP-------SLNPAVLtTMAILSAAIGGWMGLNQ 172
Cdd:MTH00226 239 AMAVKIPIFPFHIWLPKAHVEAPVAGSVLLAgILLKLGGYGLVRLSWPilplgaqNLAPAVI-AMGIVGIVYGSFATCRQ 317

                         90       100
                 ....*....|....*....|..
gi 629677330 173 TQIRKIMAFSSISHLGWMAIIL 194
Cdd:MTH00226 318 IDVKRLVAYSSVAHMGLVSITL 339
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 50-192 3.61e-04

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 42.11  E-value: 3.61e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330  50 PRAIEAATKYFLTQAAASALVLFSSMTNAWY----TGQWDITQLTH---PTSCLILT-----SAISMKLGLVPFHFWFPE 117
Cdd:PRK05846 157 KNRIYAATKFFLYTLLGSLLMLVAIIYLVVVyynaTGTFDIADLLNlplPPGVQYWLflaffIAFAVKMPMFPLHTWLPD 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330 118 VLQ-----GSPLTTGLLLSTA------MKLPpltLLYMTSPSLNPAVLTtMAILSAAIGGWMGLNQTQIRKIMAFSSISH 186
Cdd:PRK05846 237 AHVqaptaGSVLLAGILLKMGaygllrFSLP---LFPDASHEFAPIIIT-LGVIAIIYGALVALAQTDIKKLIAYSSISH 312


                 ....*.
gi 629677330 187 LGWMAI 192
Cdd:PRK05846 313 MGFVTL 318
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-197 4.73e-04

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 41.94  E-value: 4.73e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330  55 AATKYFLTQAAASALVLFSSMTNAWYTGQ--WDITQLTH---PTSCLILTS-----AISMKLGLVPFHFWFPE------- 117
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGAksyPLALELLLYagfliAFGVKLPIFPLHTWLPDahgeasa 217

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330 118 ----VLQGSPLTTG--LLLSTAMKLPPLTLLYMtSPslnpaVLTTMAILSAAIGGWMGLNQTQIRKIMAFSSISHLGWMA 191
Cdd:PRK12561 218 pvsmILAGVLLKMGgyALIRFNVQMLPDAHVYF-AP-----ALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVL 291


                 ....*..
gi 629677330 192 I-ILAYD 197
Cdd:PRK12561 292 LgIAAFT 298
PRK12650 PRK12650
DUF4040 family protein;
87-190 5.03e-04

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 41.95  E-value: 5.03e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330  87 TQLTHPTSCLILTSAISmKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPLTLLYMTSPSL--NPA---VLTTMAILS 161
Cdd:PRK12650 204 PGLTTVVAVLIAVAAFT-KSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFhdVAVwnwLLIIVGMIT 282

                         90       100
                 ....*....|....*....|....*....
gi 629677330 162 AAIGGWMGLNQTQIRKIMAFSSISHLGWM 190
Cdd:PRK12650 283 ALMGAVFAVQKTDLKKLTAYSTVSQLGWI 311
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 96-267 1.08e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 40.87  E-value: 1.08e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330  96 LILTSAISMKLGLVPFHFWFPEVLQGSPLTTGLLLS-TAMKLPPLTL-----------LYMTSPSLNpAVLTTMAILSAA 163
Cdd:PRK12662 213 LFIMVGLFIKAALFPFHKWLIQAYSEAPSFISVFFSgTSTKVMIYLIirivydvfkanFVFTTLPFN-NVFMILAALAIV 291

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330 164 IGGWMGLNQTQIRKIMAFSSISHLGWMAIILAYDPKLTLLNFYLY----SMMTAAVFLTLNTIK----VLKLSTLMTAWT 235
Cdd:PRK12662 292 FGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFMVSGSISyhfgTTKLEDCLNLWK 371

                        170       180       190
                 ....*....|....*....|....*....|..
gi 629677330 236 KTPSLNAMLLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:PRK12662 372 SMPKITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
52-190 1.89e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 40.01  E-value: 1.89e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330  52 AIEAATKYFLTQAAASALVLFSSMTNAWYTGQWDITQLTHPTSCLILTSAISMKLGLV----------------PFHFWF 115
Cdd:PRK07376 171 AADAAQKAFVVNRVGDFGLLLGILGLFWATGSFDFDGIADRLSELVSSGAVSGWLALLlcilvflgpmaksaqfPLHVWL 250

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330 116 PEVLQGSPLTTGLLLSTAMKLPPLTLLYMTSP--SLNPAVLTTMAI---LSAAIGGWMGLNQTQIRKIMAFSSISHLGWM 190
Cdd:PRK07376 251 PDAMEGPTPISALIHAATMVAAGVFLVARMYPvfEQFPAVMTVIAWtgaITAFLGASIALTQNDIKKGLAYSTISQLGYM 330
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
34-268 3.32e-03

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 39.24  E-value: 3.32e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330  34 EINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWYTGQWDITQ-----LTHPTSCLILTSAISMKLGL 108
Cdd:PRK06277 130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDihnalLVNPTSPVIYGGLLLLIFGL 209

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330 109 V------PFHFWFPEVLQGSPLTTGLLLST-------AMKLPPLTLLYMTS--PSLNpAVLTTMAILSAAIGGWMGLNQT 173
Cdd:PRK06277 210 LygsglpPFHTIKSDIYAKAKPFGSALLQTfskfvlvALMLVIFKLFGGLSyfPSAQ-GVLIALSVLAMVFGVVMALLQT 288

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330 174 QIRKIMAFSSISHLGWMAIILAYDPKLTL-------LNFYLYsmmTAAVFLTLNTI----KVLKLSTLMTAWTKTPSLNA 242
Cdd:PRK06277 289 DYKRLLAYHAISQGGYVAAGLALGTPLGIvagifhaINHVIY---KSALFLGAGIVsyrtKTSNLRKLGGLLPVMPVVAF 365

                        250       260
                 ....*....|....*....|....*.
gi 629677330 243 MLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK06277 366 MVLCAKLAISGVPPFNGFQSKLMLAQ 391
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 95-268 4.37e-03

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 38.90  E-value: 4.37e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330  95 CLILTSAISMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPLTLLYMTSPSLNPAVLTTMAI-----LSAAIGGWMG 169
Cdd:MTH00020 213 CLFLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSSPLFEQAPLALIIVtivgsLTVFFAATVG 292

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330 170 LNQTQIRKIMAFSSISHLGWMAIILAydpkltlLNFY---LYSMMTAAVFLTL------NTIKVL-------KLSTLMTA 233
Cdd:MTH00020 293 LVQNDLKKVIAYSTCSQLGYMVVACG-------LSHYsisLFHLMNHAFFKALlflsagSVIHALsdeqdmrKMGGLISF 365

                        170       180       190
                 ....*....|....*....|....*....|....*
gi 629677330 234 wtkTPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:MTH00020 366 ---LPLTYIFFLIGSLSLMGFPYLTGFYSKDLILE 397
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 109-283 9.30e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 37.98  E-value: 9.30e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330 109 VPFHFWFPEVLQGSPLTTGLLLSTAMKLPPLTLLYMTSPSL--NPAVLTTMAILSAA---IGGWMGLNQTQIRKIMAFSS 183
Cdd:PRK12647 212 FPFHFWLPNAMEAPTPVSAYLHSATMVKAGIYLLARLNPVLggTPLWQTILPLFGGLtmlTGALLAVRQTDLKLILAYST 291

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677330 184 ISHLGWMAIILAYDPKLTLLNFYLY----SMMTAAVFLTLNTIK-------VLKLSTLmtaWTKTPSLNAMLLLTLLSLA 252
Cdd:PRK12647 292 VSALGTLVMLLGLGSELAIKAAVLFlvahSLYKGALFMVAGIIDhetgtrdITKLGGL---RRAMPITAAAALLAALSMA 368

                        170       180       190
                 ....*....|....*....|....*....|....*
gi 629677330 253 GLPPLTGFLPKWLIIQELTKQDMA----LAATVIA 283
Cdd:PRK12647 369 GLPPLFGFLAKELIYEALLEAPLWslilTVAAVLG 403
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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