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Conserved domains on  [gi|629677968|gb|AHY87264|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Riparia chinensis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 super family cl33352
NADH dehydrogenase subunit 2; Provisional
 1-183 2.46e-97

NADH dehydrogenase subunit 2; Provisional


The actual alignment was detected with superfamily member MTH00112:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 285.18  E-value: 2.46e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677968   1 MNPQAKLVFTFSLLLGTTTTITSNHWITAWAGLEINTLSILPLISKSHHPRAIEAATKYFLTQATASALVLFSSMTNAWH 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677968  81 TGQWDITQMTHPTSCLILTSAIAMKLGMVPFHFWFPEVLQGSPLITGLLLSTLMKFPPITLLFMTHHSLNPTLLTCMAIM 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180
                 ....*....|....*....|...
gi 629677968 161 SVALGGWMGLNQTQVRKIQAFSS 183
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSS 183
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-183 2.46e-97

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 285.18  E-value: 2.46e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677968   1 MNPQAKLVFTFSLLLGTTTTITSNHWITAWAGLEINTLSILPLISKSHHPRAIEAATKYFLTQATASALVLFSSMTNAWH 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677968  81 TGQWDITQMTHPTSCLILTSAIAMKLGMVPFHFWFPEVLQGSPLITGLLLSTLMKFPPITLLFMTHHSLNPTLLTCMAIM 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180
                 ....*....|....*....|...
gi 629677968 161 SVALGGWMGLNQTQVRKIQAFSS 183
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSS 183
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 23-183 3.57e-17

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 78.23  E-value: 3.57e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677968  23 SNHWITAWAGLEINTLSILPLIS-KSHHPRAIEAATKYFLTQATASALVLF-SSMTNAWhTGQWDITQMTHPTS------ 94
Cdd:COG1007  121 ANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSLNLAGIAAALAaggans 199

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677968  95 ------CLILTSAIAMKLGMVPFHFWFPEVLQGSPLITGLLLST---------LMKFppITLLFMTHHSLNPTLLTCMAI 159
Cdd:COG1007  200 pllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATapkiaafaaLLRL--LVEAFPGLAADWQLLLAVLAV 277

                        170       180
                 ....*....|....*....|....
gi 629677968 160 MSVALGGWMGLNQTQVRKIQAFSS 183
Cdd:COG1007  278 LSMTVGNLAALAQTNVKRMLAYSS 301
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-183 1.78e-14

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 69.65  E-value: 1.78e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677968   23 SNHWITAWAGLEINTLSILPLI-SKSHHPRAIEAATKYFLTQATASALVLFSSMTNAWHTGQWDITQM-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677968   91 HPTSCLILTSAIAMKLGMVPFHFWFPEVLQGSPL-ITGLLLSTLMKFPPITLLFMT--HHSLNPT---LLTCMAIMSVAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTpVSALLAATLVKAGGYGLIRRSllYLPSSPFiqqILLILAIISMLL 160

                         170
                  ....*....|....*....
gi 629677968  165 GGWMGLNQTQVRKIQAFSS 183
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSS 179
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 23-183 5.66e-14

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 68.82  E-value: 5.66e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677968   23 SNHWITAWAGLEINTLSILPLIS-KSHHPRAIEAATKYFLTQATASALVLFSSMTNAWHTGQWDITQMTHPTSCLILT-- 99
Cdd:TIGR01770 121 SNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFLSNGMLNis 200

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677968  100 ----------SAIAMKLGMVPFHFWFPEVLQGSPLITGLLLSTLMK---FPPITLLFMT-----HHSLNPTLLTCmAIMS 161
Cdd:TIGR01770 201 llllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaiFAVFLRLFLYilfgfSEAWQIFLAII-AFLS 279

                         170       180
                  ....*....|....*....|..
gi 629677968  162 VALGGWMGLNQTQVRKIQAFSS 183
Cdd:TIGR01770 280 MLIGNFGALAQKKVKRLLAYSS 301
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-183 2.46e-97

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 285.18  E-value: 2.46e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677968   1 MNPQAKLVFTFSLLLGTTTTITSNHWITAWAGLEINTLSILPLISKSHHPRAIEAATKYFLTQATASALVLFSSMTNAWH 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677968  81 TGQWDITQMTHPTSCLILTSAIAMKLGMVPFHFWFPEVLQGSPLITGLLLSTLMKFPPITLLFMTHHSLNPTLLTCMAIM 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180
                 ....*....|....*....|...
gi 629677968 161 SVALGGWMGLNQTQVRKIQAFSS 183
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSS 183
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-183 7.64e-78

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 235.59  E-value: 7.64e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677968   1 MNPQAKLVFTFSLLLGTTTTITSNHWITAWAGLEINTLSILPLISKSHHPRAIEAATKYFLTQATASALVLFSSMTNAWH 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677968  81 TGQWDITQMTHPTSCLILTSAIAMKLGMVPFHFWFPEVLQGSPLITGLLLSTLMKFPPITLLFMTHHSLNPTLLTCMAIM 160
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                        170       180
                 ....*....|....*....|...
gi 629677968 161 SVALGGWMGLNQTQVRKIQAFSS 183
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSS 183
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 23-183 2.40e-73

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 224.30  E-value: 2.40e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677968  23 SNHWITAWAGLEINTLSILPLISKSHHPRAIEAATKYFLTQATASALVLFSSMTNAWHTGQWDITQMTHPTSCLILTSAI 102
Cdd:MTH00135  23 SSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGQWDIQQMSHPLPTTMITLAL 102

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677968 103 AMKLGMVPFHFWFPEVLQGSPLITGLLLSTLMKFPPITLLFMTHHSlNPTLLTCMAIMSVALGGWMGLNQTQVRKIQAFS 182
Cdd:MTH00135 103 ALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLTSTLVGGWGGLNQTQLRKILAYS 181


                 .
gi 629677968 183 S 183
Cdd:MTH00135 182 S 182
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-183 5.93e-69

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 213.17  E-value: 5.93e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677968   1 MNPQAKLVFTFSLLLGTTTTITSNHWITAWAGLEINTLSILPLISKSHHPRAIEAATKYFLTQATASALVLFSSMTNAWH 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677968  81 TGQWDITQMTHPTSCLILTSAIAMKLGMVPFHFWFPEVLQGSPLITGLLLSTLMKFPPITLLFMTHHSLNPTLLTCMAIM 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180
                 ....*....|....*....|...
gi 629677968 161 SVALGGWMGLNQTQVRKIQAFSS 183
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSS 183
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-183 1.79e-58

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 186.33  E-value: 1.79e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677968   1 MNPQAKLVFTFSLLLGTTTTITSNHWITAWAGLEINTLSILPLISKSHHPRAIEAATKYFLTQATASALVLFSSMTNAWH 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677968  81 TGQWDITQMTHPTSCLILTSAIAMKLGMVPFHFWFPEVLQGSPLITGLLLSTLMKFPPITLLFMTHHSLNPTLLTCMAIM 160
Cdd:MTH00200  81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                        170       180
                 ....*....|....*....|...
gi 629677968 161 SVALGGWMGLNQTQVRKIQAFSS 183
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSS 183
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 23-183 1.65e-56

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 181.28  E-value: 1.65e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677968  23 SNHWITAWAGLEINTLSILPLISKSHHPRAIEAATKYFLTQATASALVLFSSMTNAWHTGQWDITQMTHPTSCLILTSAI 102
Cdd:MTH00041  23 SNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGPLNTLSSIIITLAL 102

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677968 103 AMKLGMVPFHFWFPEVLQGSPLITGLLLSTLMKFPPITLLFMTHHSLNPTLLTCMAIMSVALGGWMGLNQTQVRKIQAFS 182
Cdd:MTH00041 103 ALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGGWGGLNQTQTRKILAFS 182


                 .
gi 629677968 183 S 183
Cdd:MTH00041 183 S 183
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-183 9.28e-33

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 119.16  E-value: 9.28e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677968   1 MNPQAKLVFTFSLLLGTTTTITSNHWITAWAGLEINTLSILPLISKSHHPRAIEAATKYFLTQATASALVLFSSMTNAWh 80
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677968  81 tgqwdITQMTHPTSCLILTSAIAMKLGMVPFHFWFPEVLQGSPLITGLLLSTLMKFPPITLLFMThhsLNPTLLTCMAIM 160
Cdd:MTH00160  81 -----NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIIL 152

                        170       180
                 ....*....|....*....|...
gi 629677968 161 SVALGGWMGLNQTQVRKIQAFSS 183
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSS 175
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 23-183 3.17e-29

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 109.98  E-value: 3.17e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677968  23 SNHWITAWAGLEINTLSILPLISKSHHPRAIEAATKYFLTQATASALVLFSSMTNAWHTGQWDITqmthptscLILTSAI 102
Cdd:MTH00144  23 SSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFSM--------SLLLLGL 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677968 103 AMKLGMVPFHFWFPEVLQGSPLITGLLLSTLMKFPPITLLFMTHHSLNPTLLTC-MAIMSVALGGWMGLNQTQVRKIQAF 181
Cdd:MTH00144  95 CLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAYLLCvISVLSALVGSIGGLNQTQVRALLAY 174


                 ..
gi 629677968 182 SS 183
Cdd:MTH00144 175 SS 176
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 23-183 5.10e-26

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 101.39  E-value: 5.10e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677968  23 SNHWITAWAGLEINTLSILPLISKSHHPRAIEAATKYFLTQATASALVLFSSmtnawhTGQWDITQMTHPTSCLILTSAI 102
Cdd:MTH00011  25 SNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWSFPSLLKNITALMLLVSL 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677968 103 AMKLGMVPFHFWFPEVLQGSPLITGLLLSTLMKFPPITLLFMTHHSLNPTLLTCMAIMSVALGGWMGLNQTQVRKIQAFS 182
Cdd:MTH00011  99 MLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLGGMNQTQLRPLLAYS 178


                 .
gi 629677968 183 S 183
Cdd:MTH00011 179 S 179
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 23-183 6.14e-20

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 84.72  E-value: 6.14e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677968  23 SNHWITAWAGLEINTLSILPLISKSHHPRAIEAATKYFLTQATASALVLFSSMTNAWHTgqwditqMTHPTSCLILTSAI 102
Cdd:MTH00197  17 SSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL-------YLSLLSVVLVILGL 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677968 103 AMKLGMVPFHFWFPEVLQGSPLITGLLLSTLMKFPPITLLfmTHHSLNPTLLTCMAIMSVALGGWMGLNQTQVRKIQAFS 182
Cdd:MTH00197  90 LLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLIL--AFNSSSFMGLLICSVLSSLIGGIGGMNQSNIRQLLAYS 167


                 .
gi 629677968 183 S 183
Cdd:MTH00197 168 S 168
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 23-183 3.57e-17

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 78.23  E-value: 3.57e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677968  23 SNHWITAWAGLEINTLSILPLIS-KSHHPRAIEAATKYFLTQATASALVLF-SSMTNAWhTGQWDITQMTHPTS------ 94
Cdd:COG1007  121 ANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSLNLAGIAAALAaggans 199

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677968  95 ------CLILTSAIAMKLGMVPFHFWFPEVLQGSPLITGLLLST---------LMKFppITLLFMTHHSLNPTLLTCMAI 159
Cdd:COG1007  200 pllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATapkiaafaaLLRL--LVEAFPGLAADWQLLLAVLAV 277

                        170       180
                 ....*....|....*....|....
gi 629677968 160 MSVALGGWMGLNQTQVRKIQAFSS 183
Cdd:COG1007  278 LSMTVGNLAALAQTNVKRMLAYSS 301
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 23-182 5.90e-16

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 74.30  E-value: 5.90e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677968  23 SNHWITAWAGLEINTLSILPLI-SKSHHPRAIEAATKYFLTQATASALVLFS-------------SMTNAWHTGQWDITQ 88
Cdd:MTH00196  12 SSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINLVLNSGQSFSS 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677968  89 MTHPTSCLILTSAIAMKLGMVPFHFWFPEVLQGSPLITGLLLSTLMKFPPITLLFMThhSLNPTLLTCMAIMSVALGGWM 168
Cdd:MTH00196  92 VSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSI--GLNVNILLIGGLFSLFVGAIG 169

                        170
                 ....*....|....
gi 629677968 169 GLNQTQVRKIQAFS 182
Cdd:MTH00196 170 ALNQTKIKRLLAYS 183
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 23-182 1.34e-14

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 70.82  E-value: 1.34e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677968  23 SNHWITAWAGLEINTLSILPLIS-KSHHPRAIEAATKYFLTQATASALVLFSSMTNAWHTGQWDI----TQMTHPTSCLI 97
Cdd:MTH00199 116 SINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIqginSILTGDVGKIL 195

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677968  98 LTSAIAMKLGMVPFHFWFPEVLQGSPLITGLLLSTLMKFPPITLLFMTHHSLNpTLLTCmAIMSVALGGWMGLNQTQVRK 177
Cdd:MTH00199 196 ITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTN-VVLIC-AVLSIIYGAIGALNQTKIKR 273


                 ....*
gi 629677968 178 IQAFS 182
Cdd:MTH00199 274 LLAYS 278
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-183 1.78e-14

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 69.65  E-value: 1.78e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677968   23 SNHWITAWAGLEINTLSILPLI-SKSHHPRAIEAATKYFLTQATASALVLFSSMTNAWHTGQWDITQM-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677968   91 HPTSCLILTSAIAMKLGMVPFHFWFPEVLQGSPL-ITGLLLSTLMKFPPITLLFMT--HHSLNPT---LLTCMAIMSVAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTpVSALLAATLVKAGGYGLIRRSllYLPSSPFiqqILLILAIISMLL 160

                         170
                  ....*....|....*....
gi 629677968  165 GGWMGLNQTQVRKIQAFSS 183
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSS 179
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
23-183 2.34e-14

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 69.85  E-value: 2.34e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677968  23 SNHWITAWAGLEINTLSILPLIS-KSHHPRAIEAATKYFLTQATASALVLFSSMTNAWHTGQWDITQMTHPTS------- 94
Cdd:PRK05777 122 ANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIAKALAdgsgnsl 201

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677968  95 -----CLILTSAIAMKLGMVPFHFWFPEVLQGSPLITGLLLSTLMK---FPPITLLFMT-----HHSLNPtLLTCMAIMS 161
Cdd:PRK05777 202 lllfgLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaaFAVLLRLLVVafgglSEDWQQ-VLAIIAIAS 280

                        170       180
                 ....*....|....*....|..
gi 629677968 162 VALGGWMGLNQTQVRKIQAFSS 183
Cdd:PRK05777 281 MLVGNLAALSQTNIKRLLAYSS 302
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 23-183 5.66e-14

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 68.82  E-value: 5.66e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677968   23 SNHWITAWAGLEINTLSILPLIS-KSHHPRAIEAATKYFLTQATASALVLFSSMTNAWHTGQWDITQMTHPTSCLILT-- 99
Cdd:TIGR01770 121 SNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFLSNGMLNis 200

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677968  100 ----------SAIAMKLGMVPFHFWFPEVLQGSPLITGLLLSTLMK---FPPITLLFMT-----HHSLNPTLLTCmAIMS 161
Cdd:TIGR01770 201 llllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaiFAVFLRLFLYilfgfSEAWQIFLAII-AFLS 279

                         170       180
                  ....*....|....*....|..
gi 629677968  162 VALGGWMGLNQTQVRKIQAFSS 183
Cdd:TIGR01770 280 MLIGNFGALAQKKVKRLLAYSS 301
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 23-182 5.88e-13

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 66.04  E-value: 5.88e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677968  23 SNHWITAWAGLEINTLSILPLISKSHHPRAI---------EAATKYFLTQATASALVLFSSMTNAWHTGQ----WDITQM 89
Cdd:MTH00198 207 SANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNegmlGTILSA 286

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677968  90 THPTS----------CLILTSAIAMKLGMVPFHFWFPEVLQGSPLITGLLLSTLMKFPPITLLfmTHHSLNPTLLTCMAI 159
Cdd:MTH00198 287 TLETTnielrqgslgYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILL--TSLVITSKLLLSVAI 364

                        170       180
                 ....*....|....*....|...
gi 629677968 160 MSVALGGWMGLNQTQVRKIQAFS 182
Cdd:MTH00198 365 ISLVVGAFGALNQTRIKRLLAYS 387
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 30-183 1.74e-09

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 55.92  E-value: 1.74e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677968  30 WAGLEINTLSILPLISKSHHPRAIEAATKYFLTQATASALVLFSSMTNAWHTGQWDITQMTH----------PTSCLILT 99
Cdd:COG0651  133 FVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAArlaeldpgllLAAFALLL 212

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677968 100 SAIAMKLGMVPFHFWFPEVLQGSP-----LITGLLLST----LMKFppITLLFMTHHSLNP-TLLTCMAIMSVALGGWMG 169
Cdd:COG0651  213 VGFGIKAALFPLHFWLPDAYPAAPspvsaLLSGLLTKVgvyaILRV--LTLLFGADPALFLgTLLLVLGLLTMLVGALGA 290

                        170
                 ....*....|....
gi 629677968 170 LNQTQVRKIQAFSS 183
Cdd:COG0651  291 LAQRDLKRLLAYSS 304
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-183 3.24e-09

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 55.06  E-value: 3.24e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677968  50 PRAIEAATKYFLTQATASALVLF-SSMTNAWHTGQWDITQM-----THPTSCLILT-----SAIAMKLGMVPFHFWFPEV 118
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGSTQLSAIalaliTSPSLGLALAlvfviAGIAFKISAVPFHQWTPDV 236

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 629677968 119 LQGSPLITGLLLSTLMKFP----PITLLFMTHHSLNP---TLLTCMAIMSVALGGWMGLNQTQVRKIQAFSS 183
Cdd:PRK02504 237 YEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPSFDEqwkLLFTALAILSMVLGNVVALAQTSMKRMLAYSS 308
ndhB CHL00049
NADH dehydrogenase subunit 2
 51-183 8.98e-09

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 53.85  E-value: 8.98e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677968  51 RAIEAATKYFLTQATASALVL--FSSM--TNAWHTGQWDI------TQMTHPTSCLI----LTSAIAMKLGMVPFHFWFP 116
Cdd:CHL00049 159 RSNEATMKYLLMGGASSSILVygFSWLygLSGGEIELQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTP 238

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 629677968 117 EVLQGSPL-----------ITGLLLSTLMkfppITLLFMTHHSLNPTLLTCMAIMSVALGGWMGLNQTQVRKIQAFSS 183
Cdd:CHL00049 239 DVYEGSPTpvvaflsvtskVAASALATRI----FDIPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSS 312
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 49-183 3.77e-07

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 48.92  E-value: 3.77e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677968  49 HPRAIEAATKYFLTQATASALVLFSSMTNAWHTGQW--DI-----TQMTHPTSCLILTS---AIAMKLGMVPFHFWFPEV 118
Cdd:COG1008  156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIaelaaAPLPLTAQLLLFLAffiAFAVKVPMFPFHTWLPDA 235

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 629677968 119 LQ-----GSPLITGLLLST----LMKFpPITLLFMTHHSLNPTLLTcMAIMSVALGGWMGLNQTQVRKIQAFSS 183
Cdd:COG1008  236 HVeaptaGSVLLAGVLLKMggygLLRF-ALPLFPEASAYFAPLLAA-LGVIGIIYGALVALAQTDLKRLIAYSS 307
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-183 1.06e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 42.01  E-value: 1.06e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677968  33 LEINTLSILPLIS-KSHHPRAIEAATKYFLTQATASALVLFSSmtnAWHTGQWDITQMTHPTSCL-------------IL 98
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGI---ALLYGQYGTLNMAYLAVKMsenptvvakialaLF 226

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677968  99 TSAIAMKLGMVPFHFWFPEVLQGSPL-ITGLLLstLMKFPPITLLFMTHHSL-----NPT----LLTCMAIMSVALGGWM 168
Cdd:PRK08376 227 IAGLAMKSGAVPVHMWLPDAYPAAPSsISAMLL--VIKQAGLYALARVLFSIygpaiNLAtvgwVIIILGCLTMFVGVAM 304

                        170
                 ....*....|....*
gi 629677968 169 GLNQTQVRKIQAFSS 183
Cdd:PRK08376 305 AVVQKDVKRLLAYHS 319
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-183 1.49e-04

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 41.46  E-value: 1.49e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677968   50 PRAIEAATKYFLTQATASALVLFSSMTNAWHTG------QWDITQMTHPTSCLILTS---AIAMKLGMVPFHFWFPEV-- 118
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGgtfdllELLNLPLPFGVQTWLFLAffiAFAVKVPLFPLHTWLPDAhv 231

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 629677968  119 ---LQGSPLITGLLLST---------LMKFPPITLLFMthhslnpTLLTCMAIMSVALGGWMGLNQTQVRKIQAFSS 183
Cdd:TIGR01972 232 eapTAGSVILAGVLLKMgtygflrfnLPLFPDASLYFA-------PVLAALGVIAIIYGALIALAQTDIKRLIAYSS 301
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-183 3.53e-03

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 37.32  E-value: 3.53e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677968  55 AATKYFLTQATASALVLFSSMTNAWHTGQ--WDITQMTH---PTSCLILTSA---IA--MKLGMVPFHFWFPEV-----L 119
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGAksyPLALELLLYAgflIAfgVKLPIFPLHTWLPDAhgeasA 217

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 629677968 120 QGSPLITGLLLST----LMKFpPITLLFMTHHSLNPtLLTCMAIMSVALGGWMGLNQTQVRKIQAFSS 183
Cdd:PRK12561 218 PVSMILAGVLLKMggyaLIRF-NVQMLPDAHVYFAP-ALAILGVVNIIYGALNAFAQDNVKRRLAYSS 283
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 23-183 4.92e-03

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 36.83  E-value: 4.92e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677968  23 SNHWITAWAGLEINTLSILPLISKSHHPRAIEAATKYFLTQATASALVLFSSM---TNAWhtgqwdiTQMTHPTSCLILT 99
Cdd:PRK06458 127 SNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTIlvyANAA-------TVMGDGEMAILWT 199

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677968 100 SAIAM----------------------KLGMVPFHFWFPEVLQGSP-----LITGLLLST----LMKFPPITLLFMTHHS 148
Cdd:PRK06458 200 ELLKHaslldptlmklafvflligfgtKVGLFPMHAWLPDAHSEAPspvsaLLSGVLLNValyaVLRYYILIDAAIGSDF 279

                        170       180       190
                 ....*....|....*....|....*....|....*
gi 629677968 149 LNPtLLTCMAIMSVALGGWMGLNQTQVRKIQAFSS 183
Cdd:PRK06458 280 PGR-LLLIFGLLSVLVAAFFLLRQRDIKRLFAYSS 313
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 48-183 5.59e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 36.73  E-value: 5.59e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677968  48 HHPRAIEAATKYFLTQATASALVLFSSMTNAWHTGQWDITQMTHPTS---------------CLILTSAiAMKLGMVPFH 112
Cdd:PRK12649 156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSElienikghplflitlILIFIGA-AAKSAQGPFY 234

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 629677968 113 FWFPEVLQGSPLITGLLLSTLMKFPPITLLFMTHHSLNPT-----LLTCMAIMSVALGGWMGLNQTQVRKIQAFSS 183
Cdd:PRK12649 235 IWLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYST 310
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-183 6.36e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 36.40  E-value: 6.36e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677968  33 LEINTLSILPLISKSHHPRAIEAATKYFLTQATASALVLFS-----SMTNAWHTGqwDITQMTHPTSCL-----ILTSAI 102
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvgllyGVTGTLNMA--DLAGALAENPTVvtafgFVLLAL 212

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629677968 103 AMKLGMVPFHFWFPEVLQG-SPLITGLLLSTLMK----------FPPITLLFMTHHSLNpTLLTCMAIMSVALGGWMGLN 171
Cdd:PRK08375 213 ALKAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKvavyaliriyFTVFGGDFRFALGLG-WLLAVLALLSMLVGSLAALG 291

                        170
                 ....*....|..
gi 629677968 172 QTQVRKIQAFSS 183
Cdd:PRK08375 292 QDDVKRVLAYST 303
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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