|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-350 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 708.21 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 1 WWNFGSLLGICLITQIVTGLLLAMHYTADTSLAFESVAHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGLYYGSYLN 80
Cdd:MTH00119 31 WWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLY 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 81 KETWNVGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWLWGGFSVDNPTLTRFFAIHFLLPFVI 160
Cdd:MTH00119 111 KETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLI 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 161 AGLTLVHLTFLHDTGSNNPLGIPSDCDKIPFHPYYSIKDILGFVLLFIPLATLALFAPNLLGDPENFTPANPLATPPHIK 240
Cdd:MTH00119 191 AGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIK 270
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 241 PEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLIPLLHTSKLRSMTFRPLSQILFWTLVANLLILTWVGSQPVEHPFII 320
Cdd:MTH00119 271 PEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFII 350
|
330 340 350
....*....|....*....|....*....|
gi 629679708 321 IGQLASISYFTIILVLFPLVSILENKLLKL 350
Cdd:MTH00119 351 IGQLASILYFTILLILFPLLGALENKMLNY 380
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-344 |
2.07e-131 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 380.68 E-value: 2.07e-131
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 1 WWNFGSLLGICLITQIVTGLLLAMHYTADTSLAFESVAHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGLYYGSY-- 78
Cdd:COG1290 39 SYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYkk 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 79 ---LNketWNVGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWLWGGFSVDNPTLTRFFAIH-F 154
Cdd:COG1290 119 preLN---WIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvL 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 155 LLPFVIAGLTLVHLTFLHDTGSNNPLGI----PSDCDKIPFHPYYSIKDILGFVLLFIPLATLALFAPNllGDPENFTPA 230
Cdd:COG1290 196 LLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPA 273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 231 NPLATPPHIKPEWYFLFAYAILRSIP--NKLGGVLALAASVLVLFLIPLLHTSKLRSMTFRPLSQILFWTLVANLLILTW 308
Cdd:COG1290 274 NPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTI 353
|
330 340 350
....*....|....*....|....*....|....*.
gi 629679708 309 VGSQPVehPFIIIGQLASISYFTIILVLFPLVSILE 344
Cdd:COG1290 354 LGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-177 |
1.26e-84 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 254.60 E-value: 1.26e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 1 WWNFGSLLGICLITQIVTGLLLAMHYTADTSLAFESVAHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGLYYGSYLN 80
Cdd:cd00284 22 WWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKK 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 81 --KETWNVGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWLWGGFSVDNPTLTRFFAIHFLLPF 158
Cdd:cd00284 102 prELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPF 181
|
170
....*....|....*....
gi 629679708 159 VIAGLTLVHLTFLHDTGSN 177
Cdd:cd00284 182 IIAVIVILHLLFLHEQGSS 200
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
1-175 |
1.37e-73 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 226.11 E-value: 1.37e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 1 WWNFGSLLGICLITQIVTGLLLAMHYTADTSLAFESVAHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGLYYG--SY 78
Cdd:pfam00033 13 WYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSY 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 79 LNKETWNVGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWLWGGFSVDNPTLTRFFAIHFLLPF 158
Cdd:pfam00033 93 PRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPF 172
|
170
....*....|....*..
gi 629679708 159 VIAGLTLVHLTFLHDTG 175
Cdd:pfam00033 173 ILAILMLLHLLFLHETG 189
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
210-301 |
1.59e-11 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 61.74 E-value: 1.59e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 210 LATLALFAPNLLGDPenftpANPLATPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLIPLLHT-SKLRSMTF 288
Cdd:TIGR01156 51 VVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENvNKFQNPFR 125
|
90
....*....|....*
gi 629679708 289 RPLSQI--LFWTLVA 301
Cdd:TIGR01156 126 RPVATTvfLFGTVVA 140
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-350 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 708.21 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 1 WWNFGSLLGICLITQIVTGLLLAMHYTADTSLAFESVAHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGLYYGSYLN 80
Cdd:MTH00119 31 WWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLY 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 81 KETWNVGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWLWGGFSVDNPTLTRFFAIHFLLPFVI 160
Cdd:MTH00119 111 KETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLI 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 161 AGLTLVHLTFLHDTGSNNPLGIPSDCDKIPFHPYYSIKDILGFVLLFIPLATLALFAPNLLGDPENFTPANPLATPPHIK 240
Cdd:MTH00119 191 AGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIK 270
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 241 PEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLIPLLHTSKLRSMTFRPLSQILFWTLVANLLILTWVGSQPVEHPFII 320
Cdd:MTH00119 271 PEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFII 350
|
330 340 350
....*....|....*....|....*....|
gi 629679708 321 IGQLASISYFTIILVLFPLVSILENKLLKL 350
Cdd:MTH00119 351 IGQLASILYFTILLILFPLLGALENKMLNY 380
|
|
| CYTB |
MTH00100 |
cytochrome b; Provisional |
1-349 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177162 [Multi-domain] Cd Length: 379 Bit Score: 657.10 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 1 WWNFGSLLGICLITQIVTGLLLAMHYTADTSLAFESVAHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGLYYGSYLN 80
Cdd:MTH00100 30 WWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLF 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 81 KETWNVGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWLWGGFSVDNPTLTRFFAIHFLLPFVI 160
Cdd:MTH00100 110 LETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFII 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 161 AGLTLVHLTFLHDTGSNNPLGIPSDCDKIPFHPYYSIKDILGFVLLFIPLATLALFAPNLLGDPENFTPANPLATPPHIK 240
Cdd:MTH00100 190 TALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIK 269
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 241 PEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLIPLLHTSKLRSMTFRPLSQILFWTLVANLLILTWVGSQPVEHPFII 320
Cdd:MTH00100 270 PEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFII 349
|
330 340
....*....|....*....|....*....
gi 629679708 321 IGQLASISYFTIILVLFPLVSILENKLLK 349
Cdd:MTH00100 350 IGQLASILYFLIILILMPIASLIENNLLK 378
|
|
| CYTB |
MTH00131 |
cytochrome b; Provisional |
1-349 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177189 [Multi-domain] Cd Length: 380 Bit Score: 654.80 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 1 WWNFGSLLGICLITQIVTGLLLAMHYTADTSLAFESVAHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGLYYGSYLN 80
Cdd:MTH00131 30 WWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLY 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 81 KETWNVGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWLWGGFSVDNPTLTRFFAIHFLLPFVI 160
Cdd:MTH00131 110 KETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVI 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 161 AGLTLVHLTFLHDTGSNNPLGIPSDCDKIPFHPYYSIKDILGFVLLFIPLATLALFAPNLLGDPENFTPANPLATPPHIK 240
Cdd:MTH00131 190 AAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIK 269
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 241 PEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLIPLLHTSKLRSMTFRPLSQILFWTLVANLLILTWVGSQPVEHPFII 320
Cdd:MTH00131 270 PEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIGGMPVEHPFII 349
|
330 340
....*....|....*....|....*....
gi 629679708 321 IGQLASISYFTIILVLFPLVSILENKLLK 349
Cdd:MTH00131 350 IGQVASVLYFSLFLVLMPLAGWLENKALE 378
|
|
| CYTB |
MTH00074 |
cytochrome b; Provisional |
1-350 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177145 [Multi-domain] Cd Length: 380 Bit Score: 628.63 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 1 WWNFGSLLGICLITQIVTGLLLAMHYTADTSLAFESVAHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGLYYGSYLN 80
Cdd:MTH00074 31 LWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMY 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 81 KETWNVGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWLWGGFSVDNPTLTRFFAIHFLLPFVI 160
Cdd:MTH00074 111 KETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLI 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 161 AGLTLVHLTFLHDTGSNNPLGIPSDCDKIPFHPYYSIKDILGFVLLFIPLATLALFAPNLLGDPENFTPANPLATPPHIK 240
Cdd:MTH00074 191 AGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQ 270
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 241 PEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLIPLLHTSKLRSMTFRPLSQILFWTLVANLLILTWVGSQPVEHPFII 320
Cdd:MTH00074 271 PEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVANTLILTWIGGQPVEDPFIE 350
|
330 340 350
....*....|....*....|....*....|
gi 629679708 321 IGQLASISYFTIILVLFPLVSILENKLLKL 350
Cdd:MTH00074 351 IGQAASILYFLLFIIIIPLTGWLENKLLKW 380
|
|
| CYTB |
MTH00191 |
cytochrome b; Provisional |
1-339 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177239 [Multi-domain] Cd Length: 365 Bit Score: 605.76 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 1 WWNFGSLLGICLITQIVTGLLLAMHYTADTSLAFESVAHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGLYYGSYLN 80
Cdd:MTH00191 27 WWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLN 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 81 KETWNVGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWLWGGFSVDNPTLTRFFAIHFLLPFVI 160
Cdd:MTH00191 107 KETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLI 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 161 AGLTLVHLTFLHDTGSNNPLGIPSDCDKIPFHPYYSIKDILGFVLLFIPLATLALFAPNLLGDPENFTPANPLATPPHIK 240
Cdd:MTH00191 187 AALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIK 266
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 241 PEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLIPLLHTSKLRSMTFRPLSQILFWTLVANLLILTWVGSQPVEHPFII 320
Cdd:MTH00191 267 PEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANFILLTWLGGQPVEDPFIL 346
|
330
....*....|....*....
gi 629679708 321 IGQLASISYFTIILVLFPL 339
Cdd:MTH00191 347 LGQISSFLYFFLFLLLFPL 365
|
|
| CYTB |
MTH00156 |
cytochrome b; Provisional |
1-337 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 592.14 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 1 WWNFGSLLGICLITQIVTGLLLAMHYTADTSLAFESVAHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGLYYGSYLN 80
Cdd:MTH00156 20 WWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 81 KETWNVGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWLWGGFSVDNPTLTRFFAIHFLLPFVI 160
Cdd:MTH00156 100 KHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFII 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 161 AGLTLVHLTFLHDTGSNNPLGIPSDCDKIPFHPYYSIKDILGFVLLFIPLATLALFAPNLLGDPENFTPANPLATPPHIK 240
Cdd:MTH00156 180 LAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQ 259
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 241 PEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLIPLLHTSKLRSMTFRPLSQILFWTLVANLLILTWVGSQPVEHPFII 320
Cdd:MTH00156 260 PEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYIL 339
|
330
....*....|....*..
gi 629679708 321 IGQLASISYFTIILVLF 337
Cdd:MTH00156 340 TGQILTILYFLYFIINP 356
|
|
| CYTB |
MTH00034 |
cytochrome b; Validated |
1-348 |
0e+00 |
|
cytochrome b; Validated
Pssm-ID: 177109 [Multi-domain] Cd Length: 379 Bit Score: 586.29 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 1 WWNFGSLLGICLITQIVTGLLLAMHYTADTSLAFESVAHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGLYYGSYLN 80
Cdd:MTH00034 30 WWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVN 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 81 KETWNVGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWLWGGFSVDNPTLTRFFAIHFLLPFVI 160
Cdd:MTH00034 110 IETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFII 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 161 AGLTLVHLTFLHDTGSNNPLGIPSDCDKIPFHPYYSIKDILGFVLLFIPLATLALFAPNLLGDPENFTPANPLATPPHIK 240
Cdd:MTH00034 190 AALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQ 269
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 241 PEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLIPLLHTSKLRSMTFRPLSQILFWTLVANLLILTWVGSQPVEHPFII 320
Cdd:MTH00034 270 PEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIATFFILTWIGSQPVEYPFIL 349
|
330 340
....*....|....*....|....*...
gi 629679708 321 IGQLASISYFTIILVLFPLVSILENKLL 348
Cdd:MTH00034 350 LGQVASVLYFSLFLFFFPLISYLENKLI 377
|
|
| CYTB |
MTH00145 |
cytochrome b; Provisional |
1-348 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177203 [Multi-domain] Cd Length: 379 Bit Score: 584.56 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 1 WWNFGSLLGICLITQIVTGLLLAMHYTADTSLAFESVAHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGLYYGSYLN 80
Cdd:MTH00145 31 WWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLM 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 81 KETWNVGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWLWGGFSVDNPTLTRFFAIHFLLPFVI 160
Cdd:MTH00145 111 QHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVI 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 161 AGLTLVHLTFLHDTGSNNPLGIPSDCDKIPFHPYYSIKDILGFVLLFIPLATLALFAPNLLGDPENFTPANPLATPPHIK 240
Cdd:MTH00145 191 LGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQ 270
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 241 PEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLIPLLHTSKLRSMTFRPLSQILFWTLVANLLILTWVGSQPVEHPFII 320
Cdd:MTH00145 271 PEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNFFILTWIGACPVEEPYET 350
|
330 340
....*....|....*....|....*...
gi 629679708 321 IGQLASISYFTIILVLfPLVSILENKLL 348
Cdd:MTH00145 351 IGQVFTVLYFLFFLIL-PLVQKLWDNIL 377
|
|
| CYTB |
MTH00016 |
cytochrome b; Validated |
1-349 |
0e+00 |
|
cytochrome b; Validated
Pssm-ID: 177102 [Multi-domain] Cd Length: 378 Bit Score: 545.43 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 1 WWNFGSLLGICLITQIVTGLLLAMHYTADTSLAFESVAHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGLYYGSYLN 80
Cdd:MTH00016 31 WWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFL 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 81 KETWNVGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWLWGGFSVDNPTLTRFFAIHFLLPFVI 160
Cdd:MTH00016 111 METWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVI 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 161 AGLTLVHLTFLHDTGSNNPLGIPSDCDKIPFHPYYSIKDILGFVLLFIPLATLALFAPNLLGDPENFTPANPLATPPHIK 240
Cdd:MTH00016 191 AALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIK 270
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 241 PEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLIPLLHTSKLRSMTFRPLSQILFWTLVANLLILTWVGSQPVEHPFII 320
Cdd:MTH00016 271 PEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVSNFLLLTWIGGRPVEPPYEF 350
|
330 340
....*....|....*....|....*....
gi 629679708 321 IGQLASISYFTiILVLFPLVSILENKLLK 349
Cdd:MTH00016 351 LGQIFTVFYFF-YFMINPLLMKLWDKLLK 378
|
|
| CYTB |
MTH00053 |
cytochrome b; Provisional |
2-350 |
3.68e-178 |
|
cytochrome b; Provisional
Pssm-ID: 164624 [Multi-domain] Cd Length: 381 Bit Score: 498.85 E-value: 3.68e-178
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 2 WNFGSLLGICLITQIVTGLLLAMHYTADTSLAFESVAHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGLYYGSYLNK 81
Cdd:MTH00053 32 WNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKI 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 82 ETWNVGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWLWGGFSVDNPTLTRFFAIHFLLPFVIA 161
Cdd:MTH00053 112 IVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILA 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 162 GLTLVHLTFLHDTGSNNPLGIPSDCDKIPFHPYYSIKDILGFVLLFIPLATLALFAPNLLGDPENFTPANPLATPPHIKP 241
Cdd:MTH00053 192 GLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKP 271
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 242 EWYFLFAYAILRSIPNKLGGVLALAASVLVLFLIPLLHTSKLRSMTFRPLSQILFWTLVANLLILTWVGSQPVEHPFIII 321
Cdd:MTH00053 272 EWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFFLLTWIGGQPVEEPYILI 351
|
330 340
....*....|....*....|....*....
gi 629679708 322 GQLASISYFTIILVLFPLVSILENKLLKL 350
Cdd:MTH00053 352 GQIASIFYFAYFLILMPLAGYLENKLLKL 380
|
|
| CYTB |
MTH00022 |
cytochrome b; Validated |
2-349 |
3.07e-177 |
|
cytochrome b; Validated
Pssm-ID: 164595 [Multi-domain] Cd Length: 379 Bit Score: 496.53 E-value: 3.07e-177
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 2 WNFGSLLGICLITQIVTGLLLAMHYTADTSLAFESVAHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGLYYGSYLNK 81
Cdd:MTH00022 30 WNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKF 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 82 ETWNVGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWLWGGFSVDNPTLTRFFAIHFLLPFVIA 161
Cdd:MTH00022 110 HVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILA 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 162 GLTLVHLTFLHDTGSNNPLGIPSDCDKIPFHPYYSIKDILGFVLLFIPLATLALFAPNLLGDPENFTPANPLATPPHIKP 241
Cdd:MTH00022 190 FLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQP 269
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 242 EWYFLFAYAILRSIPNKLGGVLALAASVLVLFLIPLLHTSKLRSMTFRPLSQILFWTLVANLLILTWVGSQPVEHPFIII 321
Cdd:MTH00022 270 EWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDFILLTWIGSQVVEEPFILI 349
|
330 340
....*....|....*....|....*...
gi 629679708 322 GQLASISYFTIILVLFPLVSILENKLLK 349
Cdd:MTH00022 350 GQLLSFFYFFYFLVLIPLLGELENQLLF 377
|
|
| CYTB |
MTH00224 |
cytochrome b; Provisional |
1-349 |
2.64e-165 |
|
cytochrome b; Provisional
Pssm-ID: 164767 [Multi-domain] Cd Length: 379 Bit Score: 466.32 E-value: 2.64e-165
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 1 WWNFGSLLGICLITQIVTGLLLAMHYTADTSLAFESVAHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGLYYGSYLN 80
Cdd:MTH00224 31 WWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNL 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 81 KETWNVGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWLWGGFSVDNPTLTRFFAIHFLLPFVI 160
Cdd:MTH00224 111 SETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAI 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 161 AGLTLVHLTFLHDTGSNNPLGIPSDCDKIPFHPYYSIKDILGFVLLFIPLATLALFAPNLLGDPENFTPANPLATPPHIK 240
Cdd:MTH00224 191 MGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIK 270
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 241 PEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLIPLLHTSKLRSMTFRPLSQILFWTLVANLLILTWVGSQPVEHPFII 320
Cdd:MTH00224 271 PEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVTSWAILTWIGGRPVEDPFEG 350
|
330 340
....*....|....*....|....*....
gi 629679708 321 IGQLASISYFTiILVLFPLVSILENKLLK 349
Cdd:MTH00224 351 IGQVFTILYFS-YFIISPAISKLWDDLLN 378
|
|
| CYTB |
MTH00033 |
cytochrome b; Provisional |
1-345 |
4.10e-135 |
|
cytochrome b; Provisional
Pssm-ID: 133672 [Multi-domain] Cd Length: 383 Bit Score: 389.68 E-value: 4.10e-135
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 1 WWNFGSLLGICLITQIVTGLLLAMHYTADTSLAFESVAHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGLYYGSYLN 80
Cdd:MTH00033 27 WWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSR 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 81 KETWNVGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWLWGGFSVDNPTLTRFFAIHFLLPFVI 160
Cdd:MTH00033 107 VLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVL 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 161 AGLTLVHLTFLHDTGSNNPLGIPSDCDKIPFHPYYSIKDILGFVLLFIPLATLALFA--PNLLGDPENFTPANPLATPPH 238
Cdd:MTH00033 187 VGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDPENFIQANPLVTPVH 266
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 239 IKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLIPLLHTSKLRSMTFRPLSQILFWTLVANLLILTWVGSQPV-EHP 317
Cdd:MTH00033 267 IQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILTWIGSAPAgADP 346
|
330 340
....*....|....*....|....*...
gi 629679708 318 FIIIGQLASISYFTIILVLFPLVSILEN 345
Cdd:MTH00033 347 YVLIGRIATIFYFGYFLVLVPLLGYLSN 374
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-344 |
2.07e-131 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 380.68 E-value: 2.07e-131
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 1 WWNFGSLLGICLITQIVTGLLLAMHYTADTSLAFESVAHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGLYYGSY-- 78
Cdd:COG1290 39 SYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYkk 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 79 ---LNketWNVGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWLWGGFSVDNPTLTRFFAIH-F 154
Cdd:COG1290 119 preLN---WIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvL 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 155 LLPFVIAGLTLVHLTFLHDTGSNNPLGI----PSDCDKIPFHPYYSIKDILGFVLLFIPLATLALFAPNllGDPENFTPA 230
Cdd:COG1290 196 LLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPA 273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 231 NPLATPPHIKPEWYFLFAYAILRSIP--NKLGGVLALAASVLVLFLIPLLHTSKLRSMTFRPLSQILFWTLVANLLILTW 308
Cdd:COG1290 274 NPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTI 353
|
330 340 350
....*....|....*....|....*....|....*.
gi 629679708 309 VGSQPVehPFIIIGQLASISYFTIILVLFPLVSILE 344
Cdd:COG1290 354 LGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
|
|
| CYTB |
MTH00086 |
cytochrome b; Provisional |
1-337 |
1.41e-116 |
|
cytochrome b; Provisional
Pssm-ID: 177151 [Multi-domain] Cd Length: 355 Bit Score: 341.53 E-value: 1.41e-116
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 1 WWNFGSLLGICLITQIVTGLLLAMHYTADTSLAFESVAHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGLYYGSYLN 80
Cdd:MTH00086 19 WWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRL 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 81 KETWNVGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWLWGGFSVDNPTLTRFFAIHFLLPFVI 160
Cdd:MTH00086 99 KKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGL 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 161 AGLTLVHLTFLHDTGSNNPLGIPSDCDKIPFHPYYSIKDILGFVLLFIpLATLALFAPNLLGDPENFTPANPLATPPHIK 240
Cdd:MTH00086 179 LVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFWLV-FIIFSLFYPFNLGDPEMFIEADPMMSPVHIV 257
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 241 PEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLIPLLHTSklrSMTFRPLSQILFWTLVANLLILTWVGSQPVEHPFII 320
Cdd:MTH00086 258 PEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNY---TSCLNKLNKFLVFSFIVVNVILSWLGQCLVEYPFLF 334
|
330
....*....|....*..
gi 629679708 321 IGQLASISYFTIILVLF 337
Cdd:MTH00086 335 LSQIFSFIYFFLILLML 351
|
|
| CYTB |
MTH00046 |
cytochrome b; Validated |
1-337 |
4.69e-90 |
|
cytochrome b; Validated
Pssm-ID: 177121 [Multi-domain] Cd Length: 355 Bit Score: 273.78 E-value: 4.69e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 1 WWNFGSLLGICLITQIVTGLLLAMHYTADTSLAFESVAHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGLYYGSYLN 80
Cdd:MTH00046 21 YWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSK 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 81 KETWNVGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWLWGGFSVDNPTLTRFFAIHFLLPFVI 160
Cdd:MTH00046 101 KGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVI 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 161 AGLTLVHLTFLHDTGSNNPLGIPSD-CDKIPFHPYYSIKDILGFVLLFIPLATLALFAPNLLGDPENFTPANPLATPPHI 239
Cdd:MTH00046 181 LGLMVVHLFYLHKSGSSNPLFSSNGySDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSI 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 240 KPEWYFLFAYAILRSIPNKLGGvLALAASVLVLFLIPLLHTSKLRSMtfrpLSQILFWTLVANLLILTWVGSQPVEHPFI 319
Cdd:MTH00046 261 KPEWYFLAFYAMLRSINSKIGG-LVLVLSFLFFLWVPTFNGSSVYSV----WRQVNFWLIVSLFFSLSYLGGCHPEYPYL 335
|
330
....*....|....*...
gi 629679708 320 IIGQLASISyFTIILVLF 337
Cdd:MTH00046 336 LISQLFSVL-MVLLLFIF 352
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-177 |
1.26e-84 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 254.60 E-value: 1.26e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 1 WWNFGSLLGICLITQIVTGLLLAMHYTADTSLAFESVAHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGLYYGSYLN 80
Cdd:cd00284 22 WWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKK 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 81 --KETWNVGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWLWGGFSVDNPTLTRFFAIHFLLPF 158
Cdd:cd00284 102 prELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPF 181
|
170
....*....|....*....
gi 629679708 159 VIAGLTLVHLTFLHDTGSN 177
Cdd:cd00284 182 IIAVIVILHLLFLHEQGSS 200
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
1-175 |
1.37e-73 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 226.11 E-value: 1.37e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 1 WWNFGSLLGICLITQIVTGLLLAMHYTADTSLAFESVAHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGLYYG--SY 78
Cdd:pfam00033 13 WYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSY 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 79 LNKETWNVGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWLWGGFSVDNPTLTRFFAIHFLLPF 158
Cdd:pfam00033 93 PRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPF 172
|
170
....*....|....*..
gi 629679708 159 VIAGLTLVHLTFLHDTG 175
Cdd:pfam00033 173 ILAILMLLHLLFLHETG 189
|
|
| cytochrome_b_C |
cd00290 |
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
178-325 |
5.48e-58 |
|
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 184.39 E-value: 5.48e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 178 NPLGIPSDCDKIPFHPYYSIKDILGFVLLFIPLATLALFAPNLLGDPENFTPANPLATPPHIKPEWYFLFAYAILRSIPN 257
Cdd:cd00290 1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 629679708 258 KLGGVLALAASVLVLFLIPLLHTSKLRSmTFRPLSQILFWTLVANLLILTWVGSQPVEHPFIIIGQLA 325
Cdd:cd00290 81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
|
|
| Cytochrom_B_C |
pfam00032 |
Cytochrome b(C-terminal)/b6/petD; |
229-329 |
2.87e-48 |
|
Cytochrome b(C-terminal)/b6/petD;
Pssm-ID: 459640 [Multi-domain] Cd Length: 101 Bit Score: 158.03 E-value: 2.87e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 229 PANPLATPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLIPLLHTSKLRSMTFRPLSQILFWTLVANLLILTW 308
Cdd:pfam00032 1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80
|
90 100
....*....|....*....|.
gi 629679708 309 VGSQPVEHPFIIIGQLASISY 329
Cdd:pfam00032 81 LGKQPPTGPYTLLGQIATVYY 101
|
|
| Cytochrom_B_N_2 |
pfam13631 |
Cytochrome b(N-terminal)/b6/petB; |
59-224 |
2.66e-42 |
|
Cytochrome b(N-terminal)/b6/petB;
Pssm-ID: 433364 Cd Length: 169 Bit Score: 144.69 E-value: 2.66e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 59 SFFFICIYFHIGRGLYYGSYLNKE--TWNVGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWLW 136
Cdd:pfam13631 1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 137 GGFSVDNPTLTRFFAIHF-LLPFVIAGLTLVHLTFLHDTGSNNPLGIPSDCDKIPFHPYYSIKDILGFVLLFIPLATLAL 215
Cdd:pfam13631 81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160
|
....*....
gi 629679708 216 FAPNLLGDP 224
Cdd:pfam13631 161 INPIWLGGP 169
|
|
| PRK03735 |
PRK03735 |
cytochrome b6; Provisional |
4-180 |
2.32e-36 |
|
cytochrome b6; Provisional
Pssm-ID: 179639 Cd Length: 223 Bit Score: 130.99 E-value: 2.32e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 4 FGSLLGICLITQIVTGLLLAMHYTADTSLAFESVAHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGLYYGSYLNKE- 82
Cdd:PRK03735 44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 83 -TWNVGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWLWGGFSVDNPTLTRFFAIH-FLLPFVI 160
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203
|
170 180
....*....|....*....|
gi 629679708 161 AGLTLVHLTFLHDTGSNNPL 180
Cdd:PRK03735 204 AVLMLAHFLMIRKQGISGPL 223
|
|
| petB |
CHL00070 |
cytochrome b6 |
4-180 |
1.90e-30 |
|
cytochrome b6
Pssm-ID: 177009 Cd Length: 215 Bit Score: 115.20 E-value: 1.90e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 4 FGSLLGICLITQIVTGLLLAMHYTADTSLAFESVAHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGLYYGSYLNKE- 82
Cdd:CHL00070 36 LGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRe 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 83 -TWNVGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWLWGGFSVDNPTLTRFFAIH-FLLPFVI 160
Cdd:CHL00070 116 lTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLT 195
|
170 180
....*....|....*....|
gi 629679708 161 AGLTLVHLTFLHDTGSNNPL 180
Cdd:CHL00070 196 AVFMLMHFLMIRKQGISGPL 215
|
|
| petD |
CHL00058 |
cytochrome b6/f complex subunit IV |
200-301 |
3.70e-13 |
|
cytochrome b6/f complex subunit IV
Pssm-ID: 176998 Cd Length: 160 Bit Score: 66.56 E-value: 3.70e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 200 ILGFVLLFIPLATLAlfaPNLLGDPenftpANPLATPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLIPLL- 278
Cdd:CHL00058 44 ILGTIACNVGLAVLE---PSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLe 115
|
90 100
....*....|....*....|....*
gi 629679708 279 HTSKLRSMTFRPLSQI--LFWTLVA 301
Cdd:CHL00058 116 NVNKFQNPFRRPVATTvfLIGTAVA 140
|
|
| PetD |
COG5679 |
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ... |
200-296 |
6.01e-13 |
|
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];
Pssm-ID: 444393 [Multi-domain] Cd Length: 161 Bit Score: 65.97 E-value: 6.01e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 200 ILGFVLLFIPLATLAlfaPNLLGDPenftpANPLATPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLIPLLH 279
Cdd:COG5679 45 ILGTIALCIGLAVLD---PAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIE 116
|
90
....*....|....*...
gi 629679708 280 T-SKLRSMTFRPLSQILF 296
Cdd:COG5679 117 NvNKFQNPFRRPVATAVF 134
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
210-301 |
1.59e-11 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 61.74 E-value: 1.59e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679708 210 LATLALFAPNLLGDPenftpANPLATPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLIPLLHT-SKLRSMTF 288
Cdd:TIGR01156 51 VVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENvNKFQNPFR 125
|
90
....*....|....*
gi 629679708 289 RPLSQI--LFWTLVA 301
Cdd:TIGR01156 126 RPVATTvfLFGTVVA 140
|
|
| |
