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Conserved domains on  [gi|629679728|gb|AHY88143|]
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cytochrome b, partial (mitochondrion) [Yuhina flavicollis]

Protein Classification

cytochrome b( domain architecture ID 11475906)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-341 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 670.07  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728   1 ICLITQIVTGLLLAMHYTADTNLAFASVAHMCRDVQFGWLIRNLHANGASFFFICIYFHIGRGFYYGSYLNKETWNVGVV 80
Cdd:MTH00119  40 LCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVI 119

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728  81 LLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLT 160
Cdd:MTH00119 120 LLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLL 199

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728 161 LLHETGSNNPLGIPSDCDKIPFHPYYSIKDILGFALMFTSLAAVALFAPNSLGDPENFTPANPLATPPHIKPEWYFLFAY 240
Cdd:MTH00119 200 FLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAY 279

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728 241 AILRSIPNKLGGVLALAASVLVLFLIPLLHTSKLRSMTFRPLSQILFWTLVANLLILTWVGSQPVEHPFIIIGQLASFTY 320
Cdd:MTH00119 280 AILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILY 359

                        330       340
                 ....*....|....*....|.
gi 629679728 321 FTIILVLFPLVSILENKLLKL 341
Cdd:MTH00119 360 FTILLILFPLLGALENKMLNY 380
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-341 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 670.07  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728   1 ICLITQIVTGLLLAMHYTADTNLAFASVAHMCRDVQFGWLIRNLHANGASFFFICIYFHIGRGFYYGSYLNKETWNVGVV 80
Cdd:MTH00119  40 LCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVI 119

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728  81 LLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLT 160
Cdd:MTH00119 120 LLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLL 199

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728 161 LLHETGSNNPLGIPSDCDKIPFHPYYSIKDILGFALMFTSLAAVALFAPNSLGDPENFTPANPLATPPHIKPEWYFLFAY 240
Cdd:MTH00119 200 FLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAY 279

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728 241 AILRSIPNKLGGVLALAASVLVLFLIPLLHTSKLRSMTFRPLSQILFWTLVANLLILTWVGSQPVEHPFIIIGQLASFTY 320
Cdd:MTH00119 280 AILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILY 359

                        330       340
                 ....*....|....*....|.
gi 629679728 321 FTIILVLFPLVSILENKLLKL 341
Cdd:MTH00119 360 FTILLILFPLLGALENKMLNY 380
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-335 6.56e-124

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 361.03  E-value: 6.56e-124
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728   1 ICLITQIVTGLLLAMHYTADTNLAFASVAHMCRDVQFGWLIRNLHANGASFFFICIYFHIGRGFYYGSY-----LNketW 75
Cdd:COG1290   48 YSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYkkpreLN---W 124

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728  76 NVGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFVIAGL 154
Cdd:COG1290  125 IIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLAL 204

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728 155 TLVHLTLLHETGSNNPLGI----PSDCDKIPFHPYYSIKDILGFALMFTSLAAVALFAPNslGDPENFTPANPLATPPHI 230
Cdd:COG1290  205 VVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHI 282

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728 231 KPEWYFLFAYAILRSIP--NKLGGVLALAASVLVLFLIPLLHTSKLRSMTFRPLSQILFWTLVANLLILTWVGSQPVehP 308
Cdd:COG1290  283 QPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP--I 360

                        330       340
                 ....*....|....*....|....*..
gi 629679728 309 FIIIGQLASFTYFTIILVLFPLVSILE 335
Cdd:COG1290  361 ATLLGSINTVTYFAFFLIVLPILAFIE 387
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-168 3.77e-74

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 227.64  E-value: 3.77e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728   1 ICLITQIVTGLLLAMHYTADTNLAFASVAHMCRDVQFGWLIRNLHANGASFFFICIYFHIGRGFYYGSYLN--KETWNVG 78
Cdd:cd00284   31 TCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKKprELTWVIG 110

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728  79 VVLLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVH 158
Cdd:cd00284  111 VILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILH 190

                        170
                 ....*....|
gi 629679728 159 LTLLHETGSN 168
Cdd:cd00284  191 LLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
2-166 1.06e-64

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 203.00  E-value: 1.06e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728    2 CLITQIVTGLLLAMHYTADTNLAFASVAHMCRDVQFGWLIRNLHANGASFFFICIYFHIGRGFYYG--SYLNKETWNVGV 79
Cdd:pfam00033  23 CLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGV 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728   80 VLLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHL 159
Cdd:pfam00033 103 ILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHL 182


                  ....*..
gi 629679728  160 TLLHETG 166
Cdd:pfam00033 183 LFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 198-292 1.89e-11

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 61.74  E-value: 1.89e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728  198 FTSLAAVALFAPNSLGDPenftpANPLATPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLIPLLHT-SKLRS 276
Cdd:TIGR01156  48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENvNKFQN 122

                          90
                  ....*....|....*...
gi 629679728  277 MTFRPLSQI--LFWTLVA 292
Cdd:TIGR01156 123 PFRRPVATTvfLFGTVVA 140
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-341 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 670.07  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728   1 ICLITQIVTGLLLAMHYTADTNLAFASVAHMCRDVQFGWLIRNLHANGASFFFICIYFHIGRGFYYGSYLNKETWNVGVV 80
Cdd:MTH00119  40 LCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVI 119

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728  81 LLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLT 160
Cdd:MTH00119 120 LLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLL 199

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728 161 LLHETGSNNPLGIPSDCDKIPFHPYYSIKDILGFALMFTSLAAVALFAPNSLGDPENFTPANPLATPPHIKPEWYFLFAY 240
Cdd:MTH00119 200 FLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAY 279

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728 241 AILRSIPNKLGGVLALAASVLVLFLIPLLHTSKLRSMTFRPLSQILFWTLVANLLILTWVGSQPVEHPFIIIGQLASFTY 320
Cdd:MTH00119 280 AILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILY 359

                        330       340
                 ....*....|....*....|.
gi 629679728 321 FTIILVLFPLVSILENKLLKL 341
Cdd:MTH00119 360 FTILLILFPLLGALENKMLNY 380
CYTB MTH00131
cytochrome b; Provisional
 1-340 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 617.43  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728   1 ICLITQIVTGLLLAMHYTADTNLAFASVAHMCRDVQFGWLIRNLHANGASFFFICIYFHIGRGFYYGSYLNKETWNVGVV 80
Cdd:MTH00131  39 LCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVV 118

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728  81 LLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLT 160
Cdd:MTH00131 119 LLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLL 198

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728 161 LLHETGSNNPLGIPSDCDKIPFHPYYSIKDILGFALMFTSLAAVALFAPNSLGDPENFTPANPLATPPHIKPEWYFLFAY 240
Cdd:MTH00131 199 FLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAY 278

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728 241 AILRSIPNKLGGVLALAASVLVLFLIPLLHTSKLRSMTFRPLSQILFWTLVANLLILTWVGSQPVEHPFIIIGQLASFTY 320
Cdd:MTH00131 279 AILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLY 358

                        330       340
                 ....*....|....*....|
gi 629679728 321 FTIILVLFPLVSILENKLLK 340
Cdd:MTH00131 359 FSLFLVLMPLAGWLENKALE 378
CYTB MTH00100
cytochrome b; Provisional
 1-340 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 613.18  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728   1 ICLITQIVTGLLLAMHYTADTNLAFASVAHMCRDVQFGWLIRNLHANGASFFFICIYFHIGRGFYYGSYLNKETWNVGVV 80
Cdd:MTH00100  39 ICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGII 118

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728  81 LLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLT 160
Cdd:MTH00100 119 LLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLL 198

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728 161 LLHETGSNNPLGIPSDCDKIPFHPYYSIKDILGFALMFTSLAAVALFAPNSLGDPENFTPANPLATPPHIKPEWYFLFAY 240
Cdd:MTH00100 199 FLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAY 278

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728 241 AILRSIPNKLGGVLALAASVLVLFLIPLLHTSKLRSMTFRPLSQILFWTLVANLLILTWVGSQPVEHPFIIIGQLASFTY 320
Cdd:MTH00100 279 AILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILY 358

                        330       340
                 ....*....|....*....|
gi 629679728 321 FTIILVLFPLVSILENKLLK 340
Cdd:MTH00100 359 FLIILILMPIASLIENNLLK 378
CYTB MTH00074
cytochrome b; Provisional
 1-341 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 595.51  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728   1 ICLITQIVTGLLLAMHYTADTNLAFASVAHMCRDVQFGWLIRNLHANGASFFFICIYFHIGRGFYYGSYLNKETWNVGVV 80
Cdd:MTH00074  40 VCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVI 119

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728  81 LLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLT 160
Cdd:MTH00074 120 LLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLL 199

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728 161 LLHETGSNNPLGIPSDCDKIPFHPYYSIKDILGFALMFTSLAAVALFAPNSLGDPENFTPANPLATPPHIKPEWYFLFAY 240
Cdd:MTH00074 200 FLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAY 279

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728 241 AILRSIPNKLGGVLALAASVLVLFLIPLLHTSKLRSMTFRPLSQILFWTLVANLLILTWVGSQPVEHPFIIIGQLASFTY 320
Cdd:MTH00074 280 AILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILY 359

                        330       340
                 ....*....|....*....|.
gi 629679728 321 FTIILVLFPLVSILENKLLKL 341
Cdd:MTH00074 360 FLLFIIIIPLTGWLENKLLKW 380
CYTB MTH00191
cytochrome b; Provisional
 1-330 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 570.32  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728   1 ICLITQIVTGLLLAMHYTADTNLAFASVAHMCRDVQFGWLIRNLHANGASFFFICIYFHIGRGFYYGSYLNKETWNVGVV 80
Cdd:MTH00191  36 LCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVI 115

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728  81 LLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLT 160
Cdd:MTH00191 116 LLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLL 195

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728 161 LLHETGSNNPLGIPSDCDKIPFHPYYSIKDILGFALMFTSLAAVALFAPNSLGDPENFTPANPLATPPHIKPEWYFLFAY 240
Cdd:MTH00191 196 FLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAY 275

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728 241 AILRSIPNKLGGVLALAASVLVLFLIPLLHTSKLRSMTFRPLSQILFWTLVANLLILTWVGSQPVEHPFIIIGQLASFTY 320
Cdd:MTH00191 276 AILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANFILLTWLGGQPVEDPFILLGQISSFLY 355

                        330
                 ....*....|
gi 629679728 321 FTIILVLFPL 330
Cdd:MTH00191 356 FFLFLLLFPL 365
CYTB MTH00034
cytochrome b; Validated
 1-339 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 548.92  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728   1 ICLITQIVTGLLLAMHYTADTNLAFASVAHMCRDVQFGWLIRNLHANGASFFFICIYFHIGRGFYYGSYLNKETWNVGVV 80
Cdd:MTH00034  39 LCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVI 118

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728  81 LLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLT 160
Cdd:MTH00034 119 LFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLL 198

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728 161 LLHETGSNNPLGIPSDCDKIPFHPYYSIKDILGFALMFTSLAAVALFAPNSLGDPENFTPANPLATPPHIKPEWYFLFAY 240
Cdd:MTH00034 199 FLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAY 278

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728 241 AILRSIPNKLGGVLALAASVLVLFLIPLLHTSKLRSMTFRPLSQILFWTLVANLLILTWVGSQPVEHPFIIIGQLASFTY 320
Cdd:MTH00034 279 AILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIATFFILTWIGSQPVEYPFILLGQVASVLY 358

                        330
                 ....*....|....*....
gi 629679728 321 FTIILVLFPLVSILENKLL 339
Cdd:MTH00034 359 FSLFLFFFPLISYLENKLI 377
CYTB MTH00156
cytochrome b; Provisional
 1-328 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 547.84  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728   1 ICLITQIVTGLLLAMHYTADTNLAFASVAHMCRDVQFGWLIRNLHANGASFFFICIYFHIGRGFYYGSYLNKETWNVGVV 80
Cdd:MTH00156  29 LCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVI 108

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728  81 LLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLT 160
Cdd:MTH00156 109 ILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLL 188

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728 161 LLHETGSNNPLGIPSDCDKIPFHPYYSIKDILGFALMFTSLAAVALFAPNSLGDPENFTPANPLATPPHIKPEWYFLFAY 240
Cdd:MTH00156 189 FLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAY 268

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728 241 AILRSIPNKLGGVLALAASVLVLFLIPLLHTSKLRSMTFRPLSQILFWTLVANLLILTWVGSQPVEHPFIIIGQLASFTY 320
Cdd:MTH00156 269 AILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQILTILY 348


                 ....*...
gi 629679728 321 FTIILVLF 328
Cdd:MTH00156 349 FLYFIINP 356
CYTB MTH00145
cytochrome b; Provisional
 1-339 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 547.20  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728   1 ICLITQIVTGLLLAMHYTADTNLAFASVAHMCRDVQFGWLIRNLHANGASFFFICIYFHIGRGFYYGSYLNKETWNVGVV 80
Cdd:MTH00145  40 LCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVT 119

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728  81 LLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLT 160
Cdd:MTH00145 120 LLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLL 199

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728 161 LLHETGSNNPLGIPSDCDKIPFHPYYSIKDILGFALMFTSLAAVALFAPNSLGDPENFTPANPLATPPHIKPEWYFLFAY 240
Cdd:MTH00145 200 FLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAY 279

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728 241 AILRSIPNKLGGVLALAASVLVLFLIPLLHTSKLRSMTFRPLSQILFWTLVANLLILTWVGSQPVEHPFIIIGQLASFTY 320
Cdd:MTH00145 280 AILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLY 359

                        330
                 ....*....|....*....
gi 629679728 321 FTIILVLfPLVSILENKLL 339
Cdd:MTH00145 360 FLFFLIL-PLVQKLWDNIL 377
CYTB MTH00016
cytochrome b; Validated
 1-340 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 515.77  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728   1 ICLITQIVTGLLLAMHYTADTNLAFASVAHMCRDVQFGWLIRNLHANGASFFFICIYFHIGRGFYYGSYLNKETWNVGVV 80
Cdd:MTH00016  40 LCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVI 119

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728  81 LLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLT 160
Cdd:MTH00016 120 LLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLL 199

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728 161 LLHETGSNNPLGIPSDCDKIPFHPYYSIKDILGFALMFTSLAAVALFAPNSLGDPENFTPANPLATPPHIKPEWYFLFAY 240
Cdd:MTH00016 200 FLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAY 279

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728 241 AILRSIPNKLGGVLALAASVLVLFLIPLLHTSKLRSMTFRPLSQILFWTLVANLLILTWVGSQPVEHPFIIIGQLASFTY 320
Cdd:MTH00016 280 AILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFY 359

                        330       340
                 ....*....|....*....|
gi 629679728 321 FTiILVLFPLVSILENKLLK 340
Cdd:MTH00016 360 FF-YFMINPLLMKLWDKLLK 378
CYTB MTH00022
cytochrome b; Validated
 1-340 4.57e-167

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 470.34  E-value: 4.57e-167
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728   1 ICLITQIVTGLLLAMHYTADTNLAFASVAHMCRDVQFGWLIRNLHANGASFFFICIYFHIGRGFYYGSYLNKETWNVGVV 80
Cdd:MTH00022  38 LCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVV 117

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728  81 LLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLT 160
Cdd:MTH00022 118 IFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLI 197

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728 161 LLHETGSNNPLGIPSDCDKIPFHPYYSIKDILGFALMFTSLAAVALFAPNSLGDPENFTPANPLATPPHIKPEWYFLFAY 240
Cdd:MTH00022 198 YLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAY 277

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728 241 AILRSIPNKLGGVLALAASVLVLFLIPLLHTSKLRSMTFRPLSQILFWTLVANLLILTWVGSQPVEHPFIIIGQLASFTY 320
Cdd:MTH00022 278 AILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFY 357

                        330       340
                 ....*....|....*....|
gi 629679728 321 FTIILVLFPLVSILENKLLK 340
Cdd:MTH00022 358 FFYFLVLIPLLGELENQLLF 377
CYTB MTH00053
cytochrome b; Provisional
 1-341 7.66e-167

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 469.96  E-value: 7.66e-167
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728   1 ICLITQIVTGLLLAMHYTADTNLAFASVAHMCRDVQFGWLIRNLHANGASFFFICIYFHIGRGFYYGSYLNKETWNVGVV 80
Cdd:MTH00053  40 FCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVL 119

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728  81 LLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLT 160
Cdd:MTH00053 120 IFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLI 199

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728 161 LLHETGSNNPLGIPSDCDKIPFHPYYSIKDILGFALMFTSLAAVALFAPNSLGDPENFTPANPLATPPHIKPEWYFLFAY 240
Cdd:MTH00053 200 ALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAY 279

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728 241 AILRSIPNKLGGVLALAASVLVLFLIPLLHTSKLRSMTFRPLSQILFWTLVANLLILTWVGSQPVEHPFIIIGQLASFTY 320
Cdd:MTH00053 280 AILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFY 359

                        330       340
                 ....*....|....*....|.
gi 629679728 321 FTIILVLFPLVSILENKLLKL 341
Cdd:MTH00053 360 FAYFLILMPLAGYLENKLLKL 380
CYTB MTH00224
cytochrome b; Provisional
 1-340 8.76e-154

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 436.66  E-value: 8.76e-154
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728   1 ICLITQIVTGLLLAMHYTADTNLAFASVAHMCRDVQFGWLIRNLHANGASFFFICIYFHIGRGFYYGSYLNKETWNVGVV 80
Cdd:MTH00224  40 LCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVI 119

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728  81 LLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLT 160
Cdd:MTH00224 120 LFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIM 199

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728 161 LLHETGSNNPLGIPSDCDKIPFHPYYSIKDILGFALMFTSLAAVALFAPNSLGDPENFTPANPLATPPHIKPEWYFLFAY 240
Cdd:MTH00224 200 FLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMY 279

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728 241 AILRSIPNKLGGVLALAASVLVLFLIPLLHTSKLRSMTFRPLSQILFWTLVANLLILTWVGSQPVEHPFIIIGQLASFTY 320
Cdd:MTH00224 280 AILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILY 359

                        330       340
                 ....*....|....*....|
gi 629679728 321 FTiILVLFPLVSILENKLLK 340
Cdd:MTH00224 360 FS-YFIISPAISKLWDDLLN 378
CYTB MTH00033
cytochrome b; Provisional
 1-336 1.45e-124

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 362.72  E-value: 1.45e-124
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728   1 ICLITQIVTGLLLAMHYTADTNLAFASVAHMCRDVQFGWLIRNLHANGASFFFICIYFHIGRGFYYGSYLNKETWNVGVV 80
Cdd:MTH00033  36 LCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVL 115

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728  81 LLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLT 160
Cdd:MTH00033 116 IFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLL 195

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728 161 LLHETGSNNPLGIPSDCDKIPFHPYYSIKDILGFALMFTSLAAVALFA--PNSLGDPENFTPANPLATPPHIKPEWYFLF 238
Cdd:MTH00033 196 TLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDPENFIQANPLVTPVHIQPEWYFLF 275

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728 239 AYAILRSIPNKLGGVLALAASVLVLFLIPLLHTSKLRSMTFRPLSQILFWTLVANLLILTWVGSQPV-EHPFIIIGQLAS 317
Cdd:MTH00033 276 AYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILTWIGSAPAgADPYVLIGRIAT 355

                        330
                 ....*....|....*....
gi 629679728 318 FTYFTIILVLFPLVSILEN 336
Cdd:MTH00033 356 IFYFGYFLVLVPLLGYLSN 374
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-335 6.56e-124

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 361.03  E-value: 6.56e-124
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728   1 ICLITQIVTGLLLAMHYTADTNLAFASVAHMCRDVQFGWLIRNLHANGASFFFICIYFHIGRGFYYGSY-----LNketW 75
Cdd:COG1290   48 YSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYkkpreLN---W 124

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728  76 NVGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFVIAGL 154
Cdd:COG1290  125 IIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLAL 204

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728 155 TLVHLTLLHETGSNNPLGI----PSDCDKIPFHPYYSIKDILGFALMFTSLAAVALFAPNslGDPENFTPANPLATPPHI 230
Cdd:COG1290  205 VVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHI 282

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728 231 KPEWYFLFAYAILRSIP--NKLGGVLALAASVLVLFLIPLLHTSKLRSMTFRPLSQILFWTLVANLLILTWVGSQPVehP 308
Cdd:COG1290  283 QPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP--I 360

                        330       340
                 ....*....|....*....|....*..
gi 629679728 309 FIIIGQLASFTYFTIILVLFPLVSILE 335
Cdd:COG1290  361 ATLLGSINTVTYFAFFLIVLPILAFIE 387
CYTB MTH00086
cytochrome b; Provisional
 3-328 2.33e-103

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 307.64  E-value: 2.33e-103
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728   3 LITQIVTGLLLAMHYTADTNLAFASVAHMCRDVQFGWLIRNLHANGASFFFICIYFHIGRGFYYGSYLNKETWNVGVVLL 82
Cdd:MTH00086  30 LVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISGLTIY 109

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728  83 LALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTLL 162
Cdd:MTH00086 110 LLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFL 189

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728 163 HETGSNNPLGIPSDCDKIPFHPYYSIKDILGFaLMFTSLAAVALFAPNSLGDPENFTPANPLATPPHIKPEWYFLFAYAI 242
Cdd:MTH00086 190 HSTGSTSSLYCHGDYDKICFGPEYWNKDAYNI-IFWLVFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAI 268

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728 243 LRSIPNKLGGVLALAASVLVLFLIPLLHTSklrSMTFRPLSQILFWTLVANLLILTWVGSQPVEHPFIIIGQLASFTYFT 322
Cdd:MTH00086 269 LRAIPNKVLGVIALLMSIVVFYFFIFVNNY---TSCLNKLNKFLVFSFIVVNVILSWLGQCLVEYPFLFLSQIFSFIYFF 345


                 ....*.
gi 629679728 323 IILVLF 328
Cdd:MTH00086 346 LILLML 351
CYTB MTH00046
cytochrome b; Validated
 3-318 5.41e-81

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 250.29  E-value: 5.41e-81
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728   3 LITQIVTGLLLAMHYTADTNLAFASVAHMCRDVQFGWLIRNLHANGASFFFICIYFHIGRGFYYGSYLNKETWNVGVVLL 82
Cdd:MTH00046  32 MVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVGFILY 111

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728  83 LALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTLL 162
Cdd:MTH00046 112 LLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYL 191

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728 163 HETGSNNPLGIPSD-CDKIPFHPYYSIKDILGFALMFTSLAAVALFAPNSLGDPENFTPANPLATPPHIKPEWYFLFAYA 241
Cdd:MTH00046 192 HKSGSSNPLFSSNGySDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYA 271

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 629679728 242 ILRSIPNKLGGvLALAASVLVLFLIPLLHTSKLRSMtfrpLSQILFWTLVANLLILTWVGSQPVEHPFIIIGQLASF 318
Cdd:MTH00046 272 MLRSINSKIGG-LVLVLSFLFFLWVPTFNGSSVYSV----WRQVNFWLIVSLFFSLSYLGGCHPEYPYLLISQLFSV 343
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-168 3.77e-74

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 227.64  E-value: 3.77e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728   1 ICLITQIVTGLLLAMHYTADTNLAFASVAHMCRDVQFGWLIRNLHANGASFFFICIYFHIGRGFYYGSYLN--KETWNVG 78
Cdd:cd00284   31 TCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKKprELTWVIG 110

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728  79 VVLLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVH 158
Cdd:cd00284  111 VILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILH 190

                        170
                 ....*....|
gi 629679728 159 LTLLHETGSN 168
Cdd:cd00284  191 LLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
2-166 1.06e-64

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 203.00  E-value: 1.06e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728    2 CLITQIVTGLLLAMHYTADTNLAFASVAHMCRDVQFGWLIRNLHANGASFFFICIYFHIGRGFYYG--SYLNKETWNVGV 79
Cdd:pfam00033  23 CLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGV 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728   80 VLLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHL 159
Cdd:pfam00033 103 ILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHL 182


                  ....*..
gi 629679728  160 TLLHETG 166
Cdd:pfam00033 183 LFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 169-316 8.89e-57

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 181.30  E-value: 8.89e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728 169 NPLGIPSDCDKIPFHPYYSIKDILGFALMFTSLAAVALFAPNSLGDPENFTPANPLATPPHIKPEWYFLFAYAILRSIPN 248
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 629679728 249 KLGGVLALAASVLVLFLIPLLHTSKLRSmTFRPLSQILFWTLVANLLILTWVGSQPVEHPFIIIGQLA 316
Cdd:cd00290   81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
220-320 9.45e-49

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 158.80  E-value: 9.45e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728  220 PANPLATPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLIPLLHTSKLRSMTFRPLSQILFWTLVANLLILTW 299
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 629679728  300 VGSQPVEHPFIIIGQLASFTY 320
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
50-215 1.69e-39

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 137.37  E-value: 1.69e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728   50 SFFFICIYFHIGRGFYYGSYLNKE--TWNVGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAW 127
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728  128 GGFSVDNPTLTRFFALHF-LLPFVIAGLTLVHLTLLHETGSNNPLGIPSDCDKIPFHPYYSIKDILGFALMFTSLAAVAL 206
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 629679728  207 FAPNSLGDP 215
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 1-171 7.90e-33

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 121.36  E-value: 7.90e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728   1 ICLITQIVTGLLLAMHYTADTNLAFASVAHMCRDVQFGWLIRNLHANGASFFFICIYFHIGRGFYYGSYLNKE--TWNVG 78
Cdd:PRK03735  50 FCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRelNWVVG 129

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728  79 VVLLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFVIAGLTLV 157
Cdd:PRK03735 130 VLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLA 209

                        170
                 ....*....|....
gi 629679728 158 HLTLLHETGSNNPL 171
Cdd:PRK03735 210 HFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 1-152 9.39e-29

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 110.58  E-value: 9.39e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728   1 ICLITQIVTGLLLAMHYTADTNLAFASVAHMCRDVQFGWLIRNLHANGASFFFICIYFHIGRGFYYGSYLNKE--TWNVG 78
Cdd:CHL00070  42 TCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRelTWVTG 121

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 629679728  79 VVLLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFVIA 152
Cdd:CHL00070 122 VVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTA 196
petD CHL00058
cytochrome b6/f complex subunit IV
 191-292 5.92e-13

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 65.79  E-value: 5.92e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728 191 ILGfalMFTSLAAVALFAPNSLGDPenftpANPLATPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLIPLL- 269
Cdd:CHL00058  44 ILG---TIACNVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLe 115

                         90       100
                 ....*....|....*....|....*
gi 629679728 270 HTSKLRSMTFRPLSQI--LFWTLVA 292
Cdd:CHL00058 116 NVNKFQNPFRRPVATTvfLIGTAVA 140
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 203-301 4.89e-12

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 63.27  E-value: 4.89e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728 203 AVALFAPNSLGDPenftpANPLATPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLIPLLHT-SKLRSMTFRP 281
Cdd:COG5679   54 GLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENvNKFQNPFRRP 128

                         90       100
                 ....*....|....*....|
gi 629679728 282 LSQILFwtLVANLLILtWVG 301
Cdd:COG5679  129 VATAVF--LFGTLVTL-WLG 145
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 198-292 1.89e-11

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 61.74  E-value: 1.89e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679728  198 FTSLAAVALFAPNSLGDPenftpANPLATPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLIPLLHT-SKLRS 276
Cdd:TIGR01156  48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENvNKFQN 122

                          90
                  ....*....|....*...
gi 629679728  277 MTFRPLSQI--LFWTLVA 292
Cdd:TIGR01156 123 PFRRPVATTvfLFGTVVA 140
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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