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Conserved domains on  [gi|633366278|gb|AHZ56763|]
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xylanase [Bacillus subtilis]

Protein Classification

glycoside hydrolase family 11 protein( domain architecture ID 10452271)

glycoside hydrolase family 11 protein such as endo-1,4-beta-xylanase, which catalyzes the endohydrolysis of (1->4)-beta-D-xylosidic linkages in xylans

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Glyco_hydro_11 pfam00457
Glycosyl hydrolases family 11;
30-209 4.17e-88

Glycosyl hydrolases family 11;


:

Pssm-ID: 459818  Cd Length: 175  Bit Score: 257.04  E-value: 4.17e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633366278   30 STDYWQNWTDGGGIVNAVNGSGGNYSVNWSNTGNFVVGKGWTTGSPfRTINYNaGVWAPNGNGYLTLYGWTRSPLIEYYV 109
Cdd:pfam00457   1 NGYYYSFWTDGGGNVTYTNGAGGSYSVTWSNGGNFVGGKGWNPGSN-RTINYS-GTFNPSGNSYLAVYGWTTNPLVEYYI 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633366278  110 VDSWGTYRP--TGTYKGTVKSDGGTYDIYTTTRYNAPSIDGdRTTFTQYWSVRQTKRPTGsnaTITFSNHVNAWKSHGMN 187
Cdd:pfam00457  79 VESYGTYNPssGGTYKGTVTSDGGTYDIYTTTRVNQPSIDG-TATFQQYWSVRQSKRTSG---TITTANHFNAWASLGLN 154

                         170       180
                  ....*....|....*....|..
gi 633366278  188 LGSnWAYQVMATEGYQSSGSSN 209
Cdd:pfam00457 155 LGT-HNYQIVATEGYQSSGSAS 175
 
Name Accession Description Interval E-value
Glyco_hydro_11 pfam00457
Glycosyl hydrolases family 11;
30-209 4.17e-88

Glycosyl hydrolases family 11;


Pssm-ID: 459818  Cd Length: 175  Bit Score: 257.04  E-value: 4.17e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633366278   30 STDYWQNWTDGGGIVNAVNGSGGNYSVNWSNTGNFVVGKGWTTGSPfRTINYNaGVWAPNGNGYLTLYGWTRSPLIEYYV 109
Cdd:pfam00457   1 NGYYYSFWTDGGGNVTYTNGAGGSYSVTWSNGGNFVGGKGWNPGSN-RTINYS-GTFNPSGNSYLAVYGWTTNPLVEYYI 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633366278  110 VDSWGTYRP--TGTYKGTVKSDGGTYDIYTTTRYNAPSIDGdRTTFTQYWSVRQTKRPTGsnaTITFSNHVNAWKSHGMN 187
Cdd:pfam00457  79 VESYGTYNPssGGTYKGTVTSDGGTYDIYTTTRVNQPSIDG-TATFQQYWSVRQSKRTSG---TITTANHFNAWASLGLN 154

                         170       180
                  ....*....|....*....|..
gi 633366278  188 LGSnWAYQVMATEGYQSSGSSN 209
Cdd:pfam00457 155 LGT-HNYQIVATEGYQSSGSAS 175
PRK06215 PRK06215
hypothetical protein; Provisional
 1-154 1.70e-03

hypothetical protein; Provisional


Pssm-ID: 235746  Cd Length: 238  Bit Score: 38.23  E-value: 1.70e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633366278   1 MFKFKKNFLVGLSAALMSISLFSATASAA---STDYWQNWTDGG-GIVNAVNGSGGNYSVNWSNTGN------------- 63
Cdd:PRK06215   8 RMRRSIRLLVAALALAATVALATGPAQAAtwsSSDQWGTWSNGGyTLYNDVWGSGAGPQTIWANSYSnwgvwanhpntgg 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633366278  64 --------FVVGKgwtTGSPFRTINYNAGVWAPNGNGYLTLYG-WTRSPLIEYYV-VDSWGTYRPTGTYKGTVKSDGGTY 133
Cdd:PRK06215  88 iksyphvaKNIGK---PLSSLGTLSSSFNVTVPSSGAYETAYDiWDSSNAYEIMLwVNYTGAVGPIGSKQTNVSVGGHTW 164

                        170       180
                 ....*....|....*....|.
gi 633366278 134 DIYTTTRYNAPSIDGDRTTFT 154
Cdd:PRK06215 165 NVYKGSNGSNKVFSFLRTSNT 185
 
Name Accession Description Interval E-value
Glyco_hydro_11 pfam00457
Glycosyl hydrolases family 11;
30-209 4.17e-88

Glycosyl hydrolases family 11;


Pssm-ID: 459818  Cd Length: 175  Bit Score: 257.04  E-value: 4.17e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633366278   30 STDYWQNWTDGGGIVNAVNGSGGNYSVNWSNTGNFVVGKGWTTGSPfRTINYNaGVWAPNGNGYLTLYGWTRSPLIEYYV 109
Cdd:pfam00457   1 NGYYYSFWTDGGGNVTYTNGAGGSYSVTWSNGGNFVGGKGWNPGSN-RTINYS-GTFNPSGNSYLAVYGWTTNPLVEYYI 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633366278  110 VDSWGTYRP--TGTYKGTVKSDGGTYDIYTTTRYNAPSIDGdRTTFTQYWSVRQTKRPTGsnaTITFSNHVNAWKSHGMN 187
Cdd:pfam00457  79 VESYGTYNPssGGTYKGTVTSDGGTYDIYTTTRVNQPSIDG-TATFQQYWSVRQSKRTSG---TITTANHFNAWASLGLN 154

                         170       180
                  ....*....|....*....|..
gi 633366278  188 LGSnWAYQVMATEGYQSSGSSN 209
Cdd:pfam00457 155 LGT-HNYQIVATEGYQSSGSAS 175
PRK06215 PRK06215
hypothetical protein; Provisional
 1-154 1.70e-03

hypothetical protein; Provisional


Pssm-ID: 235746  Cd Length: 238  Bit Score: 38.23  E-value: 1.70e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633366278   1 MFKFKKNFLVGLSAALMSISLFSATASAA---STDYWQNWTDGG-GIVNAVNGSGGNYSVNWSNTGN------------- 63
Cdd:PRK06215   8 RMRRSIRLLVAALALAATVALATGPAQAAtwsSSDQWGTWSNGGyTLYNDVWGSGAGPQTIWANSYSnwgvwanhpntgg 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 633366278  64 --------FVVGKgwtTGSPFRTINYNAGVWAPNGNGYLTLYG-WTRSPLIEYYV-VDSWGTYRPTGTYKGTVKSDGGTY 133
Cdd:PRK06215  88 iksyphvaKNIGK---PLSSLGTLSSSFNVTVPSSGAYETAYDiWDSSNAYEIMLwVNYTGAVGPIGSKQTNVSVGGHTW 164

                        170       180
                 ....*....|....*....|.
gi 633366278 134 DIYTTTRYNAPSIDGDRTTFT 154
Cdd:PRK06215 165 NVYKGSNGSNKVFSFLRTSNT 185
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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