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Conserved domains on  [gi|635263132|gb|AHZ66345|]
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cytochrome b, partial (mitochondrion) [Cinara splendens]

Protein Classification

cytochrome b/b6( domain architecture ID 11475928)

cytochrome b/b6 (PetB) is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme; cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes; in plants and cyanobacteria, cytochrome b6 is analogous to cytochrome b and contains two chains: helices A-D (encoded by petB) and helices E-H (encoded by petD)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 1-253 8.95e-145

cytochrome b; Provisional


:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 409.17  E-value: 8.95e-145
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132   1 LLMICLMNQILTGLFLAFHYKTDINLAFQSIINMNRNINFGWLIRSFHANGASMFFIMMYMHISRGIYYNSFNFKLTWLI 80
Cdd:MTH00156  26 LLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMS 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132  81 GVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIHFILPFIILMFIFI 160
Cdd:MTH00156 106 GVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMI 185

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132 161 HLMFLHLTGSNNPLGINSNFDKITFSPYFIIKDLIGLIMFLWMFISLTLMFPFLLNDHNNFIMANPMITPNHIQPEWYFL 240
Cdd:MTH00156 186 HLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFL 265

                        250
                 ....*....|...
gi 635263132 241 FSYSILRAIPNKL 253
Cdd:MTH00156 266 FAYAILRSIPNKL 278
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 1-253 8.95e-145

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 409.17  E-value: 8.95e-145
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132   1 LLMICLMNQILTGLFLAFHYKTDINLAFQSIINMNRNINFGWLIRSFHANGASMFFIMMYMHISRGIYYNSFNFKLTWLI 80
Cdd:MTH00156  26 LLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMS 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132  81 GVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIHFILPFIILMFIFI 160
Cdd:MTH00156 106 GVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMI 185

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132 161 HLMFLHLTGSNNPLGINSNFDKITFSPYFIIKDLIGLIMFLWMFISLTLMFPFLLNDHNNFIMANPMITPNHIQPEWYFL 240
Cdd:MTH00156 186 HLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFL 265

                        250
                 ....*....|...
gi 635263132 241 FSYSILRAIPNKL 253
Cdd:MTH00156 266 FAYAILRSIPNKL 278
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-251 2.12e-94

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 282.45  E-value: 2.12e-94
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132   1 LLMICLMNQILTGLFLAFHYKTDINLAFQSIINMNRNINFGWLIRSFHANGASMFFIMMYMHISRGIYYNSFNF--KLTW 78
Cdd:COG1290   45 LALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYKKprELNW 124

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132  79 LIGVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIH-FILPFIILMF 157
Cdd:COG1290  125 IIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLAL 204

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132 158 IFIHLMFLHLTGSNNPLGI----NSNFDKITFSPYFIIKDLIGLIMFLWMFISLTLMFPFllNDHNNFIMANPMITPNHI 233
Cdd:COG1290  205 VVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHI 282

                        250
                 ....*....|....*...
gi 635263132 234 QPEWYFLFSYSILRAIPN 251
Cdd:COG1290  283 QPDWYFLPFYGILRAIPG 300
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-171 2.32e-67

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 206.84  E-value: 2.32e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132   1 LLMICLMNQILTGLFLAFHYKTDINLAFQSIINMNRNINFGWLIRSFHANGASMFFIMMYMHISRGIYYNSFN--FKLTW 78
Cdd:cd00284   28 LLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKkpRELTW 107

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132  79 LIGVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIHFILPFIILMFI 158
Cdd:cd00284  108 VIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIV 187

                        170
                 ....*....|...
gi 635263132 159 FIHLMFLHLTGSN 171
Cdd:cd00284  188 ILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-169 2.16e-61

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 191.44  E-value: 2.16e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132    1 LLMICLMNQILTGLFLAFHYKTDINLAFQSIINMNRNINFGWLIRSFHANGASMFFIMMYMHISRGIYYNSFN--FKLTW 78
Cdd:pfam00033  19 LLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGGFSypRELTW 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132   79 LIGVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIHFILPFIILMFI 158
Cdd:pfam00033  99 VIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILM 178

                         170
                  ....*....|.
gi 635263132  159 FIHLMFLHLTG 169
Cdd:pfam00033 179 LLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 224-253 2.52e-04

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 40.55  E-value: 2.52e-04
                          10        20        30
                  ....*....|....*....|....*....|
gi 635263132  224 ANPMITPNHIQPEWYFLFSYSILRAIPNKL 253
Cdd:TIGR01156  66 ANPFATPLEILPEWYFYPVFQILRTVPNKL 95
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 1-253 8.95e-145

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 409.17  E-value: 8.95e-145
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132   1 LLMICLMNQILTGLFLAFHYKTDINLAFQSIINMNRNINFGWLIRSFHANGASMFFIMMYMHISRGIYYNSFNFKLTWLI 80
Cdd:MTH00156  26 LLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMS 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132  81 GVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIHFILPFIILMFIFI 160
Cdd:MTH00156 106 GVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMI 185

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132 161 HLMFLHLTGSNNPLGINSNFDKITFSPYFIIKDLIGLIMFLWMFISLTLMFPFLLNDHNNFIMANPMITPNHIQPEWYFL 240
Cdd:MTH00156 186 HLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFL 265

                        250
                 ....*....|...
gi 635263132 241 FSYSILRAIPNKL 253
Cdd:MTH00156 266 FAYAILRSIPNKL 278
CYTB MTH00119
cytochrome b; Provisional
 1-253 1.58e-137

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 391.57  E-value: 1.58e-137
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132   1 LLMICLMNQILTGLFLAFHYKTDINLAFQSIINMNRNINFGWLIRSFHANGASMFFIMMYMHISRGIYYNSFNFKLTWLI 80
Cdd:MTH00119  37 LLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNT 116

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132  81 GVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIHFILPFIILMFIFI 160
Cdd:MTH00119 117 GVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLI 196

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132 161 HLMFLHLTGSNNPLGINSNFDKITFSPYFIIKDLIGLIMFLWMFISLTLMFPFLLNDHNNFIMANPMITPNHIQPEWYFL 240
Cdd:MTH00119 197 HLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFL 276

                        250
                 ....*....|...
gi 635263132 241 FSYSILRAIPNKL 253
Cdd:MTH00119 277 FAYAILRSIPNKL 289
CYTB MTH00131
cytochrome b; Provisional
 1-253 5.25e-135

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 385.16  E-value: 5.25e-135
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132   1 LLMICLMNQILTGLFLAFHYKTDINLAFQSIINMNRNINFGWLIRSFHANGASMFFIMMYMHISRGIYYNSFNFKLTWLI 80
Cdd:MTH00131  36 LLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNI 115

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132  81 GVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIHFILPFIILMFIFI 160
Cdd:MTH00131 116 GVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATIL 195

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132 161 HLMFLHLTGSNNPLGINSNFDKITFSPYFIIKDLIGLIMFLWMFISLTLMFPFLLNDHNNFIMANPMITPNHIQPEWYFL 240
Cdd:MTH00131 196 HLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFL 275

                        250
                 ....*....|...
gi 635263132 241 FSYSILRAIPNKL 253
Cdd:MTH00131 276 FAYAILRSIPNKL 288
CYTB MTH00145
cytochrome b; Provisional
 1-253 1.69e-131

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 376.17  E-value: 1.69e-131
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132   1 LLMICLMNQILTGLFLAFHYKTDINLAFQSIINMNRNINFGWLIRSFHANGASMFFIMMYMHISRGIYYNSFNFKLTWLI 80
Cdd:MTH00145  37 LLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNI 116

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132  81 GVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIHFILPFIILMFIFI 160
Cdd:MTH00145 117 GVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVL 196

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132 161 HLMFLHLTGSNNPLGINSNFDKITFSPYFIIKDLIGLIMFLWMFISLTLMFPFLLNDHNNFIMANPMITPNHIQPEWYFL 240
Cdd:MTH00145 197 HLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFL 276

                        250
                 ....*....|...
gi 635263132 241 FSYSILRAIPNKL 253
Cdd:MTH00145 277 FAYAILRSIPNKL 289
CYTB MTH00100
cytochrome b; Provisional
 1-253 6.86e-129

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 369.74  E-value: 6.86e-129
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132   1 LLMICLMNQILTGLFLAFHYKTDINLAFQSIINMNRNINFGWLIRSFHANGASMFFIMMYMHISRGIYYNSFNFKLTWLI 80
Cdd:MTH00100  36 LLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNI 115

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132  81 GVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIHFILPFIILMFIFI 160
Cdd:MTH00100 116 GIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMV 195

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132 161 HLMFLHLTGSNNPLGINSNFDKITFSPYFIIKDLIGLIMFLWMFISLTLMFPFLLNDHNNFIMANPMITPNHIQPEWYFL 240
Cdd:MTH00100 196 HLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFL 275

                        250
                 ....*....|...
gi 635263132 241 FSYSILRAIPNKL 253
Cdd:MTH00100 276 FAYAILRSIPNKL 288
CYTB MTH00191
cytochrome b; Provisional
 1-253 1.50e-128

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 368.47  E-value: 1.50e-128
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132   1 LLMICLMNQILTGLFLAFHYKTDINLAFQSIINMNRNINFGWLIRSFHANGASMFFIMMYMHISRGIYYNSFNFKLTWLI 80
Cdd:MTH00191  33 LLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNV 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132  81 GVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIHFILPFIILMFIFI 160
Cdd:MTH00191 113 GVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLI 192

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132 161 HLMFLHLTGSNNPLGINSNFDKITFSPYFIIKDLIGLIMFLWMFISLTLMFPFLLNDHNNFIMANPMITPNHIQPEWYFL 240
Cdd:MTH00191 193 HLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFL 272

                        250
                 ....*....|...
gi 635263132 241 FSYSILRAIPNKL 253
Cdd:MTH00191 273 FAYAILRSIPNKL 285
CYTB MTH00074
cytochrome b; Provisional
 1-253 6.01e-126

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 362.46  E-value: 6.01e-126
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132   1 LLMICLMNQILTGLFLAFHYKTDINLAFQSIINMNRNINFGWLIRSFHANGASMFFIMMYMHISRGIYYNSFNFKLTWLI 80
Cdd:MTH00074  37 LLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNI 116

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132  81 GVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIHFILPFIILMFIFI 160
Cdd:MTH00074 117 GVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASII 196

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132 161 HLMFLHLTGSNNPLGINSNFDKITFSPYFIIKDLIGLIMFLWMFISLTLMFPFLLNDHNNFIMANPMITPNHIQPEWYFL 240
Cdd:MTH00074 197 HLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFL 276

                        250
                 ....*....|...
gi 635263132 241 FSYSILRAIPNKL 253
Cdd:MTH00074 277 FAYAILRSIPNKL 289
CYTB MTH00016
cytochrome b; Validated
 1-253 1.42e-121

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 351.29  E-value: 1.42e-121
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132   1 LLMICLMNQILTGLFLAFHYKTDINLAFQSIINMNRNINFGWLIRSFHANGASMFFIMMYMHISRGIYYNSFNFKLTWLI 80
Cdd:MTH00016  37 LLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNI 116

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132  81 GVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIHFILPFIILMFIFI 160
Cdd:MTH00016 117 GVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMI 196

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132 161 HLMFLHLTGSNNPLGINSNFDKITFSPYFIIKDLIGLIMFLWMFISLTLMFPFLLNDHNNFIMANPMITPNHIQPEWYFL 240
Cdd:MTH00016 197 HLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFL 276

                        250
                 ....*....|...
gi 635263132 241 FSYSILRAIPNKL 253
Cdd:MTH00016 277 WAYAILRSIPNKL 289
CYTB MTH00034
cytochrome b; Validated
 1-253 3.84e-121

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 350.16  E-value: 3.84e-121
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132   1 LLMICLMNQILTGLFLAFHYKTDINLAFQSIINMNRNINFGWLIRSFHANGASMFFIMMYMHISRGIYYNSFNFKLTWLI 80
Cdd:MTH00034  36 LLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNI 115

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132  81 GVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIHFILPFIILMFIFI 160
Cdd:MTH00034 116 GVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSII 195

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132 161 HLMFLHLTGSNNPLGINSNFDKITFSPYFIIKDLIGLIMFLWMFISLTLMFPFLLNDHNNFIMANPMITPNHIQPEWYFL 240
Cdd:MTH00034 196 HLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFL 275

                        250
                 ....*....|...
gi 635263132 241 FSYSILRAIPNKL 253
Cdd:MTH00034 276 FAYAILRSIPNKL 288
CYTB MTH00022
cytochrome b; Validated
 1-253 1.47e-105

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 310.48  E-value: 1.47e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132   1 LLMICLMNQILTGLFLAFHYKTDINLAFQSIINMNRNINFGWLIRSFHANGASMFFIMMYMHISRGIYYNSFNFKLTWLI 80
Cdd:MTH00022  35 LLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNV 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132  81 GVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIHFILPFIILMFIFI 160
Cdd:MTH00022 115 GVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIV 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132 161 HLMFLHLTGSNNPLGINSNFDKITFSPYFIIKDLIGLIMFLWMFISLTLMFPFLLNDHNNFIMANPMITPNHIQPEWYFL 240
Cdd:MTH00022 195 HLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFL 274

                        250
                 ....*....|...
gi 635263132 241 FSYSILRAIPNKL 253
Cdd:MTH00022 275 FAYAILRSIPNKL 287
CYTB MTH00053
cytochrome b; Provisional
 1-253 3.78e-105

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 309.33  E-value: 3.78e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132   1 LLMICLMNQILTGLFLAFHYKTDINLAFQSIINMNRNINFGWLIRSFHANGASMFFIMMYMHISRGIYYNSFNFKLTWLI 80
Cdd:MTH00053  37 LLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNV 116

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132  81 GVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIHFILPFIILMFIFI 160
Cdd:MTH00053 117 GVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALV 196

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132 161 HLMFLHLTGSNNPLGINSNFDKITFSPYFIIKDLIGLIMFLWMFISLTLMFPFLLNDHNNFIMANPMITPNHIQPEWYFL 240
Cdd:MTH00053 197 HLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFL 276

                        250
                 ....*....|...
gi 635263132 241 FSYSILRAIPNKL 253
Cdd:MTH00053 277 FAYAILRSIPNKL 289
CYTB MTH00224
cytochrome b; Provisional
 1-253 7.15e-105

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 308.77  E-value: 7.15e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132   1 LLMICLMNQILTGLFLAFHYKTDINLAFQSIINMNRNINFGWLIRSFHANGASMFFIMMYMHISRGIYYNSFNFKLTWLI 80
Cdd:MTH00224  37 LLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNI 116

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132  81 GVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIHFILPFIILMFIFI 160
Cdd:MTH00224 117 GVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATIL 196

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132 161 HLMFLHLTGSNNPLGINSNFDKITFSPYFIIKDLIGLIMFLWMFISLTLMFPFLLNDHNNFIMANPMITPNHIQPEWYFL 240
Cdd:MTH00224 197 HIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFL 276

                        250
                 ....*....|...
gi 635263132 241 FSYSILRAIPNKL 253
Cdd:MTH00224 277 WMYAILRSIPNKL 289
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-251 2.12e-94

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 282.45  E-value: 2.12e-94
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132   1 LLMICLMNQILTGLFLAFHYKTDINLAFQSIINMNRNINFGWLIRSFHANGASMFFIMMYMHISRGIYYNSFNF--KLTW 78
Cdd:COG1290   45 LALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYKKprELNW 124

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132  79 LIGVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIH-FILPFIILMF 157
Cdd:COG1290  125 IIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLAL 204

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132 158 IFIHLMFLHLTGSNNPLGI----NSNFDKITFSPYFIIKDLIGLIMFLWMFISLTLMFPFllNDHNNFIMANPMITPNHI 233
Cdd:COG1290  205 VVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHI 282

                        250
                 ....*....|....*...
gi 635263132 234 QPEWYFLFSYSILRAIPN 251
Cdd:COG1290  283 QPDWYFLPFYGILRAIPG 300
CYTB MTH00086
cytochrome b; Provisional
 1-253 2.62e-89

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 268.35  E-value: 2.62e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132   1 LLMICLMNQILTGLFLAFHYKTDINLAFQSIINMNRNINFGWLIRSFHANGASMFFIMMYMHISRGIYYNSFNFKLTWLI 80
Cdd:MTH00086  25 MLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWIS 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132  81 GVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIHFILPFIILMFIFI 160
Cdd:MTH00086 105 GLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLF 184

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132 161 HLMFLHLTGSNNPLGINSNFDKITFSPYFIIKDLIGLIMFLWMFIsLTLMFPFLLNDHNNFIMANPMITPNHIQPEWYFL 240
Cdd:MTH00086 185 HLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFWLVFII-FSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFL 263

                        250
                 ....*....|...
gi 635263132 241 FSYSILRAIPNKL 253
Cdd:MTH00086 264 FAYAILRAIPNKV 276
CYTB MTH00033
cytochrome b; Provisional
 1-253 3.93e-86

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 261.03  E-value: 3.93e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132   1 LLMICLMNQILTGLFLAFHYKTDINLAFQSIINMNRNINFGWLIRSFHANGASMFFIMMYMHISRGIYYNSFNFKLTWLI 80
Cdd:MTH00033  33 LLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIV 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132  81 GVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIHFILPFIILMFIFI 160
Cdd:MTH00033 113 GVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLA 192

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132 161 HLMFLHLTGSNNPLGINSNFDKITFSPYFIIKDLIGLIMFLWMF--ISLTLMFPFLLNDHNNFIMANPMITPNHIQPEWY 238
Cdd:MTH00033 193 HLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFviIGIEPRIETLLQDPENFIQANPLVTPVHIQPEWY 272

                        250
                 ....*....|....*
gi 635263132 239 FLFSYSILRAIPNKL 253
Cdd:MTH00033 273 FLFAYAILRSIPNKL 287
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-171 2.32e-67

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 206.84  E-value: 2.32e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132   1 LLMICLMNQILTGLFLAFHYKTDINLAFQSIINMNRNINFGWLIRSFHANGASMFFIMMYMHISRGIYYNSFN--FKLTW 78
Cdd:cd00284   28 LLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKkpRELTW 107

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132  79 LIGVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIHFILPFIILMFI 158
Cdd:cd00284  108 VIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIV 187

                        170
                 ....*....|...
gi 635263132 159 FIHLMFLHLTGSN 171
Cdd:cd00284  188 ILHLLFLHEQGSS 200
CYTB MTH00046
cytochrome b; Validated
 9-253 2.80e-65

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 206.76  E-value: 2.80e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132   9 QILTGLFLAFHYKTDINLAFQSIINMNRNINFGWLIRSFHANGASMFFIMMYMHISRGIYYNSFNFKLTWLIGVILLLLT 88
Cdd:MTH00046  35 QVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVGFILYLLV 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132  89 MMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIHFILPFIILMFIFIHLMFLHLT 168
Cdd:MTH00046 115 MVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKS 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132 169 GSNNPLGINSNF-DKITFSPYFIIKDLIGLIMFLWMFISLTLMFPFLLNDHNNFIMANPMITPNHIQPEWYFLFSYSILR 247
Cdd:MTH00046 195 GSSNPLFSSNGYsDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLR 274


                 ....*.
gi 635263132 248 AIPNKL 253
Cdd:MTH00046 275 SINSKI 280
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-169 2.16e-61

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 191.44  E-value: 2.16e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132    1 LLMICLMNQILTGLFLAFHYKTDINLAFQSIINMNRNINFGWLIRSFHANGASMFFIMMYMHISRGIYYNSFN--FKLTW 78
Cdd:pfam00033  19 LLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGGFSypRELTW 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132   79 LIGVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIHFILPFIILMFI 158
Cdd:pfam00033  99 VIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILM 178

                         170
                  ....*....|.
gi 635263132  159 FIHLMFLHLTG 169
Cdd:pfam00033 179 LLHLLFLHETG 189
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
53-215 5.52e-40

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 135.83  E-value: 5.52e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132   53 SMFFIMMYMHISRGIYYNSFNF--KLTWLIGVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIW 130
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKprELNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132  131 GGFSINNATLTRFFSIHF-ILPFIILMFIFIHLMFLHLTGSNNPLGINSNFDKITFSPYFIIKDLIGLIMFLWMFISLTL 209
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*.
gi 635263132  210 MFPFLL 215
Cdd:pfam13631 161 INPIWL 166
PRK03735 PRK03735
cytochrome b6; Provisional
 1-174 4.83e-39

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 135.22  E-value: 4.83e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132   1 LLMICLMNQILTGLFLAFHYKTDINLAFQSIINMNRNINFGWLIRSFHANGASMFFIMMYMHISRGIYYNSFN--FKLTW 78
Cdd:PRK03735  47 LTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKkpRELNW 126

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132  79 LIGVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIH-FILPFIILMF 157
Cdd:PRK03735 127 VVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVL 206

                        170
                 ....*....|....*..
gi 635263132 158 IFIHLMFLHLTGSNNPL 174
Cdd:PRK03735 207 MLAHFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 3-174 1.15e-36

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 128.69  E-value: 1.15e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132   3 MICLMNQILTGLFLAFHYKTDINLAFQSIINMNRNINFGWLIRSFHANGASMFFIMMYMHISRgiYYNSFNFK----LTW 78
Cdd:CHL00070  41 LTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFR--VYLTGGFKkpreLTW 118

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132  79 LIGVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYLGNSIVIWIWGGFSINNATLTRFFSIH-FILPFIILMF 157
Cdd:CHL00070 119 VTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVF 198

                        170
                 ....*....|....*..
gi 635263132 158 IFIHLMFLHLTGSNNPL 174
Cdd:CHL00070 199 MLMHFLMIRKQGISGPL 215
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 172-253 1.80e-19

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 81.92  E-value: 1.80e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635263132 172 NPLGINSNFDKITFSPYFIIKDLIGLIMFLWMFISLTLMFPFLLNDHNNFIMANPMITPNHIQPEWYFLFSYSILRAIPN 251
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80


                 ..
gi 635263132 252 KL 253
Cdd:cd00290   81 KL 82
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
223-253 6.99e-12

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 60.18  E-value: 6.99e-12
                          10        20        30
                  ....*....|....*....|....*....|.
gi 635263132  223 MANPMITPNHIQPEWYFLFSYSILRAIPNKL 253
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKL 31
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 205-253 1.96e-05

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 43.63  E-value: 1.96e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 635263132 205 ISLTLMFPFLLNDHnnfimANPMITPNHIQPEWYFLFSYSILRAIPNKL 253
Cdd:COG5679   53 IGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKL 96
petD CHL00058
cytochrome b6/f complex subunit IV
 224-253 2.92e-05

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 43.07  E-value: 2.92e-05
                         10        20        30
                 ....*....|....*....|....*....|
gi 635263132 224 ANPMITPNHIQPEWYFLFSYSILRAIPNKL 253
Cdd:CHL00058  66 ADPFATPLEILPEWYFFPVFQILRTVPNKL 95
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 224-253 2.52e-04

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 40.55  E-value: 2.52e-04
                          10        20        30
                  ....*....|....*....|....*....|
gi 635263132  224 ANPMITPNHIQPEWYFLFSYSILRAIPNKL 253
Cdd:TIGR01156  66 ANPFATPLEILPEWYFYPVFQILRTVPNKL 95
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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