|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-343 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 683.94 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 1 LG*CLMTQIITGLLLAMHYTADTSLAFTSVSHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTG 80
Cdd:MTH00119 38 LGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTG 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 81 VILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFILPFAIAGLTFIH 160
Cdd:MTH00119 118 VILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIH 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 161 LTFLHETGSNNPLGIASNCDKIPFHPYFSMKDILGLMFLLLPLMMLATFSPNLLGDPENFTPANPLVTPPHIKPEWYFLF 240
Cdd:MTH00119 198 LLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLF 277
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 241 AYAILRSIPNKLGGVLALAASVLILLLVPFLHMSKQRTMAFRPLSQFLFWTLVANLLILTWIGSQPVEHPFIIIGQLASI 320
Cdd:MTH00119 278 AYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASI 357
|
330 340
....*....|....*....|...
gi 649912513 321 TYFTTLLILFPTTGALENKI*NL 343
Cdd:MTH00119 358 LYFTILLILFPLLGALENKMLNY 380
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
4-337 |
2.20e-121 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 354.87 E-value: 2.20e-121
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 4 CLMTQIITGLLLAMHYTADTSLAFTSVSHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYlyKE----TWNT 79
Cdd:COG1290 49 SFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--KKprelNWII 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 80 GVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FILPFAIAGLTF 158
Cdd:COG1290 127 GVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVV 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 159 IHLTFLHETGSNNPLGI----ASNCDKIPFHPYFSMKDILGLMFLLLPLMMLATFSPNllGDPENFTPANPLVTPPHIKP 234
Cdd:COG1290 207 LHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQP 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 235 EWYFLFAYAILRSIP--NKLGGVLALAASVLILLLVPFLHMSKQRTMAFRPLSQFLFWTLVANLLILTWIGSQPVehPFI 312
Cdd:COG1290 285 DWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP--IAT 362
|
330 340
....*....|....*....|....*
gi 649912513 313 IIGQLASITYFTTLLILFPTTGALE 337
Cdd:COG1290 363 LLGSINTVTYFAFFLIVLPILAFIE 387
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-170 |
9.23e-83 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 249.59 E-value: 9.23e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 1 LG*CLMTQIITGLLLAMHYTADTSLAFTSVSHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSY--LYKETWN 78
Cdd:cd00284 29 LGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWV 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 79 TGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFILPFAIAGLTF 158
Cdd:cd00284 109 IGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVI 188
|
170
....*....|..
gi 649912513 159 IHLTFLHETGSN 170
Cdd:cd00284 189 LHLLFLHEQGSS 200
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
1-168 |
4.91e-71 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 219.18 E-value: 4.91e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 1 LG*CLMTQIITGLLLAMHYTADTSLAFTSVSHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYG--SYLYKETWN 78
Cdd:pfam00033 20 LGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWV 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 79 TGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFILPFAIAGLTF 158
Cdd:pfam00033 100 IGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILML 179
|
170
....*....|
gi 649912513 159 IHLTFLHETG 168
Cdd:pfam00033 180 LHLLFLHETG 189
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
207-294 |
1.62e-12 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 64.43 E-value: 1.62e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 207 ATFSPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILLLVPFLHMSKQRTMAF-RPLS 285
Cdd:TIGR01156 55 AVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFrRPVA 129
|
90
....*....|.
gi 649912513 286 Q--FLFWTLVA 294
Cdd:TIGR01156 130 TtvFLFGTVVA 140
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-343 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 683.94 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 1 LG*CLMTQIITGLLLAMHYTADTSLAFTSVSHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTG 80
Cdd:MTH00119 38 LGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTG 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 81 VILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFILPFAIAGLTFIH 160
Cdd:MTH00119 118 VILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIH 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 161 LTFLHETGSNNPLGIASNCDKIPFHPYFSMKDILGLMFLLLPLMMLATFSPNLLGDPENFTPANPLVTPPHIKPEWYFLF 240
Cdd:MTH00119 198 LLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLF 277
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 241 AYAILRSIPNKLGGVLALAASVLILLLVPFLHMSKQRTMAFRPLSQFLFWTLVANLLILTWIGSQPVEHPFIIIGQLASI 320
Cdd:MTH00119 278 AYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASI 357
|
330 340
....*....|....*....|...
gi 649912513 321 TYFTTLLILFPTTGALENKI*NL 343
Cdd:MTH00119 358 LYFTILLILFPLLGALENKMLNY 380
|
|
| CYTB |
MTH00131 |
cytochrome b; Provisional |
1-342 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177189 [Multi-domain] Cd Length: 380 Bit Score: 623.60 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 1 LG*CLMTQIITGLLLAMHYTADTSLAFTSVSHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTG 80
Cdd:MTH00131 37 LGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIG 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 81 VILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFILPFAIAGLTFIH 160
Cdd:MTH00131 117 VVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILH 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 161 LTFLHETGSNNPLGIASNCDKIPFHPYFSMKDILGLMFLLLPLMMLATFSPNLLGDPENFTPANPLVTPPHIKPEWYFLF 240
Cdd:MTH00131 197 LLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLF 276
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 241 AYAILRSIPNKLGGVLALAASVLILLLVPFLHMSKQRTMAFRPLSQFLFWTLVANLLILTWIGSQPVEHPFIIIGQLASI 320
Cdd:MTH00131 277 AYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASV 356
|
330 340
....*....|....*....|..
gi 649912513 321 TYFTTLLILFPTTGALENKI*N 342
Cdd:MTH00131 357 LYFSLFLVLMPLAGWLENKALE 378
|
|
| CYTB |
MTH00100 |
cytochrome b; Provisional |
1-340 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177162 [Multi-domain] Cd Length: 379 Bit Score: 614.72 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 1 LG*CLMTQIITGLLLAMHYTADTSLAFTSVSHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTG 80
Cdd:MTH00100 37 LGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIG 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 81 VILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFILPFAIAGLTFIH 160
Cdd:MTH00100 117 IILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVH 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 161 LTFLHETGSNNPLGIASNCDKIPFHPYFSMKDILGLMFLLLPLMMLATFSPNLLGDPENFTPANPLVTPPHIKPEWYFLF 240
Cdd:MTH00100 197 LLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLF 276
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 241 AYAILRSIPNKLGGVLALAASVLILLLVPFLHMSKQRTMAFRPLSQFLFWTLVANLLILTWIGSQPVEHPFIIIGQLASI 320
Cdd:MTH00100 277 AYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASI 356
|
330 340
....*....|....*....|
gi 649912513 321 TYFTTLLILFPTTGALENKI 340
Cdd:MTH00100 357 LYFLIILILMPIASLIENNL 376
|
|
| CYTB |
MTH00074 |
cytochrome b; Provisional |
1-343 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177145 [Multi-domain] Cd Length: 380 Bit Score: 599.36 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 1 LG*CLMTQIITGLLLAMHYTADTSLAFTSVSHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTG 80
Cdd:MTH00074 38 LGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIG 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 81 VILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFILPFAIAGLTFIH 160
Cdd:MTH00074 118 VILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIH 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 161 LTFLHETGSNNPLGIASNCDKIPFHPYFSMKDILGLMFLLLPLMMLATFSPNLLGDPENFTPANPLVTPPHIKPEWYFLF 240
Cdd:MTH00074 198 LLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLF 277
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 241 AYAILRSIPNKLGGVLALAASVLILLLVPFLHMSKQRTMAFRPLSQFLFWTLVANLLILTWIGSQPVEHPFIIIGQLASI 320
Cdd:MTH00074 278 AYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASI 357
|
330 340
....*....|....*....|...
gi 649912513 321 TYFTTLLILFPTTGALENKI*NL 343
Cdd:MTH00074 358 LYFLLFIIIIPLTGWLENKLLKW 380
|
|
| CYTB |
MTH00191 |
cytochrome b; Provisional |
1-331 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177239 [Multi-domain] Cd Length: 365 Bit Score: 575.71 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 1 LG*CLMTQIITGLLLAMHYTADTSLAFTSVSHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTG 80
Cdd:MTH00191 34 LGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNVG 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 81 VILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFILPFAIAGLTFIH 160
Cdd:MTH00191 114 VILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIH 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 161 LTFLHETGSNNPLGIASNCDKIPFHPYFSMKDILGLMFLLLPLMMLATFSPNLLGDPENFTPANPLVTPPHIKPEWYFLF 240
Cdd:MTH00191 194 LLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLF 273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 241 AYAILRSIPNKLGGVLALAASVLILLLVPFLHMSKQRTMAFRPLSQFLFWTLVANLLILTWIGSQPVEHPFIIIGQLASI 320
Cdd:MTH00191 274 AYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANFILLTWLGGQPVEDPFILLGQISSF 353
|
330
....*....|.
gi 649912513 321 TYFTTLLILFP 331
Cdd:MTH00191 354 LYFFLFLLLFP 364
|
|
| CYTB |
MTH00156 |
cytochrome b; Provisional |
1-330 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 565.56 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 1 LG*CLMTQIITGLLLAMHYTADTSLAFTSVSHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTG 80
Cdd:MTH00156 27 LGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSG 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 81 VILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFILPFAIAGLTFIH 160
Cdd:MTH00156 107 VIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIH 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 161 LTFLHETGSNNPLGIASNCDKIPFHPYFSMKDILGLMFLLLPLMMLATFSPNLLGDPENFTPANPLVTPPHIKPEWYFLF 240
Cdd:MTH00156 187 LLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLF 266
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 241 AYAILRSIPNKLGGVLALAASVLILLLVPFLHMSKQRTMAFRPLSQFLFWTLVANLLILTWIGSQPVEHPFIIIGQLASI 320
Cdd:MTH00156 267 AYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQILTI 346
|
330
....*....|
gi 649912513 321 TYFTTLLILF 330
Cdd:MTH00156 347 LYFLYFIINP 356
|
|
| CYTB |
MTH00145 |
cytochrome b; Provisional |
1-340 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177203 [Multi-domain] Cd Length: 379 Bit Score: 549.12 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 1 LG*CLMTQIITGLLLAMHYTADTSLAFTSVSHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTG 80
Cdd:MTH00145 38 LGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIG 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 81 VILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFILPFAIAGLTFIH 160
Cdd:MTH00145 118 VTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLH 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 161 LTFLHETGSNNPLGIASNCDKIPFHPYFSMKDILGLMFLLLPLMMLATFSPNLLGDPENFTPANPLVTPPHIKPEWYFLF 240
Cdd:MTH00145 198 LLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLF 277
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 241 AYAILRSIPNKLGGVLALAASVLILLLVPFLHMSKQRTMAFRPLSQFLFWTLVANLLILTWIGSQPVEHPFIIIGQLASI 320
Cdd:MTH00145 278 AYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTV 357
|
330 340
....*....|....*....|
gi 649912513 321 TYFTTLLILfPTTGALENKI 340
Cdd:MTH00145 358 LYFLFFLIL-PLVQKLWDNI 376
|
|
| CYTB |
MTH00034 |
cytochrome b; Validated |
1-342 |
0e+00 |
|
cytochrome b; Validated
Pssm-ID: 177109 [Multi-domain] Cd Length: 379 Bit Score: 542.37 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 1 LG*CLMTQIITGLLLAMHYTADTSLAFTSVSHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTG 80
Cdd:MTH00034 37 LGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIG 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 81 VILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFILPFAIAGLTFIH 160
Cdd:MTH00034 117 VILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIH 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 161 LTFLHETGSNNPLGIASNCDKIPFHPYFSMKDILGLMFLLLPLMMLATFSPNLLGDPENFTPANPLVTPPHIKPEWYFLF 240
Cdd:MTH00034 197 LLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLF 276
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 241 AYAILRSIPNKLGGVLALAASVLILLLVPFLHMSKQRTMAFRPLSQFLFWTLVANLLILTWIGSQPVEHPFIIIGQLASI 320
Cdd:MTH00034 277 AYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIATFFILTWIGSQPVEYPFILLGQVASV 356
|
330 340
....*....|....*....|..
gi 649912513 321 TYFTTLLILFPTTGALENKI*N 342
Cdd:MTH00034 357 LYFSLFLFFFPLISYLENKLIF 378
|
|
| CYTB |
MTH00016 |
cytochrome b; Validated |
1-329 |
0e+00 |
|
cytochrome b; Validated
Pssm-ID: 177102 [Multi-domain] Cd Length: 378 Bit Score: 513.46 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 1 LG*CLMTQIITGLLLAMHYTADTSLAFTSVSHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTG 80
Cdd:MTH00016 38 LGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIG 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 81 VILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFILPFAIAGLTFIH 160
Cdd:MTH00016 118 VILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIH 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 161 LTFLHETGSNNPLGIASNCDKIPFHPYFSMKDILGLMFLLLPLMMLATFSPNLLGDPENFTPANPLVTPPHIKPEWYFLF 240
Cdd:MTH00016 198 LLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLW 277
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 241 AYAILRSIPNKLGGVLALAASVLILLLVPFLHMSKQRTMAFRPLSQFLFWTLVANLLILTWIGSQPVEHPFIIIGQLASI 320
Cdd:MTH00016 278 AYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTV 357
|
....*....
gi 649912513 321 TYFTTLLIL 329
Cdd:MTH00016 358 FYFFYFMIN 366
|
|
| CYTB |
MTH00053 |
cytochrome b; Provisional |
1-343 |
1.01e-166 |
|
cytochrome b; Provisional
Pssm-ID: 164624 [Multi-domain] Cd Length: 381 Bit Score: 469.57 E-value: 1.01e-166
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 1 LG*CLMTQIITGLLLAMHYTADTSLAFTSVSHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTG 80
Cdd:MTH00053 38 LGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVG 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 81 VILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFILPFAIAGLTFIH 160
Cdd:MTH00053 118 VLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVH 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 161 LTFLHETGSNNPLGIASNCDKIPFHPYFSMKDILGLMFLLLPLMMLATFSPNLLGDPENFTPANPLVTPPHIKPEWYFLF 240
Cdd:MTH00053 198 LIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLF 277
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 241 AYAILRSIPNKLGGVLALAASVLILLLVPFLHMSKQRTMAFRPLSQFLFWTLVANLLILTWIGSQPVEHPFIIIGQLASI 320
Cdd:MTH00053 278 AYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASI 357
|
330 340
....*....|....*....|...
gi 649912513 321 TYFTTLLILFPTTGALENKI*NL 343
Cdd:MTH00053 358 FYFAYFLILMPLAGYLENKLLKL 380
|
|
| CYTB |
MTH00022 |
cytochrome b; Validated |
1-340 |
2.80e-165 |
|
cytochrome b; Validated
Pssm-ID: 164595 [Multi-domain] Cd Length: 379 Bit Score: 465.71 E-value: 2.80e-165
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 1 LG*CLMTQIITGLLLAMHYTADTSLAFTSVSHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTG 80
Cdd:MTH00022 36 LGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVG 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 81 VILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFILPFAIAGLTFIH 160
Cdd:MTH00022 116 VVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVH 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 161 LTFLHETGSNNPLGIASNCDKIPFHPYFSMKDILGLMFLLLPLMMLATFSPNLLGDPENFTPANPLVTPPHIKPEWYFLF 240
Cdd:MTH00022 196 LIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLF 275
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 241 AYAILRSIPNKLGGVLALAASVLILLLVPFLHMSKQRTMAFRPLSQFLFWTLVANLLILTWIGSQPVEHPFIIIGQLASI 320
Cdd:MTH00022 276 AYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSF 355
|
330 340
....*....|....*....|
gi 649912513 321 TYFTTLLILFPTTGALENKI 340
Cdd:MTH00022 356 FYFFYFLVLIPLLGELENQL 375
|
|
| CYTB |
MTH00224 |
cytochrome b; Provisional |
1-342 |
2.33e-154 |
|
cytochrome b; Provisional
Pssm-ID: 164767 [Multi-domain] Cd Length: 379 Bit Score: 438.20 E-value: 2.33e-154
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 1 LG*CLMTQIITGLLLAMHYTADTSLAFTSVSHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTG 80
Cdd:MTH00224 38 LGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIG 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 81 VILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFILPFAIAGLTFIH 160
Cdd:MTH00224 118 VILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILH 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 161 LTFLHETGSNNPLGIASNCDKIPFHPYFSMKDILGLMFLLLPLMMLATFSPNLLGDPENFTPANPLVTPPHIKPEWYFLF 240
Cdd:MTH00224 198 IMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLW 277
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 241 AYAILRSIPNKLGGVLALAASVLILLLVPFLHMSKQRTMAFRPLSQFLFWTLVANLLILTWIGSQPVEHPFIIIGQLASI 320
Cdd:MTH00224 278 MYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTI 357
|
330 340
....*....|....*....|..
gi 649912513 321 TYFtTLLILFPTTGALENKI*N 342
Cdd:MTH00224 358 LYF-SYFIISPAISKLWDDLLN 378
|
|
| CYTB |
MTH00033 |
cytochrome b; Provisional |
1-338 |
7.30e-125 |
|
cytochrome b; Provisional
Pssm-ID: 133672 [Multi-domain] Cd Length: 383 Bit Score: 363.49 E-value: 7.30e-125
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 1 LG*CLMTQIITGLLLAMHYTADTSLAFTSVSHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTG 80
Cdd:MTH00033 34 LCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVG 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 81 VILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFILPFAIAGLTFIH 160
Cdd:MTH00033 114 VLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAH 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 161 LTFLHETGSNNPLGIASNCDKIPFHPYFSMKDILGLMFLLLPLMMLATFS--PNLLGDPENFTPANPLVTPPHIKPEWYF 238
Cdd:MTH00033 194 LLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDPENFIQANPLVTPVHIQPEWYF 273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 239 LFAYAILRSIPNKLGGVLALAASVLILLLVPFLHMSKQRTMAFRPLSQFLFWTLVANLLILTWIGSQPV-EHPFIIIGQL 317
Cdd:MTH00033 274 LFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILTWIGSAPAgADPYVLIGRI 353
|
330 340
....*....|....*....|.
gi 649912513 318 ASITYFTTLLILFPTTGALEN 338
Cdd:MTH00033 354 ATIFYFGYFLVLVPLLGYLSN 374
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
4-337 |
2.20e-121 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 354.87 E-value: 2.20e-121
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 4 CLMTQIITGLLLAMHYTADTSLAFTSVSHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYlyKE----TWNT 79
Cdd:COG1290 49 SFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--KKprelNWII 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 80 GVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FILPFAIAGLTF 158
Cdd:COG1290 127 GVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVV 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 159 IHLTFLHETGSNNPLGI----ASNCDKIPFHPYFSMKDILGLMFLLLPLMMLATFSPNllGDPENFTPANPLVTPPHIKP 234
Cdd:COG1290 207 LHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQP 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 235 EWYFLFAYAILRSIP--NKLGGVLALAASVLILLLVPFLHMSKQRTMAFRPLSQFLFWTLVANLLILTWIGSQPVehPFI 312
Cdd:COG1290 285 DWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP--IAT 362
|
330 340
....*....|....*....|....*
gi 649912513 313 IIGQLASITYFTTLLILFPTTGALE 337
Cdd:COG1290 363 LLGSINTVTYFAFFLIVLPILAFIE 387
|
|
| CYTB |
MTH00086 |
cytochrome b; Provisional |
1-330 |
2.65e-110 |
|
cytochrome b; Provisional
Pssm-ID: 177151 [Multi-domain] Cd Length: 355 Bit Score: 325.36 E-value: 2.65e-110
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 1 LG*CLMTQIITGLLLAMHYTADTSLAFTSVSHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTG 80
Cdd:MTH00086 26 LGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISG 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 81 VILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFILPFAIAGLTFIH 160
Cdd:MTH00086 106 LTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFH 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 161 LTFLHETGSNNPLGIASNCDKIPFHPYFSMKDiLGLMFLLLPLMMLATFSPNLLGDPENFTPANPLVTPPHIKPEWYFLF 240
Cdd:MTH00086 186 LIFLHSTGSTSSLYCHGDYDKICFGPEYWNKD-AYNIIFWLVFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLF 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 241 AYAILRSIPNKLGGVLALAASVLILLLVPFLhmsKQRTMAFRPLSQFLFWTLVANLLILTWIGSQPVEHPFIIIGQLASI 320
Cdd:MTH00086 265 AYAILRAIPNKVLGVIALLMSIVVFYFFIFV---NNYTSCLNKLNKFLVFSFIVVNVILSWLGQCLVEYPFLFLSQIFSF 341
|
330
....*....|
gi 649912513 321 TYFTTLLILF 330
Cdd:MTH00086 342 IYFFLILLML 351
|
|
| CYTB |
MTH00046 |
cytochrome b; Validated |
1-320 |
5.68e-87 |
|
cytochrome b; Validated
Pssm-ID: 177121 [Multi-domain] Cd Length: 355 Bit Score: 265.69 E-value: 5.68e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 1 LG*CLMTQIITGLLLAMHYTADTSLAFTSVSHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNTG 80
Cdd:MTH00046 28 LSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVG 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 81 VILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFILPFAIAGLTFIH 160
Cdd:MTH00046 108 FILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVH 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 161 LTFLHETGSNNPLGIASN-CDKIPFHPYFSMKDILGLMFLLLPLMMLATFSPNLLGDPENFTPANPLVTPPHIKPEWYFL 239
Cdd:MTH00046 188 LFYLHKSGSSNPLFSSNGySDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFL 267
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 240 FAYAILRSIPNKLGGvLALAASVLILLLVPflhmSKQRTMAFRPLSQFLFWTLVANLLILTWIGSQPVEHPFIIIGQLAS 319
Cdd:MTH00046 268 AFYAMLRSINSKIGG-LVLVLSFLFFLWVP----TFNGSSVYSVWRQVNFWLIVSLFFSLSYLGGCHPEYPYLLISQLFS 342
|
.
gi 649912513 320 I 320
Cdd:MTH00046 343 V 343
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-170 |
9.23e-83 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 249.59 E-value: 9.23e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 1 LG*CLMTQIITGLLLAMHYTADTSLAFTSVSHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSY--LYKETWN 78
Cdd:cd00284 29 LGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWV 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 79 TGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFILPFAIAGLTF 158
Cdd:cd00284 109 IGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVI 188
|
170
....*....|..
gi 649912513 159 IHLTFLHETGSN 170
Cdd:cd00284 189 LHLLFLHEQGSS 200
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
1-168 |
4.91e-71 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 219.18 E-value: 4.91e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 1 LG*CLMTQIITGLLLAMHYTADTSLAFTSVSHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYG--SYLYKETWN 78
Cdd:pfam00033 20 LGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWV 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 79 TGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFILPFAIAGLTF 158
Cdd:pfam00033 100 IGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILML 179
|
170
....*....|
gi 649912513 159 IHLTFLHETG 168
Cdd:pfam00033 180 LHLLFLHETG 189
|
|
| cytochrome_b_C |
cd00290 |
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
171-318 |
6.17e-56 |
|
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 178.99 E-value: 6.17e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 171 NPLGIASNCDKIPFHPYFSMKDILGLMFLLLPLMMLATFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 250
Cdd:cd00290 1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 649912513 251 KLGGVLALAASVLILLLVPFLHMSKQRTMaFRPLSQFLFWTLVANLLILTWIGSQPVEHPFIIIGQLA 318
Cdd:cd00290 81 KLLGVLAMAASILSLFLVPFLENSNKRSQ-FRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
|
|
| Cytochrom_B_C |
pfam00032 |
Cytochrome b(C-terminal)/b6/petD; |
222-322 |
1.58e-49 |
|
Cytochrome b(C-terminal)/b6/petD;
Pssm-ID: 459640 [Multi-domain] Cd Length: 101 Bit Score: 160.72 E-value: 1.58e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 222 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILLLVPFLHMSKQRTMAFRPLSQFLFWTLVANLLILTW 301
Cdd:pfam00032 1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80
|
90 100
....*....|....*....|.
gi 649912513 302 IGSQPVEHPFIIIGQLASITY 322
Cdd:pfam00032 81 LGKQPPTGPYTLLGQIATVYY 101
|
|
| Cytochrom_B_N_2 |
pfam13631 |
Cytochrome b(N-terminal)/b6/petB; |
52-217 |
6.03e-42 |
|
Cytochrome b(N-terminal)/b6/petB;
Pssm-ID: 433364 Cd Length: 169 Bit Score: 143.54 E-value: 6.03e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 52 SFFFICIYLHIGRGLYYGSYLYKE--TWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAW 129
Cdd:pfam13631 1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 130 GGFSVDNPTLTRFFALHF-ILPFAIAGLTFIHLTFLHETGSNNPLGIASNCDKIPFHPYFSMKDILGLMFLLLPLMMLAT 208
Cdd:pfam13631 81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160
|
....*....
gi 649912513 209 FSPNLLGDP 217
Cdd:pfam13631 161 INPIWLGGP 169
|
|
| PRK03735 |
PRK03735 |
cytochrome b6; Provisional |
4-173 |
4.55e-34 |
|
cytochrome b6; Provisional
Pssm-ID: 179639 Cd Length: 223 Bit Score: 124.82 E-value: 4.55e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 4 CLMTQIITGLLLAMHYTADTSLAFTSVSHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKE--TWNTGV 81
Cdd:PRK03735 51 CFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRelNWVVGV 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 82 ILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FILPFAIAGLTFIH 160
Cdd:PRK03735 131 LIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAH 210
|
170
....*....|...
gi 649912513 161 LTFLHETGSNNPL 173
Cdd:PRK03735 211 FLMIRKQGISGPL 223
|
|
| petB |
CHL00070 |
cytochrome b6 |
4-173 |
8.24e-31 |
|
cytochrome b6
Pssm-ID: 177009 Cd Length: 215 Bit Score: 115.97 E-value: 8.24e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 4 CLMTQIITGLLLAMHYTADTSLAFTSVSHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKE--TWNTGV 81
Cdd:CHL00070 43 CFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRelTWVTGV 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 82 ILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FILPFAIAGLTFIH 160
Cdd:CHL00070 123 VLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMH 202
|
170
....*....|...
gi 649912513 161 LTFLHETGSNNPL 173
Cdd:CHL00070 203 FLMIRKQGISGPL 215
|
|
| petD |
CHL00058 |
cytochrome b6/f complex subunit IV |
207-294 |
4.71e-15 |
|
cytochrome b6/f complex subunit IV
Pssm-ID: 176998 Cd Length: 160 Bit Score: 71.57 E-value: 4.71e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 207 ATFSPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILLLVPFL-HMSKQRTMAFRP-- 283
Cdd:CHL00058 55 AVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLeNVNKFQNPFRRPva 129
|
90
....*....|.
gi 649912513 284 LSQFLFWTLVA 294
Cdd:CHL00058 130 TTVFLIGTAVA 140
|
|
| PetD |
COG5679 |
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ... |
207-293 |
2.81e-13 |
|
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];
Pssm-ID: 444393 [Multi-domain] Cd Length: 161 Bit Score: 66.74 E-value: 2.81e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 207 ATFSPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILLLVPFL-HMSKQRTMAFRPLS 285
Cdd:COG5679 56 AVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIeNVNKFQNPFRRPVA 130
|
90
....*....|
gi 649912513 286 Q--FLFWTLV 293
Cdd:COG5679 131 TavFLFGTLV 140
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
207-294 |
1.62e-12 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 64.43 E-value: 1.62e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912513 207 ATFSPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILLLVPFLHMSKQRTMAF-RPLS 285
Cdd:TIGR01156 55 AVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFrRPVA 129
|
90
....*....|.
gi 649912513 286 Q--FLFWTLVA 294
Cdd:TIGR01156 130 TtvFLFGTVVA 140
|
|
|