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Conserved domains on  [gi|663504035|gb|AIE94837|]
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ribosomal protein S7P (RP-S7, rpsG) [uncultured marine group II/III euryarchaeote AD1000_53_H05]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
uS7 super family cl00313
Ribosomal protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the ...
 25-206 1.01e-85

Ribosomal protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


The actual alignment was detected with superfamily member PRK04027:

Pssm-ID: 444827  Cd Length: 195  Bit Score: 251.36  E-value: 1.01e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663504035  25 LFGKWDLTEVNIVDTTLEKYINLDAFQVPHTGGRHSKKKFGKRGLTVIERFINNLMRSEKYTGKKAQAYTVLKNSFEMIH 104
Cdd:PRK04027  13 LFGKWDVEEVEVRDPSLKRYINLTPVLVPHTGGRHAKKQFGKAEVPIVERLINKLMRTERNTGKKQKAYNIVKEAFEIIE 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663504035 105 TKKKENPAQIMVQALENSAPRAAVVSLRYGGIRVYSGVDVSPTRRVDIAIRNLCIGALESS-KKQRSIEKSLARELMLAS 183
Cdd:PRK04027  93 KRTKQNPIQVLVDAIENAAPREETTRIKYGGISYPKAVDVSPQRRVDLALRFIAEGARQASfKNKKSIEEALAEEIIAAA 172

                        170       180
                 ....*....|....*....|...
gi 663504035 184 EINPDSYAISKKEETERQAEAAH 206
Cdd:PRK04027 173 NNDPKSYAVRKKEEIERVAKSAR 195
 
Name Accession Description Interval E-value
PRK04027 PRK04027
30S ribosomal protein S7P; Reviewed
 25-206 1.01e-85

30S ribosomal protein S7P; Reviewed


Pssm-ID: 235204  Cd Length: 195  Bit Score: 251.36  E-value: 1.01e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663504035  25 LFGKWDLTEVNIVDTTLEKYINLDAFQVPHTGGRHSKKKFGKRGLTVIERFINNLMRSEKYTGKKAQAYTVLKNSFEMIH 104
Cdd:PRK04027  13 LFGKWDVEEVEVRDPSLKRYINLTPVLVPHTGGRHAKKQFGKAEVPIVERLINKLMRTERNTGKKQKAYNIVKEAFEIIE 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663504035 105 TKKKENPAQIMVQALENSAPRAAVVSLRYGGIRVYSGVDVSPTRRVDIAIRNLCIGALESS-KKQRSIEKSLARELMLAS 183
Cdd:PRK04027  93 KRTKQNPIQVLVDAIENAAPREETTRIKYGGISYPKAVDVSPQRRVDLALRFIAEGARQASfKNKKSIEEALAEEIIAAA 172

                        170       180
                 ....*....|....*....|...
gi 663504035 184 EINPDSYAISKKEETERQAEAAH 206
Cdd:PRK04027 173 NNDPKSYAVRKKEEIERVAKSAR 195
uS7_Eukaryote cd14867
Eukaryota homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an ...
 25-205 1.43e-75

Eukaryota homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Eukaryotic RPS7 (also named RPS5) have variable N-terminal regions that affect the efficiency of initiation translation process by impacting small ribosomal subunit to function. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit which is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271246  Cd Length: 185  Bit Score: 225.51  E-value: 1.43e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663504035  25 LFGKWDLTEVNIVDTTLEKYINLD-AFQVPHTGGRHSKKKFGKRGLTVIERFINNLMRSEKYTGKKAQAYTVLKNSFEMI 103
Cdd:cd14867    2 LFGKWSYDDVEVKDPSLKDYINLKyPVYVPHTAGRYQKKRFRKAQCPIVERLINSLMMHGRNTGKKLMAYRIVKHAFEII 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663504035 104 HTKKKENPAQIMVQALENSAPRAAVVSLRYGGIRVYSGVDVSPTRRVDIAIRNLCIGALESS-KKQRSIEKSLARELMLA 182
Cdd:cd14867   82 HLLTGKNPIQVLVDAIENSGPREDTTRIGYGGTVRRQAVDVSPLRRVNQALRLIATGAREAAfRNIKSIAECLADELINA 161

                        170       180
                 ....*....|....*....|...
gi 663504035 183 SEINPDSYAISKKEETERQAEAA 205
Cdd:cd14867  162 AKGSSNSYAIKKKDELERVAKSN 184
uS7_euk_arch TIGR01028
ribosomal protein uS7, eukaryotic/archaeal; This model describes the members from the ...
 25-206 5.01e-67

ribosomal protein uS7, eukaryotic/archaeal; This model describes the members from the eukaryotic cytosol and the Archaea of the family that includes ribosomal protein uS7 (previously S5 in yeast and human). A separate model describes bacterial and organellar S7. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273402  Cd Length: 186  Bit Score: 203.85  E-value: 5.01e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663504035   25 LFGKWDLTEVNIVDTTLEKYINLDAFQVPHTGGRHSKKKFGKRGLTVIERFINNLMRSEKYTGKKAQAYTVLKNSFEMIH 104
Cdd:TIGR01028   4 VFGKWSTEEVEVKDPSLKDYINLEPIYVPHTAGRHAKKQFRKAKVPIVERLINKVMRSGRNNGKKLKAYRIVKEAFEIIE 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663504035  105 TKKKENPAQIMVQALENSAPRAAVVSLRYGGIRVYSGVDVSPTRRVDIAIRNLCIGALESS-KKQRSIEKSLARELMLAS 183
Cdd:TIGR01028  84 KRTKKNPIQVLVDAIENAGPREDTTRVGYGGIAYRQAVDISPLRRVDQALRNIALGAREAAfRNKKSIAECLAEEIILAA 163

                         170       180
                  ....*....|....*....|...
gi 663504035  184 EINPDSYAISKKEETERQAEAAH 206
Cdd:TIGR01028 164 NGDSKSYAIKKKEELERVAKSAR 186
Ribosomal_S7 pfam00177
Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 ...
 70-205 1.41e-45

Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.


Pssm-ID: 425505  Cd Length: 132  Bit Score: 147.14  E-value: 1.41e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663504035   70 TVIERFINNLMRsekyTGKKAQAYTVLKNSFEMIHTKKKENPAQIMVQALENSAPRAAVVSLRYGGIRVYSGVDVSPTRR 149
Cdd:pfam00177   4 PLVEKLINRLMR----DGKKSLAERIVYGAFDIIEEKTGKNPLEVFVKALENVKPRVEVKSRRVGGATYQVPVEVRPERR 79

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 663504035  150 VDIAIRNLCIGAleSSKKQRSIEKSLARELMLASeiNPDSYAISKKEETERQAEAA 205
Cdd:pfam00177  80 VALALRWIIEAA--RKRSEKSMAERLANELIDAA--NGRGAAVKKKEETHRMAEAN 131
RpsG COG0049
Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 ...
 70-206 1.01e-21

Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439819  Cd Length: 156  Bit Score: 86.65  E-value: 1.01e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663504035  70 TVIERFINNLMRSekytGKKAQAYTVLKNSFEMIHTKKKENPAQIMVQALENSAPRAAVVSLRYGGiRVYS-GVDVSPTR 148
Cdd:COG0049   21 VLVTKFINKIMLD----GKKSVAEKIVYGALDIIEEKTGEDPLEVFEKALENVKPLVEVKSRRVGG-ATYQvPVEVRPER 95

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 663504035 149 RVDIAIRNLcIGALeSSKKQRSIEKSLARELMLASeiNPDSYAISKKEETERQAEA----AH 206
Cdd:COG0049   96 RQALAMRWI-IDAA-RKRKEKTMAERLANELLDAS--NNRGAAVKKREDTHKMAEAnkafAH 153
 
Name Accession Description Interval E-value
PRK04027 PRK04027
30S ribosomal protein S7P; Reviewed
 25-206 1.01e-85

30S ribosomal protein S7P; Reviewed


Pssm-ID: 235204  Cd Length: 195  Bit Score: 251.36  E-value: 1.01e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663504035  25 LFGKWDLTEVNIVDTTLEKYINLDAFQVPHTGGRHSKKKFGKRGLTVIERFINNLMRSEKYTGKKAQAYTVLKNSFEMIH 104
Cdd:PRK04027  13 LFGKWDVEEVEVRDPSLKRYINLTPVLVPHTGGRHAKKQFGKAEVPIVERLINKLMRTERNTGKKQKAYNIVKEAFEIIE 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663504035 105 TKKKENPAQIMVQALENSAPRAAVVSLRYGGIRVYSGVDVSPTRRVDIAIRNLCIGALESS-KKQRSIEKSLARELMLAS 183
Cdd:PRK04027  93 KRTKQNPIQVLVDAIENAAPREETTRIKYGGISYPKAVDVSPQRRVDLALRFIAEGARQASfKNKKSIEEALAEEIIAAA 172

                        170       180
                 ....*....|....*....|...
gi 663504035 184 EINPDSYAISKKEETERQAEAAH 206
Cdd:PRK04027 173 NNDPKSYAVRKKEEIERVAKSAR 195
uS7_Eukaryote cd14867
Eukaryota homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an ...
 25-205 1.43e-75

Eukaryota homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Eukaryotic RPS7 (also named RPS5) have variable N-terminal regions that affect the efficiency of initiation translation process by impacting small ribosomal subunit to function. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit which is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271246  Cd Length: 185  Bit Score: 225.51  E-value: 1.43e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663504035  25 LFGKWDLTEVNIVDTTLEKYINLD-AFQVPHTGGRHSKKKFGKRGLTVIERFINNLMRSEKYTGKKAQAYTVLKNSFEMI 103
Cdd:cd14867    2 LFGKWSYDDVEVKDPSLKDYINLKyPVYVPHTAGRYQKKRFRKAQCPIVERLINSLMMHGRNTGKKLMAYRIVKHAFEII 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663504035 104 HTKKKENPAQIMVQALENSAPRAAVVSLRYGGIRVYSGVDVSPTRRVDIAIRNLCIGALESS-KKQRSIEKSLARELMLA 182
Cdd:cd14867   82 HLLTGKNPIQVLVDAIENSGPREDTTRIGYGGTVRRQAVDVSPLRRVNQALRLIATGAREAAfRNIKSIAECLADELINA 161

                        170       180
                 ....*....|....*....|...
gi 663504035 183 SEINPDSYAISKKEETERQAEAA 205
Cdd:cd14867  162 AKGSSNSYAIKKKDELERVAKSN 184
uS7_euk_arch TIGR01028
ribosomal protein uS7, eukaryotic/archaeal; This model describes the members from the ...
 25-206 5.01e-67

ribosomal protein uS7, eukaryotic/archaeal; This model describes the members from the eukaryotic cytosol and the Archaea of the family that includes ribosomal protein uS7 (previously S5 in yeast and human). A separate model describes bacterial and organellar S7. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273402  Cd Length: 186  Bit Score: 203.85  E-value: 5.01e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663504035   25 LFGKWDLTEVNIVDTTLEKYINLDAFQVPHTGGRHSKKKFGKRGLTVIERFINNLMRSEKYTGKKAQAYTVLKNSFEMIH 104
Cdd:TIGR01028   4 VFGKWSTEEVEVKDPSLKDYINLEPIYVPHTAGRHAKKQFRKAKVPIVERLINKVMRSGRNNGKKLKAYRIVKEAFEIIE 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663504035  105 TKKKENPAQIMVQALENSAPRAAVVSLRYGGIRVYSGVDVSPTRRVDIAIRNLCIGALESS-KKQRSIEKSLARELMLAS 183
Cdd:TIGR01028  84 KRTKKNPIQVLVDAIENAGPREDTTRVGYGGIAYRQAVDISPLRRVDQALRNIALGAREAAfRNKKSIAECLAEEIILAA 163

                         170       180
                  ....*....|....*....|...
gi 663504035  184 EINPDSYAISKKEETERQAEAAH 206
Cdd:TIGR01028 164 NGDSKSYAIKKKEELERVAKSAR 186
PTZ00091 PTZ00091
40S ribosomal protein S5; Provisional
 23-204 5.76e-51

40S ribosomal protein S5; Provisional


Pssm-ID: 185439  Cd Length: 193  Bit Score: 163.01  E-value: 5.76e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663504035  23 VPLFGKWDLTEVNIVDTTLEKYINLDAFQ---VPHTGGRHSKKKFGKRGLTVIERFINNLMRSEKYTGKKAQAYTVLKNS 99
Cdd:PTZ00091   6 PKLFGKWSYDDVQVSDLSLKDYIAVTTKAsvfVPHTAGRYQKKRFRKAQCPIVERLVNSLMFHGRNNGKKLLAVRIVKHA 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663504035 100 FEMIHTKKKENPAQIMVQALENSAPRAAVVSLRYGGIRVYSGVDVSPTRRVDIAIRNLCIGALESS-KKQRSIEKSLARE 178
Cdd:PTZ00091  86 FEIIHLLTDKNPLQVLVDAVQNGGPREDSTRVGSGGVVRRQAVDVSPLRRVNQAIYLICKGAREAAfRNIKTIAECLADE 165

                        170       180
                 ....*....|....*....|....*.
gi 663504035 179 LMLASEINPDSYAISKKEETERQAEA 204
Cdd:PTZ00091 166 IINASKESSNSYAIKKKDEVERVAKA 191
Ribosomal_S7 pfam00177
Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 ...
 70-205 1.41e-45

Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.


Pssm-ID: 425505  Cd Length: 132  Bit Score: 147.14  E-value: 1.41e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663504035   70 TVIERFINNLMRsekyTGKKAQAYTVLKNSFEMIHTKKKENPAQIMVQALENSAPRAAVVSLRYGGIRVYSGVDVSPTRR 149
Cdd:pfam00177   4 PLVEKLINRLMR----DGKKSLAERIVYGAFDIIEEKTGKNPLEVFVKALENVKPRVEVKSRRVGGATYQVPVEVRPERR 79

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 663504035  150 VDIAIRNLCIGAleSSKKQRSIEKSLARELMLASeiNPDSYAISKKEETERQAEAA 205
Cdd:pfam00177  80 VALALRWIIEAA--RKRSEKSMAERLANELIDAA--NGRGAAVKKKEETHRMAEAN 131
uS7_Bacteria cd14869
Bacterial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an ...
 70-204 4.47e-22

Bacterial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Prokaryotic RPS7 is lacking the variable N-terminal region of eukaryotic RPS7. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit which is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271248  Cd Length: 138  Bit Score: 87.12  E-value: 4.47e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663504035  70 TVIERFINNLMRSekytGKKAQAYTVLKNSFEMIHTKKKENPAQIMVQALENSAPRAAVVSLRYGG--IRVysGVDVSPT 147
Cdd:cd14869   10 VLVSKFINKLMKD----GKKSVAEKIVYDALEIIKKKTGKDPLEVFEKALENVKPLVEVRSRRVGGatYQV--PVEVRPE 83

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 663504035 148 RRVDIAIRNLCIGAleSSKKQRSIEKSLARELMLASeiNPDSYAISKKEETERQAEA 204
Cdd:cd14869   84 RRQSLALRWIIEAA--RKRKEKSMAEKLAAELLDAA--NNTGAAVKKKEDTHKMAEA 136
RpsG COG0049
Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 ...
 70-206 1.01e-21

Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439819  Cd Length: 156  Bit Score: 86.65  E-value: 1.01e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663504035  70 TVIERFINNLMRSekytGKKAQAYTVLKNSFEMIHTKKKENPAQIMVQALENSAPRAAVVSLRYGGiRVYS-GVDVSPTR 148
Cdd:COG0049   21 VLVTKFINKIMLD----GKKSVAEKIVYGALDIIEEKTGEDPLEVFEKALENVKPLVEVKSRRVGG-ATYQvPVEVRPER 95

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 663504035 149 RVDIAIRNLcIGALeSSKKQRSIEKSLARELMLASeiNPDSYAISKKEETERQAEA----AH 206
Cdd:COG0049   96 RQALAMRWI-IDAA-RKRKEKTMAERLANELLDAS--NNRGAAVKKREDTHKMAEAnkafAH 153
PRK05302 PRK05302
30S ribosomal protein S7; Validated
 70-206 9.91e-20

30S ribosomal protein S7; Validated


Pssm-ID: 235398  Cd Length: 156  Bit Score: 81.69  E-value: 9.91e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663504035  70 TVIERFINNLMRSekytGKKAQAYTVLKNSFEMIHTKKKENPAQIMVQALENSAPRAAVVSLRYGG--IRVysGVDVSPT 147
Cdd:PRK05302  21 VLVTKFINKLMLD----GKKSVAEKIVYGALDIIEEKTGKDPLEVFEKALENVKPVVEVKSRRVGGatYQV--PVEVRPE 94

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 663504035 148 RRVDIAIRNLcigaLESSKK--QRSIEKSLARELMLASeiNPDSYAISKKEETERQAEA----AH 206
Cdd:PRK05302  95 RRQALAMRWL----VEAARKrgEKTMAERLANELLDAA--NNRGAAVKKREDTHRMAEAnkafAH 153
uS7 cd00323
Ribosomal protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the ...
 70-204 5.20e-19

Ribosomal protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271245  Cd Length: 130  Bit Score: 79.22  E-value: 5.20e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663504035  70 TVIERFINNLMRSekytGKKAQAYTVLKNSFEMIHTKKKENPAQIMVQALENSAPRAAVVSLRYGGIRVYSGVDVSPTRR 149
Cdd:cd00323    2 LLLKKFINILMKD----GKKSKAEKIFSKALKILKKKTKKNPLKLLVEAIENIKPLVEVRSIKKRGKVYQVPVPLSPNRQ 77

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 663504035 150 VDIAIRNLCIGAleSSKKQRSIEKSLARELMLASeiNPDSYAISKKEETERQAEA 204
Cdd:cd00323   78 VSLAIKWLLKAV--RKRKETSFAERLANEILDAS--NNKGASIKKKDDLHKLAEA 128
uS7_Chloroplast cd14871
Chloroplast homolog of Ribosomal Protein S7; Chloroplast RPS7 has both general and specific ...
 71-204 1.40e-16

Chloroplast homolog of Ribosomal Protein S7; Chloroplast RPS7 has both general and specific regulatory roles in chloroplast translation process. uS7, also known as Ribosomal protein (RP)S7, is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. The chloroplasts of plants and algae have bacterial ancestry, but it has adopted novel mechanisms in order to execute its roles within a eukaryotic cell. Chloroplast RPS7 is more homologous to bacterial RPS7 than other eukaryotic mitochondrial proteins. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The chloroplast translation regulation is more complex than in bacteria with additional RNA and chloroplast-unique proteins. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271250  Cd Length: 146  Bit Score: 73.08  E-value: 1.40e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663504035  71 VIERFINNLMRSekytGKKAQAYTVLKNSFEMIHTKKKENPAQIMVQALENSAPRAAVVSLRYGGIRVYSGVDVSPTRRV 150
Cdd:cd14871   14 LVNMLVNRILKS----GKKSLAYRIVYEALKEIKQKTKQDPLEVLEQAIRNVTPLVEVKARRVGGSTYQVPVEVRSERGT 89

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 663504035 151 DIAIRNLcigaLESSKKQ--RSIEKSLARELMLASeiNPDSYAISKKEETERQAEA 204
Cdd:cd14871   90 ALAIRWL----LKASRKRsgRSMASKLANEIIDAA--KNTGNAIRKKEETHRMAEA 139
rps7 CHL00053
ribosomal protein S7
 76-204 2.18e-13

ribosomal protein S7


Pssm-ID: 176994  Cd Length: 155  Bit Score: 64.91  E-value: 2.18e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663504035  76 INNLMRSekytGKKAQAYTVLKNSFEMIHTKKKENPAQIMVQALENSAPRAAVVSLRYGGIRVYSGVDVSPTRRVDIAIR 155
Cdd:CHL00053  27 VNRILKS----GKKSLAYRIVYRALKKIQQKTEKNPLSVLRQAIRNVTPDVEVKARRVGGSTYQVPIEIGSTRGKALAIR 102

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 663504035 156 NLcigaLESSKKQ--RSIEKSLARELMLASEINPDsyAISKKEETERQAEA 204
Cdd:CHL00053 103 WL----LKASRKRsgRNMAFKLSSELVDAAKGSGN--AIRKKEETHRMAEA 147
uS7_Mitochondria_Fungi cd14868
Fungal Mitochondrial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP) ...
 71-202 5.34e-12

Fungal Mitochondrial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Fungal and plants mitochondrial RPS7 shows less homology to the mammalian than to bacterial RPS7. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271247  Cd Length: 151  Bit Score: 61.05  E-value: 5.34e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663504035  71 VIERFINNLMRSekytGKKAQAYTVLKNSFEMIHTKKKENPAQIMVQALENSAPRAAVVSLRYGGIRVYSGVDVSPTRRV 150
Cdd:cd14868   24 LLEQLTNLIMKH----GKKAKAQRIVSRALLHIHTLTRADPLPLLRQAIDSAAPLVKIKSQKKGAKNVQVPVPLNERQRR 99

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 663504035 151 DIAIRNLcigaLESSKKQRS--IEKSLARELMLAseINPDSYAISKKEETERQA 202
Cdd:cd14868  100 RKAIKWI----LEASDKRPGksFSERLAEEIIAV--VEGTSSALEKKEQVHKLA 147
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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