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Conserved domains on  [gi|663510745|gb|AIF01361|]
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hypothetical protein [uncultured marine thaumarchaeote KM3_146_F08]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3426 super family cl20436
Protein of unknown function (DUF3426); This family of proteins are functionally ...
 133-163 1.47e-03

Protein of unknown function (DUF3426); This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.


The actual alignment was detected with superfamily member NF038353:

Pssm-ID: 473367  Cd Length: 71  Bit Score: 36.40  E-value: 1.47e-03
                         10        20        30
                 ....*....|....*....|....*....|.
gi 663510745 133 VIKGTVANNGDITANMVKVIGTLYDRDGNVV 163
Cdd:NF038353   5 TVTGTVENTSDRPIGYVEVTFNLYDADGNQI 35
 
Name Accession Description Interval E-value
FxLYD_dom NF038353
FxLYD domain; The uncharacterized FxLYD domain, named for the strongest (but not invariant) ...
 133-163 1.47e-03

FxLYD domain; The uncharacterized FxLYD domain, named for the strongest (but not invariant) motif, spans about 75 amino acids usually in the C-terminal region of a protein.


Pssm-ID: 468489  Cd Length: 71  Bit Score: 36.40  E-value: 1.47e-03
                         10        20        30
                 ....*....|....*....|....*....|.
gi 663510745 133 VIKGTVANNGDITANMVKVIGTLYDRDGNVV 163
Cdd:NF038353   5 TVTGTVENTSDRPIGYVEVTFNLYDADGNQI 35
 
Name Accession Description Interval E-value
FxLYD_dom NF038353
FxLYD domain; The uncharacterized FxLYD domain, named for the strongest (but not invariant) ...
 133-163 1.47e-03

FxLYD domain; The uncharacterized FxLYD domain, named for the strongest (but not invariant) motif, spans about 75 amino acids usually in the C-terminal region of a protein.


Pssm-ID: 468489  Cd Length: 71  Bit Score: 36.40  E-value: 1.47e-03
                         10        20        30
                 ....*....|....*....|....*....|.
gi 663510745 133 VIKGTVANNGDITANMVKVIGTLYDRDGNVV 163
Cdd:NF038353   5 TVTGTVENTSDRPIGYVEVTFNLYDADGNQI 35
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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