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Conserved domains on  [gi|663531345|gb|AIF21308|]
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Archaeal ATPase family protein [uncultured marine group II/III euryarchaeote KM3_99_A09]

Protein Classification

ATP-binding protein( domain architecture ID 711917)

ATP-binding protein containing an AAA (ATPases Associated with a wide variety of cellular Activities) domain, may function as an ATPase, an ATP-dependent endonuclease, or the ATPase component of an ABC-type transporter

CATH:  3.40.50.300
Gene Ontology:  GO:0005524|GO:0016887
PubMed:  16828312|15037233|15037234|18208389|18466635
SCOP:  3002019

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
COG3899 super family cl28481
Predicted ATPase [General function prediction only];
115-838 1.38e-17

Predicted ATPase [General function prediction only];


The actual alignment was detected with superfamily member COG3899:

Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 87.99  E-value: 1.38e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345  115 AAAVEAAPFTIRAVDILRYLDESGVVDLRALSPDLIERDLAKHVEKQLVTSLEDLPRVRTFFGRENELKTMMDLIDA--- 191
Cdd:COG3899   229 AAPVVLVAALLLALAALLALLLLAARLLGLAGAAALLLLGLLAAAAAGRRLLARRLIPQPLVGREAELAALLAALERara 308

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345  192 -RSTTILVPGIAGIGKTALAGKMIEMFTHKRNLLYhRVQDWEGSR-----AFLESCGEWLSSIGDDSLNDY--------- 256
Cdd:COG3899   309 gRGELVLVSGEAGIGKSRLVRELARRARARGGRVL-RGKCDQLERgvpyaPLAQALRALLGQLPEDELAAWrarllaalg 387

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345  257 ------------LTATPIPSASIS-----------VDLIVEALATVPALIIVDDLHkVADDVLYSIVRGLTQRMDDlEET 313
Cdd:COG3899   388 angrlladllpeLELQPAPPELDPeearnrlfralLRLLRALAAERPLVLVLDDLH-WADPASLELLEFLLRRLRD-LPL 465

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345  314 GLVLFSRS---------FQSVVPLRDAEGNITTLvvPLDGLSREACRNFLPSL---EPVDDATFHHIYGLSRGHPLVLT- 380
Cdd:COG3899   466 LLVGTYRPeevppahplRLLLAELRRAGAGVTRL--ELGPLSREEVAALVADLlgaAELPAELAELLVERTGGNPFFLEe 543

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345  381 ----------------------LINRGSIGSTFHETLEMYVEQeifskLSGAEKRLLGALAIFREPMPLE---ALSGQDL 435
Cdd:COG3899   544 llralleegllrfdgggwrwdaALAALALPDTVVDLLAARLDR-----LPPAARRVLRLAAVLGRRFDLEllaAVLGLSE 618

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345  436 ET--NLLDDLVEKGLARQADSEMYD----VHDLIREFLSRSLDATTRDELHGKAVDWYRSRRSASEEQIEFL--YHLSNS 507
Cdd:COG3899   619 AElaAALEELVAAGLLVPRGDAGGGryrfRHDLVREAAYASLPPEERRALHRRIARALEARGPEPLEERLFElaHHLNRA 698

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345  508 GNAEELGKEVETTGAELVQTGH----IELLGI-LEALDEDQVSSQAWAVALELkANIFSLQGRWDEAQEVYKAALEIFAE 582
Cdd:COG3899   699 GERDRAARLLLRAARRALARGAyaeaLRYLERaLELLPPDPEEEYRLALLLEL-AEALYLAGRFEEAEALLERALAARAL 777

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345  583 ----SDDSELARARILSSQADISVTQGDLEGGLAMHREALESFIKLGDPQGAARTYNNMGFIFRRQRDTKRSIEVYENVE 658
Cdd:COG3899   778 aalaALRHGNPPASARAYANLGLLLLGDYEEAYEFGELALALAERLGDRRLEARALFNLGFILHWLGPLREALELLREAL 857

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345  659 KLLDSEDDYTLVESRIKLAAAFLDMGEMERAREHAFKAHEETLAAKDMAQHARARVVLGRFYAKTDDPELALHHYSEALE 738
Cdd:COG3899   858 EAGLETGDAALALLALAAAAAAAAAAAALAAAAAAAARLLAAAAAALAAAAAAAALAAAELARLAAAAAAAAALALAAAA 937

                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345  739 KLAEERDFHAAVEITLLLGEVLVDAGRREEALEQYRDALALAEANDYRMLIGELLSRLGEAAPDKSRRMEYLQRSLTVFR 818
Cdd:COG3899   938 AAAAAAALAAAAAAAALAAALALAAAAAAAAAAALAAAAAAAAAAAAAAAAAALEAAAAALLALLAAAAAAAAAAAALAA 1017

                         810       820
                  ....*....|....*....|
gi 663531345  819 ELGAQDRMRDVQAKVHRALM 838
Cdd:COG3899  1018 ALLAAALAALAAAAAAAALL 1037
 
Name Accession Description Interval E-value
COG3899 COG3899
Predicted ATPase [General function prediction only];
115-838 1.38e-17

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 87.99  E-value: 1.38e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345  115 AAAVEAAPFTIRAVDILRYLDESGVVDLRALSPDLIERDLAKHVEKQLVTSLEDLPRVRTFFGRENELKTMMDLIDA--- 191
Cdd:COG3899   229 AAPVVLVAALLLALAALLALLLLAARLLGLAGAAALLLLGLLAAAAAGRRLLARRLIPQPLVGREAELAALLAALERara 308

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345  192 -RSTTILVPGIAGIGKTALAGKMIEMFTHKRNLLYhRVQDWEGSR-----AFLESCGEWLSSIGDDSLNDY--------- 256
Cdd:COG3899   309 gRGELVLVSGEAGIGKSRLVRELARRARARGGRVL-RGKCDQLERgvpyaPLAQALRALLGQLPEDELAAWrarllaalg 387

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345  257 ------------LTATPIPSASIS-----------VDLIVEALATVPALIIVDDLHkVADDVLYSIVRGLTQRMDDlEET 313
Cdd:COG3899   388 angrlladllpeLELQPAPPELDPeearnrlfralLRLLRALAAERPLVLVLDDLH-WADPASLELLEFLLRRLRD-LPL 465

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345  314 GLVLFSRS---------FQSVVPLRDAEGNITTLvvPLDGLSREACRNFLPSL---EPVDDATFHHIYGLSRGHPLVLT- 380
Cdd:COG3899   466 LLVGTYRPeevppahplRLLLAELRRAGAGVTRL--ELGPLSREEVAALVADLlgaAELPAELAELLVERTGGNPFFLEe 543

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345  381 ----------------------LINRGSIGSTFHETLEMYVEQeifskLSGAEKRLLGALAIFREPMPLE---ALSGQDL 435
Cdd:COG3899   544 llralleegllrfdgggwrwdaALAALALPDTVVDLLAARLDR-----LPPAARRVLRLAAVLGRRFDLEllaAVLGLSE 618

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345  436 ET--NLLDDLVEKGLARQADSEMYD----VHDLIREFLSRSLDATTRDELHGKAVDWYRSRRSASEEQIEFL--YHLSNS 507
Cdd:COG3899   619 AElaAALEELVAAGLLVPRGDAGGGryrfRHDLVREAAYASLPPEERRALHRRIARALEARGPEPLEERLFElaHHLNRA 698

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345  508 GNAEELGKEVETTGAELVQTGH----IELLGI-LEALDEDQVSSQAWAVALELkANIFSLQGRWDEAQEVYKAALEIFAE 582
Cdd:COG3899   699 GERDRAARLLLRAARRALARGAyaeaLRYLERaLELLPPDPEEEYRLALLLEL-AEALYLAGRFEEAEALLERALAARAL 777

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345  583 ----SDDSELARARILSSQADISVTQGDLEGGLAMHREALESFIKLGDPQGAARTYNNMGFIFRRQRDTKRSIEVYENVE 658
Cdd:COG3899   778 aalaALRHGNPPASARAYANLGLLLLGDYEEAYEFGELALALAERLGDRRLEARALFNLGFILHWLGPLREALELLREAL 857

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345  659 KLLDSEDDYTLVESRIKLAAAFLDMGEMERAREHAFKAHEETLAAKDMAQHARARVVLGRFYAKTDDPELALHHYSEALE 738
Cdd:COG3899   858 EAGLETGDAALALLALAAAAAAAAAAAALAAAAAAAARLLAAAAAALAAAAAAAALAAAELARLAAAAAAAAALALAAAA 937

                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345  739 KLAEERDFHAAVEITLLLGEVLVDAGRREEALEQYRDALALAEANDYRMLIGELLSRLGEAAPDKSRRMEYLQRSLTVFR 818
Cdd:COG3899   938 AAAAAAALAAAAAAAALAAALALAAAAAAAAAAALAAAAAAAAAAAAAAAAAALEAAAAALLALLAAAAAAAAAAAALAA 1017

                         810       820
                  ....*....|....*....|
gi 663531345  819 ELGAQDRMRDVQAKVHRALM 838
Cdd:COG3899  1018 ALLAAALAALAAAAAAAALL 1037
TPR_12 pfam13424
Tetratricopeptide repeat;
710-782 1.48e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 46.61  E-value: 1.48e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 663531345  710 ARARVVLGRFYAKTDDPELALHHYSEALE--KLAEERDFHAAVEITLLLGEVLVDAGRREEALEQYRDALALAEA 782
Cdd:pfam13424   3 ATALNNLAAVLRRLGRYDEALELLEKALEiaRRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 530-812 1.87e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 45.07  E-value: 1.87e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345  530 IELLGILEALDEDQvssqaWAVALELKANIFSLQGRWDEAQEVYKAALEIFAESDDSELARARILssqadisVTQGDLEG 609
Cdd:TIGR02917 110 LDELPGKTLLDDEG-----AAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLA-------LAENRFDE 177

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345  610 GLAMHREALEsfiklGDPqGAARTYNNMGFIFRRQRDTKRSIEVYENVEKLldsedDYTLVESRIKLAAAFLDMGEMERA 689
Cdd:TIGR02917 178 ARALIDEVLT-----ADP-GNVDALLLKGDLLLSLGNIELALAAYRKAIAL-----RPNNIAVLLALATILIEAGEFEEA 246

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345  690 REHA------FKAHEETLAAKDMAQ-----HARARVVL------------GRFYAKT-----DDPELALHHYSEALEKLA 741
Cdd:TIGR02917 247 EKHAdallkkAPNSPLAHYLKALVDfqkknYEDARETLqdalksapeylpALLLAGAseyqlGNLEQAYQYLNQILKYAP 326

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 663531345  742 eerDFHAAVeitLLLGEVLVDAGRREEALEQYRDALALAEANdyrmliGELLSRLGE---AAPDKSRRMEYLQR 812
Cdd:TIGR02917 327 ---NSHQAR---RLLASIQLRLGRVDEAIATLSPALGLDPDD------PAALSLLGEaylALGDFEKAAEYLAK 388
PRK11788 PRK11788
tetratricopeptide repeat protein; Provisional
 640-777 1.26e-03

tetratricopeptide repeat protein; Provisional


Pssm-ID: 236983 [Multi-domain]  Cd Length: 389  Bit Score: 42.10  E-value: 1.26e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345 640 IFRRQRDTKRSIEVYENVEKLLDSEDDYTLVESRIKLAAAFLDMGEMERAREHAFKAheetLAAKdmAQHARARVVLGRF 719
Cdd:PRK11788 150 IYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKA----LAAD--PQCVRASILLGDL 223

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345 720 YAKTDDPELALHHY-----------SEALEKLAE-------ERDF----------HAAVEITLLLGEVLVDAGRREEALE 771
Cdd:PRK11788 224 ALAQGDYAAAIEALerveeqdpeylSEVLPKLMEcyqalgdEAEGleflrraleeYPGADLLLALAQLLEEQEGPEAAQA 303


                 ....*.
gi 663531345 772 QYRDAL 777
Cdd:PRK11788 304 LLREQL 309
 
Name Accession Description Interval E-value
COG3899 COG3899
Predicted ATPase [General function prediction only];
115-838 1.38e-17

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 87.99  E-value: 1.38e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345  115 AAAVEAAPFTIRAVDILRYLDESGVVDLRALSPDLIERDLAKHVEKQLVTSLEDLPRVRTFFGRENELKTMMDLIDA--- 191
Cdd:COG3899   229 AAPVVLVAALLLALAALLALLLLAARLLGLAGAAALLLLGLLAAAAAGRRLLARRLIPQPLVGREAELAALLAALERara 308

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345  192 -RSTTILVPGIAGIGKTALAGKMIEMFTHKRNLLYhRVQDWEGSR-----AFLESCGEWLSSIGDDSLNDY--------- 256
Cdd:COG3899   309 gRGELVLVSGEAGIGKSRLVRELARRARARGGRVL-RGKCDQLERgvpyaPLAQALRALLGQLPEDELAAWrarllaalg 387

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345  257 ------------LTATPIPSASIS-----------VDLIVEALATVPALIIVDDLHkVADDVLYSIVRGLTQRMDDlEET 313
Cdd:COG3899   388 angrlladllpeLELQPAPPELDPeearnrlfralLRLLRALAAERPLVLVLDDLH-WADPASLELLEFLLRRLRD-LPL 465

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345  314 GLVLFSRS---------FQSVVPLRDAEGNITTLvvPLDGLSREACRNFLPSL---EPVDDATFHHIYGLSRGHPLVLT- 380
Cdd:COG3899   466 LLVGTYRPeevppahplRLLLAELRRAGAGVTRL--ELGPLSREEVAALVADLlgaAELPAELAELLVERTGGNPFFLEe 543

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345  381 ----------------------LINRGSIGSTFHETLEMYVEQeifskLSGAEKRLLGALAIFREPMPLE---ALSGQDL 435
Cdd:COG3899   544 llralleegllrfdgggwrwdaALAALALPDTVVDLLAARLDR-----LPPAARRVLRLAAVLGRRFDLEllaAVLGLSE 618

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345  436 ET--NLLDDLVEKGLARQADSEMYD----VHDLIREFLSRSLDATTRDELHGKAVDWYRSRRSASEEQIEFL--YHLSNS 507
Cdd:COG3899   619 AElaAALEELVAAGLLVPRGDAGGGryrfRHDLVREAAYASLPPEERRALHRRIARALEARGPEPLEERLFElaHHLNRA 698

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345  508 GNAEELGKEVETTGAELVQTGH----IELLGI-LEALDEDQVSSQAWAVALELkANIFSLQGRWDEAQEVYKAALEIFAE 582
Cdd:COG3899   699 GERDRAARLLLRAARRALARGAyaeaLRYLERaLELLPPDPEEEYRLALLLEL-AEALYLAGRFEEAEALLERALAARAL 777

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345  583 ----SDDSELARARILSSQADISVTQGDLEGGLAMHREALESFIKLGDPQGAARTYNNMGFIFRRQRDTKRSIEVYENVE 658
Cdd:COG3899   778 aalaALRHGNPPASARAYANLGLLLLGDYEEAYEFGELALALAERLGDRRLEARALFNLGFILHWLGPLREALELLREAL 857

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345  659 KLLDSEDDYTLVESRIKLAAAFLDMGEMERAREHAFKAHEETLAAKDMAQHARARVVLGRFYAKTDDPELALHHYSEALE 738
Cdd:COG3899   858 EAGLETGDAALALLALAAAAAAAAAAAALAAAAAAAARLLAAAAAALAAAAAAAALAAAELARLAAAAAAAAALALAAAA 937

                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345  739 KLAEERDFHAAVEITLLLGEVLVDAGRREEALEQYRDALALAEANDYRMLIGELLSRLGEAAPDKSRRMEYLQRSLTVFR 818
Cdd:COG3899   938 AAAAAAALAAAAAAAALAAALALAAAAAAAAAAALAAAAAAAAAAAAAAAAAALEAAAAALLALLAAAAAAAAAAAALAA 1017

                         810       820
                  ....*....|....*....|
gi 663531345  819 ELGAQDRMRDVQAKVHRALM 838
Cdd:COG3899  1018 ALLAAALAALAAAAAAAALL 1037
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 552-812 1.76e-17

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 83.63  E-value: 1.76e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345 552 ALELKANIFSLQGRWDEAQEVYKAALEIFAEsddselaRARILSSQADISVTQGDLEGGLAMHREALESfiklgdPQGAA 631
Cdd:COG2956   44 AHLALGNLYRRRGEYDRAIRIHQKLLERDPD-------RAEALLELAQDYLKAGLLDRAEELLEKLLEL------DPDDA 110

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345 632 RTYNNMGFIFRRQRDTKRSIEVYENVEKLLDSEDDYtlvesRIKLAAAFLDMGEMERAREHAFKAHEETlaakdmAQHAR 711
Cdd:COG2956  111 EALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHA-----YCELAELYLEQGDYDEAIEALEKALKLD------PDCAR 179

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345 712 ARVVLGRFYAKTDDPELALHHYSEALEKlaeerdFHAAVEITLLLGEVLVDAGRREEALEQYRDALALAEANDYRMLIGE 791
Cdd:COG2956  180 ALLLLAELYLEQGDYEEAIAALERALEQ------DPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALAD 253

                        250       260
                 ....*....|....*....|.
gi 663531345 792 LLSRLGEAAPDKSRRMEYLQR 812
Cdd:COG2956  254 LLERKEGLEAALALLERQLRR 274
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
550-811 1.01e-14

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 74.66  E-value: 1.01e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345 550 AVALELKANIFSLQGRWDEAQEVYKAALEIFAESDDSELARARILSSqadisvtQGDLEGGLAMHREALEsfIKLGDpqg 629
Cdd:COG0457    8 AEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLR-------LGRYEEALADYEQALE--LDPDD--- 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345 630 aARTYNNMGFIFRRQRDTKRSIEVYENVEKLldsedDYTLVESRIKLAAAFLDMGEMERAREHAFKAHEETLaakdmaQH 709
Cdd:COG0457   76 -AEALNNLGLALQALGRYEEALEDYDKALEL-----DPDDAEALYNLGLALLELGRYDEAIEAYERALELDP------DD 143

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345 710 ARARVVLGRFYAKTDDPELALHHYSEALEKLAEERDFHAAVEITLLLGEVLVDAGRREEALEQYRDALALAEANDYRMLI 789
Cdd:COG0457  144 ADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELL 223

                        250       260
                 ....*....|....*....|..
gi 663531345 790 GELLSRLGEAAPDKSRRMEYLQ 811
Cdd:COG0457  224 LLALALLLALRLAALALYQYRA 245
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
591-812 6.32e-12

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 66.57  E-value: 6.32e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345 591 ARILSSQADISVTQGDLEGGLAMHREALESfiklgDPqGAARTYNNMGFIFRRQRDTKRSIEVYENVEKLldsedDYTLV 670
Cdd:COG0457    8 AEAYNNLGLAYRRLGRYEEAIEDYEKALEL-----DP-DDAEALYNLGLAYLRLGRYEEALADYEQALEL-----DPDDA 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345 671 ESRIKLAAAFLDMGEMERAREHAFKAHEETlaakdmAQHARARVVLGRFYAKTDDPELALHHYSEALEKLAEERDFHAAv 750
Cdd:COG0457   77 EALNNLGLALQALGRYEEALEDYDKALELD------PDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYN- 149

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 663531345 751 eitllLGEVLVDAGRREEALEQYRDALALAEANDYRMLIGELLSRLGEAAPDKSRRMEYLQR 812
Cdd:COG0457  150 -----LGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQA 206
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
549-775 4.51e-10

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 60.79  E-value: 4.51e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345 549 WAVALELKANIFSLQGRWDEAQEVYKAALEIfaesddsELARARILSSQADISVTQGDLEGGLAMHREALESfiklgDPQ 628
Cdd:COG0457   41 DAEALYNLGLAYLRLGRYEEALADYEQALEL-------DPDDAEALNNLGLALQALGRYEEALEDYDKALEL-----DPD 108

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345 629 gAARTYNNMGFIFRRQRDTKRSIEVYENVEKLldsedDYTLVESRIKLAAAFLDMGEMERAREHAFKAHEETLAAKDmaq 708
Cdd:COG0457  109 -DAEALYNLGLALLELGRYDEAIEAYERALEL-----DPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALL--- 179

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 663531345 709 hARARVVLGRFYAKTDDPELALHHYSEALEKLAEERDFHAAVEITLLLGEVLVDAGRREEALEQYRD 775
Cdd:COG0457  180 -AAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYRA 245
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 538-836 1.05e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 58.85  E-value: 1.05e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345 538 ALDEDQVSSQAWAVALELKANIFSLQGRWDEAQEVYKAALEIFAESDDSELARARILSSQADISVTQGDLEGGLAMHRE- 616
Cdd:COG3914    4 AALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLEl 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345 617 ALESFIKLGDPQGAARTYnnmgfifrrqrdtkrsievyenvEKLLDSEDDYtlVESRIKLAAAFLDMGEMERAREHAFKA 696
Cdd:COG3914   84 AALLLQALGRYEEALALY-----------------------RRALALNPDN--AEALFNLGNLLLALGRLEEALAALRRA 138

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345 697 heetLAAKdmAQHARARVVLGRFYAKTDDPELALHHYSEALEKLAEERDFHaaveitLLLGEVLVDAGRREEALEQYRDA 776
Cdd:COG3914  139 ----LALN--PDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEAL------NNLGNALQDLGRLEEAIAAYRRA 206

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 663531345 777 LALA-EANDYRMLIGELLSRLG--EAAPDKSRRMEYLQR---SLTVFRELGAQDRMRDVQAKVHRA 836
Cdd:COG3914  207 LELDpDNADAHSNLLFALRQACdwEVYDRFEELLAALARgpsELSPFALLYLPDDDPAELLALARA 272
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 670-800 1.47e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 51.35  E-value: 1.47e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345 670 VESRIKLAAAFLDMGEMERARehafKAHEETLAAKDmaQHARARVVLGRFYAKTDDPELALHHYSEALEKLAEERdfhaa 749
Cdd:COG4783    4 AEALYALAQALLLAGDYDEAE----ALLEKALELDP--DNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEP----- 72

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 663531345 750 vEITLLLGEVLVDAGRREEALEQYRDALALAEAN-DYRMLIGELLSRLGEAA 800
Cdd:COG4783   73 -EARLNLGLALLKAGDYDEALALLEKALKLDPEHpEAYLRLARAYRALGRPD 123
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 476-741 2.73e-07

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 54.23  E-value: 2.73e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345 476 RDELHGKAVDWYRSRRSASEEQIEFLYHLSNSGNAEELGKEVETTGAELVQTGHIELLGILEALDEDQVSSQAWAVA--L 553
Cdd:COG3914    2 AAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAalL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345 554 ELKANIFSLQGRWDEAQEVYKAALEIFAESDDSELARARILSSqadisvtQGDLEGGLAMHREALESfiklgDPqGAART 633
Cdd:COG3914   82 ELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLA-------LGRLEEALAALRRALAL-----NP-DFAEA 148

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345 634 YNNMGFIFRRQRDTKRSIEVYENVEKLldsedDYTLVESRIKLAAAFLDMGEMERAREHAFKAHE---ETLAAKDMAQHA 710
Cdd:COG3914  149 YLNLGEALRRLGRLEEAIAALRRALEL-----DPDNAEALNNLGNALQDLGRLEEAIAAYRRALEldpDNADAHSNLLFA 223

                        250       260       270
                 ....*....|....*....|....*....|.
gi 663531345 711 RARVVLGRFYAKTDDPELALHHYSEALEKLA 741
Cdd:COG3914  224 LRQACDWEVYDRFEELLAALARGPSELSPFA 254
COG1672 COG1672
Predicted ATPase, archaeal AAA+ ATPase superfamily [General function prediction only];
175-402 2.80e-07

Predicted ATPase, archaeal AAA+ ATPase superfamily [General function prediction only];


Pssm-ID: 441278 [Multi-domain]  Cd Length: 324  Bit Score: 53.38  E-value: 2.80e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345 175 FFGRENELKTMMDLIDA-RSTTILVPGIAGIGKTALagkmIEMFTHKRNLLYHRVQDWEG-------SRAFLESCGEWLS 246
Cdd:COG1672    2 FFDREEELEELEKLYESdGGELVVVYGRRRVGKTSL----IKEFLKEKPAIYFDAREESEreslrdfSEALAEALGDPLS 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345 247 SIGDDSLNDYLtatpipsasisvDLIVEALATVPALIIVD---DLHKVADDVLySIVRGLTQRMDDLEETGLVLFSrSFQ 323
Cdd:COG1672   78 KKEFESWEEAF------------EYLAELAEGKRLVIVIDefqYLVKLDPSLL-SILQYLWDELLSDSNVSLILCG-SSI 143

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345 324 SVV---------PLRdaeGNITtLVVPLDGLSREACRNFLPSLEPVDDATFHHIYGLSRGHPLVLTLInrGSIGSTFHET 394
Cdd:COG1672  144 GMMeellldyksPLY---GRRT-GEIKLKPFSFEESKEFLPEGFEYSEEELEEAYSVLGGIPGYLTLF--GNEGKSLEEN 217


                 ....*...
gi 663531345 395 LEMYVEQE 402
Cdd:COG1672  218 IEELLLSP 225
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 670-796 9.15e-07

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 48.85  E-value: 9.15e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345 670 VESRIKLAAAFLDMGEMERAREHAFKAHEetLAAKDmaqhARARVVLGRFYAKTDDPELALHHYSEALEKLAEERDFHaa 749
Cdd:COG4235   17 AEGWLLLGRAYLRLGRYDEALAAYEKALR--LDPDN----ADALLDLAEALLAAGDTEEAEELLERALALDPDNPEAL-- 88

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 663531345 750 veitLLLGEVLVDAGRREEALEQYRDALALAEANDYRMLIGELLSRL 796
Cdd:COG4235   89 ----YLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASIAEA 131
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 628-783 9.88e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 49.03  E-value: 9.88e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345 628 QGAARTYNNMGFIFRRQRDTKRSIEVYEnveKLLDSEDDYtlVESRIKLAAAFLDMGEMERAREHAfkaHEetlAAKDMA 707
Cdd:COG4783    1 AACAEALYALAQALLLAGDYDEAEALLE---KALELDPDN--PEAFALLGEILLQLGDLDEAIVLL---HE---ALELDP 69

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 663531345 708 QHARARVVLGRFYAKTDDPELALHHYSEALEKLAEERDFHaaveitLLLGEVLVDAGRREEALEQYRDALALAEAN 783
Cdd:COG4783   70 DEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAY------LRLARAYRALGRPDEAIAALEKALELDPDD 139
TPR_12 pfam13424
Tetratricopeptide repeat;
710-782 1.48e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 46.61  E-value: 1.48e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 663531345  710 ARARVVLGRFYAKTDDPELALHHYSEALE--KLAEERDFHAAVEITLLLGEVLVDAGRREEALEQYRDALALAEA 782
Cdd:pfam13424   3 ATALNNLAAVLRRLGRYDEALELLEKALEiaRRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
COG3903 COG3903
Predicted ATPase [General function prediction only];
407-831 3.18e-06

Predicted ATPase [General function prediction only];


Pssm-ID: 443109 [Multi-domain]  Cd Length: 933  Bit Score: 51.17  E-value: 3.18e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345 407 LSGAEKRLLGALAIFREPMPLEA------LSGQDLETNLLDDLVEKGLARQADSEM---YDVHDLIREF-LSRSLDATTR 476
Cdd:COG3903  408 LSPAERRLLRRLSVFPGGFTLEAaeavcgGDGPADVLDLLAALVDKSLLEVEGGGGgprYRLLETVREYaAERLAEAGER 487

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345 477 DELHGKAVDWYRSRRSASEeqieflyhlsnsgnaEELGKEVETTGAELVQTGHIELLGILEALDEDQVSSQAWAVALELk 556
Cdd:COG3903  488 AAARRRHADYYLALAERAA---------------AELRGPDQLAWLARLDAEHDNLRAALRWALAHGDAELALRLAAAL- 551

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345 557 ANIFSLQGRWDEAQEVYKAALEIFAESDDSELARARILSSQADisvtqGDLEGGLAMHREALESFIKLGDPQGAARTYNN 636
Cdd:COG3903  552 APFWFLRGLLREGRRWLERALAAAGEAAAALAAAAALAAAAAA-----ARAAAAAAAAAAAAAAAAAAAAAAAAAALLLL 626

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345 637 MGFIFRRQRDTKRSIEVYENVEKLLDSEDDYTLVESRIKLAAAFLDMGEMERAREHAFKAHEETLAAKDMAQHARARVVL 716
Cdd:COG3903  627 AALAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAALAAAAAAAAAAAAAAAAAAAALAAAAAALAAAAAAAALAAA 706

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345 717 GRFYAKTDDPELALHHYSEALEKLAEERDFHAAVEITLLLGEVLVDAGRREEALEQYRDALALAEANDYRMLIGELLSRL 796
Cdd:COG3903  707 AAAALAAAAAAAAAAAAAAALLAAAAAAALAAAAAAAALALAAAAAAAAAAAAAAALAAAAAAAALAALLLALAAAAAAL 786

                        410       420       430
                 ....*....|....*....|....*....|....*
gi 663531345 797 GEAAPDKSRRMEYLQRSLTVFRELGAQDRMRDVQA 831
Cdd:COG3903  787 AAAAAAAAAAAAAAAAAAAAAAAAAAAAALAAAAA 821
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 708-836 3.74e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 46.92  E-value: 3.74e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345 708 QHARARVVLGRFYAKTDDPELALHHYSEALEKLAEERDFHAAveitllLGEVLVDAGRREEALEQYRDALALAEAN-DYR 786
Cdd:COG4235   15 NDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLD------LAEALLAAGDTEEAEELLERALALDPDNpEAL 88

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 663531345 787 MLIGELLSRLGeaapDKSRRMEYLQRSLtvfRELGAQDRMRDVQAKVHRA 836
Cdd:COG4235   89 YLLGLAAFQQG----DYAEAIAAWQKLL---ALLPADAPARLLEASIAEA 131
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 537-677 4.32e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 46.92  E-value: 4.32e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345 537 EALDEDQVSSQAWAvaleLKANIFSLQGRWDEAQEVYKAALEIFAESddselarARILSSQADISVTQGDLEGGLAMHRE 616
Cdd:COG4235    8 QALAANPNDAEGWL----LLGRAYLRLGRYDEALAAYEKALRLDPDN-------ADALLDLAEALLAAGDTEEAEELLER 76

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 663531345 617 ALESfiklgDPQgAARTYNNMGFIFRRQRDTKRSIEVYENVEKLLDSEDDYTLVESRIKLA 677
Cdd:COG4235   77 ALAL-----DPD-NPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASIAEA 131
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
664-798 7.93e-06

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 48.08  E-value: 7.93e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345 664 EDDYTLVESRIKLAAAFLDMGEMERAREHAFKAHEETlaakdmAQHARARVVLGRFYAKTDDPELALHHYSEALEKLAEE 743
Cdd:COG0457    2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELD------PDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD 75

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 663531345 744 RDFHAAveitllLGEVLVDAGRREEALEQYRDALALAEAN-DYRMLIGELLSRLGE 798
Cdd:COG0457   76 AEALNN------LGLALQALGRYEEALEDYDKALELDPDDaEALYNLGLALLELGR 125
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 707-814 1.28e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 45.57  E-value: 1.28e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345 707 AQHARARVVLGRFYAKTDDPELALHHYSEALEKLAEERDFHAaveitlLLGEVLVDAGRREEALEQYRDALALAEAN-DY 785
Cdd:COG4783    1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFA------LLGEILLQLGDLDEAIVLLHEALELDPDEpEA 74

                         90       100
                 ....*....|....*....|....*....
gi 663531345 786 RMLIGELLSRLGeaapDKSRRMEYLQRSL 814
Cdd:COG4783   75 RLNLGLALLKAG----DYDEALALLEKAL 99
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 550-698 1.32e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 45.57  E-value: 1.32e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345 550 AVALELKANIFSLQGRWDEAQEVYKAALEifaESDDSELARARIlssqADISVTQGDLEGGLAMHREALEsfiklGDPQg 629
Cdd:COG4783    4 AEALYALAQALLLAGDYDEAEALLEKALE---LDPDNPEAFALL----GEILLQLGDLDEAIVLLHEALE-----LDPD- 70

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 663531345 630 AARTYNNMGFIFRRQRDTKRSIEVYenvEKLLDSEDDYtlVESRIKLAAAFLDMGEMERAREHAFKAHE 698
Cdd:COG4783   71 EPEARLNLGLALLKAGDYDEALALL---EKALKLDPEH--PEAYLRLARAYRALGRPDEAIAALEKALE 134
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 589-743 1.40e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 45.57  E-value: 1.40e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345 589 ARARILSSQADISVTQGDLEGGLAMHREALESfiklgDPQgAARTYNNMGFIFRRQRDTKRSIEVYENVEKLLDSEddyt 668
Cdd:COG4783    2 ACAEALYALAQALLLAGDYDEAEALLEKALEL-----DPD-NPEAFALLGEILLQLGDLDEAIVLLHEALELDPDE---- 71

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 663531345 669 lVESRIKLAAAFLDMGEMERAREHAFKAHEETlaakdmAQHARARVVLGRFYAKTDDPELALHHYSEALEKLAEE 743
Cdd:COG4783   72 -PEARLNLGLALLKAGDYDEALALLEKALKLD------PEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
TPR_12 pfam13424
Tetratricopeptide repeat;
550-623 2.12e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 43.14  E-value: 2.12e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 663531345  550 AVALELKANIFSLQGRWDEAQEVYKAALEIFAESDDSE-LARARILSSQADISVTQGDLEGGLAMHREALESFIK 623
Cdd:pfam13424   3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDhPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
670-800 2.15e-05

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 46.80  E-value: 2.15e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345 670 VESRIKLAAAFLDMGEMERAREHAFKAheetlAAKDMAQHARARVVLGRFYAKTDDPELALhhysEALEKLAEERDFHAA 749
Cdd:COG4700   89 VQNRVRLADALLELGRYDEAIELYEEA-----LTGIFADDPHILLGLAQALFELGRYAEAL----ETLEKLIAKNPDFKS 159

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 663531345 750 VEITLLLGEVLVDAGRREEALEQYRDALAL---AEAndyRMLIGELLSRLGEAA 800
Cdd:COG4700  160 SDAHLLYARALEALGDLEAAEAELEALARRysgPEA---RYRYAKFLARQGRTA 210
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 522-739 7.56e-05

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 46.52  E-value: 7.56e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345 522 AELVQTGHIELLGILEALDEDQVSSQAWAVALELK----------ANIFSLQGRWDEAQEVYKAALEIFAESDDSELARA 591
Cdd:COG3914   74 LLLLAALLELAALLLQALGRYEEALALYRRALALNpdnaealfnlGNLLLALGRLEEALAALRRALALNPDFAEAYLNLG 153

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345 592 RILSSqadisvtQGDLEGGLAMHREALESfiklgDPQgAARTYNNMGFIFRRQRDTKRSIEVYENVEKLLDSEDDYtlve 671
Cdd:COG3914  154 EALRR-------LGRLEEAIAALRRALEL-----DPD-NAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADA---- 216

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 663531345 672 sRIKLAAAFLDMGEMErarehAFKAHEETLAAkdMAQHARARVVLGRFYAKTDDPE--LALH-HYSEALEK 739
Cdd:COG3914  217 -HSNLLFALRQACDWE-----VYDRFEELLAA--LARGPSELSPFALLYLPDDDPAelLALArAWAQLVAA 279
TPR_MalT pfam17874
MalT-like TPR region; This entry contains a series of TPR repeats.
 555-787 1.16e-04

MalT-like TPR region; This entry contains a series of TPR repeats.


Pssm-ID: 436107 [Multi-domain]  Cd Length: 336  Bit Score: 44.99  E-value: 1.16e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345  555 LKANIFSLQGRWDEAQEVYKAALEIFaeSDDSELARARILSSQADISVTQGDLEGGLAMHREALESFIKLGDPQGAArty 634
Cdd:pfam17874   6 LRAQLAISKGDAERALELAEQALALL--PEDDLLARGLATFVLGEAYLCLGDLDAALQAMREAEALARRADSPHVTL--- 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345  635 nnmgFIFRRQrdtkrsIEVYENVEKLLDSEDDYtlvesriklaaafldmgemERAREHAFKAHEETLAAkdmaqHARARV 714
Cdd:pfam17874  81 ----WALLQQ------GEILRAQGRLHQALETY-------------------QQALQLARDHGLQHLPL-----HGFLLV 126

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 663531345  715 VLGRFYAKTDDPELALHHYSEALeKLAEERDFHAAVEITLLLGEVLVDAGRREEALEQYRDALALAEANDYRM 787
Cdd:pfam17874 127 GLADLLYEWNDLEEAEQHAQQGI-QLGRQWEPDAAVDAYVLLARIALAQGELEEALTLLRRAELLARQSFFHV 198
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 530-812 1.87e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 45.07  E-value: 1.87e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345  530 IELLGILEALDEDQvssqaWAVALELKANIFSLQGRWDEAQEVYKAALEIFAESDDSELARARILssqadisVTQGDLEG 609
Cdd:TIGR02917 110 LDELPGKTLLDDEG-----AAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLA-------LAENRFDE 177

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345  610 GLAMHREALEsfiklGDPqGAARTYNNMGFIFRRQRDTKRSIEVYENVEKLldsedDYTLVESRIKLAAAFLDMGEMERA 689
Cdd:TIGR02917 178 ARALIDEVLT-----ADP-GNVDALLLKGDLLLSLGNIELALAAYRKAIAL-----RPNNIAVLLALATILIEAGEFEEA 246

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345  690 REHA------FKAHEETLAAKDMAQ-----HARARVVL------------GRFYAKT-----DDPELALHHYSEALEKLA 741
Cdd:TIGR02917 247 EKHAdallkkAPNSPLAHYLKALVDfqkknYEDARETLqdalksapeylpALLLAGAseyqlGNLEQAYQYLNQILKYAP 326

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 663531345  742 eerDFHAAVeitLLLGEVLVDAGRREEALEQYRDALALAEANdyrmliGELLSRLGE---AAPDKSRRMEYLQR 812
Cdd:TIGR02917 327 ---NSHQAR---RLLASIQLRLGRVDEAIATLSPALGLDPDD------PAALSLLGEaylALGDFEKAAEYLAK 388
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 537-655 2.92e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 41.72  E-value: 2.92e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345 537 EALDEDQVSSQAWAvaleLKANIFSLQGRWDEAQEVYKAALEIFAESDDSELARARILSSqadisvtQGDLEGGLAMHRE 616
Cdd:COG4783   29 KALELDPDNPEAFA----LLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK-------AGDYDEALALLEK 97

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 663531345 617 ALESfiklgDPQgAARTYNNMGFIFRRQRDTKRSIEVYE 655
Cdd:COG4783   98 ALKL-----DPE-HPEAYLRLARAYRALGRPDEAIAALE 130
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 536-783 6.89e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 43.53  E-value: 6.89e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345  536 LEALDEDQvssqawAVALELKANIFSLQGRWDEAQEVYKAALEIFAESDDSELARARILSSQADISVTQGDLEGGLAMHR 615
Cdd:TIGR02917 627 LLALQPDS------ALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP 700

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345  616 EALESFIKLGDpqgaartynnmgfIFRRQRDTKRSIEVYENVEKLLDSEDdytlveSRIKLAAAFLDMGEMERArehafk 695
Cdd:TIGR02917 701 KAALGFELEGD-------------LYLRQKDYPAAIQAYRKALKRAPSSQ------NAIKLHRALLASGNTAEA------ 755

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345  696 ahEETLAA--KDMAQHARARVVLGRFYAKTDDPELALHHYSEALEK-------------LAEERDFHAAVE--------- 751
Cdd:TIGR02917 756 --VKTLEAwlKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKapdnavvlnnlawLYLELKDPRALEyaeralkla 833

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 663531345  752 -----ITLLLGEVLVDAGRREEALEQYRDALALAEAN 783
Cdd:TIGR02917 834 pnipaILDTLGWLLVEKGEADRALPLLRKAVNIAPEA 870
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 557-800 1.05e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 42.76  E-value: 1.05e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345  557 ANIFSLQGRWDEAQEVYKAALEIFAESDDSELARARILSSQADISVTQGDLEGGLAMHREALE-------SFIKLGDPQG 629
Cdd:TIGR02917 506 ARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEpalalaqYYLGKGQLKK 585

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345  630 A---ARTYNN-----------MGFIFRRQRDTKRSIEVYENVEKLLDSEddytlVESRIKLAAAFLDMGEMERAREHAFK 695
Cdd:TIGR02917 586 AlaiLNEAADaapdspeawlmLGRAQLAAGDLNKAVSSFKKLLALQPDS-----ALALLLLADAYAVMKNYAKAITSLKR 660

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345  696 AheetLAAKdmAQHARARVVLGRFYAKTDDPELALHHYSEalekLAEERDFHAAveITLLLGEVLVDAGRREEALEQYRD 775
Cdd:TIGR02917 661 A----LELK--PDNTEAQIGLAQLLLAAKRTESAKKIAKS----LQKQHPKAAL--GFELEGDLYLRQKDYPAAIQAYRK 728

                         250       260
                  ....*....|....*....|....*
gi 663531345  776 ALALAEANDYRMLIGELLSRLGEAA 800
Cdd:TIGR02917 729 ALKRAPSSQNAIKLHRALLASGNTA 753
PRK11788 PRK11788
tetratricopeptide repeat protein; Provisional
 640-777 1.26e-03

tetratricopeptide repeat protein; Provisional


Pssm-ID: 236983 [Multi-domain]  Cd Length: 389  Bit Score: 42.10  E-value: 1.26e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345 640 IFRRQRDTKRSIEVYENVEKLLDSEDDYTLVESRIKLAAAFLDMGEMERAREHAFKAheetLAAKdmAQHARARVVLGRF 719
Cdd:PRK11788 150 IYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKA----LAAD--PQCVRASILLGDL 223

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345 720 YAKTDDPELALHHY-----------SEALEKLAE-------ERDF----------HAAVEITLLLGEVLVDAGRREEALE 771
Cdd:PRK11788 224 ALAQGDYAAAIEALerveeqdpeylSEVLPKLMEcyqalgdEAEGleflrraleeYPGADLLLALAQLLEEQEGPEAAQA 303


                 ....*.
gi 663531345 772 QYRDAL 777
Cdd:PRK11788 304 LLREQL 309
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
679-780 1.53e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 38.61  E-value: 1.53e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345 679 AFLDMGEMERAREHAFKAheetlaAKDMAQHARARVVLGRFYAKTDDPELALHhYSEALEKLAEErdfhaaVEITLLLGE 758
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKA------LELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNN------AEALLNLAE 67

                         90       100
                 ....*....|....*....|..
gi 663531345 759 VLVDAGRREEALEQYRDALALA 780
Cdd:COG3063   68 LLLELGDYDEALAYLERALELD 89
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 658-780 1.88e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 39.94  E-value: 1.88e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345 658 EKLLDSEDDYTLVESRIKLAAAFLDMGEMERAREHAFKAHEETlaakdmAQHARARVVLGRFYAKTDDPELALHHYSEAL 737
Cdd:COG5010   42 LAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLD------PNNPELYYNLALLYSRSGDKDEAKEYYEKAL 115

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 663531345 738 EKLAEErdfhaaVEITLLLGEVLVDAGRREEALEQYRDALALA 780
Cdd:COG5010  116 ALSPDN------PNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
TPR_12 pfam13424
Tetratricopeptide repeat;
590-655 3.51e-03

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 36.98  E-value: 3.51e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 663531345  590 RARILSSQADISVTQGDLEGGLAMHREALESFIKLGDPQ--GAARTYNNMGFIFRRQRDTKRSIEVYE 655
Cdd:pfam13424   2 VATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDhpLTATTLLNLGRLYLELGRYEEALELLE 69
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 536-782 3.97e-03

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 40.28  E-value: 3.97e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345 536 LEALDEDQVSSQAWAVALELKANIFSLQGRWDEAQEVYKAaLEIFAESDDSELARARILSSQADISVTQGDLEGgLAMHR 615
Cdd:COG3071  105 LATLEALRAGAPRHPQVLRLLLQAYRQLGDWEELLELLPA-LRKHKALSAEEAQALERRAYLGLLRQAARDAEA-LKALW 182

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345 616 EALESFIKLgDPQGAARtynnmgfIFRRQRDTKRSIEVYENVEKLLDSEDDYTLV----ESRIKLAAAFLdmgemERArE 691
Cdd:COG3071  183 KALPRAERR-DPELAAA-------YARALIALGDHDEAERLLREALKRQWDPRLVrlygRLQGGDPAKQL-----KRA-E 248

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345 692 HAFKAHEEtlaakdmaqHARARVVLGRFYAKTDDPELALHHYSEALEklaeerdFHAAVEITLLLGEVLVDAGRREEALE 771
Cdd:COG3071  249 KWLKKHPN---------DPDLLLALGRLCLRNQLWGKAREYLEAALA-------LRPSAEAYAELARLLEQLGDPEEAAE 312

                        250
                 ....*....|.
gi 663531345 772 QYRDALALAEA 782
Cdd:COG3071  313 HYRKALALALG 323
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
598-741 4.55e-03

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 39.87  E-value: 4.55e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345 598 ADISVTQGDLEGGLAMHREALESFIKlGDPQ---GAARTYNNmgfifrrqrdTKRSIEVYENVEKLLDSEDDYTLVESRI 674
Cdd:COG4700   96 ADALLELGRYDEAIELYEEALTGIFA-DDPHillGLAQALFE----------LGRYAEALETLEKLIAKNPDFKSSDAHL 164

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 663531345 675 KLAAAFLDMGEMERAREHaFKAHEETLAakdmaqHARARVVLGRFYAKTDDPELALHHYSEALEKLA 741
Cdd:COG4700  165 LYARALEALGDLEAAEAE-LEALARRYS------GPEARYRYAKFLARQGRTAEAKELLEEILDEAK 224
YfgM COG2976
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal ...
 676-789 4.92e-03

Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal transduction mechanisms];


Pssm-ID: 442215 [Multi-domain]  Cd Length: 207  Bit Score: 39.07  E-value: 4.92e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345 676 LAAAFLDMGEMERAREH----AFKAHEETLaaKDMAQHARARVvlgrfyaktddpELALHHYSEALEKLAEERD--FHAA 749
Cdd:COG2976   96 LAKAAVDAGDLDKAAAQlqwvLDNAKDPAL--KALARLRLARV------------LLAQKKYDEALATLDAVKPeaFAAL 161

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 663531345 750 VEitLLLGEVLVDAGRREEALEQYRDALA-LAEANDYRMLI 789
Cdd:COG2976  162 YA--ELRGDILLAQGDKAEARAAYQKALAaLPEDAPLRQLL 200
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 660-800 8.02e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 38.02  E-value: 8.02e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345 660 LLDSEDDYTLVESRIKLAAAFLDMGEMERAREHAFKAHEETLAAKDMAQHARARVVLGRFYAKTDDPELALHHYSEALEK 739
Cdd:COG5010    4 LEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL 83

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 663531345 740 LAEERDFHAAveitllLGEVLVDAGRREEALEQYRDALALAEAN-DYRMLIGELLSRLGEAA 800
Cdd:COG5010   84 DPNNPELYYN------LALLYSRSGDKDEAKEYYEKALALSPDNpNAYSNLAALLLSLGQDD 139
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 555-784 9.23e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 39.68  E-value: 9.23e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345  555 LKANIFSLQGRWDEAQEVYKAALEIfaesdDSELARARIlsSQADISVTQGDLEGGLAMHREALESFIK-LGDPQGAART 633
Cdd:TIGR02917 470 LLGAIYLGKGDLAKAREAFEKALSI-----EPDFFPAAA--NLARIDIQEGNPDDAIQRFEKVLTIDPKnLRAILALAGL 542

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663531345  634 YNNMGfifrrqrdtkRSIEVYENVEKLldSEDDYTLVESRIKLAAAFLDMGEMERAREHAFKAheeTLAAKDmaqHARAR 713
Cdd:TIGR02917 543 YLRTG----------NEEEAVAWLEKA--AELNPQEIEPALALAQYYLGKGQLKKALAILNEA---ADAAPD---SPEAW 604

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 663531345  714 VVLGRFYAKTDDPELALhhysEALEKLAEERDFHAavEITLLLGEVLVDAGRREEALEQYRDALALAEAND 784
Cdd:TIGR02917 605 LMLGRAQLAAGDLNKAV----SSFKKLLALQPDSA--LALLLLADAYAVMKNYAKAITSLKRALELKPDNT 669
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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