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Conserved domains on  [gi|667638082|gb|AIG59641|]
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RpoB, partial [Bisgaardia genomosp. 1]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ricin_B_lectin super family cl47023
Ricin-type beta-trefoil lectin domain;
1-172 8.62e-138

Ricin-type beta-trefoil lectin domain;


The actual alignment was detected with superfamily member PRK00405:

Pssm-ID: 481363 [Multi-domain]  Cd Length: 1112  Bit Score: 410.65  E-value: 8.62e-138
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667638082    1 LSQFMDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHATHYGRVCPIETPEGPNIGLINSLSVYARTNDYGFLETP 80
Cdd:PRK00405  432 LSQFMDQTNPLSELTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATYARVNEYGFIETP 511

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667638082   81 YRKVVDGQVTEEIEYLSAIEEGKYVIAQANSNLDENFRFTDAFVTARgEHGESGLYRPDEIHYMDVSTQQVVSVAAALIP 160
Cdd:PRK00405  512 YRKVVDGKVTDEIVYLTADEEDNYVIAQANAPLDEDGRFVDELVTAR-YKGEFVLVPPEEVDYMDVSPKQVVSVAASLIP 590

                         170
                  ....*....|..
gi 667638082  161 FLEHDDANRALM 172
Cdd:PRK00405  591 FLEHDDANRALM 602
 
Name Accession Description Interval E-value
rpoB PRK00405
DNA-directed RNA polymerase subunit beta; Reviewed
 1-172 8.62e-138

DNA-directed RNA polymerase subunit beta; Reviewed


Pssm-ID: 234749 [Multi-domain]  Cd Length: 1112  Bit Score: 410.65  E-value: 8.62e-138
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667638082    1 LSQFMDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHATHYGRVCPIETPEGPNIGLINSLSVYARTNDYGFLETP 80
Cdd:PRK00405  432 LSQFMDQTNPLSELTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATYARVNEYGFIETP 511

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667638082   81 YRKVVDGQVTEEIEYLSAIEEGKYVIAQANSNLDENFRFTDAFVTARgEHGESGLYRPDEIHYMDVSTQQVVSVAAALIP 160
Cdd:PRK00405  512 YRKVVDGKVTDEIVYLTADEEDNYVIAQANAPLDEDGRFVDELVTAR-YKGEFVLVPPEEVDYMDVSPKQVVSVAASLIP 590

                         170
                  ....*....|..
gi 667638082  161 FLEHDDANRALM 172
Cdd:PRK00405  591 FLEHDDANRALM 602
RpoB COG0085
DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]; DNA-directed RNA ...
 1-172 1.97e-116

DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]; DNA-directed RNA polymerase, beta subunit/140 kD subunit is part of the Pathway/BioSystem: RNA polymerase


Pssm-ID: 439855 [Multi-domain]  Cd Length: 1001  Bit Score: 352.49  E-value: 1.97e-116
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667638082    1 LSQFMDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHATHYGRVCPIETPEGPNIGLINSLSVYARTNDYGFLETP 80
Cdd:COG0085   371 LSQFMDQTNPLSELTHKRRLSALGPGGLSRERAGFEVRDVHPSHYGRMCPIETPEGPNIGLIGSLALYARVNEYGFIETP 450

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667638082   81 YRKVVDGQVTEEIEYLSAIEEGKYVIAQANSNLDENFRFTDAFVTARgEHGESGLYRPDEIHYMDVSTQQVVSVAAALIP 160
Cdd:COG0085   451 YRKVENGKVTDEIEYLTADEEENYYIAQANAPLDEDGNFLEERVLVR-YRGEEVLVPPEEVDYMDVSPKQIVSVATSLIP 529

                         170
                  ....*....|..
gi 667638082  161 FLEHDDANRALM 172
Cdd:COG0085   530 FLEHDDANRALM 541
rpoB TIGR02013
DNA-directed RNA polymerase, beta subunit; This model describes orthologs of the beta subunit ...
 1-172 2.24e-113

DNA-directed RNA polymerase, beta subunit; This model describes orthologs of the beta subunit of Bacterial RNA polymerase. The core enzyme consists of two alpha chains, one beta chain, and one beta' subunit. [Transcription, DNA-dependent RNA polymerase]


Pssm-ID: 273928 [Multi-domain]  Cd Length: 1065  Bit Score: 345.49  E-value: 2.24e-113
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667638082     1 LSQFMDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHATHYGRVCPIETPEGPNIGLINSLSVYARTNDYGFLETP 80
Cdd:TIGR02013  387 LSQFMDQTNPLAELTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLSTYARVNEYGFIETP 466

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667638082    81 YRKVVDGQV--TEEIEYLSAIEEGKYVIAQANSNLDENFRFTDAFVTARGEhGESGLYRPDEIHYMDVSTQQVVSVAAAL 158
Cdd:TIGR02013  467 YRKVKDGKVvvTDEIDYLTADEEDNYVIAQANAPLDENGRFVEDLVVARYR-GEITLVSPDQVDYMDVSPKQVVSVAASL 545

                          170
                   ....*....|....
gi 667638082   159 IPFLEHDDANRALM 172
Cdd:TIGR02013  546 IPFLEHDDANRALM 559
RNA_pol_B_RPB2 cd00653
RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. ...
 1-172 2.05e-55

RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase complex contains two related members of this family, in each case they are the two largest subunits.The clamp is a mobile structure that grips DNA during elongation.


Pssm-ID: 238353 [Multi-domain]  Cd Length: 866  Bit Score: 186.62  E-value: 2.05e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667638082   1 LSQFMDQNNPLSEVTHKRRISAlgpGGLTRERAGFEVRDVHATHYGRVCPIETPEGPNIGLINSLSVYARTNdyGFLETP 80
Cdd:cd00653  313 LSQVLDRLNPLSELSHKRRISS---LGLFRERKGFEVRDLHPSHWGRICPIETPEGENCGLVKNLALMARIS--GRIERP 387

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667638082  81 YRKVVdgqvteeieylsaieegkyviaqansnldenfrftdafvtargehgesglyrpDEIHYMDVSTQQVVSVAAALIP 160
Cdd:cd00653  388 YRIVE-----------------------------------------------------KEVTHIEISPSQILSVAASLIP 414

                        170
                 ....*....|..
gi 667638082 161 FLEHDDANRALM 172
Cdd:cd00653  415 FPEHNQSPRNLY 426
RNA_pol_Rpb2_3 pfam04565
RNA polymerase Rpb2, domain 3; RNA polymerases catalyze the DNA dependent polymerization of ...
 3-70 2.88e-39

RNA polymerase Rpb2, domain 3; RNA polymerases catalyze the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 3, s also known as the fork domain and is proximal to catalytic site.


Pssm-ID: 428011 [Multi-domain]  Cd Length: 67  Bit Score: 127.64  E-value: 2.88e-39
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 667638082    3 QFMDQNNPLSEVTHKRRISAlGPGGLTRERAGFEVRDVHATHYGRVCPIETPEGPNIGLINSLSVYAR 70
Cdd:pfam04565   1 QVLDRTNYLSTLSHLRRVNS-PRGGLFREMKTTEVRDLHPSHWGRICPVETPEGPNCGLVKHLALYAR 67
 
Name Accession Description Interval E-value
rpoB PRK00405
DNA-directed RNA polymerase subunit beta; Reviewed
 1-172 8.62e-138

DNA-directed RNA polymerase subunit beta; Reviewed


Pssm-ID: 234749 [Multi-domain]  Cd Length: 1112  Bit Score: 410.65  E-value: 8.62e-138
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667638082    1 LSQFMDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHATHYGRVCPIETPEGPNIGLINSLSVYARTNDYGFLETP 80
Cdd:PRK00405  432 LSQFMDQTNPLSELTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATYARVNEYGFIETP 511

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667638082   81 YRKVVDGQVTEEIEYLSAIEEGKYVIAQANSNLDENFRFTDAFVTARgEHGESGLYRPDEIHYMDVSTQQVVSVAAALIP 160
Cdd:PRK00405  512 YRKVVDGKVTDEIVYLTADEEDNYVIAQANAPLDEDGRFVDELVTAR-YKGEFVLVPPEEVDYMDVSPKQVVSVAASLIP 590

                         170
                  ....*....|..
gi 667638082  161 FLEHDDANRALM 172
Cdd:PRK00405  591 FLEHDDANRALM 602
RpoB COG0085
DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]; DNA-directed RNA ...
 1-172 1.97e-116

DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]; DNA-directed RNA polymerase, beta subunit/140 kD subunit is part of the Pathway/BioSystem: RNA polymerase


Pssm-ID: 439855 [Multi-domain]  Cd Length: 1001  Bit Score: 352.49  E-value: 1.97e-116
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667638082    1 LSQFMDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHATHYGRVCPIETPEGPNIGLINSLSVYARTNDYGFLETP 80
Cdd:COG0085   371 LSQFMDQTNPLSELTHKRRLSALGPGGLSRERAGFEVRDVHPSHYGRMCPIETPEGPNIGLIGSLALYARVNEYGFIETP 450

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667638082   81 YRKVVDGQVTEEIEYLSAIEEGKYVIAQANSNLDENFRFTDAFVTARgEHGESGLYRPDEIHYMDVSTQQVVSVAAALIP 160
Cdd:COG0085   451 YRKVENGKVTDEIEYLTADEEENYYIAQANAPLDEDGNFLEERVLVR-YRGEEVLVPPEEVDYMDVSPKQIVSVATSLIP 529

                         170
                  ....*....|..
gi 667638082  161 FLEHDDANRALM 172
Cdd:COG0085   530 FLEHDDANRALM 541
rpoB TIGR02013
DNA-directed RNA polymerase, beta subunit; This model describes orthologs of the beta subunit ...
 1-172 2.24e-113

DNA-directed RNA polymerase, beta subunit; This model describes orthologs of the beta subunit of Bacterial RNA polymerase. The core enzyme consists of two alpha chains, one beta chain, and one beta' subunit. [Transcription, DNA-dependent RNA polymerase]


Pssm-ID: 273928 [Multi-domain]  Cd Length: 1065  Bit Score: 345.49  E-value: 2.24e-113
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667638082     1 LSQFMDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHATHYGRVCPIETPEGPNIGLINSLSVYARTNDYGFLETP 80
Cdd:TIGR02013  387 LSQFMDQTNPLAELTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLSTYARVNEYGFIETP 466

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667638082    81 YRKVVDGQV--TEEIEYLSAIEEGKYVIAQANSNLDENFRFTDAFVTARGEhGESGLYRPDEIHYMDVSTQQVVSVAAAL 158
Cdd:TIGR02013  467 YRKVKDGKVvvTDEIDYLTADEEDNYVIAQANAPLDENGRFVEDLVVARYR-GEITLVSPDQVDYMDVSPKQVVSVAASL 545

                          170
                   ....*....|....
gi 667638082   159 IPFLEHDDANRALM 172
Cdd:TIGR02013  546 IPFLEHDDANRALM 559
PRK14844 PRK14844
DNA-directed RNA polymerase subunit beta/beta';
1-172 1.63e-83

DNA-directed RNA polymerase subunit beta/beta';


Pssm-ID: 173305 [Multi-domain]  Cd Length: 2836  Bit Score: 268.03  E-value: 1.63e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667638082    1 LSQFMDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHATHYGRVCPIETPEGPNIGLINSLSVYARTNDYGFLETP 80
Cdd:PRK14844  532 LSQFMDQTNPLSEITHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGQNIGLINSLAIYARINKYGFIESP 611

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667638082   81 YRKVVDGQVTEEIEYLSAIEEGKYVIAQANSNLDENFRFTDAFVTARgEHGESGLYRPDEIHYMDVSTQQVVSVAAALIP 160
Cdd:PRK14844  612 YRKVVNRVVTDQIEYLSAIDEGLYYIADTSAKLDENNCFVDDMLYCR-YAGSFVMVSSDQVSYIDVSPKQVISVAASLIP 690

                         170
                  ....*....|..
gi 667638082  161 FLEHDDANRALM 172
Cdd:PRK14844  691 FLENDDANRALM 702
PRK09603 PRK09603
DNA-directed RNA polymerase subunit beta/beta';
1-172 4.14e-79

DNA-directed RNA polymerase subunit beta/beta';


Pssm-ID: 181983 [Multi-domain]  Cd Length: 2890  Bit Score: 255.62  E-value: 4.14e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667638082    1 LSQFMDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHATHYGRVCPIETPEGPNIGLINSLSVYARTNDYGFLETP 80
Cdd:PRK09603  525 LSQFMDQTNPLSEVTHKRRLSALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTFTRVNDLGFIEAP 604

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667638082   81 YRKVVDGQVTEEIEYLSAIEEGKYVIAQANSNLDENFRFTDAFVTARGEhGESGLYRPDEIHYMDVSTQQVVSVAAALIP 160
Cdd:PRK09603  605 YKKVVDGKVVGETIYLTAIQEDSHIIAPASTPIDEEGNILGDLIETRVE-GEIVLNEKSKVTLMDLSSSMLVGVAASLIP 683

                         170
                  ....*....|..
gi 667638082  161 FLEHDDANRALM 172
Cdd:PRK09603  684 FLEHDDANRALM 695
rpoB CHL00001
RNA polymerase beta subunit
 1-172 1.57e-70

RNA polymerase beta subunit


Pssm-ID: 214330 [Multi-domain]  Cd Length: 1070  Bit Score: 230.17  E-value: 1.57e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667638082    1 LSQFMDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHATHYGRVCPIETPEGPNIGLINSLSVYARTNDYGFLETP 80
Cdd:CHL00001  374 LSQFLDQTNPLTEIVHGRKLSSLGPGGLTGRTASFRVRDIHPSHYGRICPIDTSEGINAGLIGSLAIHARIGHWGSLESP 453

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667638082   81 YRKVVDGQVTEEIEYLSAIEEGKYVIAQANSnLDENFRFTDAFVT-ARgehgesglYR-------PDEIHYMDVSTQQVV 152
Cdd:CHL00001  454 FYEISERSKEERMVYLSPSEDEYYMIAAGNS-LALNQGIQEEQVVpAR--------YRqefltiaWEQIHLRSIFPFQYF 524

                         170       180
                  ....*....|....*....|
gi 667638082  153 SVAAALIPFLEHDDANRALM 172
Cdd:CHL00001  525 SIGASLIPFLEHNDANRALM 544
rpoB CHL00207
RNA polymerase beta subunit; Provisional
 1-172 3.62e-69

RNA polymerase beta subunit; Provisional


Pssm-ID: 214397 [Multi-domain]  Cd Length: 1077  Bit Score: 226.51  E-value: 3.62e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667638082    1 LSQFMDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHATHYGRVCPIETPEGPNIGLINSLSVYARTNDYGFLETP 80
Cdd:CHL00207  366 LSQYMDQTNPLSELTHKRRISILGPGGLDKDRISFAVRDIHPSHYGRICPIETPEGPNCGLIGSLATNARINKFGFIETP 445

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667638082   81 YRKVVDGQV--TEEIEYLSAIEEGKYVIAQANSNLDENFRFTDAFVTARgEHGESGLYRPDEIHYMDVSTQQVVSVAAAL 158
Cdd:CHL00207  446 FYKVINGKVkkFGNPIYLTADSEDLYRIAPNDINLNKNNYFKKNIIPVR-YKQEFKTVNPSKVDFIAISPIQVFSIAESL 524

                         170
                  ....*....|....
gi 667638082  159 IPFLEHDDANRALM 172
Cdd:CHL00207  525 IPFLEHNDANRALM 538
RNA_pol_B_RPB2 cd00653
RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. ...
 1-172 2.05e-55

RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase complex contains two related members of this family, in each case they are the two largest subunits.The clamp is a mobile structure that grips DNA during elongation.


Pssm-ID: 238353 [Multi-domain]  Cd Length: 866  Bit Score: 186.62  E-value: 2.05e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667638082   1 LSQFMDQNNPLSEVTHKRRISAlgpGGLTRERAGFEVRDVHATHYGRVCPIETPEGPNIGLINSLSVYARTNdyGFLETP 80
Cdd:cd00653  313 LSQVLDRLNPLSELSHKRRISS---LGLFRERKGFEVRDLHPSHWGRICPIETPEGENCGLVKNLALMARIS--GRIERP 387

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 667638082  81 YRKVVdgqvteeieylsaieegkyviaqansnldenfrftdafvtargehgesglyrpDEIHYMDVSTQQVVSVAAALIP 160
Cdd:cd00653  388 YRIVE-----------------------------------------------------KEVTHIEISPSQILSVAASLIP 414

                        170
                 ....*....|..
gi 667638082 161 FLEHDDANRALM 172
Cdd:cd00653  415 FPEHNQSPRNLY 426
RNA_pol_Rpb2_3 pfam04565
RNA polymerase Rpb2, domain 3; RNA polymerases catalyze the DNA dependent polymerization of ...
 3-70 2.88e-39

RNA polymerase Rpb2, domain 3; RNA polymerases catalyze the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 3, s also known as the fork domain and is proximal to catalytic site.


Pssm-ID: 428011 [Multi-domain]  Cd Length: 67  Bit Score: 127.64  E-value: 2.88e-39
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 667638082    3 QFMDQNNPLSEVTHKRRISAlGPGGLTRERAGFEVRDVHATHYGRVCPIETPEGPNIGLINSLSVYAR 70
Cdd:pfam04565   1 QVLDRTNYLSTLSHLRRVNS-PRGGLFREMKTTEVRDLHPSHWGRICPVETPEGPNCGLVKHLALYAR 67
RNA_pol_Rpb2_45 pfam10385
RNA polymerase beta subunit external 1 domain; RNA polymerases catalyze the DNA-dependent ...
 81-147 3.11e-32

RNA polymerase beta subunit external 1 domain; RNA polymerases catalyze the DNA-dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared with three in eukaryotes (not including mitochondrial or chloroplast polymerases). This domain in prokaryotes spans the gap between domains 4 and 5 of the yeast protein. It is also known as the external 1 region of the polymerase and is bound in association with the external 2 region.


Pssm-ID: 463067 [Multi-domain]  Cd Length: 66  Bit Score: 109.76  E-value: 3.11e-32
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 667638082   81 YRKVVDGQVTEEIEYLSAIEEGKYVIAQANSNLDENFRFTDAFVTARgEHGESGLYRPDEIHYMDVS 147
Cdd:pfam10385   1 YRKVEDGKVTDEIVYLTADEEDGYVIAQANAPLDEDGRFVDERVSAR-YRGEFPLVPPEEVDYMDVS 66
PRK08565 PRK08565
DNA-directed RNA polymerase subunit B; Provisional
 2-69 7.99e-19

DNA-directed RNA polymerase subunit B; Provisional


Pssm-ID: 236291 [Multi-domain]  Cd Length: 1103  Bit Score: 82.70  E-value: 7.99e-19
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 667638082    2 SQFMDQNNPLSEVTHKRRIsaLGPggLTRERAGFEVRDVHATHYGRVCPIETPEGPNIGLINSLSVYA 69
Cdd:PRK08565  403 SQLLDRTNYLSTLSHLRRV--VSP--LSRGQPHFEARDLHGTQWGRICPFETPEGPNCGLVKNLALMA 466
PRK09606 PRK09606
DNA-directed RNA polymerase subunit B''; Validated
 2-69 2.65e-18

DNA-directed RNA polymerase subunit B''; Validated


Pssm-ID: 236587 [Multi-domain]  Cd Length: 494  Bit Score: 81.15  E-value: 2.65e-18
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 667638082   2 SQFMDQNNPLSEVTHKRRISAlgpgGLTRERAGFEVRDVHATHYGRVCPIETPEGPNIGLINSLSVYA 69
Cdd:PRK09606 406 SQLLDRTDYMATLSHLRRVVS----PLSRSQPHFEARDLHPTQWGRICPSETPEGPNCGLVKNFAQMV 469
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
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