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Conserved domains on  [gi|744514826|gb|AJC97295|]
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cytochrome b, partial (mitochondrion) [Peromyscus maniculatus]

Protein Classification

cytochrome b( domain architecture ID 11475898)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-356 0e+00

cytochrome b; Provisional


:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 685.99  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826   1 DLPAPSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLHVG 80
Cdd:MTH00100  20 DLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVG 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826  81 RGMYYGSYTFTETWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFF 160
Cdd:MTH00100 100 RGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFF 179

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826 161 AFHFILPFIITALVVVHLLFLHETGSNNPSGLNSDADKIPFHPYYTIKDILGILLLLMALMILVLFFPDILGDPDNYTPA 240
Cdd:MTH00100 180 AFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPA 259

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826 241 NPLNTPAHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALLPLIQTSKQRGLTFRPITQVLFWILVANLFILTWIG 320
Cdd:MTH00100 260 NPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIG 339

                        330       340       350
                 ....*....|....*....|....*....|....*.
gi 744514826 321 GQPVEHPFVMIGQLASISYFTIIIILIPIAGMIENN 356
Cdd:MTH00100 340 GQPVEHPFIIIGQLASILYFLIILILMPIASLIENN 375
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-356 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 685.99  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826   1 DLPAPSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLHVG 80
Cdd:MTH00100  20 DLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVG 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826  81 RGMYYGSYTFTETWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFF 160
Cdd:MTH00100 100 RGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFF 179

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826 161 AFHFILPFIITALVVVHLLFLHETGSNNPSGLNSDADKIPFHPYYTIKDILGILLLLMALMILVLFFPDILGDPDNYTPA 240
Cdd:MTH00100 180 AFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPA 259

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826 241 NPLNTPAHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALLPLIQTSKQRGLTFRPITQVLFWILVANLFILTWIG 320
Cdd:MTH00100 260 NPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIG 339

                        330       340       350
                 ....*....|....*....|....*....|....*.
gi 744514826 321 GQPVEHPFVMIGQLASISYFTIIIILIPIAGMIENN 356
Cdd:MTH00100 340 GQPVEHPFIIIGQLASILYFLIILILMPIASLIENN 375
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
3-340 1.77e-122

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 358.33  E-value: 1.77e-122
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826   3 PAPSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLHVGRG 82
Cdd:COG1290   31 PFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRG 110

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826  83 MYYGSYTFTE--TWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFF 160
Cdd:COG1290  111 FFYGAYKKPRelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFF 190

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826 161 AFH-FILPFIITALVVVHLLFLHETGSNNPSG----LNSDADKIPFHPYYTIKDILGILLLLMALMILVLFFPDilGDPD 235
Cdd:COG1290  191 ALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPP 268

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826 236 NYTPANPLNTPAHIKPEWYFLFAYAILRSIP--NKLGGVLALILSILILALLPLIQTSKQRGLTFRPITQVLFWILVANL 313
Cdd:COG1290  269 NYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFF 348

                        330       340
                 ....*....|....*....|....*..
gi 744514826 314 FILTWIGGQPVehPFVMIGQLASISYF 340
Cdd:COG1290  349 IVLTILGANPP--IATLLGSINTVTYF 373
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-187 2.21e-96

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 284.65  E-value: 2.21e-96
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826   1 DLPAPSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLHVG 80
Cdd:cd00284   12 DLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIF 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826  81 RGMYYGSY--TFTETWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTR 158
Cdd:cd00284   92 RGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTR 171

                        170       180
                 ....*....|....*....|....*....
gi 744514826 159 FFAFHFILPFIITALVVVHLLFLHETGSN 187
Cdd:cd00284  172 FFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-185 3.92e-90

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 268.48  E-value: 3.92e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826    1 DLPAPSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLHVG 80
Cdd:pfam00033   3 SLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826   81 RGMYYG--SYTFTETWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTR 158
Cdd:pfam00033  83 RGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTR 162

                         170       180
                  ....*....|....*....|....*..
gi 744514826  159 FFAFHFILPFIITALVVVHLLFLHETG 185
Cdd:pfam00033 163 FFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 239-272 8.99e-07

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 48.25  E-value: 8.99e-07
                          10        20        30
                  ....*....|....*....|....*....|....
gi 744514826  239 PANPLNTPAHIKPEWYFLFAYAILRSIPNKLGGV 272
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGV 98
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-356 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 685.99  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826   1 DLPAPSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLHVG 80
Cdd:MTH00100  20 DLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVG 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826  81 RGMYYGSYTFTETWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFF 160
Cdd:MTH00100 100 RGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFF 179

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826 161 AFHFILPFIITALVVVHLLFLHETGSNNPSGLNSDADKIPFHPYYTIKDILGILLLLMALMILVLFFPDILGDPDNYTPA 240
Cdd:MTH00100 180 AFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPA 259

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826 241 NPLNTPAHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALLPLIQTSKQRGLTFRPITQVLFWILVANLFILTWIG 320
Cdd:MTH00100 260 NPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIG 339

                        330       340       350
                 ....*....|....*....|....*....|....*.
gi 744514826 321 GQPVEHPFVMIGQLASISYFTIIIILIPIAGMIENN 356
Cdd:MTH00100 340 GQPVEHPFIIIGQLASILYFLIILILMPIASLIENN 375
CYTB MTH00119
cytochrome b; Provisional
 1-355 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 623.08  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826   1 DLPAPSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLHVG 80
Cdd:MTH00119  21 DLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIG 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826  81 RGMYYGSYTFTETWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFF 160
Cdd:MTH00119 101 RGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFF 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826 161 AFHFILPFIITALVVVHLLFLHETGSNNPSGLNSDADKIPFHPYYTIKDILGILLLLMALMILVLFFPDILGDPDNYTPA 240
Cdd:MTH00119 181 ALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPA 260

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826 241 NPLNTPAHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALLPLIQTSKQRGLTFRPITQVLFWILVANLFILTWIG 320
Cdd:MTH00119 261 NPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIG 340

                        330       340       350
                 ....*....|....*....|....*....|....*
gi 744514826 321 GQPVEHPFVMIGQLASISYFTIIIILIPIAGMIEN 355
Cdd:MTH00119 341 SQPVEHPFIIIGQLASILYFTILLILFPLLGALEN 375
CYTB MTH00131
cytochrome b; Provisional
 1-355 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 622.06  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826   1 DLPAPSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLHVG 80
Cdd:MTH00131  20 DLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIG 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826  81 RGMYYGSYTFTETWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFF 160
Cdd:MTH00131 100 RGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFF 179

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826 161 AFHFILPFIITALVVVHLLFLHETGSNNPSGLNSDADKIPFHPYYTIKDILGILLLLMALMILVLFFPDILGDPDNYTPA 240
Cdd:MTH00131 180 AFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPA 259

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826 241 NPLNTPAHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALLPLIQTSKQRGLTFRPITQVLFWILVANLFILTWIG 320
Cdd:MTH00131 260 NPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIG 339

                        330       340       350
                 ....*....|....*....|....*....|....*
gi 744514826 321 GQPVEHPFVMIGQLASISYFTIIIILIPIAGMIEN 355
Cdd:MTH00131 340 GMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLEN 374
CYTB MTH00074
cytochrome b; Provisional
 1-355 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 601.67  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826   1 DLPAPSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLHVG 80
Cdd:MTH00074  21 DLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIG 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826  81 RGMYYGSYTFTETWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFF 160
Cdd:MTH00074 101 RGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFF 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826 161 AFHFILPFIITALVVVHLLFLHETGSNNPSGLNSDADKIPFHPYYTIKDILGILLLLMALMILVLFFPDILGDPDNYTPA 240
Cdd:MTH00074 181 AFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPA 260

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826 241 NPLNTPAHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALLPLIQTSKQRGLTFRPITQVLFWILVANLFILTWIG 320
Cdd:MTH00074 261 NPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVANTLILTWIG 340

                        330       340       350
                 ....*....|....*....|....*....|....*
gi 744514826 321 GQPVEHPFVMIGQLASISYFTIIIILIPIAGMIEN 355
Cdd:MTH00074 341 GQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLEN 375
CYTB MTH00156
cytochrome b; Provisional
 1-340 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 585.59  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826   1 DLPAPSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLHVG 80
Cdd:MTH00156  10 DLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIG 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826  81 RGMYYGSYTFTETWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFF 160
Cdd:MTH00156  90 RGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFF 169

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826 161 AFHFILPFIITALVVVHLLFLHETGSNNPSGLNSDADKIPFHPYYTIKDILGILLLLMALMILVLFFPDILGDPDNYTPA 240
Cdd:MTH00156 170 TFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPA 249

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826 241 NPLNTPAHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALLPLIQTSKQRGLTFRPITQVLFWILVANLFILTWIG 320
Cdd:MTH00156 250 NPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIVILLTWIG 329

                        330       340
                 ....*....|....*....|
gi 744514826 321 GQPVEHPFVMIGQLASISYF 340
Cdd:MTH00156 330 ARPVEEPYILTGQILTILYF 349
CYTB MTH00191
cytochrome b; Provisional
 1-341 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 584.19  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826   1 DLPAPSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLHVG 80
Cdd:MTH00191  17 DLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIG 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826  81 RGMYYGSYTFTETWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFF 160
Cdd:MTH00191  97 RGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFF 176

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826 161 AFHFILPFIITALVVVHLLFLHETGSNNPSGLNSDADKIPFHPYYTIKDILGILLLLMALMILVLFFPDILGDPDNYTPA 240
Cdd:MTH00191 177 TFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPA 256

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826 241 NPLNTPAHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALLPLIQTSKQRGLTFRPITQVLFWILVANLFILTWIG 320
Cdd:MTH00191 257 NPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANFILLTWLG 336

                        330       340
                 ....*....|....*....|.
gi 744514826 321 GQPVEHPFVMIGQLASISYFT 341
Cdd:MTH00191 337 GQPVEDPFILLGQISSFLYFF 357
CYTB MTH00145
cytochrome b; Provisional
 1-340 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 555.67  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826   1 DLPAPSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLHVG 80
Cdd:MTH00145  21 DLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIG 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826  81 RGMYYGSYTFTETWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFF 160
Cdd:MTH00145 101 RGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFF 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826 161 AFHFILPFIITALVVVHLLFLHETGSNNPSGLNSDADKIPFHPYYTIKDILGILLLLMALMILVLFFPDILGDPDNYTPA 240
Cdd:MTH00145 181 SLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPA 260

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826 241 NPLNTPAHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALLPLIQTSKQRGLTFRPITQVLFWILVANLFILTWIG 320
Cdd:MTH00145 261 NPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNFFILTWIG 340

                        330       340
                 ....*....|....*....|
gi 744514826 321 GQPVEHPFVMIGQLASISYF 340
Cdd:MTH00145 341 ACPVEEPYETIGQVFTVLYF 360
CYTB MTH00034
cytochrome b; Validated
 1-356 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 538.91  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826   1 DLPAPSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLHVG 80
Cdd:MTH00034  20 DLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIG 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826  81 RGMYYGSYTFTETWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFF 160
Cdd:MTH00034 100 RGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFF 179

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826 161 AFHFILPFIITALVVVHLLFLHETGSNNPSGLNSDADKIPFHPYYTIKDILGILLLLMALMILVLFFPDILGDPDNYTPA 240
Cdd:MTH00034 180 AFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPA 259

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826 241 NPLNTPAHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALLPLIQTSKQRGLTFRPITQVLFWILVANLFILTWIG 320
Cdd:MTH00034 260 NPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIATFFILTWIG 339

                        330       340       350
                 ....*....|....*....|....*....|....*.
gi 744514826 321 GQPVEHPFVMIGQLASISYFTIIIILIPIAGMIENN 356
Cdd:MTH00034 340 SQPVEYPFILLGQVASVLYFSLFLFFFPLISYLENK 375
CYTB MTH00016
cytochrome b; Validated
 1-341 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 530.79  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826   1 DLPAPSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLHVG 80
Cdd:MTH00016  21 DLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIG 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826  81 RGMYYGSYTFTETWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFF 160
Cdd:MTH00016 101 RGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFF 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826 161 AFHFILPFIITALVVVHLLFLHETGSNNPSGLNSDADKIPFHPYYTIKDILGILLLLMALMILVLFFPDILGDPDNYTPA 240
Cdd:MTH00016 181 ALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPA 260

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826 241 NPLNTPAHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALLPLIQTSKQRGLTFRPITQVLFWILVANLFILTWIG 320
Cdd:MTH00016 261 NPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVSNFLLLTWIG 340

                        330       340
                 ....*....|....*....|.
gi 744514826 321 GQPVEHPFVMIGQLASISYFT 341
Cdd:MTH00016 341 GRPVEPPYEFLGQIFTVFYFF 361
CYTB MTH00022
cytochrome b; Validated
 1-356 1.54e-170

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 479.58  E-value: 1.54e-170
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826   1 DLPAPSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLHVG 80
Cdd:MTH00022  19 DLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIG 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826  81 RGMYYGSYTFTETWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFF 160
Cdd:MTH00022  99 RGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFF 178

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826 161 AFHFILPFIITALVVVHLLFLHETGSNNPSGLNSDADKIPFHPYYTIKDILGILLLLMALMILVLFFPDILGDPDNYTPA 240
Cdd:MTH00022 179 SLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQA 258

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826 241 NPLNTPAHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALLPLIQTSKQRGLTFRPITQVLFWILVANLFILTWIG 320
Cdd:MTH00022 259 NSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDFILLTWIG 338

                        330       340       350
                 ....*....|....*....|....*....|....*.
gi 744514826 321 GQPVEHPFVMIGQLASISYFTIIIILIPIAGMIENN 356
Cdd:MTH00022 339 SQVVEEPFILIGQLLSFFYFFYFLVLIPLLGELENQ 374
CYTB MTH00053
cytochrome b; Provisional
 1-355 1.54e-168

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 474.58  E-value: 1.54e-168
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826   1 DLPAPSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLHVG 80
Cdd:MTH00053  21 DLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIG 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826  81 RGMYYGSYTFTETWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFF 160
Cdd:MTH00053 101 RGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFY 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826 161 AFHFILPFIITALVVVHLLFLHETGSNNPSGLNSDADKIPFHPYYTIKDILGILLLLMALMILVLFFPDILGDPDNYTPA 240
Cdd:MTH00053 181 SLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQA 260

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826 241 NPLNTPAHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALLPLIQTSKQRGLTFRPITQVLFWILVANLFILTWIG 320
Cdd:MTH00053 261 NPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFFLLTWIG 340

                        330       340       350
                 ....*....|....*....|....*....|....*
gi 744514826 321 GQPVEHPFVMIGQLASISYFTIIIILIPIAGMIEN 355
Cdd:MTH00053 341 GQPVEEPYILIGQIASIFYFAYFLILMPLAGYLEN 375
CYTB MTH00224
cytochrome b; Provisional
 1-341 1.39e-167

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 472.10  E-value: 1.39e-167
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826   1 DLPAPSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLHVG 80
Cdd:MTH00224  21 DLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVG 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826  81 RGMYYGSYTFTETWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFF 160
Cdd:MTH00224 101 RGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFF 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826 161 AFHFILPFIITALVVVHLLFLHETGSNNPSGLNSDADKIPFHPYYTIKDILGILLLLMALMILVLFFPDILGDPDNYTPA 240
Cdd:MTH00224 181 SFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMA 260

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826 241 NPLNTPAHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALLPLIQTSKQRGLTFRPITQVLFWILVANLFILTWIG 320
Cdd:MTH00224 261 NPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVTSWAILTWIG 340

                        330       340
                 ....*....|....*....|.
gi 744514826 321 GQPVEHPFVMIGQLASISYFT 341
Cdd:MTH00224 341 GRPVEDPFEGIGQVFTILYFS 361
CYTB MTH00033
cytochrome b; Provisional
 1-355 8.20e-129

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 373.89  E-value: 8.20e-129
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826   1 DLPAPSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLHVG 80
Cdd:MTH00033  17 DLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIG 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826  81 RGMYYGSYTFTETWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFF 160
Cdd:MTH00033  97 RGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFF 176

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826 161 AFHFILPFIITALVVVHLLFLHETGSNNPSGLNSDADKIPFHPYYTIKDILGILLLLMALMILVL--FFPDILGDPDNYT 238
Cdd:MTH00033 177 SLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIepRIETLLQDPENFI 256

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826 239 PANPLNTPAHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALLPLIQTSKQRGLTFRPITQVLFWILVANLFILTW 318
Cdd:MTH00033 257 QANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILTW 336

                        330       340       350
                 ....*....|....*....|....*....|....*...
gi 744514826 319 IGGQPV-EHPFVMIGQLASISYFTIIIILIPIAGMIEN 355
Cdd:MTH00033 337 IGSAPAgADPYVLIGRIATIFYFGYFLVLVPLLGYLSN 374
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
3-340 1.77e-122

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 358.33  E-value: 1.77e-122
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826   3 PAPSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLHVGRG 82
Cdd:COG1290   31 PFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRG 110

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826  83 MYYGSYTFTE--TWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFF 160
Cdd:COG1290  111 FFYGAYKKPRelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFF 190

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826 161 AFH-FILPFIITALVVVHLLFLHETGSNNPSG----LNSDADKIPFHPYYTIKDILGILLLLMALMILVLFFPDilGDPD 235
Cdd:COG1290  191 ALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPP 268

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826 236 NYTPANPLNTPAHIKPEWYFLFAYAILRSIP--NKLGGVLALILSILILALLPLIQTSKQRGLTFRPITQVLFWILVANL 313
Cdd:COG1290  269 NYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFF 348

                        330       340
                 ....*....|....*....|....*..
gi 744514826 314 FILTWIGGQPVehPFVMIGQLASISYF 340
Cdd:COG1290  349 IVLTILGANPP--IATLLGSINTVTYF 373
CYTB MTH00086
cytochrome b; Provisional
 2-340 7.46e-117

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 342.69  E-value: 7.46e-117
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826   2 LPAPSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLHVGR 81
Cdd:MTH00086  10 LPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFK 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826  82 GMYYGSYTFTETWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFA 161
Cdd:MTH00086  90 GLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFV 169

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826 162 FHFILPFIITALVVVHLLFLHETGSNNPSGLNSDADKIPFHPYYTIKDiLGILLLLMALMILVLFFPDILGDPDNYTPAN 241
Cdd:MTH00086 170 LHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKD-AYNIIFWLVFIIFSLFYPFNLGDPEMFIEAD 248

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826 242 PLNTPAHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALLPLIqtsKQRGLTFRPITQVLFWILVANLFILTWIGG 321
Cdd:MTH00086 249 PMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFV---NNYTSCLNKLNKFLVFSFIVVNVILSWLGQ 325

                        330
                 ....*....|....*....
gi 744514826 322 QPVEHPFVMIGQLASISYF 340
Cdd:MTH00086 326 CLVEYPFLFLSQIFSFIYF 344
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-187 2.21e-96

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 284.65  E-value: 2.21e-96
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826   1 DLPAPSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLHVG 80
Cdd:cd00284   12 DLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIF 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826  81 RGMYYGSY--TFTETWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTR 158
Cdd:cd00284   92 RGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTR 171

                        170       180
                 ....*....|....*....|....*....
gi 744514826 159 FFAFHFILPFIITALVVVHLLFLHETGSN 187
Cdd:cd00284  172 FFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-185 3.92e-90

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 268.48  E-value: 3.92e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826    1 DLPAPSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLHVG 80
Cdd:pfam00033   3 SLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826   81 RGMYYG--SYTFTETWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTR 158
Cdd:pfam00033  83 RGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTR 162

                         170       180
                  ....*....|....*....|....*..
gi 744514826  159 FFAFHFILPFIITALVVVHLLFLHETG 185
Cdd:pfam00033 163 FFSLHFLLPFILAILMLLHLLFLHETG 189
CYTB MTH00046
cytochrome b; Validated
 1-338 4.94e-90

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 274.17  E-value: 4.94e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826   1 DLPAPSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLHVG 80
Cdd:MTH00046  11 DLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMG 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826  81 RGMYYGSYTFTETWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFF 160
Cdd:MTH00046  91 RALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVF 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826 161 AFHFILPFIITALVVVHLLFLHETGSNNP-SGLNSDADKIPFHPYYTIKDILGILLLLMALMILVLFFPDILGDPDNYTP 239
Cdd:MTH00046 171 SVHICLGFVILGLMVVHLFYLHKSGSSNPlFSSNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLE 250

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826 240 ANPLNTPAHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALLPLIQTSkqrglTFRPITQVLFWILVANLFILTWI 319
Cdd:MTH00046 251 ADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGLVLVLSFLFFLWVPTFNGSS-----VYSVWRQVNFWLIVSLFFSLSYL 325

                        330
                 ....*....|....*....
gi 744514826 320 GGQPVEHPFVMIGQLASIS 338
Cdd:MTH00046 326 GGCHPEYPYLLISQLFSVL 344
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 188-335 1.61e-45

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 152.41  E-value: 1.61e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826 188 NPSGLNSDADKIPFHPYYTIKDILGILLLLMALMILVLFFPDILGDPDNYTPANPLNTPAHIKPEWYFLFAYAILRSIPN 267
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 744514826 268 KLGGVLALILSILILALLPLIQTSKQRGlTFRPITQVLFWILVANLFILTWIGGQPVEHPFVMIGQLA 335
Cdd:cd00290   81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
69-234 1.92e-43

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 147.77  E-value: 1.92e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826   69 SMFFICLFLHVGRGMYYGSYTFTE--TWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIW 146
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826  147 GGFSVDKATLTRFFAFHF-ILPFIITALVVVHLLFLHETGSNNPSGLNSDADKIPFHPYYTIKDILGILLLLMALMILVL 225
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 744514826  226 FFPDILGDP 234
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 14-189 6.96e-43

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 148.32  E-value: 6.96e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826  14 FGSLLGICLVIQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLHVGRGMYYGSYTFTE- 92
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826  93 -TWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFH-FILPFII 170
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                        170
                 ....*....|....*....
gi 744514826 171 TALVVVHLLFLHETGSNNP 189
Cdd:PRK03735 204 AVLMLAHFLMIRKQGISGP 222
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
239-339 6.46e-37

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 128.75  E-value: 6.46e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826  239 PANPLNTPAHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILALLPLIQTSKQRGLTFRPITQVLFWILVANLFILTW 318
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 744514826  319 IGGQPVEHPFVMIGQLASISY 339
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
petB CHL00070
cytochrome b6
 5-190 9.30e-35

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 126.76  E-value: 9.30e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826   5 PSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLHVGRGMY 84
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 744514826  85 YGSYTFTE--TWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAF 162
Cdd:CHL00070 107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                        170       180
                 ....*....|....*....|....*....
gi 744514826 163 H-FILPFIITALVVVHLLFLHETGSNNPS 190
Cdd:CHL00070 187 HtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 239-272 3.68e-08

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 52.10  E-value: 3.68e-08
                         10        20        30
                 ....*....|....*....|....*....|....
gi 744514826 239 PANPLNTPAHIKPEWYFLFAYAILRSIPNKLGGV 272
Cdd:COG5679   66 PADPFATPLEILPEWYLYPVFQILRVVPNKLLGI 99
petD CHL00058
cytochrome b6/f complex subunit IV
 239-272 8.96e-08

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 51.16  E-value: 8.96e-08
                         10        20        30
                 ....*....|....*....|....*....|....
gi 744514826 239 PANPLNTPAHIKPEWYFLFAYAILRSIPNKLGGV 272
Cdd:CHL00058  65 PADPFATPLEILPEWYFFPVFQILRTVPNKLLGV 98
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 239-272 8.99e-07

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 48.25  E-value: 8.99e-07
                          10        20        30
                  ....*....|....*....|....*....|....
gi 744514826  239 PANPLNTPAHIKPEWYFLFAYAILRSIPNKLGGV 272
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGV 98
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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