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Conserved domains on  [gi|746770004|gb|AJD79782|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Petroica pusilla ambrynensis]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-315 2.54e-151

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 428.09  E-value: 2.54e-151
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004   1 AKLIFITSLLLGTTITISSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQATASTLLLFSSMVNAWSTGQW 80
Cdd:MTH00112   5 AKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQW 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004  81 DITQLTDPASCAILTTAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTALKFPPITLLYMTCHSLNTTLLTTMAILSAAM 160
Cdd:MTH00112  85 DITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLI 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004 161 GGWMGLNQTQIRKILAFSSISHLGWMAIIIAYNPKLTLLNFYLYSLMTAAAFLTFHSTKSLKLSTLMTSWTKTPTLNAAL 240
Cdd:MTH00112 165 GGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTL 244

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 746770004 241 LLALLSLAGLPPLTGFLPKWLIIQELTKQSMAPAAAMISMLSLLSLFFYLRLAYCATITLPPHTTNHMKQWHTNK 315
Cdd:MTH00112 245 MLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKP 319
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-315 2.54e-151

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 428.09  E-value: 2.54e-151
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004   1 AKLIFITSLLLGTTITISSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQATASTLLLFSSMVNAWSTGQW 80
Cdd:MTH00112   5 AKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQW 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004  81 DITQLTDPASCAILTTAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTALKFPPITLLYMTCHSLNTTLLTTMAILSAAM 160
Cdd:MTH00112  85 DITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLI 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004 161 GGWMGLNQTQIRKILAFSSISHLGWMAIIIAYNPKLTLLNFYLYSLMTAAAFLTFHSTKSLKLSTLMTSWTKTPTLNAAL 240
Cdd:MTH00112 165 GGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTL 244

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 746770004 241 LLALLSLAGLPPLTGFLPKWLIIQELTKQSMAPAAAMISMLSLLSLFFYLRLAYCATITLPPHTTNHMKQWHTNK 315
Cdd:MTH00112 245 MLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKP 319
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 19-264 3.10e-26

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 105.09  E-value: 3.10e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004   19 SNHWIMAWAGLEINTLAILPLI-SKSHHPRAIEAATKYFLVQATASTLLLFSSMVNAWSTGQWDITQLTDPASCAI---- 93
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGLnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004   94 -------LTTAIAMKLGLVPFHFWFPEVLQGSPLTTGLLL-STALKFPPI-----TLLYMTCHSLNTTLLTTMAILSAAM 160
Cdd:pfam00361  81 llllfllILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYglirrSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004  161 GGWMGLNQTQIRKILAFSSISHLGWMAIIIA----YNPKLTLLNFYLYSLMTAAAFLTF----HSTKSLKLSTLMTS-WT 231
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLCAgsviYRRVHTRNIRDYGGlAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 746770004  232 KTPTLNAALLLALLSLAGLPPLTGFLPKWLIIQ 264
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 10-266 1.13e-24

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 103.27  E-value: 1.13e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004  10 LLGTTITISSNHWIMAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQATASTLLLF-SSMVNAwSTGQWDITQL-- 85
Cdd:COG1007  112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGIaa 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004  86 ---TDPASCAILTTAIAM-------KLGLVPFHFWFPEVLQGSPLTTGLLLSTALK----FPPITLLYMTCHSLN---TT 148
Cdd:COG1007  191 alaAGGANSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaafAALLRLLVEAFPGLAadwQL 270

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004 149 LLTTMAILSAAMGGWMGLNQTQIRKILAFSSISHLGWMAI-IIAYNPK-LTLLNFYL--YSLMTAAAF-----LTFHSTK 219
Cdd:COG1007  271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLgLAAGTPLgVSAALFYLlaYLFMNLGAFavillLSRKGGE 350

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*..
gi 746770004 220 SLKLSTLMTSWTKTPTLNAALLLALLSLAGLPPLTGFLPKWLIIQEL 266
Cdd:COG1007  351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAA 397
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 10-271 1.06e-21

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 95.01  E-value: 1.06e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004   10 LLGTTITISSNHWIMAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQATASTLLLFSSMVNAWSTGQWDITQLTDP 88
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004   89 ASCAILT------------TAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTALK---FPPITLLYMTC----HSLNTTL 149
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaiFAVFLRLFLYIlfgfSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004  150 LTTMAILSAAMGGWMGLNQTQIRKILAFSSISHLGWMAIIIAYNPKLTLLN--FYL--YSLMTAAAFLTFHSTKSLK--- 222
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLSLLRSYKdew 351

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 746770004  223 ---LSTLMTSWTKTPTLNAALLLALLSLAGLPPLTGFLPKWLIIQELTKQSM 271
Cdd:TIGR01770 352 ieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGL 403
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-315 2.54e-151

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 428.09  E-value: 2.54e-151
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004   1 AKLIFITSLLLGTTITISSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQATASTLLLFSSMVNAWSTGQW 80
Cdd:MTH00112   5 AKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQW 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004  81 DITQLTDPASCAILTTAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTALKFPPITLLYMTCHSLNTTLLTTMAILSAAM 160
Cdd:MTH00112  85 DITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLI 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004 161 GGWMGLNQTQIRKILAFSSISHLGWMAIIIAYNPKLTLLNFYLYSLMTAAAFLTFHSTKSLKLSTLMTSWTKTPTLNAAL 240
Cdd:MTH00112 165 GGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTL 244

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 746770004 241 LLALLSLAGLPPLTGFLPKWLIIQELTKQSMAPAAAMISMLSLLSLFFYLRLAYCATITLPPHTTNHMKQWHTNK 315
Cdd:MTH00112 245 MLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKP 319
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 4-314 2.17e-122

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 354.61  E-value: 2.17e-122
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004   4 IFITSLLLGTTITISSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQATASTLLLFSSMVNAWSTGQWDIT 83
Cdd:MTH00070   8 ILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTGEWTIM 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004  84 QLTDPASCAILTTAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTALKFPPITLLYMTCHSLNTTLLTTMAILSAAMGGW 163
Cdd:MTH00070  88 NMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLLSTLIGGW 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004 164 MGLNQTQIRKILAFSSISHLGWMAIIIAYNPKLTLLNFYLYSLMTAAAFLTFHSTKSLKLSTLMTSWTKTPTLNAALLLA 243
Cdd:MTH00070 168 GGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLT 247

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 746770004 244 LLSLAGLPPLTGFLPKWLIIQELTKQSMAPAAAMISMLSLLSLFFYLRLAYCATITLPPHTTNHMKQWHTN 314
Cdd:MTH00070 248 LLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFK 318
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 4-314 1.61e-121

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 352.57  E-value: 1.61e-121
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004   4 IFITSLLLGTTITISSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQATASTLLLFSSMVNAWSTGQWDIT 83
Cdd:MTH00135   8 ILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGQWDIQ 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004  84 QLTDPASCAILTTAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTALKFPPITLLYMTcHSLNTTLLTTMAILSAAMGGW 163
Cdd:MTH00135  88 QMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQI-APTNPTLLITLGLTSTLVGGW 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004 164 MGLNQTQIRKILAFSSISHLGWMAIIIAYNPKLTLLNFYLYSLMTAAAFLTFHSTKSLKLSTLMTSWTKTPTLNAALLLA 243
Cdd:MTH00135 167 GGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPLI 246

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 746770004 244 LLSLAGLPPLTGFLPKWLIIQELTKQSMAPAAAMISMLSLLSLFFYLRLAYCATITLPPHTTNHMKQWHTN 314
Cdd:MTH00135 247 LLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLP 317
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 3-312 1.46e-107

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 316.79  E-value: 1.46e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004   3 LIFITSLLLGTTITISSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQATASTLLLFSSMVNAWSTGQWDI 82
Cdd:MTH00105   7 IIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYSGQWTI 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004  83 TQLTDPASCAILTTAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTALKFPPITLLYMTCHSLNTTLLTTMAILSAAMGG 162
Cdd:MTH00105  87 TKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAILSILIGG 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004 163 WMGLNQTQIRKILAFSSISHLGWMAIIIAYNPKLTLLNFYLYSLMTAAAFLTFHSTKSLKLSTLMTSWTKTPTLNAALLL 242
Cdd:MTH00105 167 WGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLILL 246

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 746770004 243 ALLSLAGLPPLTGFLPKWLIIQELTKQSMAPAAAMISMLSLLSLFFYLRLAYCATITLPPhTTNHMK-QWH 312
Cdd:MTH00105 247 TLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFP-STNNMKmKWQ 316
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 3-313 1.55e-92

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 278.78  E-value: 1.55e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004   3 LIFITSLLLGTTITISSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQATASTLLLFSSMVNAWSTGQWDI 82
Cdd:MTH00200   7 PLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQWGI 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004  83 TQLTDPASCAILTTAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTALKFPPITLLYMTCHSLNTTLLTTMAILSAAMGG 162
Cdd:MTH00200  87 SEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLLSVLVGG 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004 163 WMGLNQTQIRKILAFSSISHLGWMAIIIAYNPKLTLLNFYLYSLMTAAAFLTFHSTKSLKLSTLMTSWTKTPTLNAALLL 242
Cdd:MTH00200 167 WGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGL 246

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 746770004 243 ALLSLAGLPPLTGFLPKWLIIQELTKQSMAPAAAMISMLSLLSLFFYLRLAYCATITLPPHTTNHMKQWHT 313
Cdd:MTH00200 247 TLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRT 317
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 3-263 2.10e-78

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 242.53  E-value: 2.10e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004   3 LIFITSLLLGTTITISSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQATASTLLLFSSMVNAWSTGQWDI 82
Cdd:MTH00041   7 IFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSI 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004  83 TQLTDPASCAILTTAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTALKFPPITLLYMTCHSLNTTLLTTMAILSAAMGG 162
Cdd:MTH00041  87 NGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGG 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004 163 WMGLNQTQIRKILAFSSISHLGWMAIIIAYNPKLTLLNFYLYSLMTAAAFLTFHSTKSLKLSTLMTSWTKTPTLNAALLL 242
Cdd:MTH00041 167 WGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFIL 246

                        250       260
                 ....*....|....*....|.
gi 746770004 243 ALLSLAGLPPLTGFLPKWLII 263
Cdd:MTH00041 247 SILSLGGLPPLTGFLNKFISL 267
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 2-271 1.28e-54

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 180.79  E-value: 1.28e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004   2 KLIFITSLLLGTTITISSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQATASTLLLFSSMVNAWSTGQWD 81
Cdd:MTH00160   7 KLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLNLMLFN 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004  82 ITqltdpaSCAILTTAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTALKFPPITLLYMTchsLNTTLLTTMAILSAAMG 161
Cdd:MTH00160  87 NI------SSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIILSAIIG 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004 162 GWMGLNQTQIRKILAFSSISHLGWMAIIIAYNPKLTLLNFYLYSLMTAAAFLTFHSTKSLKLSTLMTSWTKTPTLNAALL 241
Cdd:MTH00160 158 AIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLF 237

                        250       260       270
                 ....*....|....*....|....*....|
gi 746770004 242 LALLSLAGLPPLTGFLPKWLIIQELTKQSM 271
Cdd:MTH00160 238 LNLLSLGGLPPFLGFLPKWIIIQLLISNNM 267
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 1-271 5.32e-49

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 166.21  E-value: 5.32e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004   1 AKLIFITSLLLGTTITISSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQATASTLLLFSSMVNAWSTGQW 80
Cdd:MTH00144   5 SNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004  81 DITqltdpascAILTTAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTALKFPPITLLYMTCHSLNT-TLLTTMAILSAA 159
Cdd:MTH00144  85 FSM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSAL 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004 160 MGGWMGLNQTQIRKILAFSSISHLGWMAIIIAYNPKLTLLNFYLYSLMTaAAFLTFHSTKSLKLSTLMTSWTKTPTLNAA 239
Cdd:MTH00144 157 VGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSS-GFLFFSLWSGDSGSMKDLGSLKPSYKTGLS 235

                        250       260       270
                 ....*....|....*....|....*....|..
gi 746770004 240 LLLALLSLAGLPPLTGFLPKWLIIQELTKQSM 271
Cdd:MTH00144 236 IISLLLSLGGLPPFLGFCSKLLVLISSMESSP 267
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 3-271 2.22e-43

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 151.47  E-value: 2.22e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004   3 LIFITSLLLGTTITISSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQATASTLLLFSSmvnawsTGQWDI 82
Cdd:MTH00011   9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWSF 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004  83 TQLTDPASCAILTTAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTALKFPPITLLYMTCHSLNTTLLTTMAILSAAMGG 162
Cdd:MTH00011  83 PSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGG 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004 163 WMGLNQTQIRKILAFSSISHLGWMAIIIAYNPKLTLLNFYLYSLMTAAAFLTFHSTKSLKLSTLMTSWTKTPTLNAALLL 242
Cdd:MTH00011 163 LGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFI 242

                        250       260
                 ....*....|....*....|....*....
gi 746770004 243 ALLSLAGLPPLTGFLPKWLIIQELTKQSM 271
Cdd:MTH00011 243 MLLSLGGLPPFTGFMPKLMAIETLTSNSM 271
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 4-266 1.42e-37

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 135.96  E-value: 1.42e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004   4 IFITSLLLGTTITISSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQATASTLLLFSSMVNAWSTgqwdit 83
Cdd:MTH00197   2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL------ 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004  84 qLTDPASCAILTTAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTALKFPPITLLymTCHSLNTTLLTTMAILSAAMGGW 163
Cdd:MTH00197  76 -YLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLIL--AFNSSSFMGLLICSVLSSLIGGI 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004 164 MGLNQTQIRKILAFSSISHLGWMAIIIAYNPKLTLLNFYLYSLMTAAAFLTFHSTKSLKLSTLMTSWTKTPTLNAALLLA 243
Cdd:MTH00197 153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLS 232

                        250       260
                 ....*....|....*....|...
gi 746770004 244 LLSLAGLPPLTGFLPKWLIIQEL 266
Cdd:MTH00197 233 FLSLGGLPPLSGFFLKWLILTSL 255
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 19-264 3.10e-26

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 105.09  E-value: 3.10e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004   19 SNHWIMAWAGLEINTLAILPLI-SKSHHPRAIEAATKYFLVQATASTLLLFSSMVNAWSTGQWDITQLTDPASCAI---- 93
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGLnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004   94 -------LTTAIAMKLGLVPFHFWFPEVLQGSPLTTGLLL-STALKFPPI-----TLLYMTCHSLNTTLLTTMAILSAAM 160
Cdd:pfam00361  81 llllfllILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYglirrSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004  161 GGWMGLNQTQIRKILAFSSISHLGWMAIIIA----YNPKLTLLNFYLYSLMTAAAFLTF----HSTKSLKLSTLMTS-WT 231
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLCAgsviYRRVHTRNIRDYGGlAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 746770004  232 KTPTLNAALLLALLSLAGLPPLTGFLPKWLIIQ 264
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 10-266 1.13e-24

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 103.27  E-value: 1.13e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004  10 LLGTTITISSNHWIMAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQATASTLLLF-SSMVNAwSTGQWDITQL-- 85
Cdd:COG1007  112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGIaa 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004  86 ---TDPASCAILTTAIAM-------KLGLVPFHFWFPEVLQGSPLTTGLLLSTALK----FPPITLLYMTCHSLN---TT 148
Cdd:COG1007  191 alaAGGANSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaafAALLRLLVEAFPGLAadwQL 270

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004 149 LLTTMAILSAAMGGWMGLNQTQIRKILAFSSISHLGWMAI-IIAYNPK-LTLLNFYL--YSLMTAAAF-----LTFHSTK 219
Cdd:COG1007  271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLgLAAGTPLgVSAALFYLlaYLFMNLGAFavillLSRKGGE 350

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*..
gi 746770004 220 SLKLSTLMTSWTKTPTLNAALLLALLSLAGLPPLTGFLPKWLIIQEL 266
Cdd:COG1007  351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAA 397
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 9-263 6.94e-24

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 100.10  E-value: 6.94e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004   9 LLLGTTITISSNHWIMAWAGLEINTLAILPLI-SKSHHPRAIEAATKYFLVQATASTLLLFSSMVNAWSTGQWDI----- 82
Cdd:MTH00196   2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGCALLCGTTGGLHLsyinl 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004  83 --------TQLTDPASCAILTTAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTALKFPPITLLYMTchSLNTTLLTTMA 154
Cdd:MTH00196  82 vlnsgqsfSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSI--GLNVNILLIGG 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004 155 ILSAAMGGWMGLNQTQIRKILAFSSISHLGWMAIIIAYNP----KLTLLNFYLYSLMTAAAF---LTFHSTKSL--KLST 225
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSICVFsiiLALNVYKNLiiEFSG 239

                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 746770004 226 LMtswTKTPTLNAALLLALLSLAGLPPLTGFLPKWLII 263
Cdd:MTH00196 240 LS---RRLPILAITLALTFLSIAGIPPLVGFLGKWLIL 274
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
10-275 4.18e-22

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 96.04  E-value: 4.18e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004  10 LLGTTITISSNHWIMAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQATASTLLLF-SSMVNAwSTGQWDITQLTD 87
Cdd:PRK05777 113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYgMSLLYG-ATGSLSFAGIAK 191

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004  88 P------------ASCAILTTAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTALK---FPPIT-LLYMTCHSLNTT--- 148
Cdd:PRK05777 192 AladgsgnsllllFGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaaFAVLLrLLVVAFGGLSEDwqq 271

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004 149 LLTTMAILSAAMGGWMGLNQTQIRKILAFSSISHLGWMAIIIAYNPKLTL--LNFYL--YSLMTAAAF--LTFHSTKSLK 222
Cdd:PRK05777 272 VLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsaVLFYLlaYLFMTLGAFgvISLLRRKGGE 351

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 746770004 223 LSTLmTSWT----KTPTLNAALLLALLSLAGLPPLTGFLPKWLIIQELTKQSMAPAA 275
Cdd:PRK05777 352 AESI-SDFAglskRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLA 407
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 4-263 9.85e-22

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 95.08  E-value: 9.85e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004   4 IFITSLLLGTTITISSNHWIMAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQATASTLLLFSSMVNAWSTGQWDI 82
Cdd:MTH00199 101 ILILIVALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSI 180

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004  83 ----TQLTDPASCAILTTAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTALKFPPITLLYMTCHSLNTTLLTtmAILSA 158
Cdd:MTH00199 181 qginSILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSI 258

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004 159 AMGGWMGLNQTQIRKILAFSSISHLGWMAIIIAYNP----KLTLLNFYLYSLMTAAAF---LTFHSTKSLKLSTLMTSwT 231
Cdd:MTH00199 259 IYGAIGALNQTKIKRLLAYSGIGHMGFILFGVAIGSfesiQASLIYMIIYVIMSICSFsiiLSLKLTKGLIVEVSGLS-R 337

                        250       260       270
                 ....*....|....*....|....*....|..
gi 746770004 232 KTPTLNAALLLALLSLAGLPPLTGFLPKWLII 263
Cdd:MTH00199 338 KNPVIALTLALTFLSIAGIPPLAGFLSKWLIL 369
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 10-271 1.06e-21

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 95.01  E-value: 1.06e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004   10 LLGTTITISSNHWIMAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQATASTLLLFSSMVNAWSTGQWDITQLTDP 88
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004   89 ASCAILT------------TAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTALK---FPPITLLYMTC----HSLNTTL 149
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaiFAVFLRLFLYIlfgfSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004  150 LTTMAILSAAMGGWMGLNQTQIRKILAFSSISHLGWMAIIIAYNPKLTLLN--FYL--YSLMTAAAFLTFHSTKSLK--- 222
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLSLLRSYKdew 351

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 746770004  223 ---LSTLMTSWTKTPTLNAALLLALLSLAGLPPLTGFLPKWLIIQELTKQSM 271
Cdd:TIGR01770 352 ieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGL 403
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 9-278 3.44e-19

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 87.12  E-value: 3.44e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004   9 LLLGTTITISSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQATASTLLLFSSMVNAWSTGQWDITQL--- 85
Cdd:COG0651  116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLaar 195

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004  86 -------TDPASCAILTTAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTALK--------------FPPITLLYMTchs 144
Cdd:COG0651  196 laeldpgLLLAAFALLLVGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLTkvgvyailrvltllFGADPALFLG--- 272

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004 145 lntTLLTTMAILSAAMGGWMGLNQTQIRKILAFSSISHLGWMAIIIAYNPKLTLLNFYLY----SLMTAAAFLT----FH 216
Cdd:COG0651  273 ---TLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHllnhALAKALLFLAagaiER 349

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 746770004 217 STKSLKLSTLMTSWTKTPTLNAALLLALLSLAGLPPLTGFLPKWLIIQELTKQSMAPAAAMI 278
Cdd:COG0651  350 ATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVL 411
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 11-206 4.61e-15

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 75.67  E-value: 4.61e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004  11 LGTTITISSNHWIMAWAGLEINTLAILPLISKSHHPRAI---------EAATKYFLVQATASTLLLFSSMVNAWSTGQ-- 79
Cdd:MTH00198 199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNeg 278

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004  80 ------------WDITQLTDPASCAILTTAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTALKFPPITLLymTCHSLNT 147
Cdd:MTH00198 279 mlgtilsatletTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILL--TSLVITS 356

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 746770004 148 TLLTTMAILSAAMGGWMGLNQTQIRKILAFSSISHLGWMAIIIAYNPKLTLLNFYLYSL 206
Cdd:MTH00198 357 KLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYAV 415
ndhB CHL00049
NADH dehydrogenase subunit 2
 3-259 1.51e-13

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 70.80  E-value: 1.51e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004   3 LIFITSLLLGTTITISSNHWIMAWAGLEINTLAILPLISKSHHP-RAIEAATKYFLVQATASTLLLFS-SMVNAWSTGQW 80
Cdd:CHL00049 114 LLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTKKDvRSNEATMKYLLMGGASSSILVYGfSWLYGLSGGEI 193

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004  81 DI---------TQLTDPASCAI----LTTAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTALKFPPITLLYMTCH---- 143
Cdd:CHL00049 194 ELqeivnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAASALATRIFDipfy 273

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004 144 SLNT---TLLTTMAILSAAMGGWMGLNQTQIRKILAFSSISHLGWMAI-IIAYNPK------LTLLNFYLY-SLMTAAAF 212
Cdd:CHL00049 274 FSSNewhLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIgIIVGDSNdgyasmITYMLFYIFmNLGTFACI 353

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*...
gi 746770004 213 LTFHS-TKSLKLSTLMTSWTKTPTLNAALLLALLSLAGLPPLTGFLPK 259
Cdd:CHL00049 354 VLFGLrTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGIPPLAGFFGK 401
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
46-213 8.67e-13

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 68.54  E-value: 8.67e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004  46 PRAIEAATKYFLVQATASTLLLF-SSMVNAWSTGQwdiTQLTDPAScAILTTA--------------IAMKLGLVPFHFW 110
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGS---TQLSAIAL-ALITSPslglalalvfviagIAFKISAVPFHQW 232

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004 111 FPEVLQGSPLTTGLLLSTALK---FPPITLLYMTCHSLNTT----LLTTMAILSAAMGGWMGLNQTQIRKILAFSSISHL 183
Cdd:PRK02504 233 TPDVYEGSPTPVVAFLSVGSKaagFALAIRLLVTAFPSFDEqwklLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQA 312

                        170       180       190
                 ....*....|....*....|....*....|....
gi 746770004 184 GWMAI--IIAYNPKLTLLNFYL--YSLMTAAAFL 213
Cdd:PRK02504 313 GFVMIglVAGTEAGYASMVFYLlaYLFMNLGAFA 346
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 29-262 2.60e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 60.88  E-value: 2.60e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004  29 LEINTLAILPLIS-KSHHPRAIEAATKYFLVQATASTLLLFSSmvnAWSTGQWDI-------------TQLTDPASCAIL 94
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGI---ALLYGQYGTlnmaylavkmsenPTVVAKIALALF 226

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004  95 TTAIAMKLGLVPFHFWFPEVLQGSP--LTTGLLLSTALKFPPITLLYMTCHSLNTTLLTT------MAILSAAMGGWMGL 166
Cdd:PRK08376 227 IAGLAMKSGAVPVHMWLPDAYPAAPssISAMLLVIKQAGLYALARVLFSIYGPAINLATVgwviiiLGCLTMFVGVAMAV 306

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004 167 NQTQIRKILAFSSISHLGWMAI-----IIAY-NPKLT----------LLNFYLYSLMTAAAFLT----FHSTKSLKLSTL 226
Cdd:PRK08376 307 VQKDVKRLLAYHSVSQIGYMLLglgvgLAALgDPAMAsygeialaggIYHIVNHALYKALLFLTagavIYETGTRNLNEL 386

                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 746770004 227 MTSWTKTPTLNAALLLALLSLAGLPPLTGFLPKWLI 262
Cdd:PRK08376 387 GGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 29-278 4.91e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 60.28  E-value: 4.91e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004  29 LEINTLAILPLISKSHHPRAIEAATKYFLVQATASTLLLFSSMVNAWSTGQWDITQLTD--PASCAILT------TAIAM 100
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAGalAENPTVVTafgfvlLALAL 214

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004 101 KLGLVPFHFWFPEVLQG-SPLTTGLLLSTALKFP--PITLLYMTCHSLNT-------TLLTTMAILSAAMGGWMGLNQTQ 170
Cdd:PRK08375 215 KAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAvyALIRIYFTVFGGDFrfalglgWLLAVLALLSMLVGSLAALGQDD 294

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004 171 IRKILAFSSISHLGWMAIIIAYNPKLTLLN--FYL--YSLMTAAAFL-------TFHSTKSLKLSTLMTswtKTPTLNAA 239
Cdd:PRK08375 295 VKRVLAYSTVSQMGYILLGLALLTPLALAAglLHLlhHALMKGALFLaagaievTYGTRRLSELSGLGR---RMPLTAAA 371

                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 746770004 240 LLLALLSLAGLPPLTGFLPKWLIIQELTKQSMAPAAAMI 278
Cdd:PRK08375 372 FAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVL 410
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 45-191 2.04e-09

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 58.17  E-value: 2.04e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004  45 HPRAIEAATKYFLVQATASTLLLFSSMVNAWSTGQW--DITQLTD---PASCAILT-----TAIAMKLGLVPFHFWFPEV 114
Cdd:COG1008  156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAaplPLTAQLLLflaffIAFAVKVPMFPFHTWLPDA 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004 115 LQGSPLTTGLLLSTALK--------------FPPITLLYMTchslnttLLTTMAILSAAMGGWMGLNQTQIRKILAFSSI 180
Cdd:COG1008  236 HVEAPTAGSVLLAGVLLkmggygllrfalplFPEASAYFAP-------LLAALGVIGIIYGALVALAQTDLKRLIAYSSV 308

                        170
                 ....*....|.
gi 746770004 181 SHLGWMAIIIA 191
Cdd:COG1008  309 SHMGFVLLGIF 319
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 4-212 6.38e-09

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 56.86  E-value: 6.38e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004   4 IFITSLLLgttiTISSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLV------QATASTLLLFSS----MVN 73
Cdd:PRK06458 116 LFLFTMLL----ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIIcsvgvaFALFGTILVYANaatvMGD 191

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004  74 AWSTGQWdiTQLTDPASC---AILTTAIAM-------KLGLVPFHFWFPEVLQGSP-----LTTGLLLSTALkFPPITLL 138
Cdd:PRK06458 192 GEMAILW--TELLKHASLldpTLMKLAFVFlligfgtKVGLFPMHAWLPDAHSEAPspvsaLLSGVLLNVAL-YAVLRYY 268

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004 139 YMTCHSLNT----TLLTTMAILSAAMGGWMGLNQTQIRKILAFSSISHLGWMAIIIAYNPKL----TLLNFYLYSLMTAA 210
Cdd:PRK06458 269 ILIDAAIGSdfpgRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIGGPLgifaALLHMLNHSLTKSA 348


                 ..
gi 746770004 211 AF 212
Cdd:PRK06458 349 IF 350
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 46-191 1.90e-08

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 55.33  E-value: 1.90e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004   46 PRAIEAATKYFLVQATASTLLLFS----SMVNAWSTGQWDITQLTDPASC------AILTtAIAMKLGLVPFHFWFPEV- 114
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAilglYFLGGGTFDLLELLNLPLPFGVqtwlflAFFI-AFAVKVPLFPLHTWLPDAh 230

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004  115 ----LQGSPLTTGLLLSTALK---------FPPITLLYMtchslntTLLTTMAILSAAMGGWMGLNQTQIRKILAFSSIS 181
Cdd:TIGR01972 231 veapTAGSVILAGVLLKMGTYgflrfnlplFPDASLYFA-------PVLAALGVIAIIYGALIALAQTDIKRLIAYSSIS 303

                         170
                  ....*....|
gi 746770004  182 HLGWMAIIIA 191
Cdd:TIGR01972 304 HMGFVLLGIF 313
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 9-198 3.60e-08

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 54.38  E-value: 3.60e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004   9 LLLGTTITISSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQATA------STLLLFSSMVNAWSTGQWDI 82
Cdd:PRK08676 111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004  83 TQLTDPA----------SCAILTTAIAMKLGLVPFHFWFPEVLQGSP-LTTGLLLSTALKFPPITLLYMTC-------HS 144
Cdd:PRK08676 191 TELAAHAsllspsvlgaSFLFIFIGFLAKSGLVPFHTWLPAAYAKAPsVVSALLSGTVLNIGIYGILRLSAllrqsgaAE 270

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 746770004 145 LNTTLLTTMAILSAAMGGWMGLNQTQIRKILAFSSISHLGWMAIIIAYNPKLTL 198
Cdd:PRK08676 271 QFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLAL 324
PRK12650 PRK12650
DUF4040 family protein;
25-259 3.98e-07

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 51.58  E-value: 3.98e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004  25 AWaglEINTLAILPLISKSHhPRAIEAATKYFLVQATASTLLLFSSMVNAWSTGQWDITQ-LTDP--ASCAILTTAIAM- 100
Cdd:PRK12650 138 AW---ELVSLASFFLIARSG-SGGEAGSIRTLILTFFGGLTLLAAVAIAATQTGTTSLSGiLHSDvwAEKPGLTTVVAVl 213

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004 101 -------KLGLVPFHFWFPEVLQGSPLTTGLLLSTA---------LKFPPITLLYMTCHslntTLLTTMAILSAAMGGWM 164
Cdd:PRK12650 214 iavaaftKSAQFPFHFWLPEAMAAITPVSAFLHAAAvvkagiyllLRFSPVFHDVAVWN----WLLIIVGMITALMGAVF 289

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004 165 GLNQTQIRKILAFSSISHLGWMAIIIAYNPKLTL----LNFYLYSLMTAAAFLTF----HSTKSLKLSTLMTSWTKTPTL 236
Cdd:PRK12650 290 AVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALtaavVHTLAHALFKSSLFMLIgvvdHQAGTRDIRRLGSLWRRMPFT 369

                        250       260
                 ....*....|....*....|...
gi 746770004 237 NAALLLALLSLAGLPPLTGFLPK 259
Cdd:PRK12650 370 FVSVTIAALSMAAVPPLFGFVSK 392
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 30-278 1.22e-06

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 50.00  E-value: 1.22e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004  30 EINTLAILPLISKSHHpRAIEAATKYFLVQATASTLLLFSSMVNAWSTGQWDIT-------QLTDPASCAILTTAIA--- 99
Cdd:PRK08668 128 EIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFAdisqgliNDTSTGFALIVFLFLLafg 206

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004 100 -MKLGLVPFHFWFPEVLQGSPLTTGLLLSTALK-------------FPPITLLY----MTCHSLNTTLLTTMAILSAAMG 161
Cdd:PRK08668 207 vAKAGIFPLHVWAPDAYSEAPQSFSAVLSGQLSklgaygfllvlyvLPGTKLFSefgtYRGVPLFNYILAWLGNISIIVG 286

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004 162 GWMGLNQTQIRKILAFSSISHLGWMAIIIAYNPKLT----LLNFYLYSLMTAAAFLTF----HSTKSLKLSTLMTSWTKT 233
Cdd:PRK08668 287 TLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGfaggLFHVFNHALFKGLFFLIFaaviYRTGTTKISEMGGLIEKM 366

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 746770004 234 PTLNAALLLALLSLAGLPPLTGFLPKWLIIQELTKQSMAPAAAMI 278
Cdd:PRK08668 367 PFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMA 411
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 3-186 8.46e-06

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 47.07  E-value: 8.46e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004   3 LIFITSLLLgttITISSNHWIMaWAGLEINTLAILPLISKSHH-PRAIEAATKYFLVQATASTLLLFSSMVNAWSTGQWD 81
Cdd:COG1009  118 LLFMAAMLG---LVLSDNLLLL-FVFWELVGLCSYLLIGFWYEkPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLN 193

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004  82 ITQLTDPASCAI---LTTAIAM--------KLGLVPFHFWFPEVLQG----SPL-------TTG----LLLSTALKFPPI 135
Cdd:COG1009  194 FSELLAAAPTILsspLLTLILLllllgafgKSAQFPLHFWLPDAMEGptpvSALlhaatmvKAGvyllARLSPLFALSPV 273

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 746770004 136 TLlymtchslntTLLTTMAILSAAMGGWMGLNQTQIRKILAFSSISHLGWM 186
Cdd:COG1009  274 WL----------TVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYM 314
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
30-264 9.60e-06

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 46.95  E-value: 9.60e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004  30 EINTLAILPLISKSHHPRAIEAATKYFLVQATASTLLLFSSMVNAWSTGQWDITQ-----LTDPASCAILTtAIAMKL-- 102
Cdd:PRK06277 130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDihnalLVNPTSPVIYG-GLLLLIfg 208

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004 103 -----GLVPFHFWFPEVLQGSPLTTGLLLSTALKFPPITL---LYMTCHSLN-----TTLLTTMAILSAAMGGWMGLNQT 169
Cdd:PRK06277 209 llygsGLPPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALmlvIFKLFGGLSyfpsaQGVLIALSVLAMVFGVVMALLQT 288

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004 170 QIRKILAFSSISHLGWMAIIIAYNPKLTL-------LNFYLYslmTAAAFLTFHS----TKSLKLSTLMTSWTKTPTLNA 238
Cdd:PRK06277 289 DYKRLLAYHAISQGGYVAAGLALGTPLGIvagifhaINHVIY---KSALFLGAGIvsyrTKTSNLRKLGGLLPVMPVVAF 365

                        250       260
                 ....*....|....*....|....*.
gi 746770004 239 ALLLALLSLAGLPPLTGFLPKWLIIQ 264
Cdd:PRK06277 366 MVLCAKLAISGVPPFNGFQSKLMLAQ 391
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 46-191 2.21e-05

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 45.58  E-value: 2.21e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004  46 PRAIEAATKYFLVQATASTLLLFSSM----VNAWSTGQWDITQLTDPASCAILTT--------AIAMKLGLVPFHFWFPE 113
Cdd:PRK05846 157 KNRIYAATKFFLYTLLGSLLMLVAIIylvvVYYNATGTFDIADLLNLPLPPGVQYwlflaffiAFAVKMPMFPLHTWLPD 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004 114 VLQ-----GSPLTTGLLLSTA----LKFPpITLLYMTCHSLnTTLLTTMAILSAAMGGWMGLNQTQIRKILAFSSISHLG 184
Cdd:PRK05846 237 AHVqaptaGSVLLAGILLKMGayglLRFS-LPLFPDASHEF-APIIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMG 314


                 ....*..
gi 746770004 185 WMAIIIA 191
Cdd:PRK05846 315 FVTLGIF 321
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
51-199 3.43e-05

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 45.08  E-value: 3.43e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004  51 AATKYFLVQATASTLLLFSSMVNAWSTG--QWDITQL---TDPASCAILTTA-----IAMKLGLVPFHFWFPEV-LQGSP 119
Cdd:PRK06473 158 AATKFLLYTAISGILILVSFLGLVWLSGasSFDYEPLrshTLPLSTQLLLLApilvgFGIKIPLVPFHTWLPDAhVEAST 237

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004 120 LTTGLLLSTALKFPPITLL------YMTCHSLNTTLLTTMAILSAAMGGWMGLNQTQIRKILAFSSISHLGWMAIIIAYN 193
Cdd:PRK06473 238 PVSVLLAGVLLKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILLAAAAA 317


                 ....*.
gi 746770004 194 PKLTLL 199
Cdd:PRK06473 318 TPLSIL 323
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 29-267 1.38e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 43.40  E-value: 1.38e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004  29 LEINTLAILPLISKSHHPRAIEAATKYFLVQATASTLLLFSSMVNAWSTGQWDITQLT--DPASCAILTTAIAMKLGLVP 106
Cdd:PRK07234 123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLAtaDPEAFALIALGLLVKGGIFV 202

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004 107 FHFWFPEVLQGSPLTTGLLLSTALKFPPITLLYMTCHSLNTT--LLTTMAILSAAMGGWMGLNQTQIRKILAFSSISHLG 184
Cdd:PRK07234 203 SGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVRCALDVPGLdlIVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQLG 282

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004 185 WmaIIIAynPKLTLLNFYLYSLMTAAAFLTFHSTKSLKLSTLMTSWTKTPTLNAALLLALLSLAGlPPLTGFLPKWLIIQ 264
Cdd:PRK07234 283 F--ILAA--PLVGGLYALAHGLVKSTLFLCAGALPSRNFTELISQMLGIGKWIPLTMASFSIAGF-PLLAGFVSKVLTLK 357


                 ...
gi 746770004 265 ELT 267
Cdd:PRK07234 358 NLL 360
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 76-259 2.53e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 42.60  E-value: 2.53e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004  76 STGQWDITQL-TDPASCAILTTAIAM-------KLGLVPFHFWFPEVLQGSPLTTGLLLSTALKFPPITLLYMTCHSLNT 147
Cdd:PRK12644 183 AAGTYRLSELlADPPTGPAVSVAVVLilvgalsKSAIVPFHFWLPGAMAAPTPVSAYLHAAAMVKAGIYLVARLAPGFAD 262

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004 148 T-----LLTTMAILSAAMGGWMGLNQTQIRKILAFSSISHLGWMAIIIAYNPK------LTLLnfYLYSLMTAAAFLTF- 215
Cdd:PRK12644 263 VpvwrpTVLVLGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRdaalagLAML--LAHALFKAALFLVVg 340

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 746770004 216 ---HSTKSLKLSTLMTSWTKTPTLNAALLLALLSLAGLPPLTGFLPK 259
Cdd:PRK12644 341 iidHSTGTRDIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAK 387
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 55-184 2.54e-04

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 42.41  E-value: 2.54e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004  55 YFLVQATASTLLLFSSMVNAW-STGQWDITQLTDPA-----SCAILTTAIAMKLGLVPFHFWFPEVLQGSP-----LTTG 123
Cdd:PRK08667 166 FYFVMTQLSTVFLMLGIIVLFiQTGSFELSPLGASAgilslVFLLLFLGFGIKAGIIPFHKWLPYAHPASPsnvsaLMSG 245

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 746770004 124 LLLSTAL-KFPPITLLYMTCHSLNTTLLTTMAILSAAMGGWMGLNQTQIRKILAFSSISHLG 184
Cdd:PRK08667 246 VMLKVAVyGLVRFLMDVLSPELWWGVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIG 307
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 29-263 2.79e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 42.41  E-value: 2.79e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004  29 LEINTLAILPLISKSHHPRAIEAATKYFLVQATASTLLLFSSMVNAWSTGQWDITQLTD-----PASCAI------LTTA 97
Cdd:PRK12662 139 LEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGIGFLYAITGTLNMGDMFLiiqdlPTNRAIqigvlfIMVG 218

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004  98 IAMKLGLVPFHFWFPEVLQGSPLTTGLLLS-TALK---FPPITLLYMTCHS--------LNTTLLTtMAILSAAMGGWMG 165
Cdd:PRK12662 219 LFIKAALFPFHKWLIQAYSEAPSFISVFFSgTSTKvmiYLIIRIVYDVFKAnfvfttlpFNNVFMI-LAALAIVFGSVLA 297

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004 166 LNQTQIRKILAFSSISHLGWMAIIIAYNPKLTLLNFYLY----SLMTAAAFLTFHSTK----SLKLSTLMTSWTKTPTLN 237
Cdd:PRK12662 298 ILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFMVSGSISyhfgTTKLEDCLNLWKSMPKIT 377

                        250       260
                 ....*....|....*....|....*.
gi 746770004 238 AALLLALLSLAGLPPLTGFLPKWLII 263
Cdd:PRK12662 378 LAFVLLSLSLIGMPPTSGFVAKWYIL 403
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
49-264 3.23e-04

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 42.24  E-value: 3.23e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004  49 IEAATKYFLVQATASTLLLFSSMVNAWSTGQWDIT----QLTDPASCAILTT-------AIAMKLGLVPFhFWFPEVLQG 117
Cdd:PRK12663 157 LRGAIKYVVLNLIGSWLFLLGIGLLYGTFGTLNMAhiamRLNDMGDTATLTTiallfllAFGMKAALFPF-MWLPAAYHT 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004 118 SPLTTGLLLSTALK-------FPPITLLYMTCHSLNTTLLTTMAILSAAMGGWMGLNQTQIRKILAFSSISHLGWMAIII 190
Cdd:PRK12663 236 PNTEVAALFAALLTkvgiyalIRVFTLLFPQERELLHPLLATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLGL 315

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004 191 AYNPKLTLLN--FYLYSLMTAAAFLTFHS------TKSLKLSTLMTSWTKTPTLNAALLLALLSLAGLPPLTGFLPKWLI 262
Cdd:PRK12663 316 ALGTPAGINGaiFYLVHDMVVKTALFLIAgslvrlTGYRSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLL 395


                 ..
gi 746770004 263 IQ 264
Cdd:PRK12663 396 VQ 397
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 51-191 3.63e-04

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 41.94  E-value: 3.63e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004  51 AATKYFLVQATASTLLLFSSMVNAWSTGQ--WDITQLTD---PASCAILT-----TAIAMKLGLVPFHFWFPEVL-QGSP 119
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGAksyPLALELLLyagflIAFGVKLPIFPLHTWLPDAHgEASA 217

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 746770004 120 LTTGLLLSTALKFPPITLLYMT------CHSLNTTLLTTMAILSAAMGGWMGLNQTQIRKILAFSSISHLGWMAIIIA 191
Cdd:PRK12561 218 PVSMILAGVLLKMGGYALIRFNvqmlpdAHVYFAPALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLLGIA 295
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 44-192 7.37e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 41.35  E-value: 7.37e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004  44 HHPRAIEAATKYFLVQATASTLLLFSSMVNAWSTGQWDI-TQLTDPA-------SCAILTTAIAMKLGLV------PFHF 109
Cdd:PRK12649 156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIaTILQDSElienikgHPLFLITLILIFIGAAaksaqgPFYI 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004 110 WFPEVLQGSPLTTGLLLSTALKFPPITLLYMTCHSLNTT-----LLTTMAILSAAMGGWMGLNQTQIRKILAFSSISHLG 184
Cdd:PRK12649 236 WLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQLA 315


                 ....*...
gi 746770004 185 WMAIIIAY 192
Cdd:PRK12649 316 YLMTMYGY 323
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 28-191 1.27e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 40.34  E-value: 1.27e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004  28 GLEINTLAILPLISKSHHPRAIEAATKYFLVQATASTLLLFS-SMVNAwSTGQWDITQL----------TDPASCAILTT 96
Cdd:PRK12665 139 GFEILLVASYVLLTLGATAARVRAGVTYVMVSMVSSLLFLIGiALVYA-ATGTLNMADLavrldelpsgTRTALFAVLLV 217

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004  97 AIAMKLGLVPFHFWFPEVLQG--SPLTT---GLLlsTALKFPPI----TLLYmTCHSLNTTLLTtMAILSAAMGGWMGLN 167
Cdd:PRK12665 218 AFGIKAAVFPLSFWLPDSYPTapAPVTAvfaGLL--TKVGVYAIirthTLLF-PGGGLDTLLMV-VALLTMVVGILGAIA 293

                        170       180
                 ....*....|....*....|....
gi 746770004 168 QTQIRKILAFSSISHLGWMAIIIA 191
Cdd:PRK12665 294 QSDIKRLLSFTLVSHIGYMVFGIA 317
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 105-262 2.55e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 39.52  E-value: 2.55e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004 105 VPFHFWFPEVLQG-SPLTTGLLLSTALKfPPITLLYMTCHSLNTT-----LLTTMAILSAAMGGWMGLNQTQIRKILAFS 178
Cdd:PRK12647 212 FPFHFWLPNAMEApTPVSAYLHSATMVK-AGIYLLARLNPVLGGTplwqtILPLFGGLTMLTGALLAVRQTDLKLILAYS 290

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004 179 SISHLGWMAIIIAYNPKLTLLNFYLY----SLMTAAAFLTF----HSTKSLKLSTLMTSWTKTPTLNAALLLALLSLAGL 250
Cdd:PRK12647 291 TVSALGTLVMLLGLGSELAIKAAVLFlvahSLYKGALFMVAgiidHETGTRDITKLGGLRRAMPITAAAALLAALSMAGL 370

                        170
                 ....*....|..
gi 746770004 251 PPLTGFLPKWLI 262
Cdd:PRK12647 371 PPLFGFLAKELI 382
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
9-213 6.33e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 38.14  E-value: 6.33e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004   9 LLLGTTITISSNHW---IMAWA--GLEINTLailpLISKSHHPRAIEAATKYFLVQATASTLLLFSSMVNAWSTGQWDIT 83
Cdd:PRK08168 109 VLAAVHLLVLSDHLlvlIAAWAaiSLALHRL----LCFYPDRPFARLAAHKKFIADRLAELLLLAAAALAYLEVGSLSLS 184

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004  84 QL-----------TDPASCAILTTAIAMKLGLVPFHFWFPEVLQgSPLTTGLLLSTA---------LKFPPITLLYMTCH 143
Cdd:PRK08168 185 ALwahlaaqgaspSLQAAALLLVLAVILKTAQLPVHGWLIQVME-APTPVSALLHAGvvnlggfvlIRFAPLLEQAPPAR 263

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 746770004 144 slntTLLTTMAILSAAMGGWMGLNQTQIRKILAFSSISHLGWMAIIIAYNP-KLTLLNFYLYSLMTAAAFL 213
Cdd:PRK08168 264 ----WLLVLVGLATAVLAGLVMLTRISIKVRLAWSTVAQMGFMLLECGLGLyELALLHLVAHSLYKAHAFL 330
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
51-199 7.15e-03

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 37.77  E-value: 7.15e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004  51 AATKYFLVQATASTLLLFSSMVNAWSTGQWD------ITQLTDPASCAILTTAI----AMKLGLVPFHFWFPEV-LQGSP 119
Cdd:PRK07363 158 ASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSfdydaiSTQNLSLNTQLILLTGLllgfGIKIPLVPLHTWLPDAyTEASP 237

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004 120 LTTGLLLSTALKFPPITL------LYMTCHSLNTTLLTTMAILSAAMGGWMGLNQTQIRKILAFSSISHLGWMAIIIAYN 193
Cdd:PRK07363 238 AVAILLGGVLAKLGTYGLlrfglqLFPQTWSLVAPGLAIIGTISVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAAG 317


                 ....*.
gi 746770004 194 PKLTLL 199
Cdd:PRK07363 318 TQLSLL 323
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 97-190 7.33e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 37.98  E-value: 7.33e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 746770004  97 AIAMKLGLVPFHFWFPEV-----LQGSPLTTGLLLSTA------LKFPpitLLYMTCHSLNTTLLtTMAILSAAMGGWMG 165
Cdd:MTH00226 239 AMAVKIPIFPFHIWLPKAhveapVAGSVLLAGILLKLGgyglvrLSWP---ILPLGAQNLAPAVI-AMGIVGIVYGSFAT 314

                         90       100
                 ....*....|....*....|....*
gi 746770004 166 LNQTQIRKILAFSSISHLGWMAIII 190
Cdd:MTH00226 315 CRQIDVKRLVAYSSVAHMGLVSITL 339
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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