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Conserved domains on  [gi|749403660|gb|AJF20368|]
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cytochrome b, partial (mitochondrion) [Malacomys longipes]

Protein Classification

cytochrome b( domain architecture ID 11475898)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-352 0e+00

cytochrome b; Provisional


:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 744.15  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660   1 IINHSFIDLPAPSNISSWWNFGSLLGICLMVQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFI 80
Cdd:MTH00100  13 IINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFI 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660  81 CLFLHVGRGIYYGSYTFLETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAVPYIGTTLVEWIWGGFSVDK 160
Cdd:MTH00100  93 CLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDK 172

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660 161 ATLTRFFAFHFILPFIILALVIVHLLFLHETGSNNPTGLNSDSDKIPFHPYYTIKDILGLFIMILLLMTLVLFFPDLLGD 240
Cdd:MTH00100 173 ATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGD 252

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660 241 PDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALIMSILVLALLPFLHTSKQRSLTFRPITQILKWILVANL 320
Cdd:MTH00100 253 PDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADL 332

                        330       340       350
                 ....*....|....*....|....*....|..
gi 749403660 321 LILTWIGGQPVEHPFIIIGQLASISYFSIILI 352
Cdd:MTH00100 333 LTLTWIGGQPVEHPFIIIGQLASILYFLIILI 364
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-352 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 744.15  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660   1 IINHSFIDLPAPSNISSWWNFGSLLGICLMVQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFI 80
Cdd:MTH00100  13 IINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFI 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660  81 CLFLHVGRGIYYGSYTFLETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAVPYIGTTLVEWIWGGFSVDK 160
Cdd:MTH00100  93 CLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDK 172

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660 161 ATLTRFFAFHFILPFIILALVIVHLLFLHETGSNNPTGLNSDSDKIPFHPYYTIKDILGLFIMILLLMTLVLFFPDLLGD 240
Cdd:MTH00100 173 ATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGD 252

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660 241 PDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALIMSILVLALLPFLHTSKQRSLTFRPITQILKWILVANL 320
Cdd:MTH00100 253 PDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADL 332

                        330       340       350
                 ....*....|....*....|....*....|..
gi 749403660 321 LILTWIGGQPVEHPFIIIGQLASISYFSIILI 352
Cdd:MTH00100 333 LTLTWIGGQPVEHPFIIIGQLASILYFLIILI 364
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
4-352 2.69e-133

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 385.68  E-value: 2.69e-133
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660   4 HSFIDLPAPSNISSWWNFGSLLGICLMVQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLF 83
Cdd:COG1290   25 REHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVY 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660  84 LHVGRGIYYGSYTF---LeTWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAVPYIGTTLVEWIWGGFSVDK 160
Cdd:COG1290  105 LHMFRGFFYGAYKKpreL-NWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGD 183

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660 161 ATLTRFFAFH-FILPFIILALVIVHLLFLHETGSNNPTG----LNSDSDKIPFHPYYTIKDILGLFIMILLLMTLVLFFP 235
Cdd:COG1290  184 ATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFP 263

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660 236 DllGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALIMSILVLALLPFLHTSKQRSLTFRPITQILK 313
Cdd:COG1290  264 I--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALG 341

                        330       340       350
                 ....*....|....*....|....*....|....*....
gi 749403660 314 WILVANLLILTWIGGQPVehPFIIIGQLASISYFSIILI 352
Cdd:COG1290  342 VAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLI 378
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-194 3.15e-93

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 276.56  E-value: 3.15e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660   1 IINHSFIDLPAPSNISSWWNFGSLLGICLMVQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFI 80
Cdd:cd00284    5 EVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFL 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660  81 CLFLHVGRGIYYGSY--TFLETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAVPYIGTTLVEWIWGGFSV 158
Cdd:cd00284   85 MLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSV 164

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 749403660 159 DKATLTRFFAFHFILPFIILALVIVHLLFLHETGSN 194
Cdd:cd00284  165 DNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
6-192 7.25e-85

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 255.00  E-value: 7.25e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660    6 FIDLPAPSNISSWWNFGSLLGICLMVQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLH 85
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660   86 VGRGIYYG--SYTFLETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAVPYIGTTLVEWIWGGFSVDKATL 163
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 749403660  164 TRFFAFHFILPFIILALVIVHLLFLHETG 192
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 216-306 3.25e-09

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 55.19  E-value: 3.25e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660  216 DILGLFIMILL-----LMTLVLFFPDLLGDPdnytpANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALIMSILVLA 290
Cdd:TIGR01156  35 DLLYIFPVVILgtiacVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLL 109

                          90
                  ....*....|....*.
gi 749403660  291 LLPFLHTSKQRSLTFR 306
Cdd:TIGR01156 110 TVPFIENVNKFQNPFR 125
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-352 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 744.15  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660   1 IINHSFIDLPAPSNISSWWNFGSLLGICLMVQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFI 80
Cdd:MTH00100  13 IINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFI 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660  81 CLFLHVGRGIYYGSYTFLETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAVPYIGTTLVEWIWGGFSVDK 160
Cdd:MTH00100  93 CLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDK 172

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660 161 ATLTRFFAFHFILPFIILALVIVHLLFLHETGSNNPTGLNSDSDKIPFHPYYTIKDILGLFIMILLLMTLVLFFPDLLGD 240
Cdd:MTH00100 173 ATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGD 252

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660 241 PDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALIMSILVLALLPFLHTSKQRSLTFRPITQILKWILVANL 320
Cdd:MTH00100 253 PDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADL 332

                        330       340       350
                 ....*....|....*....|....*....|..
gi 749403660 321 LILTWIGGQPVEHPFIIIGQLASISYFSIILI 352
Cdd:MTH00100 333 LTLTWIGGQPVEHPFIIIGQLASILYFLIILI 364
CYTB MTH00119
cytochrome b; Provisional
 1-352 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 678.55  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660   1 IINHSFIDLPAPSNISSWWNFGSLLGICLMVQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFI 80
Cdd:MTH00119  14 IINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFI 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660  81 CLFLHVGRGIYYGSYTFLETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAVPYIGTTLVEWIWGGFSVDK 160
Cdd:MTH00119  94 CIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDN 173

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660 161 ATLTRFFAFHFILPFIILALVIVHLLFLHETGSNNPTGLNSDSDKIPFHPYYTIKDILGLFIMILLLMTLVLFFPDLLGD 240
Cdd:MTH00119 174 PTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGD 253

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660 241 PDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALIMSILVLALLPFLHTSKQRSLTFRPITQILKWILVANL 320
Cdd:MTH00119 254 PENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANL 333

                        330       340       350
                 ....*....|....*....|....*....|..
gi 749403660 321 LILTWIGGQPVEHPFIIIGQLASISYFSIILI 352
Cdd:MTH00119 334 LILTWIGSQPVEHPFIIIGQLASILYFTILLI 365
CYTB MTH00131
cytochrome b; Provisional
 1-352 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 664.81  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660   1 IINHSFIDLPAPSNISSWWNFGSLLGICLMVQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFI 80
Cdd:MTH00131  13 IANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFI 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660  81 CLFLHVGRGIYYGSYTFLETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAVPYIGTTLVEWIWGGFSVDK 160
Cdd:MTH00131  93 CIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDN 172

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660 161 ATLTRFFAFHFILPFIILALVIVHLLFLHETGSNNPTGLNSDSDKIPFHPYYTIKDILGLFIMILLLMTLVLFFPDLLGD 240
Cdd:MTH00131 173 ATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGD 252

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660 241 PDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALIMSILVLALLPFLHTSKQRSLTFRPITQILKWILVANL 320
Cdd:MTH00131 253 PDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADV 332

                        330       340       350
                 ....*....|....*....|....*....|..
gi 749403660 321 LILTWIGGQPVEHPFIIIGQLASISYFSIILI 352
Cdd:MTH00131 333 LILTWIGGMPVEHPFIIIGQVASVLYFSLFLV 364
CYTB MTH00074
cytochrome b; Provisional
 1-352 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 648.66  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660   1 IINHSFIDLPAPSNISSWWNFGSLLGICLMVQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFI 80
Cdd:MTH00074  14 IINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFI 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660  81 CLFLHVGRGIYYGSYTFLETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAVPYIGTTLVEWIWGGFSVDK 160
Cdd:MTH00074  94 CIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDK 173

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660 161 ATLTRFFAFHFILPFIILALVIVHLLFLHETGSNNPTGLNSDSDKIPFHPYYTIKDILGLFIMILLLMTLVLFFPDLLGD 240
Cdd:MTH00074 174 ATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGD 253

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660 241 PDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALIMSILVLALLPFLHTSKQRSLTFRPITQILKWILVANL 320
Cdd:MTH00074 254 PDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVANT 333

                        330       340       350
                 ....*....|....*....|....*....|..
gi 749403660 321 LILTWIGGQPVEHPFIIIGQLASISYFSIILI 352
Cdd:MTH00074 334 LILTWIGGQPVEDPFIEIGQAASILYFLLFII 365
CYTB MTH00191
cytochrome b; Provisional
 1-352 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 638.11  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660   1 IINHSFIDLPAPSNISSWWNFGSLLGICLMVQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFI 80
Cdd:MTH00191  10 IVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFI 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660  81 CLFLHVGRGIYYGSYTFLETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAVPYIGTTLVEWIWGGFSVDK 160
Cdd:MTH00191  90 CIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDN 169

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660 161 ATLTRFFAFHFILPFIILALVIVHLLFLHETGSNNPTGLNSDSDKIPFHPYYTIKDILGLFIMILLLMTLVLFFPDLLGD 240
Cdd:MTH00191 170 ATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGD 249

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660 241 PDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALIMSILVLALLPFLHTSKQRSLTFRPITQILKWILVANL 320
Cdd:MTH00191 250 PENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANF 329

                        330       340       350
                 ....*....|....*....|....*....|..
gi 749403660 321 LILTWIGGQPVEHPFIIIGQLASISYFSIILI 352
Cdd:MTH00191 330 ILLTWLGGQPVEDPFILLGQISSFLYFFLFLL 361
CYTB MTH00156
cytochrome b; Provisional
 1-352 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 629.51  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660   1 IINHSFIDLPAPSNISSWWNFGSLLGICLMVQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFI 80
Cdd:MTH00156   3 IINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFI 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660  81 CLFLHVGRGIYYGSYTFLETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAVPYIGTTLVEWIWGGFSVDK 160
Cdd:MTH00156  83 CIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDN 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660 161 ATLTRFFAFHFILPFIILALVIVHLLFLHETGSNNPTGLNSDSDKIPFHPYYTIKDILGLFIMILLLMTLVLFFPDLLGD 240
Cdd:MTH00156 163 ATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGD 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660 241 PDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALIMSILVLALLPFLHTSKQRSLTFRPITQILKWILVANL 320
Cdd:MTH00156 243 PENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIV 322

                        330       340       350
                 ....*....|....*....|....*....|..
gi 749403660 321 LILTWIGGQPVEHPFIIIGQLASISYFSIILI 352
Cdd:MTH00156 323 ILLTWIGARPVEEPYILTGQILTILYFLYFII 354
CYTB MTH00145
cytochrome b; Provisional
 1-352 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 597.27  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660   1 IINHSFIDLPAPSNISSWWNFGSLLGICLMVQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFI 80
Cdd:MTH00145  14 VVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFI 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660  81 CLFLHVGRGIYYGSYTFLETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAVPYIGTTLVEWIWGGFSVDK 160
Cdd:MTH00145  94 CIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGN 173

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660 161 ATLTRFFAFHFILPFIILALVIVHLLFLHETGSNNPTGLNSDSDKIPFHPYYTIKDILGLFIMILLLMTLVLFFPDLLGD 240
Cdd:MTH00145 174 ATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGD 253

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660 241 PDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALIMSILVLALLPFLHTSKQRSLTFRPITQILKWILVANL 320
Cdd:MTH00145 254 PENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNF 333

                        330       340       350
                 ....*....|....*....|....*....|..
gi 749403660 321 LILTWIGGQPVEHPFIIIGQLASISYFSIILI 352
Cdd:MTH00145 334 FILTWIGACPVEEPYETIGQVFTVLYFLFFLI 365
CYTB MTH00034
cytochrome b; Validated
 1-352 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 581.66  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660   1 IINHSFIDLPAPSNISSWWNFGSLLGICLMVQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFI 80
Cdd:MTH00034  13 ILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFI 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660  81 CLFLHVGRGIYYGSYTFLETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAVPYIGTTLVEWIWGGFSVDK 160
Cdd:MTH00034  93 CLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDN 172

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660 161 ATLTRFFAFHFILPFIILALVIVHLLFLHETGSNNPTGLNSDSDKIPFHPYYTIKDILGLFIMILLLMTLVLFFPDLLGD 240
Cdd:MTH00034 173 ATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALND 252

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660 241 PDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALIMSILVLALLPFLHTSKQRSLTFRPITQILKWILVANL 320
Cdd:MTH00034 253 PENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIATF 332

                        330       340       350
                 ....*....|....*....|....*....|..
gi 749403660 321 LILTWIGGQPVEHPFIIIGQLASISYFSIILI 352
Cdd:MTH00034 333 FILTWIGSQPVEYPFILLGQVASVLYFSLFLF 364
CYTB MTH00016
cytochrome b; Validated
 1-352 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 560.45  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660   1 IINHSFIDLPAPSNISSWWNFGSLLGICLMVQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFI 80
Cdd:MTH00016  14 IMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFI 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660  81 CLFLHVGRGIYYGSYTFLETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAVPYIGTTLVEWIWGGFSVDK 160
Cdd:MTH00016  94 CLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDN 173

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660 161 ATLTRFFAFHFILPFIILALVIVHLLFLHETGSNNPTGLNSDSDKIPFHPYYTIKDILGLFIMILLLMTLVLFFPDLLGD 240
Cdd:MTH00016 174 ATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGD 253

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660 241 PDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALIMSILVLALLPFLHTSKQRSLTFRPITQILKWILVANL 320
Cdd:MTH00016 254 PENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVSNF 333

                        330       340       350
                 ....*....|....*....|....*....|..
gi 749403660 321 LILTWIGGQPVEHPFIIIGQLASISYFSIILI 352
Cdd:MTH00016 334 LLLTWIGGRPVEPPYEFLGQIFTVFYFFYFMI 365
CYTB MTH00022
cytochrome b; Validated
 1-352 7.68e-179

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 500.77  E-value: 7.68e-179
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660   1 IINHSFIDLPAPSNISSWWNFGSLLGICLMVQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFI 80
Cdd:MTH00022  12 IVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFL 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660  81 CLFLHVGRGIYYGSYTFLETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAVPYIGTTLVEWIWGGFSVDK 160
Cdd:MTH00022  92 CLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSN 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660 161 ATLTRFFAFHFILPFIILALVIVHLLFLHETGSNNPTGLNSDSDKIPFHPYYTIKDILGLFIMILLLMTLVLFFPDLLGD 240
Cdd:MTH00022 172 ATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGD 251

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660 241 PDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALIMSILVLALLPFLHTSKQRSLTFRPITQILKWILVANL 320
Cdd:MTH00022 252 PENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDF 331

                        330       340       350
                 ....*....|....*....|....*....|..
gi 749403660 321 LILTWIGGQPVEHPFIIIGQLASISYFSIILI 352
Cdd:MTH00022 332 ILLTWIGSQVVEEPFILIGQLLSFFYFFYFLV 363
CYTB MTH00053
cytochrome b; Provisional
 1-352 6.29e-178

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 498.46  E-value: 6.29e-178
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660   1 IINHSFIDLPAPSNISSWWNFGSLLGICLMVQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFI 80
Cdd:MTH00053  14 LVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFL 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660  81 CLFLHVGRGIYYGSYTFLETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAVPYIGTTLVEWIWGGFSVDK 160
Cdd:MTH00053  94 CVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSN 173

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660 161 ATLTRFFAFHFILPFIILALVIVHLLFLHETGSNNPTGLNSDSDKIPFHPYYTIKDILGLFIMILLLMTLVLFFPDLLGD 240
Cdd:MTH00053 174 ATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGD 253

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660 241 PDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALIMSILVLALLPFLHTSKQRSLTFRPITQILKWILVANL 320
Cdd:MTH00053 254 AENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDF 333

                        330       340       350
                 ....*....|....*....|....*....|..
gi 749403660 321 LILTWIGGQPVEHPFIIIGQLASISYFSIILI 352
Cdd:MTH00053 334 FLLTWIGGQPVEEPYILIGQIASIFYFAYFLI 365
CYTB MTH00224
cytochrome b; Provisional
 1-352 2.12e-177

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 497.14  E-value: 2.12e-177
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660   1 IINHSFIDLPAPSNISSWWNFGSLLGICLMVQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFI 80
Cdd:MTH00224  14 ILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFL 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660  81 CLFLHVGRGIYYGSYTFLETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAVPYIGTTLVEWIWGGFSVDK 160
Cdd:MTH00224  94 FIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDN 173

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660 161 ATLTRFFAFHFILPFIILALVIVHLLFLHETGSNNPTGLNSDSDKIPFHPYYTIKDILGLFIMILLLMTLVLFFPDLLGD 240
Cdd:MTH00224 174 ATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTD 253

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660 241 PDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALIMSILVLALLPFLHTSKQRSLTFRPITQILKWILVANL 320
Cdd:MTH00224 254 PENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVTSW 333

                        330       340       350
                 ....*....|....*....|....*....|..
gi 749403660 321 LILTWIGGQPVEHPFIIIGQLASISYFSIILI 352
Cdd:MTH00224 334 AILTWIGGRPVEDPFEGIGQVFTILYFSYFII 365
CYTB MTH00033
cytochrome b; Provisional
 7-352 2.04e-136

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 393.15  E-value: 2.04e-136
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660   7 IDLPAPSNISSWWNFGSLLGICLMVQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHV 86
Cdd:MTH00033  16 IDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHI 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660  87 GRGIYYGSYTFLETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAVPYIGTTLVEWIWGGFSVDKATLTRF 166
Cdd:MTH00033  96 GRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRF 175

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660 167 FAFHFILPFIILALVIVHLLFLHETGSNNPTGLNSDSDKIPFHPYYTIKDILGLFIMILLLMTLVL--FFPDLLGDPDNY 244
Cdd:MTH00033 176 FSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIepRIETLLQDPENF 255

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660 245 TPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALIMSILVLALLPFLHTSKQRSLTFRPITQILKWILVANLLILT 324
Cdd:MTH00033 256 IQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILT 335

                        330       340
                 ....*....|....*....|....*....
gi 749403660 325 WIGGQPV-EHPFIIIGQLASISYFSIILI 352
Cdd:MTH00033 336 WIGSAPAgADPYVLIGRIATIFYFGYFLV 364
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
4-352 2.69e-133

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 385.68  E-value: 2.69e-133
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660   4 HSFIDLPAPSNISSWWNFGSLLGICLMVQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLF 83
Cdd:COG1290   25 REHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVY 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660  84 LHVGRGIYYGSYTF---LeTWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAVPYIGTTLVEWIWGGFSVDK 160
Cdd:COG1290  105 LHMFRGFFYGAYKKpreL-NWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGD 183

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660 161 ATLTRFFAFH-FILPFIILALVIVHLLFLHETGSNNPTG----LNSDSDKIPFHPYYTIKDILGLFIMILLLMTLVLFFP 235
Cdd:COG1290  184 ATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFP 263

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660 236 DllGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALIMSILVLALLPFLHTSKQRSLTFRPITQILK 313
Cdd:COG1290  264 I--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALG 341

                        330       340       350
                 ....*....|....*....|....*....|....*....
gi 749403660 314 WILVANLLILTWIGGQPVehPFIIIGQLASISYFSIILI 352
Cdd:COG1290  342 VAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLI 378
CYTB MTH00086
cytochrome b; Provisional
 7-352 1.96e-124

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 361.56  E-value: 1.96e-124
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660   7 IDLPAPSNISSWWNFGSLLGICLMVQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHV 86
Cdd:MTH00086   8 VTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHI 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660  87 GRGIYYGSYTFLETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAVPYIGTTLVEWIWGGFSVDKATLTRF 166
Cdd:MTH00086  88 FKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFF 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660 167 FAFHFILPFIILALVIVHLLFLHETGSNNPTGLNSDSDKIPFHPYYTIKDILGLfIMILLLMTLVLFFPDLLGDPDNYTP 246
Cdd:MTH00086 168 FVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNI-IFWLVFIIFSLFYPFNLGDPEMFIE 246

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660 247 ANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALIMSILVLALLPFLHTSKQrslTFRPITQILKWILVANLLILTWI 326
Cdd:MTH00086 247 ADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNYTS---CLNKLNKFLVFSFIVVNVILSWL 323

                        330       340
                 ....*....|....*....|....*.
gi 749403660 327 GGQPVEHPFIIIGQLASISYFSIILI 352
Cdd:MTH00086 324 GQCLVEYPFLFLSQIFSFIYFFLILL 349
CYTB MTH00046
cytochrome b; Validated
 1-352 2.01e-95

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 287.65  E-value: 2.01e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660   1 IINHSFIDLPAPSNISSWWNFGSLLGICLMVQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFI 80
Cdd:MTH00046   4 LIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFI 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660  81 CLFLHVGRGIYYGSYTFLETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAVPYIGTTLVEWIWGGFSVDK 160
Cdd:MTH00046  84 LLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTG 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660 161 ATLTRFFAFHFILPFIILALVIVHLLFLHETGSNNPTGL-NSDSDKIPFHPYYTIKDILGLFIMILLLMTLVLFFPDLLG 239
Cdd:MTH00046 164 VTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSsNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVL 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660 240 DPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGvLALIMSILVLALLPflhtSKQRSLTFRPITQILKWILVAN 319
Cdd:MTH00046 244 DIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG-LVLVLSFLFFLWVP----TFNGSSVYSVWRQVNFWLIVSL 318

                        330       340       350
                 ....*....|....*....|....*....|...
gi 749403660 320 LLILTWIGGQPVEHPFIIIGQLASISYFSIILI 352
Cdd:MTH00046 319 FFSLSYLGGCHPEYPYLLISQLFSVLMVLLLFI 351
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-194 3.15e-93

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 276.56  E-value: 3.15e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660   1 IINHSFIDLPAPSNISSWWNFGSLLGICLMVQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFI 80
Cdd:cd00284    5 EVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFL 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660  81 CLFLHVGRGIYYGSY--TFLETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAVPYIGTTLVEWIWGGFSV 158
Cdd:cd00284   85 MLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSV 164

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 749403660 159 DKATLTRFFAFHFILPFIILALVIVHLLFLHETGSN 194
Cdd:cd00284  165 DNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
6-192 7.25e-85

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 255.00  E-value: 7.25e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660    6 FIDLPAPSNISSWWNFGSLLGICLMVQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLH 85
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660   86 VGRGIYYG--SYTFLETWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAVPYIGTTLVEWIWGGFSVDKATL 163
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 749403660  164 TRFFAFHFILPFIILALVIVHLLFLHETG 192
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 195-342 8.94e-58

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 184.00  E-value: 8.94e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660 195 NPTGLNSDSDKIPFHPYYTIKDILGLFIMILLLMTLVLFFPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPN 274
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 749403660 275 KLGGVLALIMSILVLALLPFLHTSKQRSlTFRPITQILKWILVANLLILTWIGGQPVEHPFIIIGQLA 342
Cdd:cd00290   81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
246-346 1.76e-47

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 155.71  E-value: 1.76e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660  246 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALIMSILVLALLPFLHTSKQRSLTFRPITQILKWILVANLLILTW 325
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 749403660  326 IGGQPVEHPFIIIGQLASISY 346
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
76-241 5.06e-47

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 157.02  E-value: 5.06e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660   76 SMFFICLFLHVGRGIYYGSYTFLE--TWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAVPYIGTTLVEWIW 153
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660  154 GGFSVDKATLTRFFAFHF-ILPFIILALVIVHLLFLHETGSNNPTGLNSDSDKIPFHPYYTIKDILGLFIMILLLMTLVL 232
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 749403660  233 FFPDLLGDP 241
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 21-196 6.53e-40

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 140.62  E-value: 6.53e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660  21 FGSLLGICLMVQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGIYYGSYTFLE- 99
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660 100 -TWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAVPYIGTTLVEWIWGGFSVDKATLTRFFAFH-FILPFII 177
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                        170
                 ....*....|....*....
gi 749403660 178 LALVIVHLLFLHETGSNNP 196
Cdd:PRK03735 204 AVLMLAHFLMIRKQGISGP 222
petB CHL00070
cytochrome b6
 12-196 6.42e-34

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 124.45  E-value: 6.42e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660  12 PSNISSWWNFGSLLGICLMVQIITGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGIY 91
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660  92 YGSYTFLE--TWNIGVILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAVPYIGTTLVEWIWGGFSVDKATLTRFFAF 169
Cdd:CHL00070 107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                        170       180
                 ....*....|....*....|....*...
gi 749403660 170 H-FILPFIILALVIVHLLFLHETGSNNP 196
Cdd:CHL00070 187 HtFVLPLLTAVFMLMHFLMIRKQGISGP 214
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 216-295 5.53e-11

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 60.19  E-value: 5.53e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660 216 DILGLF---IM--ILLLMTLVLFFPDLLGDPdnytpANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALIMSILVLA 290
Cdd:COG5679   36 DLLYIFpvvILgtIALCIGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLM 110


                 ....*
gi 749403660 291 LLPFL 295
Cdd:COG5679  111 LVPFI 115
petD CHL00058
cytochrome b6/f complex subunit IV
 217-295 1.10e-09

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 56.55  E-value: 1.10e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 749403660 217 ILGLFIMILLLMTLVlffPDLLGDPdnytpANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALIMSILVLALLPFL 295
Cdd:CHL00058  44 ILGTIACNVGLAVLE---PSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFL 114
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 216-306 3.25e-09

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 55.19  E-value: 3.25e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 749403660  216 DILGLFIMILL-----LMTLVLFFPDLLGDPdnytpANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALIMSILVLA 290
Cdd:TIGR01156  35 DLLYIFPVVILgtiacVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLL 109

                          90
                  ....*....|....*.
gi 749403660  291 LLPFLHTSKQRSLTFR 306
Cdd:TIGR01156 110 TVPFIENVNKFQNPFR 125
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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