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Conserved domains on  [gi|778082009|gb|AJY58514|]
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40S ribosomal protein S10 (mitochondrion) [Peronospora sp. S27]

Protein Classification

uS10/mL48 family ribosomal protein( domain architecture ID 10448432)

uS10/mL48 family ribosomal protein similar to fungal mitochondrial 37S ribosomal protein S10, human mitochondrial 39S ribosomal protein L48 and 28S ribosomal protein S10, and archaeal 30S ribosomal protein S10

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ribosomal_S10 pfam00338
Ribosomal protein S10p/S20e; This family includes small ribosomal subunit S10 from prokaryotes ...
 5-76 3.58e-08

Ribosomal protein S10p/S20e; This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.


:

Pssm-ID: 459769  Cd Length: 98  Bit Score: 47.10  E-value: 3.58e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 778082009    5 RITFKSFqKINQLKQKLIKLKTFNKLKNIKIKGIFQIKNKNKIFTLLKSPHVNKKSREHFIYKNYLPKIDIK 76
Cdd:pfam00338   1 RIKLKSY-DHALLDSYAKFIVRAAKRLGIKVSGPIPLPTKRLRVTVLKSPHVHKKSREQFEMRTHKRLIDIK 71
 
Name Accession Description Interval E-value
Ribosomal_S10 pfam00338
Ribosomal protein S10p/S20e; This family includes small ribosomal subunit S10 from prokaryotes ...
 5-76 3.58e-08

Ribosomal protein S10p/S20e; This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.


Pssm-ID: 459769  Cd Length: 98  Bit Score: 47.10  E-value: 3.58e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 778082009    5 RITFKSFqKINQLKQKLIKLKTFNKLKNIKIKGIFQIKNKNKIFTLLKSPHVNKKSREHFIYKNYLPKIDIK 76
Cdd:pfam00338   1 RIKLKSY-DHALLDSYAKFIVRAAKRLGIKVSGPIPLPTKRLRVTVLKSPHVHKKSREQFEMRTHKRLIDIK 71
rpsJ_bact TIGR01049
ribosomal protein S10, bacterial/organelle; This model describes bacterial 30S ribosomal ...
 4-80 4.26e-08

ribosomal protein S10, bacterial/organelle; This model describes bacterial 30S ribosomal protein S10. In species that have a transcription antitermination complex, or N utilization substance, with NusA, NusB, NusG, and NusE, this ribosomal protein is responsible for NusE activity. Included in the family are one member each from Saccharomyces cerevisiae and Schizosaccharomyces pombe. These proteins lack an N-terminal mitochondrial transit peptide but contain additional sequence C-terminal to the ribosomal S10 protein region. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130121  Cd Length: 99  Bit Score: 46.86  E-value: 4.26e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 778082009    4 LRITFKSF--QKINQLKQKLIKlkTFNKLkNIKIKGIFQIKNKNKIFTLLKSPHVNKKSREHFIYKNYLPKIDIKFKNI 80
Cdd:TIGR01049   3 IRIKLKSYdhRLLDQSTKKIVE--TAKRT-GAQVKGPIPLPTKKERYTVLRSPHVNKDSREQFEIRTHKRLIDIIDPNP 78
RpsJ COG0051
Ribosomal protein S10 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S10 ...
 2-76 8.04e-08

Ribosomal protein S10 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S10 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439821  Cd Length: 103  Bit Score: 46.28  E-value: 8.04e-08
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 778082009   2 YILRITFKSFQkINQLKQKLIKLKTFNKLKNIKIKGIFQIKNKNKIFTLLKSPHVNKKSREHFIYKNYLPKIDIK 76
Cdd:COG0051    4 QKIRIRLKSYD-HRLLDQSVKKIVETAKRTGAKVKGPIPLPTKILRVTVLRSPHVDKDSREQFEMRTHKRLIDIH 77
rpsJ PRK00596
30S ribosomal protein S10; Reviewed
 18-64 2.60e-06

30S ribosomal protein S10; Reviewed


Pssm-ID: 179076  Cd Length: 102  Bit Score: 42.46  E-value: 2.60e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 778082009  18 KQKL-IKLKTFN---------------KLKNIKIKGIFQIKNKNKIFTLLKSPHVNKKSREHF 64
Cdd:PRK00596   3 KQKIrIRLKAFDhrlldqsakkivetaKRTGAQVRGPIPLPTKKERFTVLRSPHVNKDSREQF 65
 
Name Accession Description Interval E-value
Ribosomal_S10 pfam00338
Ribosomal protein S10p/S20e; This family includes small ribosomal subunit S10 from prokaryotes ...
 5-76 3.58e-08

Ribosomal protein S10p/S20e; This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.


Pssm-ID: 459769  Cd Length: 98  Bit Score: 47.10  E-value: 3.58e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 778082009    5 RITFKSFqKINQLKQKLIKLKTFNKLKNIKIKGIFQIKNKNKIFTLLKSPHVNKKSREHFIYKNYLPKIDIK 76
Cdd:pfam00338   1 RIKLKSY-DHALLDSYAKFIVRAAKRLGIKVSGPIPLPTKRLRVTVLKSPHVHKKSREQFEMRTHKRLIDIK 71
rpsJ_bact TIGR01049
ribosomal protein S10, bacterial/organelle; This model describes bacterial 30S ribosomal ...
 4-80 4.26e-08

ribosomal protein S10, bacterial/organelle; This model describes bacterial 30S ribosomal protein S10. In species that have a transcription antitermination complex, or N utilization substance, with NusA, NusB, NusG, and NusE, this ribosomal protein is responsible for NusE activity. Included in the family are one member each from Saccharomyces cerevisiae and Schizosaccharomyces pombe. These proteins lack an N-terminal mitochondrial transit peptide but contain additional sequence C-terminal to the ribosomal S10 protein region. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130121  Cd Length: 99  Bit Score: 46.86  E-value: 4.26e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 778082009    4 LRITFKSF--QKINQLKQKLIKlkTFNKLkNIKIKGIFQIKNKNKIFTLLKSPHVNKKSREHFIYKNYLPKIDIKFKNI 80
Cdd:TIGR01049   3 IRIKLKSYdhRLLDQSTKKIVE--TAKRT-GAQVKGPIPLPTKKERYTVLRSPHVNKDSREQFEIRTHKRLIDIIDPNP 78
RpsJ COG0051
Ribosomal protein S10 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S10 ...
 2-76 8.04e-08

Ribosomal protein S10 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S10 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439821  Cd Length: 103  Bit Score: 46.28  E-value: 8.04e-08
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 778082009   2 YILRITFKSFQkINQLKQKLIKLKTFNKLKNIKIKGIFQIKNKNKIFTLLKSPHVNKKSREHFIYKNYLPKIDIK 76
Cdd:COG0051    4 QKIRIRLKSYD-HRLLDQSVKKIVETAKRTGAKVKGPIPLPTKILRVTVLRSPHVDKDSREQFEMRTHKRLIDIH 77
rpsJ PRK00596
30S ribosomal protein S10; Reviewed
 18-64 2.60e-06

30S ribosomal protein S10; Reviewed


Pssm-ID: 179076  Cd Length: 102  Bit Score: 42.46  E-value: 2.60e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 778082009  18 KQKL-IKLKTFN---------------KLKNIKIKGIFQIKNKNKIFTLLKSPHVNKKSREHF 64
Cdd:PRK00596   3 KQKIrIRLKAFDhrlldqsakkivetaKRTGAQVRGPIPLPTKKERFTVLRSPHVNKDSREQF 65
rps10 CHL00135
ribosomal protein S10; Validated
 4-76 5.51e-06

ribosomal protein S10; Validated


Pssm-ID: 177057  Cd Length: 101  Bit Score: 41.51  E-value: 5.51e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 778082009   4 LRITFKSFQkINQLKQKLIKLKTFNKLKNIKIKGIFQIKNKNKIFTLLKSPHVNKKSREHFIYKNYLPKIDIK 76
Cdd:CHL00135   9 IRIKLKSFN-HELLNSSCKKIIDTASRTNATAVGPIPLPTKRRIYCVLRSPHVDKDSREHFEIRTHKRIIDIY 80
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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