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Conserved domains on  [gi|805407657|gb|AKB56820|]
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hypothetical protein MSBR2_0304 [Methanosarcina barkeri 227]

Protein Classification

MAST_ArtA_sort family protein( domain architecture ID 10024562)

MAST_ArtA_sort family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
MAST_ArtA_sort TIGR04204
MAST domain; This model describes a domain (or in most cases the full length) of archaeal ...
 29-209 2.30e-103

MAST domain; This model describes a domain (or in most cases the full length) of archaeal surface proteins that are putative targets for C-terminal processing by archaeosortase A (TIGR04125). Most members of this family belong to proteins encoded by tandem genes in the genus Methanosarcina. The putative processing signal, PGF-CTERM (TIGR04126), included within the domain definition, takes a variant form, with consensus motif PAF instead of PGF. We suggest the name MAST domain: Methanosarcina Archaeosortase-Sorted Tandem gene family domain.


:

Pssm-ID: 275051  Cd Length: 182  Bit Score: 295.92  E-value: 2.30e-103
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805407657   29 EMKVYYNEKLLPGSETAKPTLKIGEPFKVSINLTVYQKSEVSVMLSEIGDGDFLILEGFTNKMNRYG-SKVMEKNSSETF 107
Cdd:TIGR04204   1 SIDVYYNDKLLPGKEVAKPTLKIGEPFKVKINITVYQKSRVSVEVSSIGPGRFEIINGDTSKMNLYSpDRILDRNSGKVY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805407657  108 EWTVKPTNNWAGGSLPVNLVYQINDFETGDILVNSGFTIAYPYISNEYYQGETPTSEQTETENQPTSKKPASENSPSPAS 187
Cdd:TIGR04204  81 EWTVKPTELWAGGSLPLNFVYQINETGTDEPLVPGEFTIAYPIISNEHYEGETPTSEQPETENQPTSKKPASENSSSPAS 160

                         170       180
                  ....*....|....*....|..
gi 805407657  188 APAFSLITAISALVLVFLRLSR 209
Cdd:TIGR04204 161 APAFSLVTAISALALVFFRLSR 182
 
Name Accession Description Interval E-value
MAST_ArtA_sort TIGR04204
MAST domain; This model describes a domain (or in most cases the full length) of archaeal ...
 29-209 2.30e-103

MAST domain; This model describes a domain (or in most cases the full length) of archaeal surface proteins that are putative targets for C-terminal processing by archaeosortase A (TIGR04125). Most members of this family belong to proteins encoded by tandem genes in the genus Methanosarcina. The putative processing signal, PGF-CTERM (TIGR04126), included within the domain definition, takes a variant form, with consensus motif PAF instead of PGF. We suggest the name MAST domain: Methanosarcina Archaeosortase-Sorted Tandem gene family domain.


Pssm-ID: 275051  Cd Length: 182  Bit Score: 295.92  E-value: 2.30e-103
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805407657   29 EMKVYYNEKLLPGSETAKPTLKIGEPFKVSINLTVYQKSEVSVMLSEIGDGDFLILEGFTNKMNRYG-SKVMEKNSSETF 107
Cdd:TIGR04204   1 SIDVYYNDKLLPGKEVAKPTLKIGEPFKVKINITVYQKSRVSVEVSSIGPGRFEIINGDTSKMNLYSpDRILDRNSGKVY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805407657  108 EWTVKPTNNWAGGSLPVNLVYQINDFETGDILVNSGFTIAYPYISNEYYQGETPTSEQTETENQPTSKKPASENSPSPAS 187
Cdd:TIGR04204  81 EWTVKPTELWAGGSLPLNFVYQINETGTDEPLVPGEFTIAYPIISNEHYEGETPTSEQPETENQPTSKKPASENSSSPAS 160

                         170       180
                  ....*....|....*....|..
gi 805407657  188 APAFSLITAISALVLVFLRLSR 209
Cdd:TIGR04204 161 APAFSLVTAISALALVFFRLSR 182
 
Name Accession Description Interval E-value
MAST_ArtA_sort TIGR04204
MAST domain; This model describes a domain (or in most cases the full length) of archaeal ...
 29-209 2.30e-103

MAST domain; This model describes a domain (or in most cases the full length) of archaeal surface proteins that are putative targets for C-terminal processing by archaeosortase A (TIGR04125). Most members of this family belong to proteins encoded by tandem genes in the genus Methanosarcina. The putative processing signal, PGF-CTERM (TIGR04126), included within the domain definition, takes a variant form, with consensus motif PAF instead of PGF. We suggest the name MAST domain: Methanosarcina Archaeosortase-Sorted Tandem gene family domain.


Pssm-ID: 275051  Cd Length: 182  Bit Score: 295.92  E-value: 2.30e-103
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805407657   29 EMKVYYNEKLLPGSETAKPTLKIGEPFKVSINLTVYQKSEVSVMLSEIGDGDFLILEGFTNKMNRYG-SKVMEKNSSETF 107
Cdd:TIGR04204   1 SIDVYYNDKLLPGKEVAKPTLKIGEPFKVKINITVYQKSRVSVEVSSIGPGRFEIINGDTSKMNLYSpDRILDRNSGKVY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805407657  108 EWTVKPTNNWAGGSLPVNLVYQINDFETGDILVNSGFTIAYPYISNEYYQGETPTSEQTETENQPTSKKPASENSPSPAS 187
Cdd:TIGR04204  81 EWTVKPTELWAGGSLPLNFVYQINETGTDEPLVPGEFTIAYPIISNEHYEGETPTSEQPETENQPTSKKPASENSSSPAS 160

                         170       180
                  ....*....|....*....|..
gi 805407657  188 APAFSLITAISALVLVFLRLSR 209
Cdd:TIGR04204 161 APAFSLVTAISALALVFFRLSR 182
sarcinarray TIGR04209
sarcinarray family protein; Members of this protein family are exclusive to archaea, probably ...
 13-157 4.91e-77

sarcinarray family protein; Members of this protein family are exclusive to archaea, probably all of which have S-layer surface protein arrays. All member proteins have an N-terminal signal sequence. The majority of known members belong to codirectional tandem arrays in the genus Methanosarcina (nine in M. barkeri str. Fusaro). Nearly all members have an additional 50 residues, (trimmed from the seed alignment for this model), consisting of low-complexity sequence rich in E,N,Q,T,S, and P, followed by a variant (PAF) form of the PGF-CTERM putative archaeal surface glycoprotein sorting signal. The coined name, sarcinarray family protein, evokes the predicted archaeal surface layer localization, the taxonomic bias of known members, and the tandem organization of most members.


Pssm-ID: 275055  Cd Length: 144  Bit Score: 227.65  E-value: 4.91e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 805407657   13 FLILFPSISLASSPYGEMKVYYNEKLLPGSETAKPTLKIGEPFKVSINLTVYQKSEVSVMLSEIGDGDFLILEGFtNKMN 92
Cdd:TIGR04209   1 FLLAFVSLVSASSDYGSIDVYYNGKLLPGAEVAKPVLKIGEPFTVKINMTVYQKSTVSVKLSELGGGSFEIISGP-SPMN 79

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 805407657   93 RYGSKVMEKNSSETFEWTVKPTNNWAGGSLPVNLVYQINDFETGDILVNSGFTIAYPYISNEYYQ 157
Cdd:TIGR04209  80 IYSSRILEKNETHTFEWTVAPTDNWAGGSLPVDFHYQINDFGTPEPLVNGSFTVAYPYISNEHYE 144
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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