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Conserved domains on  [gi|859811363|gb|AKO71688|]
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photosystem I P700 chlorophyll a apoprotein A1, partial (plastid) [Mallomonas lelymene]

Protein Classification

photosystem I psaA/psaB family protein( domain architecture ID 954)

photosystem I psaA/psaB family protein may bind P700, the primary electron donor of PSI, which is a plastocyanin-ferredoxin oxidoreductase essential for light-driven electron transport, as well as the electron acceptors A0, A1 and FX

EC:  1.97.1.12
Gene Ontology:  GO:0016020|GO:0009522|GO:0015979|GO:0016168
PubMed:  15573135
SCOP:  3000850
TCDB:  5.B.4

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
psaB super family cl08224
photosystem I P700 chlorophyll a apoprotein A2
 1-526 0e+00

photosystem I P700 chlorophyll a apoprotein A2


The actual alignment was detected with superfamily member CHL00056:

Pssm-ID: 471792  Cd Length: 750  Bit Score: 1020.44  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 859811363   1 NLHADAHDFDIQTKSLEEVSRKIFSAHFGQLSIIFLWLSGMHFHGAYFSNYTAWLINPLQIKPSAQSVYPIVGQEILNAD 80
Cdd:CHL00056  48 NLHADAHDFDSHTSDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSDPTHIKPSAQVVWPIVGQEILNGD 127

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 859811363  81 VGGNFQGIQITSGFFQIWRAEGITTQQQLYCTAIGALVMSALMLFAGWFHYHKAAPKLNWFQNAESMLNHHLSGLLGLGS 160
Cdd:CHL00056 128 VGGGFRGIQITSGFFQIWRASGITSELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGS 207

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 859811363 161 LAWAGHEIHIGNPINKLLDAGMDPKDLPNPHELLINREFIGSLYPSFKEGLLPFFSLDWSKYSDILTFKGGLNPTTASLW 240
Cdd:CHL00056 208 LSWAGHQIHVSLPINQLLDAGVDPKEIPLPHEFILNRDLLAQLYPSFAKGLTPFFTLNWSEYSDFLTFRGGLNPVTGGLW 287

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 859811363 241 LTDAAHHHLAIGVLFIIAGHMYRTNFGIGHSMKEILEAHKGPFTGSGHKGLYEVLTTSWHAQLAINLALLGSLTIIIAHH 320
Cdd:CHL00056 288 LTDIAHHHLAIAVLFLIAGHMYRTNWGIGHSLKEILEAHKGPFTGEGHKGLYEILTTSWHAQLALNLAMLGSLTIIVAHH 367

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 859811363 321 MYAMPPYPFIAIDYPTQLSIFTHHMWIGAFCIVGGAAHGSIFMVRDYDATLNYNNLLDRVIRHRDAIISHLNWVCIFLGF 400
Cdd:CHL00056 368 MYSMPPYPYLATDYGTQLSLFTHHMWIGGFLIVGAAAHAAIFMVRDYDPTTRYNNLLDRVLRHRDAIISHLNWVCIFLGF 447

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 859811363 401 HSFGLYIHNDTMQALGRPQDMFSDKAISLQPIFAQWIQSLHTAAPGTTSPNSLATASYIFGGDPVV-LGSKIALMPMKLG 479
Cdd:CHL00056 448 HSFGLYIHNDTMSALGRPQDMFSDTAIQLQPIFAQWIQNTHALAPGATAPGATASTSLTWGGGDLVaVGGKVALLPIPLG 527

                        490       500       510       520
                 ....*....|....*....|....*....|....*....|....*..
gi 859811363 480 TADFLVHHIHAFTIHVTALILFKGLLYARNSRLIPDKSNLGFRFPCD 526
Cdd:CHL00056 528 TADFLVHHIHAFTIHVTVLILLKGVLFARSSRLIPDKANLGFRFPCD 574
 
Name Accession Description Interval E-value
psaA CHL00056
photosystem I P700 chlorophyll a apoprotein A1
 1-526 0e+00

photosystem I P700 chlorophyll a apoprotein A1


Pssm-ID: 176996  Cd Length: 750  Bit Score: 1020.44  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 859811363   1 NLHADAHDFDIQTKSLEEVSRKIFSAHFGQLSIIFLWLSGMHFHGAYFSNYTAWLINPLQIKPSAQSVYPIVGQEILNAD 80
Cdd:CHL00056  48 NLHADAHDFDSHTSDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSDPTHIKPSAQVVWPIVGQEILNGD 127

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 859811363  81 VGGNFQGIQITSGFFQIWRAEGITTQQQLYCTAIGALVMSALMLFAGWFHYHKAAPKLNWFQNAESMLNHHLSGLLGLGS 160
Cdd:CHL00056 128 VGGGFRGIQITSGFFQIWRASGITSELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGS 207

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 859811363 161 LAWAGHEIHIGNPINKLLDAGMDPKDLPNPHELLINREFIGSLYPSFKEGLLPFFSLDWSKYSDILTFKGGLNPTTASLW 240
Cdd:CHL00056 208 LSWAGHQIHVSLPINQLLDAGVDPKEIPLPHEFILNRDLLAQLYPSFAKGLTPFFTLNWSEYSDFLTFRGGLNPVTGGLW 287

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 859811363 241 LTDAAHHHLAIGVLFIIAGHMYRTNFGIGHSMKEILEAHKGPFTGSGHKGLYEVLTTSWHAQLAINLALLGSLTIIIAHH 320
Cdd:CHL00056 288 LTDIAHHHLAIAVLFLIAGHMYRTNWGIGHSLKEILEAHKGPFTGEGHKGLYEILTTSWHAQLALNLAMLGSLTIIVAHH 367

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 859811363 321 MYAMPPYPFIAIDYPTQLSIFTHHMWIGAFCIVGGAAHGSIFMVRDYDATLNYNNLLDRVIRHRDAIISHLNWVCIFLGF 400
Cdd:CHL00056 368 MYSMPPYPYLATDYGTQLSLFTHHMWIGGFLIVGAAAHAAIFMVRDYDPTTRYNNLLDRVLRHRDAIISHLNWVCIFLGF 447

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 859811363 401 HSFGLYIHNDTMQALGRPQDMFSDKAISLQPIFAQWIQSLHTAAPGTTSPNSLATASYIFGGDPVV-LGSKIALMPMKLG 479
Cdd:CHL00056 448 HSFGLYIHNDTMSALGRPQDMFSDTAIQLQPIFAQWIQNTHALAPGATAPGATASTSLTWGGGDLVaVGGKVALLPIPLG 527

                        490       500       510       520
                 ....*....|....*....|....*....|....*....|....*..
gi 859811363 480 TADFLVHHIHAFTIHVTALILFKGLLYARNSRLIPDKSNLGFRFPCD 526
Cdd:CHL00056 528 TADFLVHHIHAFTIHVTVLILLKGVLFARSSRLIPDKANLGFRFPCD 574
psaA TIGR01335
photosystem I core protein PsaA; The core proteins of photosystem I are PsaA and PsaB, ...
 1-526 0e+00

photosystem I core protein PsaA; The core proteins of photosystem I are PsaA and PsaB, homologous integral membrane proteins that form a heterodimer. The heterodimer binds the electron-donating chlorophyll dimer P700, as well as chlorophyll, phylloquinone, and 4FE-4S electron acceptors. This model describes PsaA only. [Energy metabolism, Photosynthesis]


Pssm-ID: 130402 [Multi-domain]  Cd Length: 752  Bit Score: 937.07  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 859811363    1 NLHADAHDFDIQTKSLEEVSRKIFSAHFGQLSIIFLWLSGMHFHGAYFSNYTAWLINPLQIKPSAQSVYPIVGQEILNAD 80
Cdd:TIGR01335  51 NLHADAHDFDSHTSDLEDISRKIFSAHFGQLSVIFIWLSGMYFHGARFSNYEAWLSDPTHIKPSAQVVWPIVGQEILNGD 130

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 859811363   81 VGGNFQGIQITSGFFQIWRAEGITTQQQLYCTAIGALVMSALMLFAGWFHYHKAAPKLNWFQNAESMLNHHLSGLLGLGS 160
Cdd:TIGR01335 131 VGGGFHGIQITSGFFQLWRASGITNELQLYVTAIGGLVMAGLMLFAGWFHYHKAAPKLEWFQNVESMLNHHLAGLLGLGS 210

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 859811363  161 LAWAGHEIHIGNPINKLLDAGMDPKDLPNPHELLINREFIGSLYPSFKEGLLPFFSLDWSKYSDILTFKGGLNPTTASLW 240
Cdd:TIGR01335 211 LSWAGHQIHVSLPINKLLDAGVDPKDIPLPHEFILNRELMAQLYPSFASGLTPFFTLNWGAYSDFLTFRGGLNPVTGGLW 290

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 859811363  241 LTDAAHHHLAIGVLFIIAGHMYRTNFGIGHSMKEILEAHKGPFTGSGHKGLYEVLTTSWHAQLAINLALLGSLTIIIAHH 320
Cdd:TIGR01335 291 LSDIAHHHLAIAVLFIIAGHMYRTNWGIGHSIKEILEAHKGPFTGSGHKGLYEALTTSWHAQLAINLAMLGSLSIIVAHH 370

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 859811363  321 MYAMPPYPFIAIDYPTQLSIFTHHMWIGAFCIVGGAAHGSIFMVRDYDATLNYNNLLDRVIRHRDAIISHLNWVCIFLGF 400
Cdd:TIGR01335 371 MYAMPPYPYLATDYPTQLSLFTHHMWIGGFLIVGAAAHGAIFMVRDYDPSQNYNNVLDRVIRHRDAIISHLNWVCIFLGF 450

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 859811363  401 HSFGLYIHNDTMQALGRPQDMFSDKAISLQPIFAQWIQSLHTAAPGTTSPNSLATASYIFGGDPVVLGSKIALMPMKLGT 480
Cdd:TIGR01335 451 HSFGLYIHNDTMRALGRPQDMFSDTAIQLQPVFAQWIQNLHTLAPGNTAPNALATTSYAFGGEVVAVGGKVAMMPIKLGT 530

                         490       500       510       520
                  ....*....|....*....|....*....|....*....|....*.
gi 859811363  481 ADFLVHHIHAFTIHVTALILFKGLLYARNSRLIPDKSNLGFRFPCD 526
Cdd:TIGR01335 531 ADFMVHHIHAFTIHVTVLILLKGVLFARNSRLIPDKANLGFRFPCD 576
PsaA COG5701
Photosystem I reaction center subunit A1, PsaA [Energy production and conversion]; Photosystem ...
 1-526 0e+00

Photosystem I reaction center subunit A1, PsaA [Energy production and conversion]; Photosystem I reaction center subunit A1, PsaA is part of the Pathway/BioSystem: Photosystem I


Pssm-ID: 444411  Cd Length: 755  Bit Score: 903.44  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 859811363   1 NLHADAHDFDIQTKSLEEVSRKIFSAHFGQLSIIFLWLSGMHFHGAYFSNYTAWLINPLQIKPSAQSVYPIVGQEILNAD 80
Cdd:COG5701   50 NLHALAHDFDTHTSDLEEISRKIFSAHFGHLAVVFIWLSGMFFHGARFSNYTAWLADPTGVKPSAQVVWPIVGQEILNAD 129

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 859811363  81 VGGNFQGIQITSGFFQIWRAEGITTQQQLYCTAIGALVMSALMLFAGWFHYHKAAPKLNWFQNAESMLNHHLSGLLGLGS 160
Cdd:COG5701  130 VGGGFHGIQITSGLFQMWRAWGITNEFQLYCTAIGALVMAALMLFAGWFHYHKRAPKLEWFQNVESMLNHHLAGLLGLGS 209

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 859811363 161 LAWAGHEIHIGNPINKLLDAGMDPKDLPNPHELLiNREFIGSLYPSFKEGLLPFFSLDWSKYSDILTFKGGLNPTTASLW 240
Cdd:COG5701  210 LAWTGHLIHVSLPVNALLDAGVAAADIPLPHEFL-NPSLMAQLYPGFASGVGPFFTLNWGAFSDFLTFKGGLNPVTGGLW 288

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 859811363 241 LTDAAHHHLAIGVLFIIAGHMYRTNFGIGHSMKEILEAHKGP---FTG-SGHKGLYEVLTTSWHAQLAINLALLGSLTII 316
Cdd:COG5701  289 LTDIAHHHLAIAVLFIIAGHMYRTNWGIGHSMKEILEAHKGPpllFTGpEGHKGLYEVLTTSWHAQLAINLAMMGSLSII 368

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 859811363 317 IAHHMYAMPPYPFIAIDYPTQLSIFTHHMWIGAFCIVGGAAHGSIFMVRDYDATLNYNNLLDRVIRHRDAIISHLNWVCI 396
Cdd:COG5701  369 VAHHMYAMPPYPYLATDYPTQLSLFTHHMWIGGFLIVGAAAHAAIFMVRDYDPAVNQNNVLDRVLRHRDAIISHLNWVCI 448

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 859811363 397 FLGFHSFGLYIHNDTMQALGRPQDMFSDKAISLQPIFAQWIQSLHTAAPGT-TSPNSLATASYIFGGDPVVLGSKIALMP 475
Cdd:COG5701  449 FLGFHSFGLYIHNDTMRALGRPQDMFSDTAIQLQPVFAQWIQNLHASAPGTaTAPNAGGTVSEAFGGDVVAVGGKVAMMP 528

                        490       500       510       520       530
                 ....*....|....*....|....*....|....*....|....*....|.
gi 859811363 476 MKLGTADFLVHHIHAFTIHVTALILFKGLLYARNSRLIPDKSNLGFRFPCD 526
Cdd:COG5701  529 IPLGTADFMIHHIHAFTIHVTVLILLKGVLFARSSRLIPDKANLGFRFPCD 579
PsaA_PsaB pfam00223
Photosystem I psaA/psaB protein;
1-526 0e+00

Photosystem I psaA/psaB protein;


Pssm-ID: 459719  Cd Length: 719  Bit Score: 858.31  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 859811363    1 NLHADAHDFDIQTKSLEEVSRKIFSAHFGQLSIIFLWLSGMHFHGAYFSNYTAWLINPLQIKPSAQSVYPIVGQEILNA- 79
Cdd:pfam00223  17 NLHATAHDFESHDGDTEELSRKIFSAHFGHLAIIFLWLSGNLFHGAWFSNFEAWLADPLHVKPIAHVVWPHFGQEILNAf 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 859811363   80 -DVGGNFQGIQITSGFFQIWRAEGITTQQQLYCTAIGALVMSALMLFAGWFHYHKAAPKLNWFQNAESMLNHHLSGLLGL 158
Cdd:pfam00223  97 tDVGAGFPGVQITSGLFQWWRTIGMTTNGQLYAGAIGLLILAALMLFAGWLHYHKFAPKLEWFKNAESMLNHHLAGLFGL 176

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 859811363  159 GSLAWAGHEIHIGNPINKLLDAGMDPKDLPNPHELLiNREFIGSLYPSFKEGLLPFFSLDWSKYSDILTFKGGLNPTTAS 238
Cdd:pfam00223 177 GSLAWTGHLIHVAIPESRLLDAGVAAADIPLPHPFL-NPDLMGQLYPSFAAGLGPFFTGNWGAYADILTFKGGLHPQTGS 255

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 859811363  239 LWLTDAAHHHLAIGVLFIIAGHMYRTNFGIGHSMKEILEAHKGP--FTGSGHKGLYEVLTTSWHAQLAINLALLGSLTII 316
Cdd:pfam00223 256 LWLTDIAHHHLAIAVLFIIAGHMYRTNFGIGHSMKEILEAHKGPggFTGEGHKGLYETLNNSWHAQLGLNLAMLGSVTII 335

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 859811363  317 IAHHMYAMPPYPFIAIDYPTQLSIFTHHMWIGAFCIVGGAAHGSIFMVRDYDATLNYNNLLDRVIRHRDAIISHLNWVCI 396
Cdd:pfam00223 336 VAHHMYALPPYPYIATDYTTQAALFTHHQWIGGFLMVGAFAHGAIFMVRDYDPEVNKNNVLDRVLEHRDAIISHLSWVCL 415

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 859811363  397 FLGFHSFGLYIHNDTMQALGRPQDMFSDKAISLQPIFAQWIQ----------SLHTAAPGTTSPNSLATASYIF-GGDPV 465
Cdd:pfam00223 416 FLGFHTFGLYVHNDTMRAFGRPEDMFSDTAILLEPVFAQWIQaahgkalygfNLLASAPGSTAPNAGAGVSDVWlPGDAV 495

                         490       500       510       520       530       540
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 859811363  466 VLGSKIALMPMKLGTADFLVHHIHAFTIHVTALILFKGLLYARNSRLIPDKSNLGFRFPCD 526
Cdd:pfam00223 496 NVGGKVSLFPIPLGTADFLVHHIIAFGIHVTVLILLKGVLDARSSRLMPDKKDLGFRFPCD 556
 
Name Accession Description Interval E-value
psaA CHL00056
photosystem I P700 chlorophyll a apoprotein A1
 1-526 0e+00

photosystem I P700 chlorophyll a apoprotein A1


Pssm-ID: 176996  Cd Length: 750  Bit Score: 1020.44  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 859811363   1 NLHADAHDFDIQTKSLEEVSRKIFSAHFGQLSIIFLWLSGMHFHGAYFSNYTAWLINPLQIKPSAQSVYPIVGQEILNAD 80
Cdd:CHL00056  48 NLHADAHDFDSHTSDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSDPTHIKPSAQVVWPIVGQEILNGD 127

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 859811363  81 VGGNFQGIQITSGFFQIWRAEGITTQQQLYCTAIGALVMSALMLFAGWFHYHKAAPKLNWFQNAESMLNHHLSGLLGLGS 160
Cdd:CHL00056 128 VGGGFRGIQITSGFFQIWRASGITSELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGS 207

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 859811363 161 LAWAGHEIHIGNPINKLLDAGMDPKDLPNPHELLINREFIGSLYPSFKEGLLPFFSLDWSKYSDILTFKGGLNPTTASLW 240
Cdd:CHL00056 208 LSWAGHQIHVSLPINQLLDAGVDPKEIPLPHEFILNRDLLAQLYPSFAKGLTPFFTLNWSEYSDFLTFRGGLNPVTGGLW 287

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 859811363 241 LTDAAHHHLAIGVLFIIAGHMYRTNFGIGHSMKEILEAHKGPFTGSGHKGLYEVLTTSWHAQLAINLALLGSLTIIIAHH 320
Cdd:CHL00056 288 LTDIAHHHLAIAVLFLIAGHMYRTNWGIGHSLKEILEAHKGPFTGEGHKGLYEILTTSWHAQLALNLAMLGSLTIIVAHH 367

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 859811363 321 MYAMPPYPFIAIDYPTQLSIFTHHMWIGAFCIVGGAAHGSIFMVRDYDATLNYNNLLDRVIRHRDAIISHLNWVCIFLGF 400
Cdd:CHL00056 368 MYSMPPYPYLATDYGTQLSLFTHHMWIGGFLIVGAAAHAAIFMVRDYDPTTRYNNLLDRVLRHRDAIISHLNWVCIFLGF 447

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 859811363 401 HSFGLYIHNDTMQALGRPQDMFSDKAISLQPIFAQWIQSLHTAAPGTTSPNSLATASYIFGGDPVV-LGSKIALMPMKLG 479
Cdd:CHL00056 448 HSFGLYIHNDTMSALGRPQDMFSDTAIQLQPIFAQWIQNTHALAPGATAPGATASTSLTWGGGDLVaVGGKVALLPIPLG 527

                        490       500       510       520
                 ....*....|....*....|....*....|....*....|....*..
gi 859811363 480 TADFLVHHIHAFTIHVTALILFKGLLYARNSRLIPDKSNLGFRFPCD 526
Cdd:CHL00056 528 TADFLVHHIHAFTIHVTVLILLKGVLFARSSRLIPDKANLGFRFPCD 574
psaA TIGR01335
photosystem I core protein PsaA; The core proteins of photosystem I are PsaA and PsaB, ...
 1-526 0e+00

photosystem I core protein PsaA; The core proteins of photosystem I are PsaA and PsaB, homologous integral membrane proteins that form a heterodimer. The heterodimer binds the electron-donating chlorophyll dimer P700, as well as chlorophyll, phylloquinone, and 4FE-4S electron acceptors. This model describes PsaA only. [Energy metabolism, Photosynthesis]


Pssm-ID: 130402 [Multi-domain]  Cd Length: 752  Bit Score: 937.07  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 859811363    1 NLHADAHDFDIQTKSLEEVSRKIFSAHFGQLSIIFLWLSGMHFHGAYFSNYTAWLINPLQIKPSAQSVYPIVGQEILNAD 80
Cdd:TIGR01335  51 NLHADAHDFDSHTSDLEDISRKIFSAHFGQLSVIFIWLSGMYFHGARFSNYEAWLSDPTHIKPSAQVVWPIVGQEILNGD 130

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 859811363   81 VGGNFQGIQITSGFFQIWRAEGITTQQQLYCTAIGALVMSALMLFAGWFHYHKAAPKLNWFQNAESMLNHHLSGLLGLGS 160
Cdd:TIGR01335 131 VGGGFHGIQITSGFFQLWRASGITNELQLYVTAIGGLVMAGLMLFAGWFHYHKAAPKLEWFQNVESMLNHHLAGLLGLGS 210

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 859811363  161 LAWAGHEIHIGNPINKLLDAGMDPKDLPNPHELLINREFIGSLYPSFKEGLLPFFSLDWSKYSDILTFKGGLNPTTASLW 240
Cdd:TIGR01335 211 LSWAGHQIHVSLPINKLLDAGVDPKDIPLPHEFILNRELMAQLYPSFASGLTPFFTLNWGAYSDFLTFRGGLNPVTGGLW 290

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 859811363  241 LTDAAHHHLAIGVLFIIAGHMYRTNFGIGHSMKEILEAHKGPFTGSGHKGLYEVLTTSWHAQLAINLALLGSLTIIIAHH 320
Cdd:TIGR01335 291 LSDIAHHHLAIAVLFIIAGHMYRTNWGIGHSIKEILEAHKGPFTGSGHKGLYEALTTSWHAQLAINLAMLGSLSIIVAHH 370

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 859811363  321 MYAMPPYPFIAIDYPTQLSIFTHHMWIGAFCIVGGAAHGSIFMVRDYDATLNYNNLLDRVIRHRDAIISHLNWVCIFLGF 400
Cdd:TIGR01335 371 MYAMPPYPYLATDYPTQLSLFTHHMWIGGFLIVGAAAHGAIFMVRDYDPSQNYNNVLDRVIRHRDAIISHLNWVCIFLGF 450

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 859811363  401 HSFGLYIHNDTMQALGRPQDMFSDKAISLQPIFAQWIQSLHTAAPGTTSPNSLATASYIFGGDPVVLGSKIALMPMKLGT 480
Cdd:TIGR01335 451 HSFGLYIHNDTMRALGRPQDMFSDTAIQLQPVFAQWIQNLHTLAPGNTAPNALATTSYAFGGEVVAVGGKVAMMPIKLGT 530

                         490       500       510       520
                  ....*....|....*....|....*....|....*....|....*.
gi 859811363  481 ADFLVHHIHAFTIHVTALILFKGLLYARNSRLIPDKSNLGFRFPCD 526
Cdd:TIGR01335 531 ADFMVHHIHAFTIHVTVLILLKGVLFARNSRLIPDKANLGFRFPCD 576
PsaA COG5701
Photosystem I reaction center subunit A1, PsaA [Energy production and conversion]; Photosystem ...
 1-526 0e+00

Photosystem I reaction center subunit A1, PsaA [Energy production and conversion]; Photosystem I reaction center subunit A1, PsaA is part of the Pathway/BioSystem: Photosystem I


Pssm-ID: 444411  Cd Length: 755  Bit Score: 903.44  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 859811363   1 NLHADAHDFDIQTKSLEEVSRKIFSAHFGQLSIIFLWLSGMHFHGAYFSNYTAWLINPLQIKPSAQSVYPIVGQEILNAD 80
Cdd:COG5701   50 NLHALAHDFDTHTSDLEEISRKIFSAHFGHLAVVFIWLSGMFFHGARFSNYTAWLADPTGVKPSAQVVWPIVGQEILNAD 129

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 859811363  81 VGGNFQGIQITSGFFQIWRAEGITTQQQLYCTAIGALVMSALMLFAGWFHYHKAAPKLNWFQNAESMLNHHLSGLLGLGS 160
Cdd:COG5701  130 VGGGFHGIQITSGLFQMWRAWGITNEFQLYCTAIGALVMAALMLFAGWFHYHKRAPKLEWFQNVESMLNHHLAGLLGLGS 209

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 859811363 161 LAWAGHEIHIGNPINKLLDAGMDPKDLPNPHELLiNREFIGSLYPSFKEGLLPFFSLDWSKYSDILTFKGGLNPTTASLW 240
Cdd:COG5701  210 LAWTGHLIHVSLPVNALLDAGVAAADIPLPHEFL-NPSLMAQLYPGFASGVGPFFTLNWGAFSDFLTFKGGLNPVTGGLW 288

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 859811363 241 LTDAAHHHLAIGVLFIIAGHMYRTNFGIGHSMKEILEAHKGP---FTG-SGHKGLYEVLTTSWHAQLAINLALLGSLTII 316
Cdd:COG5701  289 LTDIAHHHLAIAVLFIIAGHMYRTNWGIGHSMKEILEAHKGPpllFTGpEGHKGLYEVLTTSWHAQLAINLAMMGSLSII 368

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 859811363 317 IAHHMYAMPPYPFIAIDYPTQLSIFTHHMWIGAFCIVGGAAHGSIFMVRDYDATLNYNNLLDRVIRHRDAIISHLNWVCI 396
Cdd:COG5701  369 VAHHMYAMPPYPYLATDYPTQLSLFTHHMWIGGFLIVGAAAHAAIFMVRDYDPAVNQNNVLDRVLRHRDAIISHLNWVCI 448

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 859811363 397 FLGFHSFGLYIHNDTMQALGRPQDMFSDKAISLQPIFAQWIQSLHTAAPGT-TSPNSLATASYIFGGDPVVLGSKIALMP 475
Cdd:COG5701  449 FLGFHSFGLYIHNDTMRALGRPQDMFSDTAIQLQPVFAQWIQNLHASAPGTaTAPNAGGTVSEAFGGDVVAVGGKVAMMP 528

                        490       500       510       520       530
                 ....*....|....*....|....*....|....*....|....*....|.
gi 859811363 476 MKLGTADFLVHHIHAFTIHVTALILFKGLLYARNSRLIPDKSNLGFRFPCD 526
Cdd:COG5701  529 IPLGTADFMIHHIHAFTIHVTVLILLKGVLFARSSRLIPDKANLGFRFPCD 579
PsaA_PsaB pfam00223
Photosystem I psaA/psaB protein;
1-526 0e+00

Photosystem I psaA/psaB protein;


Pssm-ID: 459719  Cd Length: 719  Bit Score: 858.31  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 859811363    1 NLHADAHDFDIQTKSLEEVSRKIFSAHFGQLSIIFLWLSGMHFHGAYFSNYTAWLINPLQIKPSAQSVYPIVGQEILNA- 79
Cdd:pfam00223  17 NLHATAHDFESHDGDTEELSRKIFSAHFGHLAIIFLWLSGNLFHGAWFSNFEAWLADPLHVKPIAHVVWPHFGQEILNAf 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 859811363   80 -DVGGNFQGIQITSGFFQIWRAEGITTQQQLYCTAIGALVMSALMLFAGWFHYHKAAPKLNWFQNAESMLNHHLSGLLGL 158
Cdd:pfam00223  97 tDVGAGFPGVQITSGLFQWWRTIGMTTNGQLYAGAIGLLILAALMLFAGWLHYHKFAPKLEWFKNAESMLNHHLAGLFGL 176

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 859811363  159 GSLAWAGHEIHIGNPINKLLDAGMDPKDLPNPHELLiNREFIGSLYPSFKEGLLPFFSLDWSKYSDILTFKGGLNPTTAS 238
Cdd:pfam00223 177 GSLAWTGHLIHVAIPESRLLDAGVAAADIPLPHPFL-NPDLMGQLYPSFAAGLGPFFTGNWGAYADILTFKGGLHPQTGS 255

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 859811363  239 LWLTDAAHHHLAIGVLFIIAGHMYRTNFGIGHSMKEILEAHKGP--FTGSGHKGLYEVLTTSWHAQLAINLALLGSLTII 316
Cdd:pfam00223 256 LWLTDIAHHHLAIAVLFIIAGHMYRTNFGIGHSMKEILEAHKGPggFTGEGHKGLYETLNNSWHAQLGLNLAMLGSVTII 335

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 859811363  317 IAHHMYAMPPYPFIAIDYPTQLSIFTHHMWIGAFCIVGGAAHGSIFMVRDYDATLNYNNLLDRVIRHRDAIISHLNWVCI 396
Cdd:pfam00223 336 VAHHMYALPPYPYIATDYTTQAALFTHHQWIGGFLMVGAFAHGAIFMVRDYDPEVNKNNVLDRVLEHRDAIISHLSWVCL 415

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 859811363  397 FLGFHSFGLYIHNDTMQALGRPQDMFSDKAISLQPIFAQWIQ----------SLHTAAPGTTSPNSLATASYIF-GGDPV 465
Cdd:pfam00223 416 FLGFHTFGLYVHNDTMRAFGRPEDMFSDTAILLEPVFAQWIQaahgkalygfNLLASAPGSTAPNAGAGVSDVWlPGDAV 495

                         490       500       510       520       530       540
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 859811363  466 VLGSKIALMPMKLGTADFLVHHIHAFTIHVTALILFKGLLYARNSRLIPDKSNLGFRFPCD 526
Cdd:pfam00223 496 NVGGKVSLFPIPLGTADFLVHHIIAFGIHVTVLILLKGVLDARSSRLMPDKKDLGFRFPCD 556
psaB CHL00054
photosystem I P700 chlorophyll a apoprotein A2
 4-526 2.68e-168

photosystem I P700 chlorophyll a apoprotein A2


Pssm-ID: 176995  Cd Length: 734  Bit Score: 493.86  E-value: 2.68e-168
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 859811363   4 ADAHDFDIQTKSLEE-VSRKIFSAHFGQLSIIFLWLSGMHFHGAYFSNYTAWLINPLQIKPSAQSVY-PIVGQEILNADV 81
Cdd:CHL00054  26 ATAHDFESHDDITEErLYQKIFASHFGQLAIIFLWTSGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWdPHFGQPAVEAFT 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 859811363  82 GGNFQG-IQI-TSGFFQIWRAEGITTQQQLYCTAIGALVMSALMLFAGWFHYH-KAAPKLNWFQNAESMLNHHLSGLLGL 158
Cdd:CHL00054 106 RGGALGpVNIaYSGVYQWWYTIGLRTNEDLYTGALFLLFLSALSLIAGWLHLQpKWKPSVSWFKNAESRLNHHLSGLFGV 185

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 859811363 159 GSLAWAGHEIHIGNPINKLLDAGMDP--KDLPNPhellinrefigslypsfkEGLLPFFSLDWSKYSD------------ 224
Cdd:CHL00054 186 SSLAWTGHLVHVAIPESRGEHVRWNNflDVLPHP------------------QGLGPLFTGQWNLYAQnpdssshlfgts 247

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 859811363 225 ------ILTFKGGLNPTTASLWLTDAAHHHLAIGVLFIIAGHMYRTNFGIGHSMKEILEAHKGP--FTGSGHKGLYEVLT 296
Cdd:CHL00054 248 qgagtaILTFLGGFHPQTQSLWLTDIAHHHLAIAVVFLIAGHMYRTNFGIGHSMKDILEAHIPPggRLGRGHKGLYDTIN 327

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 859811363 297 TSWHAQLAINLALLGSLTIIIAHHMYAMPPYPFIAIDYPTQLSIFTHHMWIGAFCIVGGAAHGSIFMVRDYDATLNYNNL 376
Cdd:CHL00054 328 NSLHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHHQYIAGFIMTGAFAHGAIFFIRDYNPEQNEDNV 407

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 859811363 377 LDRVIRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMQALGRPQdmfsdKAISLQPIFAQWIQSLHTAA--------PGTT 448
Cdd:CHL00054 408 LARMLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPE-----KQILIEPIFAQWIQSAHGKTsygfdvllSSTN 482

                        490       500       510       520       530       540       550
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 859811363 449 SPNSLATASYIFGGDPVVLGSKIALMPMKLGTADFLVHHIHAFTIHVTALILFKGLLYARNSRLIPDKSNLGFRFPCD 526
Cdd:CHL00054 483 SPAFNAGRSIWLPGWLNAINENSNSLFLTIGPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCD 560
PsaB COG5702
Photosystem I reaction center subunit A2, PsaB [Energy production and conversion]; Photosystem ...
 4-526 1.39e-154

Photosystem I reaction center subunit A2, PsaB [Energy production and conversion]; Photosystem I reaction center subunit A2, PsaB is part of the Pathway/BioSystem: Photosystem I


Pssm-ID: 444412  Cd Length: 741  Bit Score: 458.96  E-value: 1.39e-154
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 859811363   4 ADAHDFDIQTKSLEE-VSRKIFSAHFGQLSIIFLWLSGMHFHGAYFSNYTAWLINPLQIKPSAQSVY-PIVGQEILNA-- 79
Cdd:COG5702   26 ATAHDFESHDGMTEEnLYQKIFATHFGHLAIIFLWSSGNLFHVAWQGNFEQWIQDPLNVRPIAHAIWdPHFGKPAIEAft 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 859811363  80 DVGGNFQGIQITSGFFQIWRAEGITTQQQLYCTAIGALVMSALMLFAGWFHYH-KAAPKLNWFQNAESMLNHHLSGLLGL 158
Cdd:COG5702  106 QAGASNPVNICYSGLYHWWYTIGMRTNTDLYQGSIFLLLLAAVMLFAGWLHLQpKFRPSLAWFKNAESRLNHHLAGLFGV 185

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 859811363 159 GSLAWAGHEIHIGNPINKLLDAGMDP--KDLPNPhellinrefigslypsfkEGLLPFFSLDWSKYSD------------ 224
Cdd:COG5702  186 SSLAWTGHLVHVAIPESRGQHVGWDNflSTLPHP------------------AGLAPFFTGNWGVYAQnpdtaghafgts 247

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 859811363 225 ------ILTFKGGLNPTTASLWLTDAAHHHLAIGVLFIIAGHMYRTNFGIGHSMKEILEAHKGP------FTGSGHKGLY 292
Cdd:COG5702  248 qgagtaILTFLGGFHPQTESLWLTDIAHHHLAIAVIFIIAGHMYRTNFGIGHSIKEILEAHQGPgrsgffKTGLGHKGLY 327

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 859811363 293 EVLTTSWHAQLAINLALLGSLTIIIAHHMYAMPPYPFIAIDYPTQLSIFTHHMWIGAFCIVGGAAHGSIFMVRDYDATLN 372
Cdd:COG5702  328 DTINNSLHFQLGLALACLGVITSLVAQHMYALPPYAFIAQDYTTQAALYTHHQYIAGFLMIGAFAHGAIFFVRDYDPEAN 407

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 859811363 373 YNNLLDRVIRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMQALGRPQdmfsdKAISLQPIFAQWIQSLHTAA-----PGT 447
Cdd:COG5702  408 KDNVLARMLEHKEAIISHLSWVSLFLGFHTLGLYVHNDVVVAFGTPE-----KQILIEPVFAQFIQAAHGKVlygidTLL 482

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 859811363 448 TSPNSLATASYIFGGDPVVLG------SKIALMPMKLGTADFLVHHIHAFTIHVTALILFKGLLYARNSRLIPDKSNLGF 521
Cdd:COG5702  483 SNPDSVASTAWPNYGNVWLPGwleavnNGANSLFLTIGPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGY 562


                 ....*
gi 859811363 522 RFPCD 526
Cdd:COG5702  563 AFPCD 567
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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