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Conserved domains on  [gi|870811537|gb|AKP17589|]
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beta-D-glucuronidase, partial [Escherichia sp. UIWRF0683]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Bgal_small_N super family cl46900
Beta galactosidase small chain; This domain comprises the small chain of dimeric ...
1-425 0e+00

Beta galactosidase small chain; This domain comprises the small chain of dimeric beta-galactosidases EC:3.2.1.23. This domain is also found in single chain beta-galactosidase.


The actual alignment was detected with superfamily member PRK10150:

Pssm-ID: 481240 [Multi-domain]  Cd Length: 604  Bit Score: 814.24  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 870811537   1 LDGLWAFSLDRENCGIDQRWWESALQESRAIAVPGSFNDQFADADIRNYAGNVWYQREVFIPKGWAGQRIVLRFDAVTHY 80
Cdd:PRK10150  15 LSGLWAFKLDRENCGIDQRWWESALPESRAMAVPGSFNDQFADADIRNYVGDVWYQREVFIPKGWAGQRIVLRFGSVTHY 94
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 870811537  81 GKVWVNNQEVMEHQGGYTPFEADVTPYVIAGKSVRITVCVNNELNWQTIPPGMVITDENGKKKQSYFHDFFNYAGIHRSV 160
Cdd:PRK10150  95 AKVWVNGQEVMEHKGGYTPFEADITPYVYAGKSVRITVCVNNELNWQTLPPGNVIEDGNGKKKQKYNFDFFNYAGIHRPV 174
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 870811537 161 MLYTTPNTWVDDITVVTHVAQDCNHASVDWQVVTNGD---VSVELRDADQQVVATGQGTSGTLQVVNPHLWQPGEGYLYE 237
Cdd:PRK10150 175 MLYTTPKTHIDDITVVTELAQDLNHASVDWSVETNGDvdsVSVTLRDADGQVVATGQGTSGTLQVVNPHLWQPGEGYLYT 254
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 870811537 238 LCVT-AKSQTEYDIYPLRVGIRSVAVKGEQFLINHKPFYFTGFGRHEDADLRGKGFDNVLMVHDHALMDWIGANSYRTSH 316
Cdd:PRK10150 255 LCVElAKSGTECDTYPLRFGIRSVAVKGGQFLINGKPFYFKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRTSH 334
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 870811537 317 YPYAEEMLDWADEHGIVVIDETAAVGFNLSLGIGFEAGNKPKELYSEEAVNGETQQAHLQAIKELIARDKNHPSVVMWSI 396
Cdd:PRK10150 335 YPYSEEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQAIRELIARDKNHPSVVMWSI 414
                        410       420
                 ....*....|....*....|....*....
gi 870811537 397 ANEPDTRPQGAREYFAPLAEATRKLDPTR 425
Cdd:PRK10150 415 ANEPASREQGAREYFAPLAELTRKLDPTR 443
 
Name Accession Description Interval E-value
PRK10150 PRK10150
beta-D-glucuronidase; Provisional
1-425 0e+00

beta-D-glucuronidase; Provisional


Pssm-ID: 236657 [Multi-domain]  Cd Length: 604  Bit Score: 814.24  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 870811537   1 LDGLWAFSLDRENCGIDQRWWESALQESRAIAVPGSFNDQFADADIRNYAGNVWYQREVFIPKGWAGQRIVLRFDAVTHY 80
Cdd:PRK10150  15 LSGLWAFKLDRENCGIDQRWWESALPESRAMAVPGSFNDQFADADIRNYVGDVWYQREVFIPKGWAGQRIVLRFGSVTHY 94
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 870811537  81 GKVWVNNQEVMEHQGGYTPFEADVTPYVIAGKSVRITVCVNNELNWQTIPPGMVITDENGKKKQSYFHDFFNYAGIHRSV 160
Cdd:PRK10150  95 AKVWVNGQEVMEHKGGYTPFEADITPYVYAGKSVRITVCVNNELNWQTLPPGNVIEDGNGKKKQKYNFDFFNYAGIHRPV 174
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 870811537 161 MLYTTPNTWVDDITVVTHVAQDCNHASVDWQVVTNGD---VSVELRDADQQVVATGQGTSGTLQVVNPHLWQPGEGYLYE 237
Cdd:PRK10150 175 MLYTTPKTHIDDITVVTELAQDLNHASVDWSVETNGDvdsVSVTLRDADGQVVATGQGTSGTLQVVNPHLWQPGEGYLYT 254
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 870811537 238 LCVT-AKSQTEYDIYPLRVGIRSVAVKGEQFLINHKPFYFTGFGRHEDADLRGKGFDNVLMVHDHALMDWIGANSYRTSH 316
Cdd:PRK10150 255 LCVElAKSGTECDTYPLRFGIRSVAVKGGQFLINGKPFYFKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRTSH 334
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 870811537 317 YPYAEEMLDWADEHGIVVIDETAAVGFNLSLGIGFEAGNKPKELYSEEAVNGETQQAHLQAIKELIARDKNHPSVVMWSI 396
Cdd:PRK10150 335 YPYSEEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQAIRELIARDKNHPSVVMWSI 414
                        410       420
                 ....*....|....*....|....*....
gi 870811537 397 ANEPDTRPQGAREYFAPLAEATRKLDPTR 425
Cdd:PRK10150 415 ANEPASREQGAREYFAPLAELTRKLDPTR 443
LacZ COG3250
Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism];
3-425 5.91e-104

Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism];


Pssm-ID: 442481 [Multi-domain]  Cd Length: 638  Bit Score: 321.71  E-value: 5.91e-104
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 870811537   3 GLWAFSLDRENCGIDQRWWESALQEsraIAVPGSFNDQFA------DADIRNYAGNVWYQREVFIPKGWAGQRIVLRFDA 76
Cdd:COG3250    1 GGWKFRLGDAPEGAKPDFDDSGWDP---ITVPGDWELDLYglpdpfVGPWYLYNGVGWYRRTFTVPASWKGKRVFLHFEG 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 870811537  77 VTHYGKVWVNNQEVMEHQGGYTPFEADVTPYVIAGKSVrITVCVNNELNWQTIPPGmvitdengkkkqsyfhDFFNYAGI 156
Cdd:COG3250   78 VDTAAEVWVNGKKVGYHEGGFTPFEFDITDYLKPGENV-LAVRVDNPSDGSYLEGQ----------------DWWRTSGI 140
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 870811537 157 HRSVMLYTTPNTWVDDITVVTHVAQDcnHASVDWQVVTNGD------VSVELRDADQQVVATGQGT-----------SGT 219
Cdd:COG3250  141 YRDVWLEATPKVHIEDVFVTPDLDDG--SATLTVEVELENEsdagvtVEVTLLDADGKVVATATAKvtlaageentvTLT 218
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 870811537 220 LQVVNPHLWQPGEGYLYELCVTAKSQ-TEYDIYPLRVGIRSVAVKGE-QFLINHKPFYFTGFGRHEDADLRGKGFDNVLM 297
Cdd:COG3250  219 LTVPNPKLWSPEDPNLYTLVVTLKDDgKVVDTVSTRFGFRTIEIDGDgGFLLNGKPVFLKGVNRHEDWPDDGRAVTDEAM 298
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 870811537 298 VHDHALMDWIGANSYRTSHYPYAEEMLDWADEHGIVVIDEtaavgFNLSlGIGFEAGNKpkelyseeavngETQQAHLQA 377
Cdd:COG3250  299 RRDLELMKEAGFNAVRTSHYPEDPEFYDLCDELGLLVWDE-----APFE-WHGMLGDDP------------EFLEAVEAE 360
                        410       420       430       440
                 ....*....|....*....|....*....|....*....|....*...
gi 870811537 378 IKELIARDKNHPSVVMWSIANEPDTRPqgareYFAPLAEATRKLDPTR 425
Cdd:COG3250  361 LREMVRRDRNHPSIILWSGGNESGGGP-----NFAALYEWVKELDPTR 403
Glyco_hydro_2_C pfam02836
Glycosyl hydrolases family 2, TIM barrel domain; This family contains beta-galactosidase, ...
260-425 3.69e-76

Glycosyl hydrolases family 2, TIM barrel domain; This family contains beta-galactosidase, beta-mannosidase and beta-glucuronidase activities.


Pssm-ID: 397119 [Multi-domain]  Cd Length: 302  Bit Score: 239.27  E-value: 3.69e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 870811537  260 VAVKGEQFLINHKPFYFTGFGRHEDADLRGKGFDNVLMVHDHALMDWIGANSYRTSHYPYAEEMLDWADEHGIVVIDETA 339
Cdd:pfam02836   1 VEVKDGLFLINGKPFYFRGVNRHEDHDRRGRGFDMDLMVKDIQLMKQNNINAVRTSHYPNHPEWYQLCDEYGIYVIDEAN 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 870811537  340 AVGFNLSLGIGfEAGNkpkeLYSEEAVNGETQQAHLQAIKELIARDKNHPSVVMWSIANEPdtrpqGAREYFAPLAEATR 419
Cdd:pfam02836  81 LETHGLWQKFG-EIEP----SYSELTDNPEWLPAHLERAEELVQRDKNHPSVIIWSLGNES-----GAGENIAAMYAATK 150

                  ....*.
gi 870811537  420 KLDPTR 425
Cdd:pfam02836 151 SLDPTR 156
GalB NF041463
beta-galactosidase GalB;
51-425 1.58e-32

beta-galactosidase GalB;


Pssm-ID: 469351 [Multi-domain]  Cd Length: 799  Bit Score: 130.42  E-value: 1.58e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 870811537  51 GNVWYQREVFIPKGWAGQRIVLRFDAVTHYGKVWVNNQEVMEHQGGYTPFEADVTPYVIAGKSVRITVCVNNELN---WQ 127
Cdd:NF041463  64 GVAWYRKKLDIPASDAGKSIFLDIDGAMSYAMVWLNGQLVGGWPYGYNSWRLDLTPYLKPGGENQLAIRLDNPPEssrWY 143
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 870811537 128 tipPGmvitdengkkkqsyfhdffnyAGIHRSVML--------------YTTPNTWVDDITVVTHVAQDcNHASVDWQVv 193
Cdd:NF041463 144 ---PG---------------------GGLYRNVWLtktnpvhvaqwgtfVTTPEVSADSATVDLAVTVD-NDSAADADV- 197
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 870811537 194 tngDVSVELRDAD-----------------QQVVATGQGT-SGTLQVVNPHLWQPG---EGYLYeLCVTAKSQTE--YDI 250
Cdd:NF041463 198 ---EVSTEIYALDadgkrtgkavarfapasLTVAAGESATvSGSLTIANPRLWGPPptqTPNRY-VAVTTVYQGGkvVDR 273
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 870811537 251 YPLRVGIRSV---AVKGeqFLINHKPFYFTGFGRHEDADLRGKGFdNVlmvhdHA------LMDWIGANSYRTSHYPYAE 321
Cdd:NF041463 274 YETPFGIRSLrfdPDRG--VLVNGEHIRLQGVNQHHDLGALGAAF-NV-----RAaerqleILREMGCNAIRMAHNPPAP 345
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 870811537 322 EMLDWADEHGIVVIDETaavgfnlslgigFEAGNKPKELYSEEAVNGETQQAHLQAikeLIARDKNHPSVVMWSIANE-- 399
Cdd:NF041463 346 ELLELTDRMGFLVVDEI------------FDSWERKKTPLDFHLIFPDWHEQDLRA---MIRRDRNHPSVIMWSIGNEvg 410
                        410       420       430
                 ....*....|....*....|....*....|
gi 870811537 400 ----PDTRPQGAREyfapLAEATRKLDPTR 425
Cdd:NF041463 411 eqytGEAGAAIARR----LHDIVKEEDPTR 436
 
Name Accession Description Interval E-value
PRK10150 PRK10150
beta-D-glucuronidase; Provisional
1-425 0e+00

beta-D-glucuronidase; Provisional


Pssm-ID: 236657 [Multi-domain]  Cd Length: 604  Bit Score: 814.24  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 870811537   1 LDGLWAFSLDRENCGIDQRWWESALQESRAIAVPGSFNDQFADADIRNYAGNVWYQREVFIPKGWAGQRIVLRFDAVTHY 80
Cdd:PRK10150  15 LSGLWAFKLDRENCGIDQRWWESALPESRAMAVPGSFNDQFADADIRNYVGDVWYQREVFIPKGWAGQRIVLRFGSVTHY 94
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 870811537  81 GKVWVNNQEVMEHQGGYTPFEADVTPYVIAGKSVRITVCVNNELNWQTIPPGMVITDENGKKKQSYFHDFFNYAGIHRSV 160
Cdd:PRK10150  95 AKVWVNGQEVMEHKGGYTPFEADITPYVYAGKSVRITVCVNNELNWQTLPPGNVIEDGNGKKKQKYNFDFFNYAGIHRPV 174
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 870811537 161 MLYTTPNTWVDDITVVTHVAQDCNHASVDWQVVTNGD---VSVELRDADQQVVATGQGTSGTLQVVNPHLWQPGEGYLYE 237
Cdd:PRK10150 175 MLYTTPKTHIDDITVVTELAQDLNHASVDWSVETNGDvdsVSVTLRDADGQVVATGQGTSGTLQVVNPHLWQPGEGYLYT 254
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 870811537 238 LCVT-AKSQTEYDIYPLRVGIRSVAVKGEQFLINHKPFYFTGFGRHEDADLRGKGFDNVLMVHDHALMDWIGANSYRTSH 316
Cdd:PRK10150 255 LCVElAKSGTECDTYPLRFGIRSVAVKGGQFLINGKPFYFKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRTSH 334
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 870811537 317 YPYAEEMLDWADEHGIVVIDETAAVGFNLSLGIGFEAGNKPKELYSEEAVNGETQQAHLQAIKELIARDKNHPSVVMWSI 396
Cdd:PRK10150 335 YPYSEEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQAIRELIARDKNHPSVVMWSI 414
                        410       420
                 ....*....|....*....|....*....
gi 870811537 397 ANEPDTRPQGAREYFAPLAEATRKLDPTR 425
Cdd:PRK10150 415 ANEPASREQGAREYFAPLAELTRKLDPTR 443
LacZ COG3250
Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism];
3-425 5.91e-104

Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism];


Pssm-ID: 442481 [Multi-domain]  Cd Length: 638  Bit Score: 321.71  E-value: 5.91e-104
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 870811537   3 GLWAFSLDRENCGIDQRWWESALQEsraIAVPGSFNDQFA------DADIRNYAGNVWYQREVFIPKGWAGQRIVLRFDA 76
Cdd:COG3250    1 GGWKFRLGDAPEGAKPDFDDSGWDP---ITVPGDWELDLYglpdpfVGPWYLYNGVGWYRRTFTVPASWKGKRVFLHFEG 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 870811537  77 VTHYGKVWVNNQEVMEHQGGYTPFEADVTPYVIAGKSVrITVCVNNELNWQTIPPGmvitdengkkkqsyfhDFFNYAGI 156
Cdd:COG3250   78 VDTAAEVWVNGKKVGYHEGGFTPFEFDITDYLKPGENV-LAVRVDNPSDGSYLEGQ----------------DWWRTSGI 140
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 870811537 157 HRSVMLYTTPNTWVDDITVVTHVAQDcnHASVDWQVVTNGD------VSVELRDADQQVVATGQGT-----------SGT 219
Cdd:COG3250  141 YRDVWLEATPKVHIEDVFVTPDLDDG--SATLTVEVELENEsdagvtVEVTLLDADGKVVATATAKvtlaageentvTLT 218
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 870811537 220 LQVVNPHLWQPGEGYLYELCVTAKSQ-TEYDIYPLRVGIRSVAVKGE-QFLINHKPFYFTGFGRHEDADLRGKGFDNVLM 297
Cdd:COG3250  219 LTVPNPKLWSPEDPNLYTLVVTLKDDgKVVDTVSTRFGFRTIEIDGDgGFLLNGKPVFLKGVNRHEDWPDDGRAVTDEAM 298
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 870811537 298 VHDHALMDWIGANSYRTSHYPYAEEMLDWADEHGIVVIDEtaavgFNLSlGIGFEAGNKpkelyseeavngETQQAHLQA 377
Cdd:COG3250  299 RRDLELMKEAGFNAVRTSHYPEDPEFYDLCDELGLLVWDE-----APFE-WHGMLGDDP------------EFLEAVEAE 360
                        410       420       430       440
                 ....*....|....*....|....*....|....*....|....*...
gi 870811537 378 IKELIARDKNHPSVVMWSIANEPDTRPqgareYFAPLAEATRKLDPTR 425
Cdd:COG3250  361 LREMVRRDRNHPSIILWSGGNESGGGP-----NFAALYEWVKELDPTR 403
Glyco_hydro_2_C pfam02836
Glycosyl hydrolases family 2, TIM barrel domain; This family contains beta-galactosidase, ...
260-425 3.69e-76

Glycosyl hydrolases family 2, TIM barrel domain; This family contains beta-galactosidase, beta-mannosidase and beta-glucuronidase activities.


Pssm-ID: 397119 [Multi-domain]  Cd Length: 302  Bit Score: 239.27  E-value: 3.69e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 870811537  260 VAVKGEQFLINHKPFYFTGFGRHEDADLRGKGFDNVLMVHDHALMDWIGANSYRTSHYPYAEEMLDWADEHGIVVIDETA 339
Cdd:pfam02836   1 VEVKDGLFLINGKPFYFRGVNRHEDHDRRGRGFDMDLMVKDIQLMKQNNINAVRTSHYPNHPEWYQLCDEYGIYVIDEAN 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 870811537  340 AVGFNLSLGIGfEAGNkpkeLYSEEAVNGETQQAHLQAIKELIARDKNHPSVVMWSIANEPdtrpqGAREYFAPLAEATR 419
Cdd:pfam02836  81 LETHGLWQKFG-EIEP----SYSELTDNPEWLPAHLERAEELVQRDKNHPSVIIWSLGNES-----GAGENIAAMYAATK 150

                  ....*.
gi 870811537  420 KLDPTR 425
Cdd:pfam02836 151 SLDPTR 156
Glyco_hydro_2_N pfam02837
Glycosyl hydrolases family 2, sugar binding domain; This family contains beta-galactosidase, ...
1-166 3.94e-75

Glycosyl hydrolases family 2, sugar binding domain; This family contains beta-galactosidase, beta-mannosidase and beta-glucuronidase activities and has a jelly-roll fold. The domain binds the sugar moiety during the sugar-hydrolysis reaction.


Pssm-ID: 397120 [Multi-domain]  Cd Length: 169  Bit Score: 231.75  E-value: 3.94e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 870811537    1 LDGLWAFSLDRENCGIDQRWWESALQESRAIAVPGSFNDQ-----------FADADIRNYAGNVWYQREVFIPKGWAGQR 69
Cdd:pfam02837   4 LNGEWAFALFDAPCGAPQSWWESALQESRTIAVPSSWNDQpiytnveypidFADPFIPTYNGTGWYQRTFFIPSKWAGQR 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 870811537   70 IVLRFDAVTHYGKVWVNNQEVMEHQGGYTPFEADVTPYVIAGKSvRITVCVnneLNWQtipPGMVITDENGKkkqsYFHD 149
Cdd:pfam02837  84 IRLRFDGVTHYGEVWVNGQWVGEHQGGYTPFEFDLTPYVIAGKN-RIAVKV---LNWS---DG*YIEDQNGK----YFHD 152
                         170
                  ....*....|....*..
gi 870811537  150 FFNYAGIHRSVMLYTTP 166
Cdd:pfam02837 153 FWNYSGIYRDVSLLTTP 169
ebgA PRK10340
cryptic beta-D-galactosidase subunit alpha; Reviewed
55-425 1.50e-47

cryptic beta-D-galactosidase subunit alpha; Reviewed


Pssm-ID: 236673 [Multi-domain]  Cd Length: 1021  Bit Score: 174.86  E-value: 1.50e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 870811537   55 YQREVFIPKGWAGQRIVLRFDAVTHYGKVWVNNQEVMEHQGGYTPFEADVTPYVIAGKSVrITVCVnneLNWQTippGMV 134
Cdd:PRK10340  113 YQRTFTLSDGWQGKQTIIKFDGVETYFEVYVNGQYVGFSKGSRLTAEFDISAMVKTGDNL-LCVRV---MQWAD---STY 185
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 870811537  135 ITDEngkkkqsyfhDFFNYAGIHRSVMLYTTPNTWVDDITVVTHVAQDCNHASVDWQVVTNGDV------SVELRDADQQ 208
Cdd:PRK10340  186 LEDQ----------DMWWLAGIFRDVYLVGKPLTHINDFTVRTDFDEDYCDATLSCEVVLENLAaspvvtTLEYTLFDGE 255
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 870811537  209 -VVATGQGTSGTLQ----------VVNPHLWQPGEGYLYELCVTAK-SQTE-YDIYPLRVGIRSVAVKGEQFLINHKPFY 275
Cdd:PRK10340  256 rVVHSSAIDHLAIEkltsasfaftVEQPQQWSAESPYLYHLVMTLKdANGNvLEVVPQRVGFRDIKVRDGLFWINNRYVK 335
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 870811537  276 FTGFGRHEDADLRGKGFDNVLMVHDHALMDWIGANSYRTSHYPYAEEMLDWADEHGIVVIDET--AAVGFNLSlgigfea 353
Cdd:PRK10340  336 LHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRTAHYPNDPRFYELCDIYGLFVMAETdvESHGFANV------- 408
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 870811537  354 gnkpkELYSEEAVNGETQQAHLQAIKELIARDKNHPSVVMWSIANEpdtrpQGAREYFAPLAEATRKLDPTR 425
Cdd:PRK10340  409 -----GDISRITDDPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNE-----SGYGCNIRAMYHAAKALDDTR 470
lacZ PRK09525
beta-galactosidase;
1-399 9.01e-36

beta-galactosidase;


Pssm-ID: 236548 [Multi-domain]  Cd Length: 1027  Bit Score: 140.07  E-value: 9.01e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 870811537    1 LDGLWAFSLDRENCGIDQRWWESALQESRAIAVPGSFNDQFADADIrnYAgNV------------------WYQREVFIP 62
Cdd:PRK09525   55 LNGEWRFSYFPAPEAVPESWLECDLPDADTIPVPSNWQLHGYDAPI--YT-NVtypipvnppfvpeenptgCYSLTFTVD 131
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 870811537   63 KGW--AGQ-RIVlrFDAVTHYGKVWVNNQEVmehqgGYT-----PFEADVTPYVIAGKSvRITVCVnneLNWQtippgmv 134
Cdd:PRK09525  132 ESWlqSGQtRII--FDGVNSAFHLWCNGRWV-----GYSqdsrlPAEFDLSPFLRAGEN-RLAVMV---LRWS------- 193
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 870811537  135 itdengkkKQSYF--HDFFNYAGIHRSVMLYTTPNTWVDDITVVTHVAQDCNHASVDWQVVTNGD------VSVELRDAD 206
Cdd:PRK09525  194 --------DGSYLedQDMWRMSGIFRDVSLLHKPTTQLSDFHITTELDDDFRRAVLEVEAQVNGElrdelrVTVQLWDGE 265
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 870811537  207 QQVVATGQG---------------TSGTLQVVNPHLWQPGEGYLYELCVT--AKSQTEYDIYPLRVGIRSVAVKGEQFLI 269
Cdd:PRK09525  266 TLVASGTAPfgteiidergayadrVTLRLNVENPKLWSAETPNLYRAVVSllDADGTLIEAEAYDVGFRKVEIENGLLKL 345
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 870811537  270 NHKPFYFTGFGRHEDADLRGKGFDNVLMVHDHALMDWIGANSYRTSHYPYAEEMLDWADEHGIVVIDET-----AAVGFN 344
Cdd:PRK09525  346 NGKPLLIRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRCSHYPNHPLWYELCDRYGLYVVDEAniethGMVPMN 425
                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 870811537  345 -LSlgigfeagNKPKELyseeavngetqQAHLQAIKELIARDKNHPSVVMWSIANE 399
Cdd:PRK09525  426 rLS--------DDPRWL-----------PAMSERVTRMVQRDRNHPSIIIWSLGNE 462
GalB NF041463
beta-galactosidase GalB;
51-425 1.58e-32

beta-galactosidase GalB;


Pssm-ID: 469351 [Multi-domain]  Cd Length: 799  Bit Score: 130.42  E-value: 1.58e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 870811537  51 GNVWYQREVFIPKGWAGQRIVLRFDAVTHYGKVWVNNQEVMEHQGGYTPFEADVTPYVIAGKSVRITVCVNNELN---WQ 127
Cdd:NF041463  64 GVAWYRKKLDIPASDAGKSIFLDIDGAMSYAMVWLNGQLVGGWPYGYNSWRLDLTPYLKPGGENQLAIRLDNPPEssrWY 143
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 870811537 128 tipPGmvitdengkkkqsyfhdffnyAGIHRSVML--------------YTTPNTWVDDITVVTHVAQDcNHASVDWQVv 193
Cdd:NF041463 144 ---PG---------------------GGLYRNVWLtktnpvhvaqwgtfVTTPEVSADSATVDLAVTVD-NDSAADADV- 197
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 870811537 194 tngDVSVELRDAD-----------------QQVVATGQGT-SGTLQVVNPHLWQPG---EGYLYeLCVTAKSQTE--YDI 250
Cdd:NF041463 198 ---EVSTEIYALDadgkrtgkavarfapasLTVAAGESATvSGSLTIANPRLWGPPptqTPNRY-VAVTTVYQGGkvVDR 273
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 870811537 251 YPLRVGIRSV---AVKGeqFLINHKPFYFTGFGRHEDADLRGKGFdNVlmvhdHA------LMDWIGANSYRTSHYPYAE 321
Cdd:NF041463 274 YETPFGIRSLrfdPDRG--VLVNGEHIRLQGVNQHHDLGALGAAF-NV-----RAaerqleILREMGCNAIRMAHNPPAP 345
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 870811537 322 EMLDWADEHGIVVIDETaavgfnlslgigFEAGNKPKELYSEEAVNGETQQAHLQAikeLIARDKNHPSVVMWSIANE-- 399
Cdd:NF041463 346 ELLELTDRMGFLVVDEI------------FDSWERKKTPLDFHLIFPDWHEQDLRA---MIRRDRNHPSVIMWSIGNEvg 410
                        410       420       430
                 ....*....|....*....|....*....|
gi 870811537 400 ----PDTRPQGAREyfapLAEATRKLDPTR 425
Cdd:NF041463 411 eqytGEAGAAIARR----LHDIVKEEDPTR 436
Glyco_hydro_2 pfam00703
Glycosyl hydrolases family 2; This family contains beta-galactosidase, beta-mannosidase and ...
170-258 1.17e-07

Glycosyl hydrolases family 2; This family contains beta-galactosidase, beta-mannosidase and beta-glucuronidase activities.


Pssm-ID: 395572 [Multi-domain]  Cd Length: 106  Bit Score: 49.78  E-value: 1.17e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 870811537  170 VDDITVVTHVAQDCN---HASVDWQVVTNGDVSVELRD-----------ADQQVVATGQGTSGTLQVVNPHLWQPGEGYL 235
Cdd:pfam00703   3 IEDVFITPDLDDDKTakvTVEVELENDGDASVEVTLETeikdadgktvaAAAKVLVLGAGETTELEVKNPKLWSPETPNL 82
                          90       100
                  ....*....|....*....|....
gi 870811537  236 YELCVT-AKSQTEYDIYPLRVGIR 258
Cdd:pfam00703  83 YTLTVElDKDGKVIDEVSTRFGFR 106
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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