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Conserved domains on  [gi|926574207|gb|ALD49075|]
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NADH dehydrogenase subunit 1, partial (mitochondrion) [Zea mays]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NuoH super family cl42352
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 1-19 2.40e-03

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


The actual alignment was detected with superfamily member COG1005:

Pssm-ID: 440629  Cd Length: 329  Bit Score: 31.25  E-value: 2.40e-03
                         10
                 ....*....|....*....
gi 926574207   1 SSMGSALFFLGEYANMILM 19
Cdd:COG1005  228 SGMKFALFFLAEYANMFLV 246
 
Name Accession Description Interval E-value
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 1-19 2.40e-03

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 31.25  E-value: 2.40e-03
                         10
                 ....*....|....*....
gi 926574207   1 SSMGSALFFLGEYANMILM 19
Cdd:COG1005  228 SGMKFALFFLAEYANMFLV 246
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
1-19 5.14e-03

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 30.55  E-value: 5.14e-03
                         10
                 ....*....|....*....
gi 926574207   1 SSMGSALFFLGEYANMILM 19
Cdd:PRK06076 228 SGMKFGLFFLGEYINMILV 246
 
Name Accession Description Interval E-value
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 1-19 2.40e-03

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 31.25  E-value: 2.40e-03
                         10
                 ....*....|....*....
gi 926574207   1 SSMGSALFFLGEYANMILM 19
Cdd:COG1005  228 SGMKFALFFLAEYANMFLV 246
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
1-19 5.14e-03

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 30.55  E-value: 5.14e-03
                         10
                 ....*....|....*....
gi 926574207   1 SSMGSALFFLGEYANMILM 19
Cdd:PRK06076 228 SGMKFGLFFLGEYINMILV 246
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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