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Conserved domains on  [gi|937959190|gb|ALJ02615|]
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cytochrome b, partial (mitochondrion) [Alosa sapidissima]

Protein Classification

cytochrome b( domain architecture ID 1000003)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Symbol:  CYTB
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31802
cytochrome b; Provisional
 1-137 2.74e-110

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00131:

Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 317.36  E-value: 2.74e-110
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937959190   1 MASLRKTHPLMKIANDALVDLPAPSNISVWWNFGSLLGMCLAAQILTGLFLAMHYTSDIATAFSSVVHICRDVNYGWLIR 80
Cdd:MTH00131   1 MASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIR 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 937959190  81 SMHANGASFFFICIYAHIGRGLYYGSYVYKETWNIGVILLLLVMMTAFVGYVLPWGQ 137
Cdd:MTH00131  81 NLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQ 137
 
Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 1-137 2.74e-110

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 317.36  E-value: 2.74e-110
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937959190   1 MASLRKTHPLMKIANDALVDLPAPSNISVWWNFGSLLGMCLAAQILTGLFLAMHYTSDIATAFSSVVHICRDVNYGWLIR 80
Cdd:MTH00131   1 MASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIR 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 937959190  81 SMHANGASFFFICIYAHIGRGLYYGSYVYKETWNIGVILLLLVMMTAFVGYVLPWGQ 137
Cdd:MTH00131  81 NLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQ 137
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 9-137 1.36e-58

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 179.87  E-value: 1.36e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937959190   9 PLMKIANDALVDLPAPSNISVWWNFGSLLGMCLAAQILTGLFLAMHYTSDIATAFSSVVHICRDVNYGWLIRSMHANGAS 88
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 937959190  89 FFFICIYAHIGRGLYYGSYV--YKETWNIGVILLLLVMMTAFVGYVLPWGQ 137
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQ 131
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-137 3.44e-54

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 168.33  E-value: 3.44e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937959190   18 LVDLPAPSNISVWWNFGSLLGMCLAAQILTGLFLAMHYTSDIATAFSSVVHICRDVNYGWLIRSMHANGASFFFICIYAH 97
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 937959190   98 IGRGLYYGSYVY--KETWNIGVILLLLVMMTAFVGYVLPWGQ 137
Cdd:pfam00033  81 IFRGLYYGGFSYprELTWVIGVILLVLTMSTAFIGYVLPWGQ 122
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-137 7.06e-48

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 158.03  E-value: 7.06e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937959190   1 MASLRKTHPLMKIAND---------ALVDLPAPSNISVWWNFGSLLGMCLAAQILTGLFLAMHYTSDIATAFSSVVHICR 71
Cdd:COG1290    1 MSTTKKASGLADWLDErlplaslvrEHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMR 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937959190  72 DVNYGWLIRSMHANGASFFFICIYAHIGRGLYYGSyvYKE----TWNIGVILLLLVMMTAFVGYVLPWGQ 137
Cdd:COG1290   81 DVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGA--YKKprelNWIIGVLLLLLTMAEAFTGYSLPWDQ 148
 
Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 1-137 2.74e-110

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 317.36  E-value: 2.74e-110
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937959190   1 MASLRKTHPLMKIANDALVDLPAPSNISVWWNFGSLLGMCLAAQILTGLFLAMHYTSDIATAFSSVVHICRDVNYGWLIR 80
Cdd:MTH00131   1 MASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIR 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 937959190  81 SMHANGASFFFICIYAHIGRGLYYGSYVYKETWNIGVILLLLVMMTAFVGYVLPWGQ 137
Cdd:MTH00131  81 NLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQ 137
CYTB MTH00100
cytochrome b; Provisional
 1-137 1.11e-95

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 280.37  E-value: 1.11e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937959190   1 MASLRKTHPLMKIANDALVDLPAPSNISVWWNFGSLLGMCLAAQILTGLFLAMHYTSDIATAFSSVVHICRDVNYGWLIR 80
Cdd:MTH00100   1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 937959190  81 SMHANGASFFFICIYAHIGRGLYYGSYVYKETWNIGVILLLLVMMTAFVGYVLPWGQ 137
Cdd:MTH00100  81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQ 137
CYTB MTH00119
cytochrome b; Provisional
 4-137 4.61e-95

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 278.71  E-value: 4.61e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937959190   4 LRKTHPLMKIANDALVDLPAPSNISVWWNFGSLLGMCLAAQILTGLFLAMHYTSDIATAFSSVVHICRDVNYGWLIRSMH 83
Cdd:MTH00119   5 LRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLH 84

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 937959190  84 ANGASFFFICIYAHIGRGLYYGSYVYKETWNIGVILLLLVMMTAFVGYVLPWGQ 137
Cdd:MTH00119  85 ANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQ 138
CYTB MTH00074
cytochrome b; Provisional
 1-137 6.67e-93

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 273.09  E-value: 6.67e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937959190   1 MASLRKTHPLMKIANDALVDLPAPSNISVWWNFGSLLGMCLAAQILTGLFLAMHYTSDIATAFSSVVHICRDVNYGWLIR 80
Cdd:MTH00074   2 AHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMR 81

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 937959190  81 SMHANGASFFFICIYAHIGRGLYYGSYVYKETWNIGVILLLLVMMTAFVGYVLPWGQ 137
Cdd:MTH00074  82 NIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQ 138
CYTB MTH00191
cytochrome b; Provisional
 4-137 2.43e-92

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 271.40  E-value: 2.43e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937959190   4 LRKTHPLMKIANDALVDLPAPSNISVWWNFGSLLGMCLAAQILTGLFLAMHYTSDIATAFSSVVHICRDVNYGWLIRSMH 83
Cdd:MTH00191   1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 937959190  84 ANGASFFFICIYAHIGRGLYYGSYVYKETWNIGVILLLLVMMTAFVGYVLPWGQ 137
Cdd:MTH00191  81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQ 134
CYTB MTH00156
cytochrome b; Provisional
 11-137 1.63e-88

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 261.26  E-value: 1.63e-88
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937959190  11 MKIANDALVDLPAPSNISVWWNFGSLLGMCLAAQILTGLFLAMHYTSDIATAFSSVVHICRDVNYGWLIRSMHANGASFF 90
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 937959190  91 FICIYAHIGRGLYYGSYVYKETWNIGVILLLLVMMTAFVGYVLPWGQ 137
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQ 127
CYTB MTH00145
cytochrome b; Provisional
 1-137 3.86e-87

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 258.30  E-value: 3.86e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937959190   1 MASLRKTHPLMKIANDALVDLPAPSNISVWWNFGSLLGMCLAAQILTGLFLAMHYTSDIATAFSSVVHICRDVNYGWLIR 80
Cdd:MTH00145   2 LSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLR 81

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 937959190  81 SMHANGASFFFICIYAHIGRGLYYGSYVYKETWNIGVILLLLVMMTAFVGYVLPWGQ 137
Cdd:MTH00145  82 SLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQ 138
CYTB MTH00034
cytochrome b; Validated
 4-137 2.06e-86

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 256.56  E-value: 2.06e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937959190   4 LRKTHPLMKIANDALVDLPAPSNISVWWNFGSLLGMCLAAQILTGLFLAMHYTSDIATAFSSVVHICRDVNYGWLIRSMH 83
Cdd:MTH00034   4 LRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIH 83

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 937959190  84 ANGASFFFICIYAHIGRGLYYGSYVYKETWNIGVILLLLVMMTAFVGYVLPWGQ 137
Cdd:MTH00034  84 ANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQ 137
CYTB MTH00016
cytochrome b; Validated
 1-137 2.12e-80

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 241.12  E-value: 2.12e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937959190   1 MASLRKTHPLMKIANDALVDLPAPSNISVWWNFGSLLGMCLAAQILTGLFLAMHYTSDIATAFSSVVHICRDVNYGWLIR 80
Cdd:MTH00016   2 FSPMRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLR 81

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 937959190  81 SMHANGASFFFICIYAHIGRGLYYGSYVYKETWNIGVILLLLVMMTAFVGYVLPWGQ 137
Cdd:MTH00016  82 NLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQ 138
CYTB MTH00224
cytochrome b; Provisional
 4-137 2.70e-70

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 215.56  E-value: 2.70e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937959190   4 LRKTHPLMKIANDALVDLPAPSNISVWWNFGSLLGMCLAAQILTGLFLAMHYTSDIATAFSSVVHICRDVNYGWLIRSMH 83
Cdd:MTH00224   5 FRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIH 84

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 937959190  84 ANGASFFFICIYAHIGRGLYYGSYVYKETWNIGVILLLLVMMTAFVGYVLPWGQ 137
Cdd:MTH00224  85 ANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQ 138
CYTB MTH00022
cytochrome b; Validated
 4-137 4.83e-68

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 209.94  E-value: 4.83e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937959190   4 LRKTHPLMKIANDALVDLPAPSNISVWWNFGSLLGMCLAAQILTGLFLAMHYTSDIATAFSSVVHICRDVNYGWLIRSMH 83
Cdd:MTH00022   3 LRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLH 82

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 937959190  84 ANGASFFFICIYAHIGRGLYYGSYVYKETWNIGVILLLLVMMTAFVGYVLPWGQ 137
Cdd:MTH00022  83 ANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQ 136
CYTB MTH00053
cytochrome b; Provisional
 3-137 2.12e-62

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 195.31  E-value: 2.12e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937959190   3 SLRKTHPLMKIANDALVDLPAPSNISVWWNFGSLLGMCLAAQILTGLFLAMHYTSDIATAFSSVVHICRDVNYGWLIRSM 82
Cdd:MTH00053   4 TIRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYL 83

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 937959190  83 HANGASFFFICIYAHIGRGLYYGSYVYKETWNIGVILLLLVMMTAFVGYVLPWGQ 137
Cdd:MTH00053  84 HANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQ 138
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 9-137 1.36e-58

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 179.87  E-value: 1.36e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937959190   9 PLMKIANDALVDLPAPSNISVWWNFGSLLGMCLAAQILTGLFLAMHYTSDIATAFSSVVHICRDVNYGWLIRSMHANGAS 88
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 937959190  89 FFFICIYAHIGRGLYYGSYV--YKETWNIGVILLLLVMMTAFVGYVLPWGQ 137
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQ 131
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-137 3.44e-54

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 168.33  E-value: 3.44e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937959190   18 LVDLPAPSNISVWWNFGSLLGMCLAAQILTGLFLAMHYTSDIATAFSSVVHICRDVNYGWLIRSMHANGASFFFICIYAH 97
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 937959190   98 IGRGLYYGSYVY--KETWNIGVILLLLVMMTAFVGYVLPWGQ 137
Cdd:pfam00033  81 IFRGLYYGGFSYprELTWVIGVILLVLTMSTAFIGYVLPWGQ 122
CYTB MTH00033
cytochrome b; Provisional
 4-137 2.33e-52

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 169.73  E-value: 2.33e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937959190   4 LRKTHPLMKIanDALVDLPAPSNISVWWNFGSLLGMCLAAQILTGLFLAMHYTSDIATAFSSVVHICRDVNYGWLIRSMH 83
Cdd:MTH00033   3 LRKTGLLEPV--NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVH 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 937959190  84 ANGASFFFICIYAHIGRGLYYGSYVYKETWNIGVILLLLVMMTAFVGYVLPWGQ 137
Cdd:MTH00033  81 ANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQ 134
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-137 7.06e-48

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 158.03  E-value: 7.06e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937959190   1 MASLRKTHPLMKIAND---------ALVDLPAPSNISVWWNFGSLLGMCLAAQILTGLFLAMHYTSDIATAFSSVVHICR 71
Cdd:COG1290    1 MSTTKKASGLADWLDErlplaslvrEHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMR 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937959190  72 DVNYGWLIRSMHANGASFFFICIYAHIGRGLYYGSyvYKE----TWNIGVILLLLVMMTAFVGYVLPWGQ 137
Cdd:COG1290   81 DVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGA--YKKprelNWIIGVLLLLLTMAEAFTGYSLPWDQ 148
CYTB MTH00086
cytochrome b; Provisional
 15-137 8.60e-45

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 149.32  E-value: 8.60e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937959190  15 NDALVDLPAPSNISVWWNFGSLLGMCLAAQILTGLFLAMHYTSDIATAFSSVVHICRDVNYGWLIRSMHANGASFFFICI 94
Cdd:MTH00086   4 NSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFL 83

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 937959190  95 YAHIGRGLYYGSYVYKETWNIGVILLLLVMMTAFVGYVLPWGQ 137
Cdd:MTH00086  84 YLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQ 126
CYTB MTH00046
cytochrome b; Validated
 18-137 8.03e-30

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 110.07  E-value: 8.03e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937959190  18 LVDLPAPSNISVWWNFGSLLGMCLAAQILTGLFLAMHYTSDIATAFSSVVHICRDVNYGWLIRSMHANGASFFFICIYAH 97
Cdd:MTH00046   9 LIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIH 88

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 937959190  98 IGRGLYYGSYVYKETWNIGVILLLLVMMTAFVGYVLPWGQ 137
Cdd:MTH00046  89 MGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQ 128
PRK03735 PRK03735
cytochrome b6; Provisional
 22-137 4.80e-23

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 89.77  E-value: 4.80e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937959190  22 PAPSNISVWWNFGSLLGMCLAAQILTGLFLAMHYTSDIATAFSSVVHICRDVNYGWLIRSMHANGASFFFICIYAHIGRG 101
Cdd:PRK03735  33 PAHHFSAFVYCFGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRV 112

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 937959190 102 LYYGSYVYKE--TWNIGVILLLLVMMTAFVGYVLPWGQ 137
Cdd:PRK03735 113 FFTGGYKKPRelNWVVGVLIFFVTVGLGFTGYLLPWDQ 150
petB CHL00070
cytochrome b6
 24-137 5.40e-16

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 70.91  E-value: 5.40e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937959190  24 PSNISVWWNFGSLLGMCLAAQILTGLFLAMHYTSDIATAFSSVVHICRDVNYGWLIRSMHANGASFFFICIYAHIGRGLY 103
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 937959190 104 YGSYVYKE--TWNIGVILLLLVMMTAFVGYVLPWGQ 137
Cdd:CHL00070 107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQ 142
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
88-137 1.57e-12

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 61.10  E-value: 1.57e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 937959190   88 SFFFICIYAHIGRGLYYGSYVYKE--TWNIGVILLLLVMMTAFVGYVLPWGQ 137
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDL 52
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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