|
Name |
Accession |
Description |
Interval |
E-value |
| PRK05560 |
PRK05560 |
DNA gyrase subunit A; Validated |
1-235 |
0e+00 |
|
DNA gyrase subunit A; Validated
Pssm-ID: 235502 [Multi-domain] Cd Length: 805 Bit Score: 557.72 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944375116 1 YAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQDFSMRYMLV 80
Cdd:PRK05560 21 YAMSVIVGRALPDVRDGLKPVHRRILYAMNELGNTPDKPYKKSARIVGDVMGKYHPHGDSAVYDALVRMAQDFSMRYPLV 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944375116 81 DGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETVDWVPNYDGTEMIPAVMPTKVPTLLVNGSSGIAVGMATNIP 160
Cdd:PRK05560 101 DGQGNFGSIDGDPAAAMRYTEARMSKIAHELLADIDKETVDFVPNYDGSEQEPTVLPARFPNLLVNGSSGIAVGMATNIP 180
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 944375116 161 PHNLTEIVNGCLALIENGDLTIDELMTHVTGPDFPTGGIINGRSGIVQAYRTGRGSVYVRAKAEVEvdEKTSRET 235
Cdd:PRK05560 181 PHNLGEVIDACLALIDNPDITIEELMEIIPGPDFPTGGIILGRSGIREAYRTGRGSIVMRAKAEIE--EIKGREA 253
|
|
| GyrA |
COG0188 |
DNA gyrase/topoisomerase IV, subunit A [Replication, recombination and repair]; |
1-226 |
0e+00 |
|
DNA gyrase/topoisomerase IV, subunit A [Replication, recombination and repair];
Pssm-ID: 439958 [Multi-domain] Cd Length: 804 Bit Score: 548.10 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944375116 1 YAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQDFSMRYMLV 80
Cdd:COG0188 26 YAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDKPYKKSARVVGDVMGKYHPHGDSAVYDALVRMAQDFSMRYPLV 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944375116 81 DGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETVDWVPNYDGTEMIPAVMPTKVPTLLVNGSSGIAVGMATNIP 160
Cdd:COG0188 106 DGQGNFGSIDGDPAAAMRYTEARLAKIAEELLADIDKDTVDFVPNYDGSEQEPTVLPARFPNLLVNGSSGIAVGMATNIP 185
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 944375116 161 PHNLTEIVNGCLALIENGDLTIDELMTHVTGPDFPTGGIINGRSGIVQAYRTGRGSVYVRAKAEVE 226
Cdd:COG0188 186 PHNLGEVIDACIALIDNPDATIEELMEYIPGPDFPTGGIIVGREGIREAYETGRGSIRVRAKAEIE 251
|
|
| gyrA |
TIGR01063 |
DNA gyrase, A subunit; This model describes the common type II DNA topoisomerase (DNA gyrase). ... |
1-235 |
4.04e-168 |
|
DNA gyrase, A subunit; This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273423 [Multi-domain] Cd Length: 800 Bit Score: 483.35 E-value: 4.04e-168
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944375116 1 YAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQDFSMRYMLV 80
Cdd:TIGR01063 17 YAMSVIVSRALPDVRDGLKPVHRRILYAMYELGLTPDKPYKKSARIVGDVMGKYHPHGDSAIYDTLVRMAQDFSLRYPLV 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944375116 81 DGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETVDWVPNYDGTEMIPAVMPTKVPTLLVNGSSGIAVGMATNIP 160
Cdd:TIGR01063 97 DGQGNFGSIDGDPPAAMRYTEARLTKIAEELLRDIDKETVDFVPNYDGSEQEPTVLPSRFPNLLVNGSSGIAVGMATNIP 176
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 944375116 161 PHNLTEIVNGCLALIENGDLTIDELMTHVTGPDFPTGGIINGRSGIVQAYRTGRGSVYVRAKAEVEVDEKtSRET 235
Cdd:TIGR01063 177 PHNLGEIIDALLAYIDNPDISIQELLEVIKGPDFPTGGIILGRSGIRSAYETGRGSIVIRARAEIEEDSK-GREA 250
|
|
| TOP4c |
cd00187 |
DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), ... |
7-233 |
3.15e-153 |
|
DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Pssm-ID: 238111 [Multi-domain] Cd Length: 445 Bit Score: 433.15 E-value: 3.15e-153
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944375116 7 VGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQDFSMRYMLVDGQGNF 86
Cdd:cd00187 1 NGRALPDVRDGLKPVQRRILYAMFKRGLTPDKPEKKVARLVGDVAGKYHPHGDSSLYDTIVRMAQDFSNNIPLLDPQGNF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944375116 87 GSVDGDNAAAMRYTEVRMARISHELLADLDKETVDWVPNYDGTEMIPAVMPTKVPTLLVNGSSGIAVGMATNIPPHNLTE 166
Cdd:cd00187 81 GSRDGDDAAAMRYTETRLSPIARLLLPDIDDPTVDFVPNYDGQEVEPEVLPPIFPNLLVNGSSGIAVGMATNIPPHNLRE 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 944375116 167 IVNGCLALIENGDLTIDELMTHVTGPDFPTGGIINGRSGIVQAYRTGRGSVYVRAKAEVEVDEKTSR 233
Cdd:cd00187 161 VIDALRALIDNPEASIDELMEIIKGPDFPTGGIIEGRAGIREAYETGRGRYIIRGKYEIEDDEGRNT 227
|
|
| TOP4c |
smart00434 |
DNA Topoisomerase IV; Bacterial DNA topoisomerase IV, GyrA, ParC |
1-230 |
5.10e-141 |
|
DNA Topoisomerase IV; Bacterial DNA topoisomerase IV, GyrA, ParC
Pssm-ID: 214660 [Multi-domain] Cd Length: 444 Bit Score: 401.94 E-value: 5.10e-141
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944375116 1 YAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQDFSMRYMLV 80
Cdd:smart00434 14 YSMSVINGRAIPDVRDGLKPVQRRILYAMFKRGLTPDEPKVKSARGVGDVMGKYHPHGDSSLYDTIVRMAQDFSNNYPLL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944375116 81 DGQGNFGSV-DGDNAAAMRYTEVRMARISHELLADLDKETVDWVPNYDGTEMIPAVMPTKVPTLLVNGSSGIAVGMATNI 159
Cdd:smart00434 94 DGQGNFGSRlDGDDAAAMRYTETRLSPLARLLLPDIDKDTVDFVPNYDGQEIEPTVLPPIIPNLLVNGSSGIAVGMATNI 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 944375116 160 PPHNLTEIVNGCLALIENGDLTIDELMTHVTGPDFPTGGIINGRSGIVqayrtgrgsvyVRAKAEVEVDEK 230
Cdd:smart00434 174 PPHNLREVIDAVRRLIDNPDASIDELMMIPWGPDFPTGGEIVGPGKYV-----------VRGKIEIEDDNT 233
|
|
| DNA_topoisoIV |
pfam00521 |
DNA gyrase/topoisomerase IV, subunit A; |
9-226 |
8.00e-136 |
|
DNA gyrase/topoisomerase IV, subunit A;
Pssm-ID: 459843 [Multi-domain] Cd Length: 432 Bit Score: 388.45 E-value: 8.00e-136
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944375116 9 RALPDVRDGLKPVHRRVLYAMNELGNDwNKPYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQDFSMRYMLVDGQGNFGS 88
Cdd:pfam00521 1 RAIPDVRDGLKPVQRRILYAMFELLNL-DKPYKKVARLVGDVMGKYHPHGDASLYDAIVRMAQDFVGNIPLLDGQGNFGS 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944375116 89 V-DGDNAAAMRYTEVRMARISHELLADLDKETVDWVPNYDGTEMIPAVMPTKVPTLLVNGSSGIAVGMATNIPPHNLTEI 167
Cdd:pfam00521 80 RiDGDKDAAMRYTETRLSKIARELFPDIDDDTVDYVPNYDGTEVEPTVLPPIIPNLLVNGAEGIAVGMATNIPPHNLREI 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 944375116 168 VNGCLALIENGDLTIdeLMTHVTGPDFPTGGIINGRSGIVQAYRTGRGSVYVRAKAEVE 226
Cdd:pfam00521 160 IDALIALLDGPEATL--LMKYIMGPDFPTGGGIIGKGGIKEAYKTGRGKITVRAKVEIE 216
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK05560 |
PRK05560 |
DNA gyrase subunit A; Validated |
1-235 |
0e+00 |
|
DNA gyrase subunit A; Validated
Pssm-ID: 235502 [Multi-domain] Cd Length: 805 Bit Score: 557.72 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944375116 1 YAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQDFSMRYMLV 80
Cdd:PRK05560 21 YAMSVIVGRALPDVRDGLKPVHRRILYAMNELGNTPDKPYKKSARIVGDVMGKYHPHGDSAVYDALVRMAQDFSMRYPLV 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944375116 81 DGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETVDWVPNYDGTEMIPAVMPTKVPTLLVNGSSGIAVGMATNIP 160
Cdd:PRK05560 101 DGQGNFGSIDGDPAAAMRYTEARMSKIAHELLADIDKETVDFVPNYDGSEQEPTVLPARFPNLLVNGSSGIAVGMATNIP 180
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 944375116 161 PHNLTEIVNGCLALIENGDLTIDELMTHVTGPDFPTGGIINGRSGIVQAYRTGRGSVYVRAKAEVEvdEKTSRET 235
Cdd:PRK05560 181 PHNLGEVIDACLALIDNPDITIEELMEIIPGPDFPTGGIILGRSGIREAYRTGRGSIVMRAKAEIE--EIKGREA 253
|
|
| GyrA |
COG0188 |
DNA gyrase/topoisomerase IV, subunit A [Replication, recombination and repair]; |
1-226 |
0e+00 |
|
DNA gyrase/topoisomerase IV, subunit A [Replication, recombination and repair];
Pssm-ID: 439958 [Multi-domain] Cd Length: 804 Bit Score: 548.10 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944375116 1 YAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQDFSMRYMLV 80
Cdd:COG0188 26 YAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDKPYKKSARVVGDVMGKYHPHGDSAVYDALVRMAQDFSMRYPLV 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944375116 81 DGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETVDWVPNYDGTEMIPAVMPTKVPTLLVNGSSGIAVGMATNIP 160
Cdd:COG0188 106 DGQGNFGSIDGDPAAAMRYTEARLAKIAEELLADIDKDTVDFVPNYDGSEQEPTVLPARFPNLLVNGSSGIAVGMATNIP 185
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 944375116 161 PHNLTEIVNGCLALIENGDLTIDELMTHVTGPDFPTGGIINGRSGIVQAYRTGRGSVYVRAKAEVE 226
Cdd:COG0188 186 PHNLGEVIDACIALIDNPDATIEELMEYIPGPDFPTGGIIVGREGIREAYETGRGSIRVRAKAEIE 251
|
|
| gyrA |
TIGR01063 |
DNA gyrase, A subunit; This model describes the common type II DNA topoisomerase (DNA gyrase). ... |
1-235 |
4.04e-168 |
|
DNA gyrase, A subunit; This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273423 [Multi-domain] Cd Length: 800 Bit Score: 483.35 E-value: 4.04e-168
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944375116 1 YAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQDFSMRYMLV 80
Cdd:TIGR01063 17 YAMSVIVSRALPDVRDGLKPVHRRILYAMYELGLTPDKPYKKSARIVGDVMGKYHPHGDSAIYDTLVRMAQDFSLRYPLV 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944375116 81 DGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETVDWVPNYDGTEMIPAVMPTKVPTLLVNGSSGIAVGMATNIP 160
Cdd:TIGR01063 97 DGQGNFGSIDGDPPAAMRYTEARLTKIAEELLRDIDKETVDFVPNYDGSEQEPTVLPSRFPNLLVNGSSGIAVGMATNIP 176
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 944375116 161 PHNLTEIVNGCLALIENGDLTIDELMTHVTGPDFPTGGIINGRSGIVQAYRTGRGSVYVRAKAEVEVDEKtSRET 235
Cdd:TIGR01063 177 PHNLGEIIDALLAYIDNPDISIQELLEVIKGPDFPTGGIILGRSGIRSAYETGRGSIVIRARAEIEEDSK-GREA 250
|
|
| PRK05561 |
PRK05561 |
DNA topoisomerase 4 subunit A; |
1-226 |
5.00e-164 |
|
DNA topoisomerase 4 subunit A;
Pssm-ID: 235503 [Multi-domain] Cd Length: 742 Bit Score: 470.74 E-value: 5.00e-164
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944375116 1 YAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQDFSMRYMLV 80
Cdd:PRK05561 26 YAMYVIMDRALPDVRDGLKPVQRRILYAMSELGLTPDAKFKKSARVVGDVLGKYHPHGDSSIYDAMVRMAQDFSYRYPLV 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944375116 81 DGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETVDWVPNYDGTEMIPAVMPTKVPTLLVNGSSGIAVGMATNIP 160
Cdd:PRK05561 106 DGQGNFGSIDGDPAAAMRYTEARLSPIAELLLEEIDEGTVDFVPNFDGTLKEPTVLPARFPNLLLNGATGIAVGMATDIP 185
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 944375116 161 PHNLTEIVNGCLALIENGDLTIDELMTHVTGPDFPTGG-IINGRSGIVQAYRTGRGSVYVRAKAEVE 226
Cdd:PRK05561 186 PHNLREVIDAAIHLIDNPDATLEELMEFVPGPDFPTGGeIITGRDGIRKAYETGRGSIRVRARWEIE 252
|
|
| TOP4c |
cd00187 |
DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), ... |
7-233 |
3.15e-153 |
|
DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Pssm-ID: 238111 [Multi-domain] Cd Length: 445 Bit Score: 433.15 E-value: 3.15e-153
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944375116 7 VGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQDFSMRYMLVDGQGNF 86
Cdd:cd00187 1 NGRALPDVRDGLKPVQRRILYAMFKRGLTPDKPEKKVARLVGDVAGKYHPHGDSSLYDTIVRMAQDFSNNIPLLDPQGNF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944375116 87 GSVDGDNAAAMRYTEVRMARISHELLADLDKETVDWVPNYDGTEMIPAVMPTKVPTLLVNGSSGIAVGMATNIPPHNLTE 166
Cdd:cd00187 81 GSRDGDDAAAMRYTETRLSPIARLLLPDIDDPTVDFVPNYDGQEVEPEVLPPIFPNLLVNGSSGIAVGMATNIPPHNLRE 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 944375116 167 IVNGCLALIENGDLTIDELMTHVTGPDFPTGGIINGRSGIVQAYRTGRGSVYVRAKAEVEVDEKTSR 233
Cdd:cd00187 161 VIDALRALIDNPEASIDELMEIIKGPDFPTGGIIEGRAGIREAYETGRGRYIIRGKYEIEDDEGRNT 227
|
|
| TOP4c |
smart00434 |
DNA Topoisomerase IV; Bacterial DNA topoisomerase IV, GyrA, ParC |
1-230 |
5.10e-141 |
|
DNA Topoisomerase IV; Bacterial DNA topoisomerase IV, GyrA, ParC
Pssm-ID: 214660 [Multi-domain] Cd Length: 444 Bit Score: 401.94 E-value: 5.10e-141
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944375116 1 YAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQDFSMRYMLV 80
Cdd:smart00434 14 YSMSVINGRAIPDVRDGLKPVQRRILYAMFKRGLTPDEPKVKSARGVGDVMGKYHPHGDSSLYDTIVRMAQDFSNNYPLL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944375116 81 DGQGNFGSV-DGDNAAAMRYTEVRMARISHELLADLDKETVDWVPNYDGTEMIPAVMPTKVPTLLVNGSSGIAVGMATNI 159
Cdd:smart00434 94 DGQGNFGSRlDGDDAAAMRYTETRLSPLARLLLPDIDKDTVDFVPNYDGQEIEPTVLPPIIPNLLVNGSSGIAVGMATNI 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 944375116 160 PPHNLTEIVNGCLALIENGDLTIDELMTHVTGPDFPTGGIINGRSGIVqayrtgrgsvyVRAKAEVEVDEK 230
Cdd:smart00434 174 PPHNLREVIDAVRRLIDNPDASIDELMMIPWGPDFPTGGEIVGPGKYV-----------VRGKIEIEDDNT 233
|
|
| DNA_topoisoIV |
pfam00521 |
DNA gyrase/topoisomerase IV, subunit A; |
9-226 |
8.00e-136 |
|
DNA gyrase/topoisomerase IV, subunit A;
Pssm-ID: 459843 [Multi-domain] Cd Length: 432 Bit Score: 388.45 E-value: 8.00e-136
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944375116 9 RALPDVRDGLKPVHRRVLYAMNELGNDwNKPYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQDFSMRYMLVDGQGNFGS 88
Cdd:pfam00521 1 RAIPDVRDGLKPVQRRILYAMFELLNL-DKPYKKVARLVGDVMGKYHPHGDASLYDAIVRMAQDFVGNIPLLDGQGNFGS 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944375116 89 V-DGDNAAAMRYTEVRMARISHELLADLDKETVDWVPNYDGTEMIPAVMPTKVPTLLVNGSSGIAVGMATNIPPHNLTEI 167
Cdd:pfam00521 80 RiDGDKDAAMRYTETRLSKIARELFPDIDDDTVDYVPNYDGTEVEPTVLPPIIPNLLVNGAEGIAVGMATNIPPHNLREI 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 944375116 168 VNGCLALIENGDLTIdeLMTHVTGPDFPTGGIINGRSGIVQAYRTGRGSVYVRAKAEVE 226
Cdd:pfam00521 160 IDALIALLDGPEATL--LMKYIMGPDFPTGGGIIGKGGIKEAYKTGRGKITVRAKVEIE 216
|
|
| PRK13979 |
PRK13979 |
DNA topoisomerase IV subunit A; Provisional |
1-226 |
6.19e-115 |
|
DNA topoisomerase IV subunit A; Provisional
Pssm-ID: 237576 [Multi-domain] Cd Length: 957 Bit Score: 350.56 E-value: 6.19e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944375116 1 YAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQDFSMRYMLV 80
Cdd:PRK13979 29 YAVEVAKDRALPDVRDGLKPVHRRILYGAYMLKAFPDKPYYKSARIVGDILGKYHPHGDSSVYDAMVILAQDFTTRMPLI 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944375116 81 DGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETVDWVPNYDGTEMIPAVMPTKVPTLLVNGSSGIAVGMATNIP 160
Cdd:PRK13979 109 DGHGNWGSIDGDSAAAMRYTEARLTPIAMEMLRDIDKDVVNMVDNYSDSEKEPEVLPARYPNLLVNGAFGIAVGLATNIP 188
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 944375116 161 PHNLTEIVNGCLALIENGDLTIDELMTHVTGPDFPTGGIINGRSGIVQAYRTGRGSVYVRAKAEVE 226
Cdd:PRK13979 189 PHNLKEVIDGTLAYIDNNEITTKELMNYIKGPDLPTGGILIGKKSLLSAYETGEGKVTLRAKTKIE 254
|
|
| parC_Gneg |
TIGR01062 |
DNA topoisomerase IV, A subunit, proteobacterial; Operationally, topoisomerase IV is a type II ... |
1-226 |
8.05e-113 |
|
DNA topoisomerase IV, A subunit, proteobacterial; Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 130134 [Multi-domain] Cd Length: 735 Bit Score: 339.58 E-value: 8.05e-113
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944375116 1 YAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQDFSMRYMLV 80
Cdd:TIGR01062 17 YSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNANAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLV 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944375116 81 DGQGNFGSVDG-DNAAAMRYTEVRMARISHELLADLDKETVDWVPNYDGTEMIPAVMPTKVPTLLVNGSSGIAVGMATNI 159
Cdd:TIGR01062 97 DGQGNWGAPDDpKSFAAMRYTESRLSKISELLLEELGQGTVDFRPNFDGTLLEPVILPARLPNILLNGTTGIAVGMATDI 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 944375116 160 PPHNLTEIVNGCLALIENGDLTIDELMTHVTGPDFPTGG-IINGRSGIVQAYRTGRGSVYVRAKAEVE 226
Cdd:TIGR01062 177 PPHNLHELADAALYLIDNPKAGLDDILNIVQGPDFPTEAeIIDKAEEIRKIYETGRGSFRMRARWKKE 244
|
|
| parC_Gpos |
TIGR01061 |
DNA topoisomerase IV, A subunit, Gram-positive; Operationally, topoisomerase IV is a type II ... |
1-227 |
2.59e-106 |
|
DNA topoisomerase IV, A subunit, Gram-positive; Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273422 [Multi-domain] Cd Length: 738 Bit Score: 322.52 E-value: 2.59e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944375116 1 YAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQDFSMRYMLV 80
Cdd:TIGR01061 17 YAKYIIQDRALPDIRDGLKPVQRRILYAMFQDGNTFDKPYKKSARTVGEIMGKYHPHGDSSIYDAMVRMSQDWKNNWTLV 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944375116 81 DGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETVDWVPNYDGTEMIPAVMPTKVPTLLVNGSSGIAVGMATNIP 160
Cdd:TIGR01061 97 EMHGNNGSIDGDNAAAMRYTEARLSLIASELLKDIDKKTVSFIPNFDDSEKEPTVLPALFPNLLINGATGIAAGYATNIP 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 944375116 161 PHNLTEIVNGCLALIENGDLTIDELMTHVTGPDFPTGGIINGRSGIVQAYRTGRGSVYVRAKAEVEV 227
Cdd:TIGR01061 177 PHNLNEVIDALIYRIDHPNCSVDKLMEIVKGPDFPTGGIIQGEDGISKAYETGKGKFIIRAKIEIEV 243
|
|
| PRK09631 |
PRK09631 |
DNA topoisomerase IV subunit A; Provisional |
1-231 |
2.06e-60 |
|
DNA topoisomerase IV subunit A; Provisional
Pssm-ID: 236598 [Multi-domain] Cd Length: 635 Bit Score: 200.32 E-value: 2.06e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944375116 1 YAMSVIVGRALPDVRDGLKPVHRRVLYAMNELgNDWNkpYKKSARVVGDVIgKYHPHGDIAVYDTIVRMA-QDFsmrymL 79
Cdd:PRK09631 15 YASYVIKDRAIPDVIDGLKPVQRRILHSLFEM-HDGK--FHKVANVVGNTM-KYHPHGDASIYEALVNLAnKDL-----F 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944375116 80 VDGQGNFGSV-DGDNAAAMRYTEVRMARISHELLadLDKETVDWVPNYDGTEMIPAVMPTKVPTLLVNGSSGIAVGMATN 158
Cdd:PRK09631 86 IDKQGNFGNLfTGDPASAARYIECRLTPLAKEVL--YNKEITEYEPSYDGRNNEPLCLPAKIPVILIQGAEGIAVGMATK 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 944375116 159 IPPHNLTEIVNGCLALIENGDLTIdelmthvtGPDFPTGGIINgrsgiVQAYRTGRGSVYVRAKAEvEVDEKT 231
Cdd:PRK09631 164 ILPHNFNEILQAVKSELLGESFAL--------YPDFPTGGIVD-----VSEYADGNGKVLVRAKIE-TKDEKT 222
|
|
| PRK12758 |
PRK12758 |
DNA gyrase/topoisomerase IV subunit A; |
1-231 |
6.09e-56 |
|
DNA gyrase/topoisomerase IV subunit A;
Pssm-ID: 237192 [Multi-domain] Cd Length: 869 Bit Score: 190.99 E-value: 6.09e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944375116 1 YAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDwnkPYKKSARVVGDVIgKYHPHGDIAVYDTIVRMAQdfsmRYMLV 80
Cdd:PRK12758 34 YASYVILERAVPHIEDGLKPVQRRILHSMKEMDDG---RYNKVANVVGHTM-QYHPHGDASIGDALVQLGQ----KDLLI 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944375116 81 DGQGNFGSV-DGDNAAAMRYTEVRMARISHELLadLDKETVDWVPNYDGTEMIPAVMPTKVPTLLVNGSSGIAVGMATNI 159
Cdd:PRK12758 106 DTQGNWGNIlTGDGAAAPRYIEARLSKFALEVV--FNPKTTEWQLSYDGRKKEPVTLPVKFPLLLAQGAEGIAVGLSTKI 183
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 944375116 160 PPHNLTEIVNGCLALIENGDLTIdelmthvtGPDFPTGGIINgrsgiVQAYRTGR--GSVYVRAKAEvEVDEKT 231
Cdd:PRK12758 184 LPHNFNELIDASIAYLKGKEFKL--------YPDFPTGGIID-----VSNYNDGErgGRVRVRAKIE-KLDKKT 243
|
|
| PRK09630 |
PRK09630 |
DNA topoisomerase IV subunit A; Provisional |
1-231 |
2.44e-42 |
|
DNA topoisomerase IV subunit A; Provisional
Pssm-ID: 170022 Cd Length: 479 Bit Score: 149.27 E-value: 2.44e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944375116 1 YAMSVIVGRALPDVRDGLKPVHRRVLYAMNELgnDWNKPYKksarvVGDVIGK---YHPHGDIAVYDTIVRMAQdfsmRY 77
Cdd:PRK09630 15 YASYVILERAIPHILDGLKPVQRRLLWTLFRM--DDGKMHK-----VANIAGRtmaLHPHGDAPIVEALVVLAN----KG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944375116 78 MLVDGQGNFGS-VDGDNAAAMRYTEVRMARISHELLADLDkeTVDWVPNYDGTEMIPAVMPTKVPTLLVNGSSGIAVGMA 156
Cdd:PRK09630 84 YLIDTQGNFGNpLTGDPHAAARYIEARLSPLAKEVLFNTD--LMTFHDSYDGREKEPDILPAKLPLLLLHGVDGIAVGMT 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 944375116 157 TNIPPHNLTEIVNGCLALIENGDLTIdelmthvtGPDFPTGGIINGRSgivqaYRTGRGSVYVRAKAEVeVDEKT 231
Cdd:PRK09630 162 TKIFPHNFCELLEAQIAILNDQPFTL--------LPDFPSGGTMDASE-----YQDGLGSITLRASIDI-INDKT 222
|
|
| 52 |
PHA02592 |
DNA topisomerase II medium subunit; Provisional |
1-224 |
4.86e-38 |
|
DNA topisomerase II medium subunit; Provisional
Pssm-ID: 222896 [Multi-domain] Cd Length: 439 Bit Score: 137.11 E-value: 4.86e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944375116 1 YAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDV--IGkYHpHGDIAVYDTIVRMAQDFSMRYM 78
Cdd:PHA02592 19 YAMYTVEERAIPNLIDGLKPVQRFVIHRALEYAKGNKEKFDKVAAIAGGVadLG-YH-HGETSAQDAGALMANTWNNNIP 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944375116 79 LVDGQGNFGSVDGDNAAAMRYTEVRMarisHELLADLDKETvDWVPNYDGTEMIPAV--MPTkVPTLLVNGSSGIAVGMA 156
Cdd:PHA02592 97 LLDGQGNFGSRLVQKAAAARYIFARV----HDNFRKIYKDE-DLAPVHEDPEHIPPAfyLPI-IPMVLLNGVSGIATGYA 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 944375116 157 TNIPPHNLTEIVNGCLALIENGDltIDELMthvtgPDFPtggiinGRSGIVQayRTGRGSVYVRAKAE 224
Cdd:PHA02592 171 TNILPHSPKSVIKAVLAALNGKD--ITEPK-----VQFP------EFKGEVV--EIEPGSYEIRGTYE 223
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
9-181 |
2.66e-24 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 100.89 E-value: 2.66e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944375116 9 RALPDVRDGLKPVHRRVLYAM------NELgndwnkpykKSARVVGDVIGK--YHpHGDIAVYDTIVRMAQDF----SMR 76
Cdd:PTZ00108 680 RSIPSLVDGLKPGQRKILFACfkrnlkNEI---------KVAQLSGYVSEHsaYH-HGEQSLQQTIVGMAQNFvgsnNIN 749
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944375116 77 YMLVDGQgnFGS--VDGDNAAAMRYTEVRMARISHELLADLDKETVDWVpNYDGTEMIPA-VMPTkVPTLLVNGSSGIAV 153
Cdd:PTZ00108 750 LLYPCGQ--FGSrlQGGKDHAAARYIFTKLSKITRYIFPEEDDPILDYL-EDDGQSVEPFyYVPI-IPMVLVNGAEGIGT 825
|
170 180
....*....|....*....|....*...
gi 944375116 154 GMATNIPPHNLTEIVNGCLALIENGDLT 181
Cdd:PTZ00108 826 GFSTSIPNYNPLDIIDNLRRRLNGEEVR 853
|
|
| PLN03128 |
PLN03128 |
DNA topoisomerase 2; Provisional |
9-181 |
1.76e-22 |
|
DNA topoisomerase 2; Provisional
Pssm-ID: 215593 [Multi-domain] Cd Length: 1135 Bit Score: 95.55 E-value: 1.76e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944375116 9 RALPDVRDGLKPVHRRVLYAMneLGNDWnKPYKKSARVVGDVI--GKYHpHGDIAVYDTIVRMAQDF--SMRYMLVDGQG 84
Cdd:PLN03128 673 RSIPSMVDGLKPSQRKVLFAC--FKRNL-KSEIKVAQLSGYVAehSAYH-HGEASLASTIIGMAQDFvgSNNINLLTPSG 748
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944375116 85 NFGS--VDGDNAAAMRYTEVRMARISHELLADLDKETVDWVpNYDGTEMIPA-VMPTkVPTLLVNGSSGIAVGMATNIPP 161
Cdd:PLN03128 749 QFGTrlQGGKDAASARYIFTRLSPITRALFPKDDDVLLNYL-NEDGQSIEPEwYCPI-IPMVLVNGSEGIGTGWSTFIPN 826
|
170 180
....*....|....*....|
gi 944375116 162 HNLTEIVNGCLALIENGDLT 181
Cdd:PLN03128 827 YNPRDIIANIRRLLRGEELE 846
|
|
| PLN03237 |
PLN03237 |
DNA topoisomerase 2; Provisional |
9-168 |
1.61e-19 |
|
DNA topoisomerase 2; Provisional
Pssm-ID: 215641 [Multi-domain] Cd Length: 1465 Bit Score: 86.84 E-value: 1.61e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944375116 9 RALPDVRDGLKPVHRRVLYAmnelgnDWNKPYKKSARV---VGDV--IGKYHpHGDIAVYDTIVRMAQDF--SMRYMLVD 81
Cdd:PLN03237 698 RSIPSMVDGLKPGQRKILFC------SFKRNFVKEAKVaqlSGYVseHSAYH-HGEQSLASTIIGMAQDFvgSNNINLLL 770
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 944375116 82 GQGNFG--SVDGDNAAAMRYTEVRMARISHELLADLDKETVDWVpNYDGTEMIPA-VMPTkVPTLLVNGSSGIAVGMATN 158
Cdd:PLN03237 771 PNGQFGtrLQGGKDHASARYIFTRLSPITRFLFPKDDDILLDYL-NEDGQSIEPTwYMPI-IPTVLVNGAEGIGTGWSTF 848
|
170
....*....|
gi 944375116 159 IPPHNLTEIV 168
Cdd:PLN03237 849 IPNYNPRDIV 858
|
|
|