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Conserved domains on  [gi|953067759|gb|ALO51611|]
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PsaA, partial (chloroplast) [Ballia sp. GWS-2015a]

Protein Classification

photosystem I psaA/psaB family protein( domain architecture ID 954)

photosystem I psaA/psaB family protein may bind P700, the primary electron donor of PSI, which is a plastocyanin-ferredoxin oxidoreductase essential for light-driven electron transport, as well as the electron acceptors A0, A1 and FX

EC:  1.97.1.12
Gene Ontology:  GO:0016020|GO:0009522|GO:0015979|GO:0016168
PubMed:  15573135
SCOP:  3000850
TCDB:  5.B.4

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
psaB super family cl08224
photosystem I P700 chlorophyll a apoprotein A2
 1-522 0e+00

photosystem I P700 chlorophyll a apoprotein A2


The actual alignment was detected with superfamily member CHL00056:

Pssm-ID: 471792  Cd Length: 750  Bit Score: 1065.90  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759   1 LHADAHDFDSHTSSLEEVSRKIFSAHFGQLSIIFLWLSGMYFHGARFSNYVAWLNDPTVIKPSAQVVWPIVGQEVLNGDV 80
Cdd:CHL00056  49 LHADAHDFDSHTSDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSDPTHIKPSAQVVWPIVGQEILNGDV 128

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759  81 GGGFQGIQVTSGWFQLWRASGITNENELYATAIGGLLMSVLMICAGWFHYHKASPKLEWFQNVESMMNHHLAGLLGLGCL 160
Cdd:CHL00056 129 GGGFRGIQITSGFFQIWRASGITSELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSL 208

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 161 GWAGHQVHISLPINKLLDAGISAQEIPLPHEFLINKDLMVQLYPSFAKGILPFFTLDWGVYSDFLTFKGGLNPVTGGLWL 240
Cdd:CHL00056 209 SWAGHQIHVSLPINQLLDAGVDPKEIPLPHEFILNRDLLAQLYPSFAKGLTPFFTLNWSEYSDFLTFRGGLNPVTGGLWL 288

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 241 SDTAHHHLALATLFLIAGHMYRTNWGIGHSMKEILEGHKGPFTGEGHKGLYEILTTSWHAQLAINLAMMGSLSIIVAHHM 320
Cdd:CHL00056 289 TDIAHHHLAIAVLFLIAGHMYRTNWGIGHSLKEILEAHKGPFTGEGHKGLYEILTTSWHAQLALNLAMLGSLTIIVAHHM 368

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 321 YAMPAYPFIATDYPTQLSLFTHHMWIGGFCIVGAGAHASIFMVRDYNPAQNYNNLLDRVIRHRDAIISHLNWVCIFLGFH 400
Cdd:CHL00056 369 YSMPPYPYLATDYGTQLSLFTHHMWIGGFLIVGAAAHAAIFMVRDYDPTTRYNNLLDRVLRHRDAIISHLNWVCIFLGFH 448

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 401 SFGLYIHNDTMRALGRSQDMFSDTAIQLQPIFAQWIQNIHTLAPGNTAPNALTTTSYAFGG-DLISVSNKVAMMPISLGT 479
Cdd:CHL00056 449 SFGLYIHNDTMSALGRPQDMFSDTAIQLQPIFAQWIQNTHALAPGATAPGATASTSLTWGGgDLVAVGGKVALLPIPLGT 528

                        490       500       510       520
                 ....*....|....*....|....*....|....*....|...
gi 953067759 480 ADFMVHHIHAFTIHVTVLILVKGFLFSRNSRLIPDKSNLGFRF 522
Cdd:CHL00056 529 ADFLVHHIHAFTIHVTVLILLKGVLFARSSRLIPDKANLGFRF 571
 
Name Accession Description Interval E-value
psaA CHL00056
photosystem I P700 chlorophyll a apoprotein A1
 1-522 0e+00

photosystem I P700 chlorophyll a apoprotein A1


Pssm-ID: 176996  Cd Length: 750  Bit Score: 1065.90  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759   1 LHADAHDFDSHTSSLEEVSRKIFSAHFGQLSIIFLWLSGMYFHGARFSNYVAWLNDPTVIKPSAQVVWPIVGQEVLNGDV 80
Cdd:CHL00056  49 LHADAHDFDSHTSDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSDPTHIKPSAQVVWPIVGQEILNGDV 128

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759  81 GGGFQGIQVTSGWFQLWRASGITNENELYATAIGGLLMSVLMICAGWFHYHKASPKLEWFQNVESMMNHHLAGLLGLGCL 160
Cdd:CHL00056 129 GGGFRGIQITSGFFQIWRASGITSELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSL 208

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 161 GWAGHQVHISLPINKLLDAGISAQEIPLPHEFLINKDLMVQLYPSFAKGILPFFTLDWGVYSDFLTFKGGLNPVTGGLWL 240
Cdd:CHL00056 209 SWAGHQIHVSLPINQLLDAGVDPKEIPLPHEFILNRDLLAQLYPSFAKGLTPFFTLNWSEYSDFLTFRGGLNPVTGGLWL 288

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 241 SDTAHHHLALATLFLIAGHMYRTNWGIGHSMKEILEGHKGPFTGEGHKGLYEILTTSWHAQLAINLAMMGSLSIIVAHHM 320
Cdd:CHL00056 289 TDIAHHHLAIAVLFLIAGHMYRTNWGIGHSLKEILEAHKGPFTGEGHKGLYEILTTSWHAQLALNLAMLGSLTIIVAHHM 368

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 321 YAMPAYPFIATDYPTQLSLFTHHMWIGGFCIVGAGAHASIFMVRDYNPAQNYNNLLDRVIRHRDAIISHLNWVCIFLGFH 400
Cdd:CHL00056 369 YSMPPYPYLATDYGTQLSLFTHHMWIGGFLIVGAAAHAAIFMVRDYDPTTRYNNLLDRVLRHRDAIISHLNWVCIFLGFH 448

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 401 SFGLYIHNDTMRALGRSQDMFSDTAIQLQPIFAQWIQNIHTLAPGNTAPNALTTTSYAFGG-DLISVSNKVAMMPISLGT 479
Cdd:CHL00056 449 SFGLYIHNDTMSALGRPQDMFSDTAIQLQPIFAQWIQNTHALAPGATAPGATASTSLTWGGgDLVAVGGKVALLPIPLGT 528

                        490       500       510       520
                 ....*....|....*....|....*....|....*....|...
gi 953067759 480 ADFMVHHIHAFTIHVTVLILVKGFLFSRNSRLIPDKSNLGFRF 522
Cdd:CHL00056 529 ADFLVHHIHAFTIHVTVLILLKGVLFARSSRLIPDKANLGFRF 571
psaA TIGR01335
photosystem I core protein PsaA; The core proteins of photosystem I are PsaA and PsaB, ...
 1-522 0e+00

photosystem I core protein PsaA; The core proteins of photosystem I are PsaA and PsaB, homologous integral membrane proteins that form a heterodimer. The heterodimer binds the electron-donating chlorophyll dimer P700, as well as chlorophyll, phylloquinone, and 4FE-4S electron acceptors. This model describes PsaA only. [Energy metabolism, Photosynthesis]


Pssm-ID: 130402 [Multi-domain]  Cd Length: 752  Bit Score: 968.66  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759    1 LHADAHDFDSHTSSLEEVSRKIFSAHFGQLSIIFLWLSGMYFHGARFSNYVAWLNDPTVIKPSAQVVWPIVGQEVLNGDV 80
Cdd:TIGR01335  52 LHADAHDFDSHTSDLEDISRKIFSAHFGQLSVIFIWLSGMYFHGARFSNYEAWLSDPTHIKPSAQVVWPIVGQEILNGDV 131

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759   81 GGGFQGIQVTSGWFQLWRASGITNENELYATAIGGLLMSVLMICAGWFHYHKASPKLEWFQNVESMMNHHLAGLLGLGCL 160
Cdd:TIGR01335 132 GGGFHGIQITSGFFQLWRASGITNELQLYVTAIGGLVMAGLMLFAGWFHYHKAAPKLEWFQNVESMLNHHLAGLLGLGSL 211

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759  161 GWAGHQVHISLPINKLLDAGISAQEIPLPHEFLINKDLMVQLYPSFAKGILPFFTLDWGVYSDFLTFKGGLNPVTGGLWL 240
Cdd:TIGR01335 212 SWAGHQIHVSLPINKLLDAGVDPKDIPLPHEFILNRELMAQLYPSFASGLTPFFTLNWGAYSDFLTFRGGLNPVTGGLWL 291

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759  241 SDTAHHHLALATLFLIAGHMYRTNWGIGHSMKEILEGHKGPFTGEGHKGLYEILTTSWHAQLAINLAMMGSLSIIVAHHM 320
Cdd:TIGR01335 292 SDIAHHHLAIAVLFIIAGHMYRTNWGIGHSIKEILEAHKGPFTGSGHKGLYEALTTSWHAQLAINLAMLGSLSIIVAHHM 371

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759  321 YAMPAYPFIATDYPTQLSLFTHHMWIGGFCIVGAGAHASIFMVRDYNPAQNYNNLLDRVIRHRDAIISHLNWVCIFLGFH 400
Cdd:TIGR01335 372 YAMPPYPYLATDYPTQLSLFTHHMWIGGFLIVGAAAHGAIFMVRDYDPSQNYNNVLDRVIRHRDAIISHLNWVCIFLGFH 451

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759  401 SFGLYIHNDTMRALGRSQDMFSDTAIQLQPIFAQWIQNIHTLAPGNTAPNALTTTSYAFGGDLISVSNKVAMMPISLGTA 480
Cdd:TIGR01335 452 SFGLYIHNDTMRALGRPQDMFSDTAIQLQPVFAQWIQNLHTLAPGNTAPNALATTSYAFGGEVVAVGGKVAMMPIKLGTA 531

                         490       500       510       520
                  ....*....|....*....|....*....|....*....|..
gi 953067759  481 DFMVHHIHAFTIHVTVLILVKGFLFSRNSRLIPDKSNLGFRF 522
Cdd:TIGR01335 532 DFMVHHIHAFTIHVTVLILLKGVLFARNSRLIPDKANLGFRF 573
PsaA COG5701
Photosystem I reaction center subunit A1, PsaA [Energy production and conversion]; Photosystem ...
 1-522 0e+00

Photosystem I reaction center subunit A1, PsaA [Energy production and conversion]; Photosystem I reaction center subunit A1, PsaA is part of the Pathway/BioSystem: Photosystem I


Pssm-ID: 444411  Cd Length: 755  Bit Score: 923.47  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759   1 LHADAHDFDSHTSSLEEVSRKIFSAHFGQLSIIFLWLSGMYFHGARFSNYVAWLNDPTVIKPSAQVVWPIVGQEVLNGDV 80
Cdd:COG5701   51 LHALAHDFDTHTSDLEEISRKIFSAHFGHLAVVFIWLSGMFFHGARFSNYTAWLADPTGVKPSAQVVWPIVGQEILNADV 130

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759  81 GGGFQGIQVTSGWFQLWRASGITNENELYATAIGGLLMSVLMICAGWFHYHKASPKLEWFQNVESMMNHHLAGLLGLGCL 160
Cdd:COG5701  131 GGGFHGIQITSGLFQMWRAWGITNEFQLYCTAIGALVMAALMLFAGWFHYHKRAPKLEWFQNVESMLNHHLAGLLGLGSL 210

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 161 GWAGHQVHISLPINKLLDAGISAQEIPLPHEFLiNKDLMVQLYPSFAKGILPFFTLDWGVYSDFLTFKGGLNPVTGGLWL 240
Cdd:COG5701  211 AWTGHLIHVSLPVNALLDAGVAAADIPLPHEFL-NPSLMAQLYPGFASGVGPFFTLNWGAFSDFLTFKGGLNPVTGGLWL 289

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 241 SDTAHHHLALATLFLIAGHMYRTNWGIGHSMKEILEGHKGP---FTG-EGHKGLYEILTTSWHAQLAINLAMMGSLSIIV 316
Cdd:COG5701  290 TDIAHHHLAIAVLFIIAGHMYRTNWGIGHSMKEILEAHKGPpllFTGpEGHKGLYEVLTTSWHAQLAINLAMMGSLSIIV 369

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 317 AHHMYAMPAYPFIATDYPTQLSLFTHHMWIGGFCIVGAGAHASIFMVRDYNPAQNYNNLLDRVIRHRDAIISHLNWVCIF 396
Cdd:COG5701  370 AHHMYAMPPYPYLATDYPTQLSLFTHHMWIGGFLIVGAAAHAAIFMVRDYDPAVNQNNVLDRVLRHRDAIISHLNWVCIF 449

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 397 LGFHSFGLYIHNDTMRALGRSQDMFSDTAIQLQPIFAQWIQNIHTLAPGN-TAPNALTTTSYAFGGDLISVSNKVAMMPI 475
Cdd:COG5701  450 LGFHSFGLYIHNDTMRALGRPQDMFSDTAIQLQPVFAQWIQNLHASAPGTaTAPNAGGTVSEAFGGDVVAVGGKVAMMPI 529

                        490       500       510       520
                 ....*....|....*....|....*....|....*....|....*..
gi 953067759 476 SLGTADFMVHHIHAFTIHVTVLILVKGFLFSRNSRLIPDKSNLGFRF 522
Cdd:COG5701  530 PLGTADFMIHHIHAFTIHVTVLILLKGVLFARSSRLIPDKANLGFRF 576
PsaA_PsaB pfam00223
Photosystem I psaA/psaB protein;
1-522 0e+00

Photosystem I psaA/psaB protein;


Pssm-ID: 459719  Cd Length: 719  Bit Score: 860.23  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759    1 LHADAHDFDSHTSSLEEVSRKIFSAHFGQLSIIFLWLSGMYFHGARFSNYVAWLNDPTVIKPSAQVVWPIVGQEVLNG-- 78
Cdd:pfam00223  18 LHATAHDFESHDGDTEELSRKIFSAHFGHLAIIFLWLSGNLFHGAWFSNFEAWLADPLHVKPIAHVVWPHFGQEILNAft 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759   79 DVGGGFQGIQVTSGWFQLWRASGITNENELYATAIGGLLMSVLMICAGWFHYHKASPKLEWFQNVESMMNHHLAGLLGLG 158
Cdd:pfam00223  98 DVGAGFPGVQITSGLFQWWRTIGMTTNGQLYAGAIGLLILAALMLFAGWLHYHKFAPKLEWFKNAESMLNHHLAGLFGLG 177

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759  159 CLGWAGHQVHISLPINKLLDAGISAQEIPLPHEFLiNKDLMVQLYPSFAKGILPFFTLDWGVYSDFLTFKGGLNPVTGGL 238
Cdd:pfam00223 178 SLAWTGHLIHVAIPESRLLDAGVAAADIPLPHPFL-NPDLMGQLYPSFAAGLGPFFTGNWGAYADILTFKGGLHPQTGSL 256

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759  239 WLSDTAHHHLALATLFLIAGHMYRTNWGIGHSMKEILEGHKGP--FTGEGHKGLYEILTTSWHAQLAINLAMMGSLSIIV 316
Cdd:pfam00223 257 WLTDIAHHHLAIAVLFIIAGHMYRTNFGIGHSMKEILEAHKGPggFTGEGHKGLYETLNNSWHAQLGLNLAMLGSVTIIV 336

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759  317 AHHMYAMPAYPFIATDYPTQLSLFTHHMWIGGFCIVGAGAHASIFMVRDYNPAQNYNNLLDRVIRHRDAIISHLNWVCIF 396
Cdd:pfam00223 337 AHHMYALPPYPYIATDYTTQAALFTHHQWIGGFLMVGAFAHGAIFMVRDYDPEVNKNNVLDRVLEHRDAIISHLSWVCLF 416

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759  397 LGFHSFGLYIHNDTMRALGRSQDMFSDTAIQLQPIFAQWIQ----------NIHTLAPGNTAPNALTTTSYAF-GGDLIS 465
Cdd:pfam00223 417 LGFHTFGLYVHNDTMRAFGRPEDMFSDTAILLEPVFAQWIQaahgkalygfNLLASAPGSTAPNAGAGVSDVWlPGDAVN 496

                         490       500       510       520       530
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 953067759  466 VSNKVAMMPISLGTADFMVHHIHAFTIHVTVLILVKGFLFSRNSRLIPDKSNLGFRF 522
Cdd:pfam00223 497 VGGKVSLFPIPLGTADFLVHHIIAFGIHVTVLILLKGVLDARSSRLMPDKKDLGFRF 553
 
Name Accession Description Interval E-value
psaA CHL00056
photosystem I P700 chlorophyll a apoprotein A1
 1-522 0e+00

photosystem I P700 chlorophyll a apoprotein A1


Pssm-ID: 176996  Cd Length: 750  Bit Score: 1065.90  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759   1 LHADAHDFDSHTSSLEEVSRKIFSAHFGQLSIIFLWLSGMYFHGARFSNYVAWLNDPTVIKPSAQVVWPIVGQEVLNGDV 80
Cdd:CHL00056  49 LHADAHDFDSHTSDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSDPTHIKPSAQVVWPIVGQEILNGDV 128

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759  81 GGGFQGIQVTSGWFQLWRASGITNENELYATAIGGLLMSVLMICAGWFHYHKASPKLEWFQNVESMMNHHLAGLLGLGCL 160
Cdd:CHL00056 129 GGGFRGIQITSGFFQIWRASGITSELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSL 208

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 161 GWAGHQVHISLPINKLLDAGISAQEIPLPHEFLINKDLMVQLYPSFAKGILPFFTLDWGVYSDFLTFKGGLNPVTGGLWL 240
Cdd:CHL00056 209 SWAGHQIHVSLPINQLLDAGVDPKEIPLPHEFILNRDLLAQLYPSFAKGLTPFFTLNWSEYSDFLTFRGGLNPVTGGLWL 288

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 241 SDTAHHHLALATLFLIAGHMYRTNWGIGHSMKEILEGHKGPFTGEGHKGLYEILTTSWHAQLAINLAMMGSLSIIVAHHM 320
Cdd:CHL00056 289 TDIAHHHLAIAVLFLIAGHMYRTNWGIGHSLKEILEAHKGPFTGEGHKGLYEILTTSWHAQLALNLAMLGSLTIIVAHHM 368

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 321 YAMPAYPFIATDYPTQLSLFTHHMWIGGFCIVGAGAHASIFMVRDYNPAQNYNNLLDRVIRHRDAIISHLNWVCIFLGFH 400
Cdd:CHL00056 369 YSMPPYPYLATDYGTQLSLFTHHMWIGGFLIVGAAAHAAIFMVRDYDPTTRYNNLLDRVLRHRDAIISHLNWVCIFLGFH 448

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 401 SFGLYIHNDTMRALGRSQDMFSDTAIQLQPIFAQWIQNIHTLAPGNTAPNALTTTSYAFGG-DLISVSNKVAMMPISLGT 479
Cdd:CHL00056 449 SFGLYIHNDTMSALGRPQDMFSDTAIQLQPIFAQWIQNTHALAPGATAPGATASTSLTWGGgDLVAVGGKVALLPIPLGT 528

                        490       500       510       520
                 ....*....|....*....|....*....|....*....|...
gi 953067759 480 ADFMVHHIHAFTIHVTVLILVKGFLFSRNSRLIPDKSNLGFRF 522
Cdd:CHL00056 529 ADFLVHHIHAFTIHVTVLILLKGVLFARSSRLIPDKANLGFRF 571
psaA TIGR01335
photosystem I core protein PsaA; The core proteins of photosystem I are PsaA and PsaB, ...
 1-522 0e+00

photosystem I core protein PsaA; The core proteins of photosystem I are PsaA and PsaB, homologous integral membrane proteins that form a heterodimer. The heterodimer binds the electron-donating chlorophyll dimer P700, as well as chlorophyll, phylloquinone, and 4FE-4S electron acceptors. This model describes PsaA only. [Energy metabolism, Photosynthesis]


Pssm-ID: 130402 [Multi-domain]  Cd Length: 752  Bit Score: 968.66  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759    1 LHADAHDFDSHTSSLEEVSRKIFSAHFGQLSIIFLWLSGMYFHGARFSNYVAWLNDPTVIKPSAQVVWPIVGQEVLNGDV 80
Cdd:TIGR01335  52 LHADAHDFDSHTSDLEDISRKIFSAHFGQLSVIFIWLSGMYFHGARFSNYEAWLSDPTHIKPSAQVVWPIVGQEILNGDV 131

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759   81 GGGFQGIQVTSGWFQLWRASGITNENELYATAIGGLLMSVLMICAGWFHYHKASPKLEWFQNVESMMNHHLAGLLGLGCL 160
Cdd:TIGR01335 132 GGGFHGIQITSGFFQLWRASGITNELQLYVTAIGGLVMAGLMLFAGWFHYHKAAPKLEWFQNVESMLNHHLAGLLGLGSL 211

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759  161 GWAGHQVHISLPINKLLDAGISAQEIPLPHEFLINKDLMVQLYPSFAKGILPFFTLDWGVYSDFLTFKGGLNPVTGGLWL 240
Cdd:TIGR01335 212 SWAGHQIHVSLPINKLLDAGVDPKDIPLPHEFILNRELMAQLYPSFASGLTPFFTLNWGAYSDFLTFRGGLNPVTGGLWL 291

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759  241 SDTAHHHLALATLFLIAGHMYRTNWGIGHSMKEILEGHKGPFTGEGHKGLYEILTTSWHAQLAINLAMMGSLSIIVAHHM 320
Cdd:TIGR01335 292 SDIAHHHLAIAVLFIIAGHMYRTNWGIGHSIKEILEAHKGPFTGSGHKGLYEALTTSWHAQLAINLAMLGSLSIIVAHHM 371

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759  321 YAMPAYPFIATDYPTQLSLFTHHMWIGGFCIVGAGAHASIFMVRDYNPAQNYNNLLDRVIRHRDAIISHLNWVCIFLGFH 400
Cdd:TIGR01335 372 YAMPPYPYLATDYPTQLSLFTHHMWIGGFLIVGAAAHGAIFMVRDYDPSQNYNNVLDRVIRHRDAIISHLNWVCIFLGFH 451

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759  401 SFGLYIHNDTMRALGRSQDMFSDTAIQLQPIFAQWIQNIHTLAPGNTAPNALTTTSYAFGGDLISVSNKVAMMPISLGTA 480
Cdd:TIGR01335 452 SFGLYIHNDTMRALGRPQDMFSDTAIQLQPVFAQWIQNLHTLAPGNTAPNALATTSYAFGGEVVAVGGKVAMMPIKLGTA 531

                         490       500       510       520
                  ....*....|....*....|....*....|....*....|..
gi 953067759  481 DFMVHHIHAFTIHVTVLILVKGFLFSRNSRLIPDKSNLGFRF 522
Cdd:TIGR01335 532 DFMVHHIHAFTIHVTVLILLKGVLFARNSRLIPDKANLGFRF 573
PsaA COG5701
Photosystem I reaction center subunit A1, PsaA [Energy production and conversion]; Photosystem ...
 1-522 0e+00

Photosystem I reaction center subunit A1, PsaA [Energy production and conversion]; Photosystem I reaction center subunit A1, PsaA is part of the Pathway/BioSystem: Photosystem I


Pssm-ID: 444411  Cd Length: 755  Bit Score: 923.47  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759   1 LHADAHDFDSHTSSLEEVSRKIFSAHFGQLSIIFLWLSGMYFHGARFSNYVAWLNDPTVIKPSAQVVWPIVGQEVLNGDV 80
Cdd:COG5701   51 LHALAHDFDTHTSDLEEISRKIFSAHFGHLAVVFIWLSGMFFHGARFSNYTAWLADPTGVKPSAQVVWPIVGQEILNADV 130

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759  81 GGGFQGIQVTSGWFQLWRASGITNENELYATAIGGLLMSVLMICAGWFHYHKASPKLEWFQNVESMMNHHLAGLLGLGCL 160
Cdd:COG5701  131 GGGFHGIQITSGLFQMWRAWGITNEFQLYCTAIGALVMAALMLFAGWFHYHKRAPKLEWFQNVESMLNHHLAGLLGLGSL 210

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 161 GWAGHQVHISLPINKLLDAGISAQEIPLPHEFLiNKDLMVQLYPSFAKGILPFFTLDWGVYSDFLTFKGGLNPVTGGLWL 240
Cdd:COG5701  211 AWTGHLIHVSLPVNALLDAGVAAADIPLPHEFL-NPSLMAQLYPGFASGVGPFFTLNWGAFSDFLTFKGGLNPVTGGLWL 289

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 241 SDTAHHHLALATLFLIAGHMYRTNWGIGHSMKEILEGHKGP---FTG-EGHKGLYEILTTSWHAQLAINLAMMGSLSIIV 316
Cdd:COG5701  290 TDIAHHHLAIAVLFIIAGHMYRTNWGIGHSMKEILEAHKGPpllFTGpEGHKGLYEVLTTSWHAQLAINLAMMGSLSIIV 369

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 317 AHHMYAMPAYPFIATDYPTQLSLFTHHMWIGGFCIVGAGAHASIFMVRDYNPAQNYNNLLDRVIRHRDAIISHLNWVCIF 396
Cdd:COG5701  370 AHHMYAMPPYPYLATDYPTQLSLFTHHMWIGGFLIVGAAAHAAIFMVRDYDPAVNQNNVLDRVLRHRDAIISHLNWVCIF 449

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 397 LGFHSFGLYIHNDTMRALGRSQDMFSDTAIQLQPIFAQWIQNIHTLAPGN-TAPNALTTTSYAFGGDLISVSNKVAMMPI 475
Cdd:COG5701  450 LGFHSFGLYIHNDTMRALGRPQDMFSDTAIQLQPVFAQWIQNLHASAPGTaTAPNAGGTVSEAFGGDVVAVGGKVAMMPI 529

                        490       500       510       520
                 ....*....|....*....|....*....|....*....|....*..
gi 953067759 476 SLGTADFMVHHIHAFTIHVTVLILVKGFLFSRNSRLIPDKSNLGFRF 522
Cdd:COG5701  530 PLGTADFMIHHIHAFTIHVTVLILLKGVLFARSSRLIPDKANLGFRF 576
PsaA_PsaB pfam00223
Photosystem I psaA/psaB protein;
1-522 0e+00

Photosystem I psaA/psaB protein;


Pssm-ID: 459719  Cd Length: 719  Bit Score: 860.23  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759    1 LHADAHDFDSHTSSLEEVSRKIFSAHFGQLSIIFLWLSGMYFHGARFSNYVAWLNDPTVIKPSAQVVWPIVGQEVLNG-- 78
Cdd:pfam00223  18 LHATAHDFESHDGDTEELSRKIFSAHFGHLAIIFLWLSGNLFHGAWFSNFEAWLADPLHVKPIAHVVWPHFGQEILNAft 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759   79 DVGGGFQGIQVTSGWFQLWRASGITNENELYATAIGGLLMSVLMICAGWFHYHKASPKLEWFQNVESMMNHHLAGLLGLG 158
Cdd:pfam00223  98 DVGAGFPGVQITSGLFQWWRTIGMTTNGQLYAGAIGLLILAALMLFAGWLHYHKFAPKLEWFKNAESMLNHHLAGLFGLG 177

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759  159 CLGWAGHQVHISLPINKLLDAGISAQEIPLPHEFLiNKDLMVQLYPSFAKGILPFFTLDWGVYSDFLTFKGGLNPVTGGL 238
Cdd:pfam00223 178 SLAWTGHLIHVAIPESRLLDAGVAAADIPLPHPFL-NPDLMGQLYPSFAAGLGPFFTGNWGAYADILTFKGGLHPQTGSL 256

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759  239 WLSDTAHHHLALATLFLIAGHMYRTNWGIGHSMKEILEGHKGP--FTGEGHKGLYEILTTSWHAQLAINLAMMGSLSIIV 316
Cdd:pfam00223 257 WLTDIAHHHLAIAVLFIIAGHMYRTNFGIGHSMKEILEAHKGPggFTGEGHKGLYETLNNSWHAQLGLNLAMLGSVTIIV 336

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759  317 AHHMYAMPAYPFIATDYPTQLSLFTHHMWIGGFCIVGAGAHASIFMVRDYNPAQNYNNLLDRVIRHRDAIISHLNWVCIF 396
Cdd:pfam00223 337 AHHMYALPPYPYIATDYTTQAALFTHHQWIGGFLMVGAFAHGAIFMVRDYDPEVNKNNVLDRVLEHRDAIISHLSWVCLF 416

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759  397 LGFHSFGLYIHNDTMRALGRSQDMFSDTAIQLQPIFAQWIQ----------NIHTLAPGNTAPNALTTTSYAF-GGDLIS 465
Cdd:pfam00223 417 LGFHTFGLYVHNDTMRAFGRPEDMFSDTAILLEPVFAQWIQaahgkalygfNLLASAPGSTAPNAGAGVSDVWlPGDAVN 496

                         490       500       510       520       530
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 953067759  466 VSNKVAMMPISLGTADFMVHHIHAFTIHVTVLILVKGFLFSRNSRLIPDKSNLGFRF 522
Cdd:pfam00223 497 VGGKVSLFPIPLGTADFLVHHIIAFGIHVTVLILLKGVLDARSSRLMPDKKDLGFRF 553
psaB CHL00054
photosystem I P700 chlorophyll a apoprotein A2
 3-522 3.75e-152

photosystem I P700 chlorophyll a apoprotein A2


Pssm-ID: 176995  Cd Length: 734  Bit Score: 452.25  E-value: 3.75e-152
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759   3 ADAHDFDSHTSSLEE-VSRKIFSAHFGQLSIIFLWLSGMYFHGARFSNYVAWLNDPTVIKPSAQVVW-PIVGQEVLNGDV 80
Cdd:CHL00054  26 ATAHDFESHDDITEErLYQKIFASHFGQLAIIFLWTSGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWdPHFGQPAVEAFT 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759  81 GGGFQGIQ--VTSGWFQLWRASGITNENELYATAIGGLLMSVLMICAGWFHYH-KASPKLEWFQNVESMMNHHLAGLLGL 157
Cdd:CHL00054 106 RGGALGPVniAYSGVYQWWYTIGLRTNEDLYTGALFLLFLSALSLIAGWLHLQpKWKPSVSWFKNAESRLNHHLSGLFGV 185

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 158 GCLGWAGHQVHISLPINKLLDAGISAQEIPLPHeflinkdlmvqlypsfAKGILPFFTLDWGVYSD-------------- 223
Cdd:CHL00054 186 SSLAWTGHLVHVAIPESRGEHVRWNNFLDVLPH----------------PQGLGPLFTGQWNLYAQnpdssshlfgtsqg 249

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 224 ----FLTFKGGLNPVTGGLWLSDTAHHHLALATLFLIAGHMYRTNWGIGHSMKEILEGHKGP--FTGEGHKGLYEILTTS 297
Cdd:CHL00054 250 agtaILTFLGGFHPQTQSLWLTDIAHHHLAIAVVFLIAGHMYRTNFGIGHSMKDILEAHIPPggRLGRGHKGLYDTINNS 329

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 298 WHAQLAINLAMMGSLSIIVAHHMYAMPAYPFIATDYPTQLSLFTHHMWIGGFCIVGAGAHASIFMVRDYNPAQNYNNLLD 377
Cdd:CHL00054 330 LHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHHQYIAGFIMTGAFAHGAIFFIRDYNPEQNEDNVLA 409

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 378 RVIRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMRALGRSQDMfsdtaIQLQPIFAQWIQNIH--------TLAPGNTAP 449
Cdd:CHL00054 410 RMLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQ-----ILIEPIFAQWIQSAHgktsygfdVLLSSTNSP 484

                        490       500       510       520       530       540       550
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 953067759 450 NALTTTSYAFGGDLISVSNKVAMMPISLGTADFMVHHIHAFTIHVTVLILVKGFLFSRNSRLIPDKSNLGFRF 522
Cdd:CHL00054 485 AFNAGRSIWLPGWLNAINENSNSLFLTIGPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGYSF 557
PsaB COG5702
Photosystem I reaction center subunit A2, PsaB [Energy production and conversion]; Photosystem ...
 3-522 1.81e-147

Photosystem I reaction center subunit A2, PsaB [Energy production and conversion]; Photosystem I reaction center subunit A2, PsaB is part of the Pathway/BioSystem: Photosystem I


Pssm-ID: 444412  Cd Length: 741  Bit Score: 440.47  E-value: 1.81e-147
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759   3 ADAHDFDSHTSSLEE-VSRKIFSAHFGQLSIIFLWLSGMYFHGARFSNYVAWLNDPTVIKPSAQVVW-PIVGQEVLNGDV 80
Cdd:COG5702   26 ATAHDFESHDGMTEEnLYQKIFATHFGHLAIIFLWSSGNLFHVAWQGNFEQWIQDPLNVRPIAHAIWdPHFGKPAIEAFT 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759  81 GGGFQGI--QVTSGWFQLWRASGITNENELYATAIGGLLMSVLMICAGWFHYH-KASPKLEWFQNVESMMNHHLAGLLGL 157
Cdd:COG5702  106 QAGASNPvnICYSGLYHWWYTIGMRTNTDLYQGSIFLLLLAAVMLFAGWLHLQpKFRPSLAWFKNAESRLNHHLAGLFGV 185

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 158 GCLGWAGHQVHISLPINKLLDAGISAQEIPLPHeflinkdlmvqlypsfAKGILPFFTLDWGVYSD-------------- 223
Cdd:COG5702  186 SSLAWTGHLVHVAIPESRGQHVGWDNFLSTLPH----------------PAGLAPFFTGNWGVYAQnpdtaghafgtsqg 249

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 224 ----FLTFKGGLNPVTGGLWLSDTAHHHLALATLFLIAGHMYRTNWGIGHSMKEILEGHKGP------FTGEGHKGLYEI 293
Cdd:COG5702  250 agtaILTFLGGFHPQTESLWLTDIAHHHLAIAVIFIIAGHMYRTNFGIGHSIKEILEAHQGPgrsgffKTGLGHKGLYDT 329

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 294 LTTSWHAQLAINLAMMGSLSIIVAHHMYAMPAYPFIATDYPTQLSLFTHHMWIGGFCIVGAGAHASIFMVRDYNPAQNYN 373
Cdd:COG5702  330 INNSLHFQLGLALACLGVITSLVAQHMYALPPYAFIAQDYTTQAALYTHHQYIAGFLMIGAFAHGAIFFVRDYDPEANKD 409

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 374 NLLDRVIRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMRALGRSQDMfsdtaIQLQPIFAQWIQNIHTLA---------- 443
Cdd:COG5702  410 NVLARMLEHKEAIISHLSWVSLFLGFHTLGLYVHNDVVVAFGTPEKQ-----ILIEPVFAQFIQAAHGKVlygidtllsn 484

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 444 PGNTAPNALTTTSYAF-GGDLISVSNKVAMMPISLGTADFMVHHIHAFTIHVTVLILVKGFLFSRNSRLIPDKSNLGFRF 522
Cdd:COG5702  485 PDSVASTAWPNYGNVWlPGWLEAVNNGANSLFLTIGPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGYAF 564
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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