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Concise Results
Standard Results
Full Results
PsaA, partial (chloroplast) [Ballia sp. GWS-2015a]
Protein Classification
photosystem I psaA/psaB family protein ( domain architecture ID 954 )
photosystem I psaA/psaB family protein may bind P700, the primary electron donor of PSI, which is a plastocyanin-ferredoxin oxidoreductase essential for light-driven electron transport, as well as the electron acceptors A0, A1 and FX
List of domain hits
Name
Accession
Description
Interval
E-value
psaB super family
cl08224
photosystem I P700 chlorophyll a apoprotein A2
1-522
0e+00
photosystem I P700 chlorophyll a apoprotein A2
The actual alignment was detected with superfamily member CHL00056 :Pssm-ID: 471792
Cd Length: 750
Bit Score: 1065.90
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 1 LHADAHDFDSHTS S LEE V SRK I FSAHFGQLSIIFLWLSGMYFHGARFSNY V AWL N DPT V IKPSAQVVWPIVGQE V LNGDV 80
Cdd:CHL00056 49 LHADAHDFDSHTS D LEE I SRK V FSAHFGQLSIIFLWLSGMYFHGARFSNY E AWL S DPT H IKPSAQVVWPIVGQE I LNGDV 128
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 81 GGGF Q GIQ V TSG W FQ L WRASGIT N E NE LY A TAIG G L LMSV LM IC AGWFHYHKA S PKL E WFQ N VESM M NHHLAGLLGLG C L 160
Cdd:CHL00056 129 GGGF R GIQ I TSG F FQ I WRASGIT S E LQ LY C TAIG A L VFAA LM LF AGWFHYHKA A PKL A WFQ D VESM L NHHLAGLLGLG S L 208
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 161 G WAGHQ V H I SLPIN K LLDAG ISAQ EIPLPHEF LI N K DL MV QLYPSFAKG IL PFFTL D W GV YSDFLTF K GGLNPVTGGLWL 240
Cdd:CHL00056 209 S WAGHQ I H V SLPIN Q LLDAG VDPK EIPLPHEF IL N R DL LA QLYPSFAKG LT PFFTL N W SE YSDFLTF R GGLNPVTGGLWL 288
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 241 S D T AHHHLA L A T LFLIAGHMYRTNWGIGHS M KEILE G HKGPFTGEGHKGLYEILTTSWHAQLA I NLAM M GSL S IIVAHHM 320
Cdd:CHL00056 289 T D I AHHHLA I A V LFLIAGHMYRTNWGIGHS L KEILE A HKGPFTGEGHKGLYEILTTSWHAQLA L NLAM L GSL T IIVAHHM 368
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 321 Y A MP A YP FI ATDY P TQLSLFTHHMWIGGF C IVGA G AHA S IFMVRDY N P AQN YNNLLDRV I RHRDAIISHLNWVCIFLGFH 400
Cdd:CHL00056 369 Y S MP P YP YL ATDY G TQLSLFTHHMWIGGF L IVGA A AHA A IFMVRDY D P TTR YNNLLDRV L RHRDAIISHLNWVCIFLGFH 448
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 401 SFGLYIHNDTM R ALGR S QDMFSDTAIQLQPIFAQWIQN I H T LAPG N TAP N A LTT TS YAF GG - DL IS V SN KVA MM PI S LGT 479
Cdd:CHL00056 449 SFGLYIHNDTM S ALGR P QDMFSDTAIQLQPIFAQWIQN T H A LAPG A TAP G A TAS TS LTW GG g DL VA V GG KVA LL PI P LGT 528
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 953067759 480 ADF M VHHIHAFTIHVTVLIL V KG F LF S R N SRLIPDK S NLGFRF 522
Cdd:CHL00056 529 ADF L VHHIHAFTIHVTVLIL L KG V LF A R S SRLIPDK A NLGFRF 571
Name
Accession
Description
Interval
E-value
psaA
CHL00056
photosystem I P700 chlorophyll a apoprotein A1
1-522
0e+00
photosystem I P700 chlorophyll a apoprotein A1
Pssm-ID: 176996
Cd Length: 750
Bit Score: 1065.90
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 1 LHADAHDFDSHTS S LEE V SRK I FSAHFGQLSIIFLWLSGMYFHGARFSNY V AWL N DPT V IKPSAQVVWPIVGQE V LNGDV 80
Cdd:CHL00056 49 LHADAHDFDSHTS D LEE I SRK V FSAHFGQLSIIFLWLSGMYFHGARFSNY E AWL S DPT H IKPSAQVVWPIVGQE I LNGDV 128
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 81 GGGF Q GIQ V TSG W FQ L WRASGIT N E NE LY A TAIG G L LMSV LM IC AGWFHYHKA S PKL E WFQ N VESM M NHHLAGLLGLG C L 160
Cdd:CHL00056 129 GGGF R GIQ I TSG F FQ I WRASGIT S E LQ LY C TAIG A L VFAA LM LF AGWFHYHKA A PKL A WFQ D VESM L NHHLAGLLGLG S L 208
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 161 G WAGHQ V H I SLPIN K LLDAG ISAQ EIPLPHEF LI N K DL MV QLYPSFAKG IL PFFTL D W GV YSDFLTF K GGLNPVTGGLWL 240
Cdd:CHL00056 209 S WAGHQ I H V SLPIN Q LLDAG VDPK EIPLPHEF IL N R DL LA QLYPSFAKG LT PFFTL N W SE YSDFLTF R GGLNPVTGGLWL 288
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 241 S D T AHHHLA L A T LFLIAGHMYRTNWGIGHS M KEILE G HKGPFTGEGHKGLYEILTTSWHAQLA I NLAM M GSL S IIVAHHM 320
Cdd:CHL00056 289 T D I AHHHLA I A V LFLIAGHMYRTNWGIGHS L KEILE A HKGPFTGEGHKGLYEILTTSWHAQLA L NLAM L GSL T IIVAHHM 368
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 321 Y A MP A YP FI ATDY P TQLSLFTHHMWIGGF C IVGA G AHA S IFMVRDY N P AQN YNNLLDRV I RHRDAIISHLNWVCIFLGFH 400
Cdd:CHL00056 369 Y S MP P YP YL ATDY G TQLSLFTHHMWIGGF L IVGA A AHA A IFMVRDY D P TTR YNNLLDRV L RHRDAIISHLNWVCIFLGFH 448
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 401 SFGLYIHNDTM R ALGR S QDMFSDTAIQLQPIFAQWIQN I H T LAPG N TAP N A LTT TS YAF GG - DL IS V SN KVA MM PI S LGT 479
Cdd:CHL00056 449 SFGLYIHNDTM S ALGR P QDMFSDTAIQLQPIFAQWIQN T H A LAPG A TAP G A TAS TS LTW GG g DL VA V GG KVA LL PI P LGT 528
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 953067759 480 ADF M VHHIHAFTIHVTVLIL V KG F LF S R N SRLIPDK S NLGFRF 522
Cdd:CHL00056 529 ADF L VHHIHAFTIHVTVLIL L KG V LF A R S SRLIPDK A NLGFRF 571
psaA
TIGR01335
photosystem I core protein PsaA; The core proteins of photosystem I are PsaA and PsaB, ...
1-522
0e+00
photosystem I core protein PsaA; The core proteins of photosystem I are PsaA and PsaB, homologous integral membrane proteins that form a heterodimer. The heterodimer binds the electron-donating chlorophyll dimer P700, as well as chlorophyll, phylloquinone, and 4FE-4S electron acceptors. This model describes PsaA only. [Energy metabolism, Photosynthesis]
Pssm-ID: 130402 [Multi-domain]
Cd Length: 752
Bit Score: 968.66
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 1 LHADAHDFDSHTS S LE EV SRKIFSAHFGQLS I IF L WLSGMYFHGARFSNY V AWL N DPT V IKPSAQVVWPIVGQE V LNGDV 80
Cdd:TIGR01335 52 LHADAHDFDSHTS D LE DI SRKIFSAHFGQLS V IF I WLSGMYFHGARFSNY E AWL S DPT H IKPSAQVVWPIVGQE I LNGDV 131
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 81 GGGF Q GIQ V TSG W FQLWRASGITNE NE LY A TAIGGL L M SV LM IC AGWFHYHKA S PKLEWFQNVESM M NHHLAGLLGLG C L 160
Cdd:TIGR01335 132 GGGF H GIQ I TSG F FQLWRASGITNE LQ LY V TAIGGL V M AG LM LF AGWFHYHKA A PKLEWFQNVESM L NHHLAGLLGLG S L 211
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 161 G WAGHQ V H I SLPINKLLDAG ISAQE IPLPHEF LI N KD LM V QLYPSFA K G IL PFFTL D WG V YSDFLTF K GGLNPVTGGLWL 240
Cdd:TIGR01335 212 S WAGHQ I H V SLPINKLLDAG VDPKD IPLPHEF IL N RE LM A QLYPSFA S G LT PFFTL N WG A YSDFLTF R GGLNPVTGGLWL 291
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 241 SD T AHHHLA L A T LF L IAGHMYRTNWGIGHS M KEILE G HKGPFTG E GHKGLYE I LTTSWHAQLAINLAM M GSLSIIVAHHM 320
Cdd:TIGR01335 292 SD I AHHHLA I A V LF I IAGHMYRTNWGIGHS I KEILE A HKGPFTG S GHKGLYE A LTTSWHAQLAINLAM L GSLSIIVAHHM 371
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 321 YAMP A YP FI ATDYPTQLSLFTHHMWIGGF C IVGA G AH AS IFMVRDY N P A QNYNN L LDRVIRHRDAIISHLNWVCIFLGFH 400
Cdd:TIGR01335 372 YAMP P YP YL ATDYPTQLSLFTHHMWIGGF L IVGA A AH GA IFMVRDY D P S QNYNN V LDRVIRHRDAIISHLNWVCIFLGFH 451
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 401 SFGLYIHNDTMRALGR S QDMFSDTAIQLQP I FAQWIQN I HTLAPGNTAPNAL T TTSYAFGG DLIS V SN KVAMMPI S LGTA 480
Cdd:TIGR01335 452 SFGLYIHNDTMRALGR P QDMFSDTAIQLQP V FAQWIQN L HTLAPGNTAPNAL A TTSYAFGG EVVA V GG KVAMMPI K LGTA 531
490 500 510 520
....*....|....*....|....*....|....*....|..
gi 953067759 481 DFMVHHIHAFTIHVTVLIL V KG F LF S RNSRLIPDK S NLGFRF 522
Cdd:TIGR01335 532 DFMVHHIHAFTIHVTVLIL L KG V LF A RNSRLIPDK A NLGFRF 573
PsaA
COG5701
Photosystem I reaction center subunit A1, PsaA [Energy production and conversion]; Photosystem ...
1-522
0e+00
Photosystem I reaction center subunit A1, PsaA [Energy production and conversion]; Photosystem I reaction center subunit A1, PsaA is part of the Pathway/BioSystem: Photosystem I
Pssm-ID: 444411
Cd Length: 755
Bit Score: 923.47
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 1 LHA D AHDFD S HTS S LEE V SRKIFSAHFG Q L SII F L WLSGM Y FHGARFSNY V AWL N DPT VI KPSAQVVWPIVGQE V LN G DV 80
Cdd:COG5701 51 LHA L AHDFD T HTS D LEE I SRKIFSAHFG H L AVV F I WLSGM F FHGARFSNY T AWL A DPT GV KPSAQVVWPIVGQE I LN A DV 130
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 81 GGGF Q GIQ V TSG W FQ L WRA S GITNE NE LY A TAIG G L L M SV LM IC AGWFHYHK AS PKLEWFQNVESM M NHHLAGLLGLG C L 160
Cdd:COG5701 131 GGGF H GIQ I TSG L FQ M WRA W GITNE FQ LY C TAIG A L V M AA LM LF AGWFHYHK RA PKLEWFQNVESM L NHHLAGLLGLG S L 210
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 161 G W A GH QV H I SLP I N K LLDAG IS A QE IPLPHEFL i N KD LM V QLYP S FA K G IL PFFTL D WG VY SDFLTFKGGLNPVTGGLWL 240
Cdd:COG5701 211 A W T GH LI H V SLP V N A LLDAG VA A AD IPLPHEFL - N PS LM A QLYP G FA S G VG PFFTL N WG AF SDFLTFKGGLNPVTGGLWL 289
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 241 S D T AHHHLA L A T LF L IAGHMYRTNWGIGHSMKEILE G HKGP --- FTG - EGHKGLYE I LTTSWHAQLAINLAMMGSLSIIV 316
Cdd:COG5701 290 T D I AHHHLA I A V LF I IAGHMYRTNWGIGHSMKEILE A HKGP pll FTG p EGHKGLYE V LTTSWHAQLAINLAMMGSLSIIV 369
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 317 AHHMYAMP A YP FI ATDYPTQLSLFTHHMWIGGF C IVGA G AHA S IFMVRDY N PA Q N Y NN L LDRV I RHRDAIISHLNWVCIF 396
Cdd:COG5701 370 AHHMYAMP P YP YL ATDYPTQLSLFTHHMWIGGF L IVGA A AHA A IFMVRDY D PA V N Q NN V LDRV L RHRDAIISHLNWVCIF 449
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 397 LGFHSFGLYIHNDTMRALGR S QDMFSDTAIQLQP I FAQWIQN I H TL APG N - TAPNA LT T T S Y AFGGD LIS V SN KVAMMPI 475
Cdd:COG5701 450 LGFHSFGLYIHNDTMRALGR P QDMFSDTAIQLQP V FAQWIQN L H AS APG T a TAPNA GG T V S E AFGGD VVA V GG KVAMMPI 529
490 500 510 520
....*....|....*....|....*....|....*....|....*..
gi 953067759 476 S LGTADFM V HHIHAFTIHVTVLIL V KG F LF S R N SRLIPDK S NLGFRF 522
Cdd:COG5701 530 P LGTADFM I HHIHAFTIHVTVLIL L KG V LF A R S SRLIPDK A NLGFRF 576
PsaA_PsaB
pfam00223
Photosystem I psaA/psaB protein;
1-522
0e+00
Photosystem I psaA/psaB protein;
Pssm-ID: 459719
Cd Length: 719
Bit Score: 860.23
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 1 LHA D AHDF D SH TSSL EE V SRKIFSAHFG Q L S IIFLWLSG MY FHGA R FSN YV AWL N DP TVI KP S A Q VVWP IV GQE V LN G -- 78
Cdd:pfam00223 18 LHA T AHDF E SH DGDT EE L SRKIFSAHFG H L A IIFLWLSG NL FHGA W FSN FE AWL A DP LHV KP I A H VVWP HF GQE I LN A ft 97
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 79 DVG G GF Q G I Q V TSG W FQ L WR AS G I T NENE LYA T AIG G L LMSV LM IC AGW F HYHK AS PKLEWF Q N V ESM M NHHLAGL L GLG 158
Cdd:pfam00223 98 DVG A GF P G V Q I TSG L FQ W WR TI G M T TNGQ LYA G AIG L L ILAA LM LF AGW L HYHK FA PKLEWF K N A ESM L NHHLAGL F GLG 177
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 159 C L G W A GH QV H ISL P INK LLDAG IS A QE IPLPH E FL i N K DLM V QLYPSFA K G IL PFFT LD WG V Y S D F LTFKGGL N P V TG G L 238
Cdd:pfam00223 178 S L A W T GH LI H VAI P ESR LLDAG VA A AD IPLPH P FL - N P DLM G QLYPSFA A G LG PFFT GN WG A Y A D I LTFKGGL H P Q TG S L 256
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 239 WL S D T AHHHLA L A T LF L IAGHMYRTN W GIGHSMKEILE G HKGP -- FTGEGHKGLYE I L TT SWHAQL AI NLAM M GS LS IIV 316
Cdd:pfam00223 257 WL T D I AHHHLA I A V LF I IAGHMYRTN F GIGHSMKEILE A HKGP gg FTGEGHKGLYE T L NN SWHAQL GL NLAM L GS VT IIV 336
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 317 AHHMYA M P A YP F IATDY P TQ LS LFTHH M WIGGF CI VGA G AH AS IFMVRDY N P AQ N Y NN L LDRV IR HRDAIISHL N WVC I F 396
Cdd:pfam00223 337 AHHMYA L P P YP Y IATDY T TQ AA LFTHH Q WIGGF LM VGA F AH GA IFMVRDY D P EV N K NN V LDRV LE HRDAIISHL S WVC L F 416
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 397 LGFH S FGLY I HNDTMRA L GR SQ DMFSDTAI Q L Q P I FAQWIQ ---------- N IHTL APG N TAPNA LTTT S YAF - G GD LIS 465
Cdd:pfam00223 417 LGFH T FGLY V HNDTMRA F GR PE DMFSDTAI L L E P V FAQWIQ aahgkalygf N LLAS APG S TAPNA GAGV S DVW l P GD AVN 496
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*..
gi 953067759 466 V SN KV AMM PI S LGTADF M VHHI H AF T IHVTVLIL V KG F L FS R N SRL I PDK SN LGFRF 522
Cdd:pfam00223 497 V GG KV SLF PI P LGTADF L VHHI I AF G IHVTVLIL L KG V L DA R S SRL M PDK KD LGFRF 553
Name
Accession
Description
Interval
E-value
psaA
CHL00056
photosystem I P700 chlorophyll a apoprotein A1
1-522
0e+00
photosystem I P700 chlorophyll a apoprotein A1
Pssm-ID: 176996
Cd Length: 750
Bit Score: 1065.90
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 1 LHADAHDFDSHTS S LEE V SRK I FSAHFGQLSIIFLWLSGMYFHGARFSNY V AWL N DPT V IKPSAQVVWPIVGQE V LNGDV 80
Cdd:CHL00056 49 LHADAHDFDSHTS D LEE I SRK V FSAHFGQLSIIFLWLSGMYFHGARFSNY E AWL S DPT H IKPSAQVVWPIVGQE I LNGDV 128
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 81 GGGF Q GIQ V TSG W FQ L WRASGIT N E NE LY A TAIG G L LMSV LM IC AGWFHYHKA S PKL E WFQ N VESM M NHHLAGLLGLG C L 160
Cdd:CHL00056 129 GGGF R GIQ I TSG F FQ I WRASGIT S E LQ LY C TAIG A L VFAA LM LF AGWFHYHKA A PKL A WFQ D VESM L NHHLAGLLGLG S L 208
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 161 G WAGHQ V H I SLPIN K LLDAG ISAQ EIPLPHEF LI N K DL MV QLYPSFAKG IL PFFTL D W GV YSDFLTF K GGLNPVTGGLWL 240
Cdd:CHL00056 209 S WAGHQ I H V SLPIN Q LLDAG VDPK EIPLPHEF IL N R DL LA QLYPSFAKG LT PFFTL N W SE YSDFLTF R GGLNPVTGGLWL 288
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 241 S D T AHHHLA L A T LFLIAGHMYRTNWGIGHS M KEILE G HKGPFTGEGHKGLYEILTTSWHAQLA I NLAM M GSL S IIVAHHM 320
Cdd:CHL00056 289 T D I AHHHLA I A V LFLIAGHMYRTNWGIGHS L KEILE A HKGPFTGEGHKGLYEILTTSWHAQLA L NLAM L GSL T IIVAHHM 368
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 321 Y A MP A YP FI ATDY P TQLSLFTHHMWIGGF C IVGA G AHA S IFMVRDY N P AQN YNNLLDRV I RHRDAIISHLNWVCIFLGFH 400
Cdd:CHL00056 369 Y S MP P YP YL ATDY G TQLSLFTHHMWIGGF L IVGA A AHA A IFMVRDY D P TTR YNNLLDRV L RHRDAIISHLNWVCIFLGFH 448
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 401 SFGLYIHNDTM R ALGR S QDMFSDTAIQLQPIFAQWIQN I H T LAPG N TAP N A LTT TS YAF GG - DL IS V SN KVA MM PI S LGT 479
Cdd:CHL00056 449 SFGLYIHNDTM S ALGR P QDMFSDTAIQLQPIFAQWIQN T H A LAPG A TAP G A TAS TS LTW GG g DL VA V GG KVA LL PI P LGT 528
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 953067759 480 ADF M VHHIHAFTIHVTVLIL V KG F LF S R N SRLIPDK S NLGFRF 522
Cdd:CHL00056 529 ADF L VHHIHAFTIHVTVLIL L KG V LF A R S SRLIPDK A NLGFRF 571
psaA
TIGR01335
photosystem I core protein PsaA; The core proteins of photosystem I are PsaA and PsaB, ...
1-522
0e+00
photosystem I core protein PsaA; The core proteins of photosystem I are PsaA and PsaB, homologous integral membrane proteins that form a heterodimer. The heterodimer binds the electron-donating chlorophyll dimer P700, as well as chlorophyll, phylloquinone, and 4FE-4S electron acceptors. This model describes PsaA only. [Energy metabolism, Photosynthesis]
Pssm-ID: 130402 [Multi-domain]
Cd Length: 752
Bit Score: 968.66
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 1 LHADAHDFDSHTS S LE EV SRKIFSAHFGQLS I IF L WLSGMYFHGARFSNY V AWL N DPT V IKPSAQVVWPIVGQE V LNGDV 80
Cdd:TIGR01335 52 LHADAHDFDSHTS D LE DI SRKIFSAHFGQLS V IF I WLSGMYFHGARFSNY E AWL S DPT H IKPSAQVVWPIVGQE I LNGDV 131
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 81 GGGF Q GIQ V TSG W FQLWRASGITNE NE LY A TAIGGL L M SV LM IC AGWFHYHKA S PKLEWFQNVESM M NHHLAGLLGLG C L 160
Cdd:TIGR01335 132 GGGF H GIQ I TSG F FQLWRASGITNE LQ LY V TAIGGL V M AG LM LF AGWFHYHKA A PKLEWFQNVESM L NHHLAGLLGLG S L 211
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 161 G WAGHQ V H I SLPINKLLDAG ISAQE IPLPHEF LI N KD LM V QLYPSFA K G IL PFFTL D WG V YSDFLTF K GGLNPVTGGLWL 240
Cdd:TIGR01335 212 S WAGHQ I H V SLPINKLLDAG VDPKD IPLPHEF IL N RE LM A QLYPSFA S G LT PFFTL N WG A YSDFLTF R GGLNPVTGGLWL 291
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 241 SD T AHHHLA L A T LF L IAGHMYRTNWGIGHS M KEILE G HKGPFTG E GHKGLYE I LTTSWHAQLAINLAM M GSLSIIVAHHM 320
Cdd:TIGR01335 292 SD I AHHHLA I A V LF I IAGHMYRTNWGIGHS I KEILE A HKGPFTG S GHKGLYE A LTTSWHAQLAINLAM L GSLSIIVAHHM 371
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 321 YAMP A YP FI ATDYPTQLSLFTHHMWIGGF C IVGA G AH AS IFMVRDY N P A QNYNN L LDRVIRHRDAIISHLNWVCIFLGFH 400
Cdd:TIGR01335 372 YAMP P YP YL ATDYPTQLSLFTHHMWIGGF L IVGA A AH GA IFMVRDY D P S QNYNN V LDRVIRHRDAIISHLNWVCIFLGFH 451
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 401 SFGLYIHNDTMRALGR S QDMFSDTAIQLQP I FAQWIQN I HTLAPGNTAPNAL T TTSYAFGG DLIS V SN KVAMMPI S LGTA 480
Cdd:TIGR01335 452 SFGLYIHNDTMRALGR P QDMFSDTAIQLQP V FAQWIQN L HTLAPGNTAPNAL A TTSYAFGG EVVA V GG KVAMMPI K LGTA 531
490 500 510 520
....*....|....*....|....*....|....*....|..
gi 953067759 481 DFMVHHIHAFTIHVTVLIL V KG F LF S RNSRLIPDK S NLGFRF 522
Cdd:TIGR01335 532 DFMVHHIHAFTIHVTVLIL L KG V LF A RNSRLIPDK A NLGFRF 573
PsaA
COG5701
Photosystem I reaction center subunit A1, PsaA [Energy production and conversion]; Photosystem ...
1-522
0e+00
Photosystem I reaction center subunit A1, PsaA [Energy production and conversion]; Photosystem I reaction center subunit A1, PsaA is part of the Pathway/BioSystem: Photosystem I
Pssm-ID: 444411
Cd Length: 755
Bit Score: 923.47
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 1 LHA D AHDFD S HTS S LEE V SRKIFSAHFG Q L SII F L WLSGM Y FHGARFSNY V AWL N DPT VI KPSAQVVWPIVGQE V LN G DV 80
Cdd:COG5701 51 LHA L AHDFD T HTS D LEE I SRKIFSAHFG H L AVV F I WLSGM F FHGARFSNY T AWL A DPT GV KPSAQVVWPIVGQE I LN A DV 130
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 81 GGGF Q GIQ V TSG W FQ L WRA S GITNE NE LY A TAIG G L L M SV LM IC AGWFHYHK AS PKLEWFQNVESM M NHHLAGLLGLG C L 160
Cdd:COG5701 131 GGGF H GIQ I TSG L FQ M WRA W GITNE FQ LY C TAIG A L V M AA LM LF AGWFHYHK RA PKLEWFQNVESM L NHHLAGLLGLG S L 210
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 161 G W A GH QV H I SLP I N K LLDAG IS A QE IPLPHEFL i N KD LM V QLYP S FA K G IL PFFTL D WG VY SDFLTFKGGLNPVTGGLWL 240
Cdd:COG5701 211 A W T GH LI H V SLP V N A LLDAG VA A AD IPLPHEFL - N PS LM A QLYP G FA S G VG PFFTL N WG AF SDFLTFKGGLNPVTGGLWL 289
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 241 S D T AHHHLA L A T LF L IAGHMYRTNWGIGHSMKEILE G HKGP --- FTG - EGHKGLYE I LTTSWHAQLAINLAMMGSLSIIV 316
Cdd:COG5701 290 T D I AHHHLA I A V LF I IAGHMYRTNWGIGHSMKEILE A HKGP pll FTG p EGHKGLYE V LTTSWHAQLAINLAMMGSLSIIV 369
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 317 AHHMYAMP A YP FI ATDYPTQLSLFTHHMWIGGF C IVGA G AHA S IFMVRDY N PA Q N Y NN L LDRV I RHRDAIISHLNWVCIF 396
Cdd:COG5701 370 AHHMYAMP P YP YL ATDYPTQLSLFTHHMWIGGF L IVGA A AHA A IFMVRDY D PA V N Q NN V LDRV L RHRDAIISHLNWVCIF 449
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 397 LGFHSFGLYIHNDTMRALGR S QDMFSDTAIQLQP I FAQWIQN I H TL APG N - TAPNA LT T T S Y AFGGD LIS V SN KVAMMPI 475
Cdd:COG5701 450 LGFHSFGLYIHNDTMRALGR P QDMFSDTAIQLQP V FAQWIQN L H AS APG T a TAPNA GG T V S E AFGGD VVA V GG KVAMMPI 529
490 500 510 520
....*....|....*....|....*....|....*....|....*..
gi 953067759 476 S LGTADFM V HHIHAFTIHVTVLIL V KG F LF S R N SRLIPDK S NLGFRF 522
Cdd:COG5701 530 P LGTADFM I HHIHAFTIHVTVLIL L KG V LF A R S SRLIPDK A NLGFRF 576
PsaA_PsaB
pfam00223
Photosystem I psaA/psaB protein;
1-522
0e+00
Photosystem I psaA/psaB protein;
Pssm-ID: 459719
Cd Length: 719
Bit Score: 860.23
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 1 LHA D AHDF D SH TSSL EE V SRKIFSAHFG Q L S IIFLWLSG MY FHGA R FSN YV AWL N DP TVI KP S A Q VVWP IV GQE V LN G -- 78
Cdd:pfam00223 18 LHA T AHDF E SH DGDT EE L SRKIFSAHFG H L A IIFLWLSG NL FHGA W FSN FE AWL A DP LHV KP I A H VVWP HF GQE I LN A ft 97
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 79 DVG G GF Q G I Q V TSG W FQ L WR AS G I T NENE LYA T AIG G L LMSV LM IC AGW F HYHK AS PKLEWF Q N V ESM M NHHLAGL L GLG 158
Cdd:pfam00223 98 DVG A GF P G V Q I TSG L FQ W WR TI G M T TNGQ LYA G AIG L L ILAA LM LF AGW L HYHK FA PKLEWF K N A ESM L NHHLAGL F GLG 177
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 159 C L G W A GH QV H ISL P INK LLDAG IS A QE IPLPH E FL i N K DLM V QLYPSFA K G IL PFFT LD WG V Y S D F LTFKGGL N P V TG G L 238
Cdd:pfam00223 178 S L A W T GH LI H VAI P ESR LLDAG VA A AD IPLPH P FL - N P DLM G QLYPSFA A G LG PFFT GN WG A Y A D I LTFKGGL H P Q TG S L 256
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 239 WL S D T AHHHLA L A T LF L IAGHMYRTN W GIGHSMKEILE G HKGP -- FTGEGHKGLYE I L TT SWHAQL AI NLAM M GS LS IIV 316
Cdd:pfam00223 257 WL T D I AHHHLA I A V LF I IAGHMYRTN F GIGHSMKEILE A HKGP gg FTGEGHKGLYE T L NN SWHAQL GL NLAM L GS VT IIV 336
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 317 AHHMYA M P A YP F IATDY P TQ LS LFTHH M WIGGF CI VGA G AH AS IFMVRDY N P AQ N Y NN L LDRV IR HRDAIISHL N WVC I F 396
Cdd:pfam00223 337 AHHMYA L P P YP Y IATDY T TQ AA LFTHH Q WIGGF LM VGA F AH GA IFMVRDY D P EV N K NN V LDRV LE HRDAIISHL S WVC L F 416
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 397 LGFH S FGLY I HNDTMRA L GR SQ DMFSDTAI Q L Q P I FAQWIQ ---------- N IHTL APG N TAPNA LTTT S YAF - G GD LIS 465
Cdd:pfam00223 417 LGFH T FGLY V HNDTMRA F GR PE DMFSDTAI L L E P V FAQWIQ aahgkalygf N LLAS APG S TAPNA GAGV S DVW l P GD AVN 496
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*..
gi 953067759 466 V SN KV AMM PI S LGTADF M VHHI H AF T IHVTVLIL V KG F L FS R N SRL I PDK SN LGFRF 522
Cdd:pfam00223 497 V GG KV SLF PI P LGTADF L VHHI I AF G IHVTVLIL L KG V L DA R S SRL M PDK KD LGFRF 553
psaB
CHL00054
photosystem I P700 chlorophyll a apoprotein A2
3-522
3.75e-152
photosystem I P700 chlorophyll a apoprotein A2
Pssm-ID: 176995
Cd Length: 734
Bit Score: 452.25
E-value: 3.75e-152
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 3 A D AHDF D SH TSSL EE - VSR KIF SA HFGQL S IIFLW L SG MY FH G A RFS N YV AW LN DP TVIK P S A QVV W - P IV GQ EVLNGDV 80
Cdd:CHL00054 26 A T AHDF E SH DDIT EE r LYQ KIF AS HFGQL A IIFLW T SG NL FH V A WQG N FE AW VQ DP LHVR P I A HAI W d P HF GQ PAVEAFT 105
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 81 G GG FQ G IQ -- VT SG WF Q L W RAS G ITNENE LY AT A IGG L LM S V L MIC AGW F H YH - K AS P KLE WF Q N V ES MM NHHL A GL L G L 157
Cdd:CHL00054 106 R GG AL G PV ni AY SG VY Q W W YTI G LRTNED LY TG A LFL L FL S A L SLI AGW L H LQ p K WK P SVS WF K N A ES RL NHHL S GL F G V 185
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 158 GC L G W A GH Q VH ISL P INKLLDAGISAQEIP LPH eflinkdlmvqlypsf AK G IL P F FT LD W GV Y SD -------------- 223
Cdd:CHL00054 186 SS L A W T GH L VH VAI P ESRGEHVRWNNFLDV LPH ---------------- PQ G LG P L FT GQ W NL Y AQ npdssshlfgtsqg 249
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 224 ---- F LTF K GG LN P V T GG LWL S D T AHHHLA L A TL FLIAGHMYRTN W GIGHSMK E ILE G H KG P -- FT G E GHKGLY EILTT S 297
Cdd:CHL00054 250 agta I LTF L GG FH P Q T QS LWL T D I AHHHLA I A VV FLIAGHMYRTN F GIGHSMK D ILE A H IP P gg RL G R GHKGLY DTINN S 329
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 298 W H A QL AIN LA MM G SLSII VA H HMY AM PAY P FIA T D YP TQ LS L F THH MW I G GF CIV GA G AH AS IF MV RDYNP A QN YN N L L D 377
Cdd:CHL00054 330 L H F QL GLA LA SL G VITSL VA Q HMY SL PAY A FIA Q D FT TQ AA L Y THH QY I A GF IMT GA F AH GA IF FI RDYNP E QN ED N V L A 409
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 378 R VIR H RD AIISHL N W VCI FLGFH SF GLY I HND T M R A L G RSQDM fsdta I QLQ PIFAQWIQ NI H -------- T L APGNTA P 449
Cdd:CHL00054 410 R MLD H KE AIISHL S W ASL FLGFH TL GLY V HND V M L A F G TPEKQ ----- I LIE PIFAQWIQ SA H gktsygfd V L LSSTNS P 484
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 953067759 450 NALTTT S YAFG G D L ISVSNKVAMMPISL G TA DF M VHH IH A FTI H V T V LILVKG F L FS R N S R L I PDK SNL G FR F 522
Cdd:CHL00054 485 AFNAGR S IWLP G W L NAINENSNSLFLTI G PG DF L VHH AI A LGL H T T T LILVKG A L DA R G S K L M PDK KDF G YS F 557
PsaB
COG5702
Photosystem I reaction center subunit A2, PsaB [Energy production and conversion]; Photosystem ...
3-522
1.81e-147
Photosystem I reaction center subunit A2, PsaB [Energy production and conversion]; Photosystem I reaction center subunit A2, PsaB is part of the Pathway/BioSystem: Photosystem I
Pssm-ID: 444412
Cd Length: 741
Bit Score: 440.47
E-value: 1.81e-147
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 3 A D AHDF D SH TSSL EE - VSR KIF SA HFG Q L S IIFLW L SG MY FH G A RFS N YVA W LN DP TVIK P S A QVV W - P IV G QEVLNGDV 80
Cdd:COG5702 26 A T AHDF E SH DGMT EE n LYQ KIF AT HFG H L A IIFLW S SG NL FH V A WQG N FEQ W IQ DP LNVR P I A HAI W d P HF G KPAIEAFT 105
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 81 GG G FQGI -- QVT SG WFQL W RAS G ITNENE LY ATA I GG LL MSVL M IC AGW F H YH - K AS P K L E WF Q N V ES MM NHHLAGL L G L 157
Cdd:COG5702 106 QA G ASNP vn ICY SG LYHW W YTI G MRTNTD LY QGS I FL LL LAAV M LF AGW L H LQ p K FR P S L A WF K N A ES RL NHHLAGL F G V 185
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 158 GC L G W A GH Q VH ISL P INKLLDA G ISAQEIP LPH eflinkdlmvqlypsf AK G IL PFFT LD WGVY SD -------------- 223
Cdd:COG5702 186 SS L A W T GH L VH VAI P ESRGQHV G WDNFLST LPH ---------------- PA G LA PFFT GN WGVY AQ npdtaghafgtsqg 249
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 224 ---- F LTF K GG LN P V T GG LWL S D T AHHHLA L A TL F L IAGHMYRTN W GIGHS M KEILE G H K GP ------ F TG E GHKGLY EI 293
Cdd:COG5702 250 agta I LTF L GG FH P Q T ES LWL T D I AHHHLA I A VI F I IAGHMYRTN F GIGHS I KEILE A H Q GP grsgff K TG L GHKGLY DT 329
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 294 LTT S W H A QL AIN LA MM G SLSII VA H HMYA M P A Y P FIA T DY P TQ LS L F THH MW I G GF CIV GA G AH AS IF M VRDY N P AQ N YN 373
Cdd:COG5702 330 INN S L H F QL GLA LA CL G VITSL VA Q HMYA L P P Y A FIA Q DY T TQ AA L Y THH QY I A GF LMI GA F AH GA IF F VRDY D P EA N KD 409
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 374 N L L D R VIR H RD AIISHL N WV CI FLGFH SF GLY I HND TMR A L G RSQDM fsdta I QLQ P I FAQ W IQ NI H TLA ---------- 443
Cdd:COG5702 410 N V L A R MLE H KE AIISHL S WV SL FLGFH TL GLY V HND VVV A F G TPEKQ ----- I LIE P V FAQ F IQ AA H GKV lygidtllsn 484
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 953067759 444 P GNT A PN A LTTTSYAF - G G D L IS V S N KVAMMPISL G TA DF M VHH IH A FTI H V T V LILVKG F L FS R N S R L I PDK SNL G FR F 522
Cdd:COG5702 485 P DSV A ST A WPNYGNVW l P G W L EA V N N GANSLFLTI G PG DF L VHH AI A LGL H T T T LILVKG A L DA R G S K L M PDK KDF G YA F 564
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01