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Conserved domains on  [gi|963762880|gb|ALT10044|]
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cytochrome b, partial (mitochondrion) [Bradypterus seebohmi]

Protein Classification

cytochrome b( domain architecture ID 11475906)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-346 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 684.32  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880   1 GSLLGICLIMQIITGLLLAMHYTADTALAFSSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKETW 80
Cdd:MTH00119  35 GSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETW 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880  81 NVGVVLLLMLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFAIHFLLPFVIAGLT 160
Cdd:MTH00119 115 NTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLT 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880 161 LVHLTLLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFALMFILLASLALFSPNLLGDPENFTPANPLATPPHIKPEWY 240
Cdd:MTH00119 195 LIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWY 274

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880 241 FLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSKLRSMTFRPLSQILFWTLVANVLVLTWVGSQPVEHPFIIIGQL 320
Cdd:MTH00119 275 FLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQL 354

                        330       340
                 ....*....|....*....|....*.
gi 963762880 321 ASLSYFTIILVLFPLASILENKMLKL 346
Cdd:MTH00119 355 ASILYFTILLILFPLLGALENKMLNY 380
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-346 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 684.32  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880   1 GSLLGICLIMQIITGLLLAMHYTADTALAFSSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKETW 80
Cdd:MTH00119  35 GSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETW 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880  81 NVGVVLLLMLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFAIHFLLPFVIAGLT 160
Cdd:MTH00119 115 NTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLT 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880 161 LVHLTLLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFALMFILLASLALFSPNLLGDPENFTPANPLATPPHIKPEWY 240
Cdd:MTH00119 195 LIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWY 274

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880 241 FLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSKLRSMTFRPLSQILFWTLVANVLVLTWVGSQPVEHPFIIIGQL 320
Cdd:MTH00119 275 FLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQL 354

                        330       340
                 ....*....|....*....|....*.
gi 963762880 321 ASLSYFTIILVLFPLASILENKMLKL 346
Cdd:MTH00119 355 ASILYFTILLILFPLLGALENKMLNY 380
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-340 3.14e-123

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 359.49  E-value: 3.14e-123
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880   1 GSLLGICLIMQIITGLLLAMHYTADTALAFSSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSY-----L 75
Cdd:COG1290   43 GELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYkkpreL 122

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880  76 NketWNVGVVLLLMLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFAIH-FLLPF 154
Cdd:COG1290  123 N---WIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPA 199

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880 155 VIAGLTLVHLTLLHETGSNNPLGI----PSDCDKIPFHPYYSTKDILGFALMFILLASLALFSPNllGDPENFTPANPLA 230
Cdd:COG1290  200 LLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLA 277

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880 231 TPPHIKPEWYFLFAYAILRSIP--NKLGGVLALAASVLVLFLMPLLHTSKLRSMTFRPLSQILFWTLVANVLVLTWVGSQ 308
Cdd:COG1290  278 TPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGAN 357

                        330       340       350
                 ....*....|....*....|....*....|..
gi 963762880 309 PVehPFIIIGQLASLSYFTIILVLFPLASILE 340
Cdd:COG1290  358 PP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-173 5.44e-77

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 234.96  E-value: 5.44e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880   1 GSLLGICLIMQIITGLLLAMHYTADTALAFSSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLN--KE 78
Cdd:cd00284   26 GSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKKprEL 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880  79 TWNVGVVLLLMLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFAIHFLLPFVIAG 158
Cdd:cd00284  106 TWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAV 185

                        170
                 ....*....|....*
gi 963762880 159 LTLVHLTLLHETGSN 173
Cdd:cd00284  186 IVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-171 1.61e-67

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 210.32  E-value: 1.61e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880    1 GSLLGICLIMQIITGLLLAMHYTADTALAFSSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYG--SYLNKE 78
Cdd:pfam00033  17 GSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPREL 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880   79 TWNVGVVLLLMLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFAIHFLLPFVIAG 158
Cdd:pfam00033  97 TWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAI 176

                         170
                  ....*....|...
gi 963762880  159 LTLVHLTLLHETG 171
Cdd:pfam00033 177 LMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 203-306 3.30e-12

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 63.66  E-value: 3.30e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880  203 FILLASLALFSPNLLGDPenftpANPLATPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHT-SKLRS 281
Cdd:TIGR01156  48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENvNKFQN 122

                          90       100
                  ....*....|....*....|....*
gi 963762880  282 MTFRPLSQILFwtlVANVLVLTWVG 306
Cdd:TIGR01156 123 PFRRPVATTVF---LFGTVVALWLG 144
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-346 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 684.32  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880   1 GSLLGICLIMQIITGLLLAMHYTADTALAFSSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKETW 80
Cdd:MTH00119  35 GSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETW 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880  81 NVGVVLLLMLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFAIHFLLPFVIAGLT 160
Cdd:MTH00119 115 NTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLT 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880 161 LVHLTLLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFALMFILLASLALFSPNLLGDPENFTPANPLATPPHIKPEWY 240
Cdd:MTH00119 195 LIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWY 274

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880 241 FLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSKLRSMTFRPLSQILFWTLVANVLVLTWVGSQPVEHPFIIIGQL 320
Cdd:MTH00119 275 FLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQL 354

                        330       340
                 ....*....|....*....|....*.
gi 963762880 321 ASLSYFTIILVLFPLASILENKMLKL 346
Cdd:MTH00119 355 ASILYFTILLILFPLLGALENKMLNY 380
CYTB MTH00131
cytochrome b; Provisional
 1-345 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 634.00  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880   1 GSLLGICLIMQIITGLLLAMHYTADTALAFSSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKETW 80
Cdd:MTH00131  34 GSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETW 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880  81 NVGVVLLLMLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFAIHFLLPFVIAGLT 160
Cdd:MTH00131 114 NIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAAT 193

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880 161 LVHLTLLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFALMFILLASLALFSPNLLGDPENFTPANPLATPPHIKPEWY 240
Cdd:MTH00131 194 ILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWY 273

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880 241 FLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSKLRSMTFRPLSQILFWTLVANVLVLTWVGSQPVEHPFIIIGQL 320
Cdd:MTH00131 274 FLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIGGMPVEHPFIIIGQV 353

                        330       340
                 ....*....|....*....|....*
gi 963762880 321 ASLSYFTIILVLFPLASILENKMLK 345
Cdd:MTH00131 354 ASVLYFSLFLVLMPLAGWLENKALE 378
CYTB MTH00100
cytochrome b; Provisional
 1-345 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 627.44  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880   1 GSLLGICLIMQIITGLLLAMHYTADTALAFSSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKETW 80
Cdd:MTH00100  34 GSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETW 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880  81 NVGVVLLLMLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFAIHFLLPFVIAGLT 160
Cdd:MTH00100 114 NIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALA 193

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880 161 LVHLTLLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFALMFILLASLALFSPNLLGDPENFTPANPLATPPHIKPEWY 240
Cdd:MTH00100 194 MVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWY 273

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880 241 FLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSKLRSMTFRPLSQILFWTLVANVLVLTWVGSQPVEHPFIIIGQL 320
Cdd:MTH00100 274 FLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQL 353

                        330       340
                 ....*....|....*....|....*
gi 963762880 321 ASLSYFTIILVLFPLASILENKMLK 345
Cdd:MTH00100 354 ASILYFLIILILMPIASLIENNLLK 378
CYTB MTH00074
cytochrome b; Provisional
 1-346 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 608.22  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880   1 GSLLGICLIMQIITGLLLAMHYTADTALAFSSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKETW 80
Cdd:MTH00074  35 GSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETW 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880  81 NVGVVLLLMLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFAIHFLLPFVIAGLT 160
Cdd:MTH00074 115 NIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGAS 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880 161 LVHLTLLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFALMFILLASLALFSPNLLGDPENFTPANPLATPPHIKPEWY 240
Cdd:MTH00074 195 IIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWY 274

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880 241 FLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSKLRSMTFRPLSQILFWTLVANVLVLTWVGSQPVEHPFIIIGQL 320
Cdd:MTH00074 275 FLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVANTLILTWIGGQPVEDPFIEIGQA 354

                        330       340
                 ....*....|....*....|....*.
gi 963762880 321 ASLSYFTIILVLFPLASILENKMLKL 346
Cdd:MTH00074 355 ASILYFLLFIIIIPLTGWLENKLLKW 380
CYTB MTH00191
cytochrome b; Provisional
 1-335 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 578.02  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880   1 GSLLGICLIMQIITGLLLAMHYTADTALAFSSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKETW 80
Cdd:MTH00191  31 GSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETW 110

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880  81 NVGVVLLLMLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFAIHFLLPFVIAGLT 160
Cdd:MTH00191 111 NVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALS 190

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880 161 LVHLTLLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFALMFILLASLALFSPNLLGDPENFTPANPLATPPHIKPEWY 240
Cdd:MTH00191 191 LIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWY 270

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880 241 FLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSKLRSMTFRPLSQILFWTLVANVLVLTWVGSQPVEHPFIIIGQL 320
Cdd:MTH00191 271 FLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANFILLTWLGGQPVEDPFILLGQI 350

                        330
                 ....*....|....*
gi 963762880 321 ASLSYFTIILVLFPL 335
Cdd:MTH00191 351 SSFLYFFLFLLLFPL 365
CYTB MTH00156
cytochrome b; Provisional
 1-333 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 562.48  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880   1 GSLLGICLIMQIITGLLLAMHYTADTALAFSSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKETW 80
Cdd:MTH00156  24 GSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTW 103

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880  81 NVGVVLLLMLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFAIHFLLPFVIAGLT 160
Cdd:MTH00156 104 MSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMV 183

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880 161 LVHLTLLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFALMFILLASLALFSPNLLGDPENFTPANPLATPPHIKPEWY 240
Cdd:MTH00156 184 MIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWY 263

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880 241 FLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSKLRSMTFRPLSQILFWTLVANVLVLTWVGSQPVEHPFIIIGQL 320
Cdd:MTH00156 264 FLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQI 343

                        330
                 ....*....|...
gi 963762880 321 ASLSYFTIILVLF 333
Cdd:MTH00156 344 LTILYFLYFIINP 356
CYTB MTH00034
cytochrome b; Validated
 1-344 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 562.40  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880   1 GSLLGICLIMQIITGLLLAMHYTADTALAFSSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKETW 80
Cdd:MTH00034  34 GSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETW 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880  81 NVGVVLLLMLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFAIHFLLPFVIAGLT 160
Cdd:MTH00034 114 NIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALS 193

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880 161 LVHLTLLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFALMFILLASLALFSPNLLGDPENFTPANPLATPPHIKPEWY 240
Cdd:MTH00034 194 IIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWY 273

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880 241 FLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSKLRSMTFRPLSQILFWTLVANVLVLTWVGSQPVEHPFIIIGQL 320
Cdd:MTH00034 274 FLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIATFFILTWIGSQPVEYPFILLGQV 353

                        330       340
                 ....*....|....*....|....
gi 963762880 321 ASLSYFTIILVLFPLASILENKML 344
Cdd:MTH00034 354 ASVLYFSLFLFFFPLISYLENKLI 377
CYTB MTH00145
cytochrome b; Provisional
 1-344 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 555.67  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880   1 GSLLGICLIMQIITGLLLAMHYTADTALAFSSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKETW 80
Cdd:MTH00145  35 GSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTW 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880  81 NVGVVLLLMLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFAIHFLLPFVIAGLT 160
Cdd:MTH00145 115 NIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLS 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880 161 LVHLTLLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFALMFILLASLALFSPNLLGDPENFTPANPLATPPHIKPEWY 240
Cdd:MTH00145 195 VLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWY 274

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880 241 FLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSKLRSMTFRPLSQILFWTLVANVLVLTWVGSQPVEHPFIIIGQL 320
Cdd:MTH00145 275 FLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNFFILTWIGACPVEEPYETIGQV 354

                        330       340
                 ....*....|....*....|....
gi 963762880 321 ASLSYFTIILVLfPLASILENKML 344
Cdd:MTH00145 355 FTVLYFLFFLIL-PLVQKLWDNIL 377
CYTB MTH00016
cytochrome b; Validated
 1-345 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 523.09  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880   1 GSLLGICLIMQIITGLLLAMHYTADTALAFSSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKETW 80
Cdd:MTH00016  35 GSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETW 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880  81 NVGVVLLLMLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFAIHFLLPFVIAGLT 160
Cdd:MTH00016 115 NIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALS 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880 161 LVHLTLLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFALMFILLASLALFSPNLLGDPENFTPANPLATPPHIKPEWY 240
Cdd:MTH00016 195 MIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWY 274

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880 241 FLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSKLRSMTFRPLSQILFWTLVANVLVLTWVGSQPVEHPFIIIGQL 320
Cdd:MTH00016 275 FLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQI 354

                        330       340
                 ....*....|....*....|....*
gi 963762880 321 ASLSYFTiILVLFPLASILENKMLK 345
Cdd:MTH00016 355 FTVFYFF-YFMINPLLMKLWDKLLK 378
CYTB MTH00053
cytochrome b; Provisional
 1-346 1.07e-169

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 477.28  E-value: 1.07e-169
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880   1 GSLLGICLIMQIITGLLLAMHYTADTALAFSSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKETW 80
Cdd:MTH00053  35 GSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVW 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880  81 NVGVVLLLMLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFAIHFLLPFVIAGLT 160
Cdd:MTH00053 115 NVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLA 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880 161 LVHLTLLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFALMFILLASLALFSPNLLGDPENFTPANPLATPPHIKPEWY 240
Cdd:MTH00053 195 LVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWY 274

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880 241 FLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSKLRSMTFRPLSQILFWTLVANVLVLTWVGSQPVEHPFIIIGQL 320
Cdd:MTH00053 275 FLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQI 354

                        330       340
                 ....*....|....*....|....*.
gi 963762880 321 ASLSYFTIILVLFPLASILENKMLKL 346
Cdd:MTH00053 355 ASIFYFAYFLILMPLAGYLENKLLKL 380
CYTB MTH00022
cytochrome b; Validated
 1-345 2.44e-169

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 476.12  E-value: 2.44e-169
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880   1 GSLLGICLIMQIITGLLLAMHYTADTALAFSSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKETW 80
Cdd:MTH00022  33 GSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVW 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880  81 NVGVVLLLMLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFAIHFLLPFVIAGLT 160
Cdd:MTH00022 113 NVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLV 192

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880 161 LVHLTLLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFALMFILLASLALFSPNLLGDPENFTPANPLATPPHIKPEWY 240
Cdd:MTH00022 193 IVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWY 272

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880 241 FLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSKLRSMTFRPLSQILFWTLVANVLVLTWVGSQPVEHPFIIIGQL 320
Cdd:MTH00022 273 FLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDFILLTWIGSQVVEEPFILIGQL 352

                        330       340
                 ....*....|....*....|....*
gi 963762880 321 ASLSYFTIILVLFPLASILENKMLK 345
Cdd:MTH00022 353 LSFFYFFYFLVLIPLLGELENQLLF 377
CYTB MTH00224
cytochrome b; Provisional
 1-345 4.16e-156

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 442.82  E-value: 4.16e-156
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880   1 GSLLGICLIMQIITGLLLAMHYTADTALAFSSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKETW 80
Cdd:MTH00224  35 GSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETW 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880  81 NVGVVLLLMLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFAIHFLLPFVIAGLT 160
Cdd:MTH00224 115 NIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGAT 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880 161 LVHLTLLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFALMFILLASLALFSPNLLGDPENFTPANPLATPPHIKPEWY 240
Cdd:MTH00224 195 ILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWY 274

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880 241 FLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSKLRSMTFRPLSQILFWTLVANVLVLTWVGSQPVEHPFIIIGQL 320
Cdd:MTH00224 275 FLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQV 354

                        330       340
                 ....*....|....*....|....*
gi 963762880 321 ASLSYFTiILVLFPLASILENKMLK 345
Cdd:MTH00224 355 FTILYFS-YFIISPAISKLWDDLLN 378
CYTB MTH00033
cytochrome b; Provisional
 1-341 6.30e-127

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 368.88  E-value: 6.30e-127
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880   1 GSLLGICLIMQIITGLLLAMHYTADTALAFSSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKETW 80
Cdd:MTH00033  31 GSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTW 110

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880  81 NVGVVLLLMLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFAIHFLLPFVIAGLT 160
Cdd:MTH00033 111 IVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLV 190

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880 161 LVHLTLLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFALMFILLASLALFS--PNLLGDPENFTPANPLATPPHIKPE 238
Cdd:MTH00033 191 LAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDPENFIQANPLVTPVHIQPE 270

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880 239 WYFLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSKLRSMTFRPLSQILFWTLVANVLVLTWVGSQPV-EHPFIII 317
Cdd:MTH00033 271 WYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILTWIGSAPAgADPYVLI 350

                        330       340
                 ....*....|....*....|....
gi 963762880 318 GQLASLSYFTIILVLFPLASILEN 341
Cdd:MTH00033 351 GRIATIFYFGYFLVLVPLLGYLSN 374
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-340 3.14e-123

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 359.49  E-value: 3.14e-123
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880   1 GSLLGICLIMQIITGLLLAMHYTADTALAFSSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSY-----L 75
Cdd:COG1290   43 GELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYkkpreL 122

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880  76 NketWNVGVVLLLMLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFAIH-FLLPF 154
Cdd:COG1290  123 N---WIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPA 199

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880 155 VIAGLTLVHLTLLHETGSNNPLGI----PSDCDKIPFHPYYSTKDILGFALMFILLASLALFSPNllGDPENFTPANPLA 230
Cdd:COG1290  200 LLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLA 277

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880 231 TPPHIKPEWYFLFAYAILRSIP--NKLGGVLALAASVLVLFLMPLLHTSKLRSMTFRPLSQILFWTLVANVLVLTWVGSQ 308
Cdd:COG1290  278 TPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGAN 357

                        330       340       350
                 ....*....|....*....|....*....|..
gi 963762880 309 PVehPFIIIGQLASLSYFTIILVLFPLASILE 340
Cdd:COG1290  358 PP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
CYTB MTH00086
cytochrome b; Provisional
 1-333 4.18e-108

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 319.96  E-value: 4.18e-108
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880   1 GSLLGICLIMQIITGLLLAMHYTADTALAFSSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKETW 80
Cdd:MTH00086  23 GSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVW 102

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880  81 NVGVVLLLMLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFAIHFLLPFVIAGLT 160
Cdd:MTH00086 103 ISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLV 182

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880 161 LVHLTLLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFaLMFILLASLALFSPNLLGDPENFTPANPLATPPHIKPEWY 240
Cdd:MTH00086 183 LFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNI-IFWLVFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWY 261

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880 241 FLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSklrSMTFRPLSQILFWTLVANVLVLTWVGSQPVEHPFIIIGQL 320
Cdd:MTH00086 262 FLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNY---TSCLNKLNKFLVFSFIVVNVILSWLGQCLVEYPFLFLSQI 338

                        330
                 ....*....|...
gi 963762880 321 ASLSYFTIILVLF 333
Cdd:MTH00086 339 FSFIYFFLILLML 351
CYTB MTH00046
cytochrome b; Validated
 1-333 1.96e-83

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 256.83  E-value: 1.96e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880   1 GSLLGICLIMQIITGLLLAMHYTADTALAFSSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKETW 80
Cdd:MTH00046  25 GFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVW 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880  81 NVGVVLLLMLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFAIHFLLPFVIAGLT 160
Cdd:MTH00046 105 NVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLM 184

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880 161 LVHLTLLHETGSNNPLGIPSD-CDKIPFHPYYSTKDILGFALMFILLASLALFSPNLLGDPENFTPANPLATPPHIKPEW 239
Cdd:MTH00046 185 VVHLFYLHKSGSSNPLFSSNGySDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEW 264

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880 240 YFLFAYAILRSIPNKLGGvLALAASVLVLFLMPLLHTSKLRSMtfrpLSQILFWTLVANVLVLTWVGSQPVEHPFIIIGQ 319
Cdd:MTH00046 265 YFLAFYAMLRSINSKIGG-LVLVLSFLFFLWVPTFNGSSVYSV----WRQVNFWLIVSLFFSLSYLGGCHPEYPYLLISQ 339

                        330
                 ....*....|....
gi 963762880 320 LASLSyftIILVLF 333
Cdd:MTH00046 340 LFSVL---MVLLLF 350
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-173 5.44e-77

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 234.96  E-value: 5.44e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880   1 GSLLGICLIMQIITGLLLAMHYTADTALAFSSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLN--KE 78
Cdd:cd00284   26 GSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKKprEL 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880  79 TWNVGVVLLLMLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFAIHFLLPFVIAG 158
Cdd:cd00284  106 TWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAV 185

                        170
                 ....*....|....*
gi 963762880 159 LTLVHLTLLHETGSN 173
Cdd:cd00284  186 IVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-171 1.61e-67

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 210.32  E-value: 1.61e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880    1 GSLLGICLIMQIITGLLLAMHYTADTALAFSSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYG--SYLNKE 78
Cdd:pfam00033  17 GSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPREL 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880   79 TWNVGVVLLLMLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFAIHFLLPFVIAG 158
Cdd:pfam00033  97 TWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAI 176

                         170
                  ....*....|...
gi 963762880  159 LTLVHLTLLHETG 171
Cdd:pfam00033 177 LMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 174-321 3.03e-58

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 185.16  E-value: 3.03e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880 174 NPLGIPSDCDKIPFHPYYSTKDILGFALMFILLASLALFSPNLLGDPENFTPANPLATPPHIKPEWYFLFAYAILRSIPN 253
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 963762880 254 KLGGVLALAASVLVLFLMPLLHTSKLRSmTFRPLSQILFWTLVANVLVLTWVGSQPVEHPFIIIGQLA 321
Cdd:cd00290   81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
225-325 1.10e-48

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 158.80  E-value: 1.10e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880  225 PANPLATPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSKLRSMTFRPLSQILFWTLVANVLVLTW 304
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 963762880  305 VGSQPVEHPFIIIGQLASLSY 325
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
55-220 2.29e-40

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 139.68  E-value: 2.29e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880   55 SFFFICIYFHIGRGIYYGSYLNKE--TWNVGVVLLLMLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAW 132
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880  133 GGFSVDNPTLTRFFAIHF-LLPFVIAGLTLVHLTLLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFALMFILLASLAL 211
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 963762880  212 FSPNLLGDP 220
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 1-176 2.78e-32

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 120.20  E-value: 2.78e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880   1 GSLLGICLIMQIITGLLLAMHYTADTALAFSSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKE-- 78
Cdd:PRK03735  45 GGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRel 124

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880  79 TWNVGVVLLLMLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFAIH-FLLPFVIA 157
Cdd:PRK03735 125 NWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALA 204

                        170
                 ....*....|....*....
gi 963762880 158 GLTLVHLTLLHETGSNNPL 176
Cdd:PRK03735 205 VLMLAHFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 1-157 2.27e-27

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 106.73  E-value: 2.27e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880   1 GSLLGICLIMQIITGLLLAMHYTADTALAFSSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKE-- 78
Cdd:CHL00070  37 GGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRel 116

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880  79 TWNVGVVLLLMLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFAIH-FLLPFVIA 157
Cdd:CHL00070 117 TWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTA 196
petD CHL00058
cytochrome b6/f complex subunit IV
 196-306 3.98e-13

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 66.18  E-value: 3.98e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880 196 ILGfalMFILLASLALFSPNLLGDPenftpANPLATPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLMPLL- 274
Cdd:CHL00058  44 ILG---TIACNVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLe 115

                         90       100       110
                 ....*....|....*....|....*....|..
gi 963762880 275 HTSKLRSMTFRPLSQILFwtlVANVLVLTWVG 306
Cdd:CHL00058 116 NVNKFQNPFRRPVATTVF---LIGTAVALWLG 144
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 203-306 5.11e-13

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 65.97  E-value: 5.11e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880 203 FILLASLALFSPNLLGDPenftpANPLATPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHT-SKLRS 281
Cdd:COG5679   49 IALCIGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENvNKFQN 123

                         90       100
                 ....*....|....*....|....*
gi 963762880 282 MTFRPLSQILFwtlVANVLVLTWVG 306
Cdd:COG5679  124 PFRRPVATAVF---LFGTLVTLWLG 145
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 203-306 3.30e-12

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 63.66  E-value: 3.30e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 963762880  203 FILLASLALFSPNLLGDPenftpANPLATPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHT-SKLRS 281
Cdd:TIGR01156  48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENvNKFQN 122

                          90       100
                  ....*....|....*....|....*
gi 963762880  282 MTFRPLSQILFwtlVANVLVLTWVG 306
Cdd:TIGR01156 123 PFRRPVATTVF---LFGTVVALWLG 144
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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