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Conserved domains on  [gi|969943557|gb|ALU32926|]
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cytochrome b, partial (mitochondrion) [Amblysomus sp. UM]

Protein Classification

cytochrome b( domain architecture ID 999999)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-309 0e+00

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 640.15  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557   1 LTGLFLAMHYTSDTSTAFSSVTHICRDVNNGWLIRYLHANGASMFFICLFTHIGRGIYYGSYLFLETWNIGIILLFAVMA 80
Cdd:MTH00100  46 LTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMA 125

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557  81 TAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALTMVHLLFLHETGS 160
Cdd:MTH00100 126 TAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGS 205

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557 161 NNPSGLNSDADKIPFHPYYTVKDLLGVLILLLFLLLLTLFSPDLLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIP 240
Cdd:MTH00100 206 NNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIP 285

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 969943557 241 NKLGGVLALVFSILILAAFPLLHMSNQRSLMFRPLSQCMFWILVADLLILTWIGGQPVEHPF*IIGQLA 309
Cdd:MTH00100 286 NKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLA 354
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-309 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 640.15  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557   1 LTGLFLAMHYTSDTSTAFSSVTHICRDVNNGWLIRYLHANGASMFFICLFTHIGRGIYYGSYLFLETWNIGIILLFAVMA 80
Cdd:MTH00100  46 LTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMA 125

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557  81 TAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALTMVHLLFLHETGS 160
Cdd:MTH00100 126 TAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGS 205

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557 161 NNPSGLNSDADKIPFHPYYTVKDLLGVLILLLFLLLLTLFSPDLLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIP 240
Cdd:MTH00100 206 NNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIP 285

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 969943557 241 NKLGGVLALVFSILILAAFPLLHMSNQRSLMFRPLSQCMFWILVADLLILTWIGGQPVEHPF*IIGQLA 309
Cdd:MTH00100 286 NKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLA 354
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-309 3.96e-112

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 329.83  E-value: 3.96e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557   1 LTGLFLAMHYTSDTSTAFSSVTHICRDVNNGWLIRYLHANGASMFFICLFTHIGRGIYYGSY-----LfleTWNIGIILL 75
Cdd:COG1290   55 LTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYkkpreL---NWIIGVLLL 131

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557  76 FAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFH-FILPFIVAALTMVHLLF 154
Cdd:COG1290  132 LLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWL 211

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557 155 LHETGSNNPSG----LNSDADKIPFHPYYTVKDLLGVLILLLFLLLLTLFSPDllGDPDNYIPANPLNTPPHIKPEWYFL 230
Cdd:COG1290  212 LHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFL 289

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557 231 FAYAILRSIP--NKLGGVLALVFSILILAAFPLLHMSNQRSLMFRPLSQCMFWILVADLLILTWIGGQPVehPF*IIGQL 308
Cdd:COG1290  290 PFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP--IATLLGSI 367


                 .
gi 969943557 309 A 309
Cdd:COG1290  368 N 368
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-161 2.24e-79

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 239.58  E-value: 2.24e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557   1 LTGLFLAMHYTSDTSTAFSSVTHICRDVNNGWLIRYLHANGASMFFICLFTHIGRGIYYGSY--LFLETWNIGIILLFAV 78
Cdd:cd00284   38 LTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLT 117

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557  79 MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALTMVHLLFLHET 158
Cdd:cd00284  118 MATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQ 197


                 ...
gi 969943557 159 GSN 161
Cdd:cd00284  198 GSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-159 7.84e-74

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 224.95  E-value: 7.84e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557    1 LTGLFLAMHYTSDTSTAFSSVTHICRDVNNGWLIRYLHANGASMFFICLFTHIGRGIYYG--SYLFLETWNIGIILLFAV 78
Cdd:pfam00033  29 LTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVILLVLT 108

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557   79 MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALTMVHLLFLHET 158
Cdd:pfam00033 109 MSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHET 188


                  .
gi 969943557  159 G 159
Cdd:pfam00033 189 G 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 213-294 2.17e-08

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 52.49  E-value: 2.17e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557  213 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVFSILILAAFPLLHMSNQRSLMF-RPLSQCMFWIlvaDLLILT 291
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFrRPVATTVFLF---GTVVAL 141


                  ...
gi 969943557  292 WIG 294
Cdd:TIGR01156 142 WLG 144
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-309 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 640.15  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557   1 LTGLFLAMHYTSDTSTAFSSVTHICRDVNNGWLIRYLHANGASMFFICLFTHIGRGIYYGSYLFLETWNIGIILLFAVMA 80
Cdd:MTH00100  46 LTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMA 125

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557  81 TAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALTMVHLLFLHETGS 160
Cdd:MTH00100 126 TAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGS 205

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557 161 NNPSGLNSDADKIPFHPYYTVKDLLGVLILLLFLLLLTLFSPDLLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIP 240
Cdd:MTH00100 206 NNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIP 285

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 969943557 241 NKLGGVLALVFSILILAAFPLLHMSNQRSLMFRPLSQCMFWILVADLLILTWIGGQPVEHPF*IIGQLA 309
Cdd:MTH00100 286 NKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLA 354
CYTB MTH00119
cytochrome b; Provisional
 1-309 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 581.48  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557   1 LTGLFLAMHYTSDTSTAFSSVTHICRDVNNGWLIRYLHANGASMFFICLFTHIGRGIYYGSYLFLETWNIGIILLFAVMA 80
Cdd:MTH00119  47 LTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMA 126

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557  81 TAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALTMVHLLFLHETGS 160
Cdd:MTH00119 127 TAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGS 206

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557 161 NNPSGLNSDADKIPFHPYYTVKDLLGVLILLLFLLLLTLFSPDLLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIP 240
Cdd:MTH00119 207 NNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIP 286

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 969943557 241 NKLGGVLALVFSILILAAFPLLHMSNQRSLMFRPLSQCMFWILVADLLILTWIGGQPVEHPF*IIGQLA 309
Cdd:MTH00119 287 NKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLA 355
CYTB MTH00131
cytochrome b; Provisional
 1-309 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 575.45  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557   1 LTGLFLAMHYTSDTSTAFSSVTHICRDVNNGWLIRYLHANGASMFFICLFTHIGRGIYYGSYLFLETWNIGIILLFAVMA 80
Cdd:MTH00131  46 LTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMM 125

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557  81 TAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALTMVHLLFLHETGS 160
Cdd:MTH00131 126 TAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGS 205

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557 161 NNPSGLNSDADKIPFHPYYTVKDLLGVLILLLFLLLLTLFSPDLLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIP 240
Cdd:MTH00131 206 NNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIP 285

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 969943557 241 NKLGGVLALVFSILILAAFPLLHMSNQRSLMFRPLSQCMFWILVADLLILTWIGGQPVEHPF*IIGQLA 309
Cdd:MTH00131 286 NKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVA 354
CYTB MTH00074
cytochrome b; Provisional
 1-309 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 559.30  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557   1 LTGLFLAMHYTSDTSTAFSSVTHICRDVNNGWLIRYLHANGASMFFICLFTHIGRGIYYGSYLFLETWNIGIILLFAVMA 80
Cdd:MTH00074  47 ITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMA 126

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557  81 TAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALTMVHLLFLHETGS 160
Cdd:MTH00074 127 TAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGS 206

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557 161 NNPSGLNSDADKIPFHPYYTVKDLLGVLILLLFLLLLTLFSPDLLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIP 240
Cdd:MTH00074 207 NNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIP 286

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 969943557 241 NKLGGVLALVFSILILAAFPLLHMSNQRSLMFRPLSQCMFWILVADLLILTWIGGQPVEHPF*IIGQLA 309
Cdd:MTH00074 287 NKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAA 355
CYTB MTH00191
cytochrome b; Provisional
 1-309 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 548.75  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557   1 LTGLFLAMHYTSDTSTAFSSVTHICRDVNNGWLIRYLHANGASMFFICLFTHIGRGIYYGSYLFLETWNIGIILLFAVMA 80
Cdd:MTH00191  43 LTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMA 122

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557  81 TAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALTMVHLLFLHETGS 160
Cdd:MTH00191 123 TAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGS 202

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557 161 NNPSGLNSDADKIPFHPYYTVKDLLGVLILLLFLLLLTLFSPDLLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIP 240
Cdd:MTH00191 203 NNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIP 282

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 969943557 241 NKLGGVLALVFSILILAAFPLLHMSNQRSLMFRPLSQCMFWILVADLLILTWIGGQPVEHPF*IIGQLA 309
Cdd:MTH00191 283 NKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANFILLTWLGGQPVEDPFILLGQIS 351
CYTB MTH00156
cytochrome b; Provisional
 1-308 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 542.07  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557   1 LTGLFLAMHYTSDTSTAFSSVTHICRDVNNGWLIRYLHANGASMFFICLFTHIGRGIYYGSYLFLETWNIGIILLFAVMA 80
Cdd:MTH00156  36 ITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMA 115

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557  81 TAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALTMVHLLFLHETGS 160
Cdd:MTH00156 116 TAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGS 195

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557 161 NNPSGLNSDADKIPFHPYYTVKDLLGVLILLLFLLLLTLFSPDLLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIP 240
Cdd:MTH00156 196 NNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIP 275

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 969943557 241 NKLGGVLALVFSILILAAFPLLHMSNQRSLMFRPLSQCMFWILVADLLILTWIGGQPVEHPF*IIGQL 308
Cdd:MTH00156 276 NKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQI 343
CYTB MTH00145
cytochrome b; Provisional
 1-307 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 511.37  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557   1 LTGLFLAMHYTSDTSTAFSSVTHICRDVNNGWLIRYLHANGASMFFICLFTHIGRGIYYGSYLFLETWNIGIILLFAVMA 80
Cdd:MTH00145  47 LTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMG 126

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557  81 TAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALTMVHLLFLHETGS 160
Cdd:MTH00145 127 TAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGS 206

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557 161 NNPSGLNSDADKIPFHPYYTVKDLLGVLILLLFLLLLTLFSPDLLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIP 240
Cdd:MTH00145 207 NNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIP 286

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 969943557 241 NKLGGVLALVFSILILAAFPLLHMSNQRSLMFRPLSQCMFWILVADLLILTWIGGQPVEHPF*IIGQ 307
Cdd:MTH00145 287 NKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNFFILTWIGACPVEEPYETIGQ 353
CYTB MTH00034
cytochrome b; Validated
 1-309 1.62e-179

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 500.39  E-value: 1.62e-179
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557   1 LTGLFLAMHYTSDTSTAFSSVTHICRDVNNGWLIRYLHANGASMFFICLFTHIGRGIYYGSYLFLETWNIGIILLFAVMA 80
Cdd:MTH00034  46 ITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTML 125

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557  81 TAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALTMVHLLFLHETGS 160
Cdd:MTH00034 126 TAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGS 205

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557 161 NNPSGLNSDADKIPFHPYYTVKDLLGVLILLLFLLLLTLFSPDLLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIP 240
Cdd:MTH00034 206 NNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIP 285

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 969943557 241 NKLGGVLALVFSILILAAFPLLHMSNQRSLMFRPLSQCMFWILVADLLILTWIGGQPVEHPF*IIGQLA 309
Cdd:MTH00034 286 NKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIATFFILTWIGSQPVEYPFILLGQVA 354
CYTB MTH00016
cytochrome b; Validated
 1-307 9.80e-173

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 483.41  E-value: 9.80e-173
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557   1 LTGLFLAMHYTSDTSTAFSSVTHICRDVNNGWLIRYLHANGASMFFICLFTHIGRGIYYGSYLFLETWNIGIILLFAVMA 80
Cdd:MTH00016  47 LTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMA 126

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557  81 TAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALTMVHLLFLHETGS 160
Cdd:MTH00016 127 TAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGS 206

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557 161 NNPSGLNSDADKIPFHPYYTVKDLLGVLILLLFLLLLTLFSPDLLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIP 240
Cdd:MTH00016 207 NNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIP 286

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 969943557 241 NKLGGVLALVFSILILAAFPLLHMSNQRSLMFRPLSQCMFWILVADLLILTWIGGQPVEHPF*IIGQ 307
Cdd:MTH00016 287 NKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQ 353
CYTB MTH00022
cytochrome b; Validated
 1-309 9.69e-154

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 435.28  E-value: 9.69e-154
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557   1 LTGLFLAMHYTSDTSTAFSSVTHICRDVNNGWLIRYLHANGASMFFICLFTHIGRGIYYGSYLFLETWNIGIILLFAVMA 80
Cdd:MTH00022  45 ITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMA 124

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557  81 TAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALTMVHLLFLHETGS 160
Cdd:MTH00022 125 TAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGS 204

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557 161 NNPSGLNSDADKIPFHPYYTVKDLLGVLILLLFLLLLTLFSPDLLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIP 240
Cdd:MTH00022 205 NNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIP 284

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 969943557 241 NKLGGVLALVFSILILAAFPLLHMSNQRSLMFRPLSQCMFWILVADLLILTWIGGQPVEHPF*IIGQLA 309
Cdd:MTH00022 285 NKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDFILLTWIGSQVVEEPFILIGQLL 353
CYTB MTH00053
cytochrome b; Provisional
 1-309 1.22e-151

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 429.90  E-value: 1.22e-151
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557   1 LTGLFLAMHYTSDTSTAFSSVTHICRDVNNGWLIRYLHANGASMFFICLFTHIGRGIYYGSYLFLETWNIGIILLFAVMA 80
Cdd:MTH00053  47 ITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMIL 126

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557  81 TAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALTMVHLLFLHETGS 160
Cdd:MTH00053 127 TAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGS 206

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557 161 NNPSGLNSDADKIPFHPYYTVKDLLGVLILLLFLLLLTLFSPDLLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIP 240
Cdd:MTH00053 207 NNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIP 286

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 969943557 241 NKLGGVLALVFSILILAAFPLLHMSNQRSLMFRPLSQCMFWILVADLLILTWIGGQPVEHPF*IIGQLA 309
Cdd:MTH00053 287 NKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIA 355
CYTB MTH00224
cytochrome b; Provisional
 1-308 7.89e-151

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 427.80  E-value: 7.89e-151
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557   1 LTGLFLAMHYTSDTSTAFSSVTHICRDVNNGWLIRYLHANGASMFFICLFTHIGRGIYYGSYLFLETWNIGIILLFAVMA 80
Cdd:MTH00224  47 LTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMA 126

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557  81 TAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALTMVHLLFLHETGS 160
Cdd:MTH00224 127 TAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGS 206

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557 161 NNPSGLNSDADKIPFHPYYTVKDLLGVLILLLFLLLLTLFSPDLLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIP 240
Cdd:MTH00224 207 NNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIP 286

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 969943557 241 NKLGGVLALVFSILILAAFPLLHMSNQRSLMFRPLSQCMFWILVADLLILTWIGGQPVEHPF*IIGQL 308
Cdd:MTH00224 287 NKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQV 354
CYTB MTH00033
cytochrome b; Provisional
 1-309 1.03e-114

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 336.14  E-value: 1.03e-114
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557   1 LTGLFLAMHYTSDTSTAFSSVTHICRDVNNGWLIRYLHANGASMFFICLFTHIGRGIYYGSYLFLETWNIGIILLFAVMA 80
Cdd:MTH00033  43 LTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMML 122

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557  81 TAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALTMVHLLFLHETGS 160
Cdd:MTH00033 123 TAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGS 202

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557 161 NNPSGLNSDADKIPFHPYYTVKDLLGVLILLLFLLLLTLFS--PDLLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRS 238
Cdd:MTH00033 203 NEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRS 282

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 969943557 239 IPNKLGGVLALVFSILILAAFPLLHMSNQRSLMFRPLSQCMFWILVADLLILTWIGGQPV-EHPF*IIGQLA 309
Cdd:MTH00033 283 IPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILTWIGSAPAgADPYVLIGRIA 354
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-309 3.96e-112

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 329.83  E-value: 3.96e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557   1 LTGLFLAMHYTSDTSTAFSSVTHICRDVNNGWLIRYLHANGASMFFICLFTHIGRGIYYGSY-----LfleTWNIGIILL 75
Cdd:COG1290   55 LTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYkkpreL---NWIIGVLLL 131

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557  76 FAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFH-FILPFIVAALTMVHLLF 154
Cdd:COG1290  132 LLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWL 211

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557 155 LHETGSNNPSG----LNSDADKIPFHPYYTVKDLLGVLILLLFLLLLTLFSPDllGDPDNYIPANPLNTPPHIKPEWYFL 230
Cdd:COG1290  212 LHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFL 289

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557 231 FAYAILRSIP--NKLGGVLALVFSILILAAFPLLHMSNQRSLMFRPLSQCMFWILVADLLILTWIGGQPVehPF*IIGQL 308
Cdd:COG1290  290 PFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP--IATLLGSI 367


                 .
gi 969943557 309 A 309
Cdd:COG1290  368 N 368
CYTB MTH00086
cytochrome b; Provisional
 1-308 2.65e-106

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 313.80  E-value: 2.65e-106
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557   1 LTGLFLAMHYTSDTSTAFSSVTHICRDVNNGWLIRYLHANGASMFFICLFTHIGRGIYYGSYLFLETWNIGIILLFAVMA 80
Cdd:MTH00086  35 LTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMM 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557  81 TAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALTMVHLLFLHETGS 160
Cdd:MTH00086 115 EAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGS 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557 161 NNPSGLNSDADKIPFHPYYTVKDlLGVLILLLFLLLLTLFSPDLLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIP 240
Cdd:MTH00086 195 TSSLYCHGDYDKICFGPEYWNKD-AYNIIFWLVFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIP 273

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 969943557 241 NKLGGVLALVFSILILAAFPLLhmsNQRSLMFRPLSQCMFWILVADLLILTWIGGQPVEHPF*IIGQL 308
Cdd:MTH00086 274 NKVLGVIALLMSIVVFYFFIFV---NNYTSCLNKLNKFLVFSFIVVNVILSWLGQCLVEYPFLFLSQI 338
CYTB MTH00046
cytochrome b; Validated
 1-308 1.82e-84

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 257.99  E-value: 1.82e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557   1 LTGLFLAMHYTSDTSTAFSSVTHICRDVNNGWLIRYLHANGASMFFICLFTHIGRGIYYGSYLFLETWNIGIILLFAVMA 80
Cdd:MTH00046  37 LTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMV 116

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557  81 TAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALTMVHLLFLHETGS 160
Cdd:MTH00046 117 EAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGS 196

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557 161 NNP-SGLNSDADKIPFHPYYTVKDLLGVLILLLFLLLLTLFSPDLLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSI 239
Cdd:MTH00046 197 SNPlFSSNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSI 276

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 969943557 240 PNKLGGvLALVFSILILAAFPllhmSNQRSLMFRPLSQCMFWILVADLLILTWIGGQPVEHPF*IIGQL 308
Cdd:MTH00046 277 NSKIGG-LVLVLSFLFFLWVP----TFNGSSVYSVWRQVNFWLIVSLFFSLSYLGGCHPEYPYLLISQL 340
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-161 2.24e-79

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 239.58  E-value: 2.24e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557   1 LTGLFLAMHYTSDTSTAFSSVTHICRDVNNGWLIRYLHANGASMFFICLFTHIGRGIYYGSY--LFLETWNIGIILLFAV 78
Cdd:cd00284   38 LTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLT 117

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557  79 MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALTMVHLLFLHET 158
Cdd:cd00284  118 MATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQ 197


                 ...
gi 969943557 159 GSN 161
Cdd:cd00284  198 GSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-159 7.84e-74

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 224.95  E-value: 7.84e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557    1 LTGLFLAMHYTSDTSTAFSSVTHICRDVNNGWLIRYLHANGASMFFICLFTHIGRGIYYG--SYLFLETWNIGIILLFAV 78
Cdd:pfam00033  29 LTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVILLVLT 108

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557   79 MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALTMVHLLFLHET 158
Cdd:pfam00033 109 MSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHET 188


                  .
gi 969943557  159 G 159
Cdd:pfam00033 189 G 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 162-309 5.37e-54

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 172.83  E-value: 5.37e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557 162 NPSGLNSDADKIPFHPYYTVKDLLGVLILLLFLLLLTLFSPDLLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIPN 241
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 969943557 242 KLGGVLALVFSILILAAFPLLHMSNQRSlMFRPLSQCMFWILVADLLILTWIGGQPVEHPF*IIGQLA 309
Cdd:cd00290   81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
213-309 5.25e-46

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 150.71  E-value: 5.25e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557  213 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVFSILILAAFPLLHMSNQRSLMFRPLSQCMFWILVADLLILTW 292
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90
                  ....*....|....*..
gi 969943557  293 IGGQPVEHPF*IIGQLA 309
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIA 97
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
43-208 7.00e-43

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 145.08  E-value: 7.00e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557   43 SMFFICLFTHIGRGIYYGSYLFLE--TWNIGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIW 120
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557  121 GGFSVDKATLTRFFAFHF-ILPFIVAALTMVHLLFLHETGSNNPSGLNSDADKIPFHPYYTVKDLLGVLILLLFLLLLTL 199
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 969943557  200 FSPDLLGDP 208
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 1-163 2.06e-34

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 124.82  E-value: 2.06e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557   1 LTGLFLAMHYTSDTSTAFSSVTHICRDVNNGWLIRYLHANGASMFFICLFTHIGRGIYYGSYLFLE--TWNIGIILLFAV 78
Cdd:PRK03735  57 LSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRelNWVVGVLIFFVT 136

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557  79 MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFH-FILPFIVAALTMVHLLFLHE 157
Cdd:PRK03735 137 VGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMIRK 216


                 ....*.
gi 969943557 158 TGSNNP 163
Cdd:PRK03735 217 QGISGP 222
petB CHL00070
cytochrome b6
 2-164 4.77e-30

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 113.28  E-value: 4.77e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557   2 TGLFLAMHYTSDTSTAFSSVTHICRDVNNGWLIRYLHANGASMFFICLFTHIGRGIYYGSYLFLE--TWNIGIILLFAVM 79
Cdd:CHL00070  50 TGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRelTWVTGVVLAVLTV 129

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557  80 ATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFH-FILPFIVAALTMVHLLFLHET 158
Cdd:CHL00070 130 SFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLMIRKQ 209


                 ....*.
gi 969943557 159 GSNNPS 164
Cdd:CHL00070 210 GISGPL 215
petD CHL00058
cytochrome b6/f complex subunit IV
 213-282 2.06e-10

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 58.47  E-value: 2.06e-10
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 969943557 213 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVFSILILAAFPLLHMSNQRSLMF-RPLSQCMFWI 282
Cdd:CHL00058  65 PADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLENVNKFQNPFrRPVATTVFLI 135
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 213-294 9.56e-10

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 56.34  E-value: 9.56e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557 213 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVFSILILAAFPLLHMSNQRSLMF-RPLSQCMFWIlvaDLLILT 291
Cdd:COG5679   66 PADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENVNKFQNPFrRPVATAVFLF---GTLVTL 142


                 ...
gi 969943557 292 WIG 294
Cdd:COG5679  143 WLG 145
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 213-294 2.17e-08

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 52.49  E-value: 2.17e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 969943557  213 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVFSILILAAFPLLHMSNQRSLMF-RPLSQCMFWIlvaDLLILT 291
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFrRPVATTVFLF---GTVVAL 141


                  ...
gi 969943557  292 WIG 294
Cdd:TIGR01156 142 WLG 144
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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