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Conserved domains on  [gi|972903516|gb|ALW82780|]
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NADH dehydrogenase subunit 1, partial (mitochondrion) [Plestiodon tetragrammus]

Protein Classification

complex I subunit 1 family protein( domain architecture ID 103)

complex I subunit 1 family protein similar to NADH dehydrogenase subunit 1, which is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

EC:  7.1.1.-
Gene Ontology:  GO:0016655|GO:0016020
PubMed:  23417064|24059520
SCOP:  4005664

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK06076 super family cl00469
NADH-quinone oxidoreductase subunit NuoH;
1-114 2.30e-70

NADH-quinone oxidoreductase subunit NuoH;


The actual alignment was detected with superfamily member MTH00111:

Pssm-ID: 469782  Cd Length: 323  Bit Score: 212.83  E-value: 2.30e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 972903516   1 GESELVSGFNVEYAAGPFALFFLAEYANILMMNTLTCILFINPGMTTH-PDTFPMNLMLKASALTILFLWTRASYPRFRY 79
Cdd:MTH00111 208 GESELVSGFNVEYAAGPFALFFLAEYANILLMNTLTTILFLNPSTLNLpPELFTINLMTKTLLLTSGFLWIRASYPRFRY 287

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 972903516  80 DQLMHLLWKNFLPITLALFLWHTSFPTMLSGLPPQ 114
Cdd:MTH00111 288 DQLMHLLWKQFLPLTLALCLWHTSMPISLAGLPPQ 322
 
Name Accession Description Interval E-value
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 1-114 2.30e-70

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 212.83  E-value: 2.30e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 972903516   1 GESELVSGFNVEYAAGPFALFFLAEYANILMMNTLTCILFINPGMTTH-PDTFPMNLMLKASALTILFLWTRASYPRFRY 79
Cdd:MTH00111 208 GESELVSGFNVEYAAGPFALFFLAEYANILLMNTLTTILFLNPSTLNLpPELFTINLMTKTLLLTSGFLWIRASYPRFRY 287

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 972903516  80 DQLMHLLWKNFLPITLALFLWHTSFPTMLSGLPPQ 114
Cdd:MTH00111 288 DQLMHLLWKQFLPLTLALCLWHTSMPISLAGLPPQ 322
NADHdh pfam00146
NADH dehydrogenase;
1-100 4.49e-32

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 114.11  E-value: 4.49e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 972903516    1 GESELVSGFNVEYAAGPFALFFLAEYANILMMNTLTCILFINPGMTTHPDTFPMNLMLKASALTILFLWTRASYPRFRYD 80
Cdd:pfam00146 201 AESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLGGWLGPFPLPGLLWFLLKVFFVFFLFIWIRATLPRFRYD 280

                          90       100
                  ....*....|....*....|
gi 972903516   81 QLMHLLWKNFLPITLALFLW 100
Cdd:pfam00146 281 QLMRLGWKVLLPLSLANLLL 300
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 1-100 1.48e-28

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 105.21  E-value: 1.48e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 972903516   1 GESELVSGFNVEYAAGPFALFFLAEYANILMMNTLTCILFI----NPGMTTHPDTFP--MNLMLKASALTILFLWTRASY 74
Cdd:COG1005  215 AESELVAGYHTEYSGMKFALFFLAEYANMFLVSALATTLFLggwlGPFPILPLGGLPgiLWFLLKTLFFIFFFIWVRATL 294

                         90       100
                 ....*....|....*....|....*.
gi 972903516  75 PRFRYDQLMHLLWKNFLPITLALFLW 100
Cdd:COG1005  295 PRYRYDQLMRLGWKVLLPLSLVNLVL 320
 
Name Accession Description Interval E-value
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 1-114 2.30e-70

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 212.83  E-value: 2.30e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 972903516   1 GESELVSGFNVEYAAGPFALFFLAEYANILMMNTLTCILFINPGMTTH-PDTFPMNLMLKASALTILFLWTRASYPRFRY 79
Cdd:MTH00111 208 GESELVSGFNVEYAAGPFALFFLAEYANILLMNTLTTILFLNPSTLNLpPELFTINLMTKTLLLTSGFLWIRASYPRFRY 287

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 972903516  80 DQLMHLLWKNFLPITLALFLWHTSFPTMLSGLPPQ 114
Cdd:MTH00111 288 DQLMHLLWKQFLPLTLALCLWHTSMPISLAGLPPQ 322
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
 1-114 2.74e-63

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 194.84  E-value: 2.74e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 972903516   1 GESELVSGFNVEYAAGPFALFFLAEYANILMMNTLTCILFINPGM-TTHPDTFPMNLMLKASALTILFLWTRASYPRFRY 79
Cdd:MTH00071 208 GESELVSGFNVEYAGGPFALFFLAEYANILMMNTLSTILFLGSTYnHLQPELSTMNLMIKASILSMLFLWVRASYPRFRY 287

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 972903516  80 DQLMHLLWKNFLPITLALFLWHTSFPTMLSGLPPQ 114
Cdd:MTH00071 288 DQLMHLVWKNFLPITLAMTIFHISLPISTLGIPPM 322
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 1-114 3.22e-61

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 189.43  E-value: 3.22e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 972903516   1 GESELVSGFNVEYAAGPFALFFLAEYANILMMNTLTCILFINpgmTTHPDTFP----MNLMLKASALTILFLWTRASYPR 76
Cdd:MTH00134 209 GESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSAILFLG---ASHIPTLPelttINLMTKAALLSVVFLWVRASYPR 285

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 972903516  77 FRYDQLMHLLWKNFLPITLALFLWHTSFPTMLSGLPPQ 114
Cdd:MTH00134 286 FRYDQLMHLVWKNFLPLTLALVIWHLALPIAFAGLPPQ 323
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 1-114 4.01e-59

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 184.06  E-value: 4.01e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 972903516   1 GESELVSGFNVEYAAGPFALFFLAEYANILMMNTLTCILFINPGMTTH-PDTFPMNLMLKASALTILFLWTRASYPRFRY 79
Cdd:MTH00104 203 GESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTILFLGAFHNPYmPELYTTNFTIKTLLLTILFLWIRASYPRFRY 282

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 972903516  80 DQLMHLLWKNFLPITLALFLWHTSFPTMLSGLPPQ 114
Cdd:MTH00104 283 DQLMHLLWKNFLPLTLALCMWHISLPIMTASIPPQ 317
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
 1-113 6.22e-47

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 152.76  E-value: 6.22e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 972903516   1 GESELVSGFNVEYAAGPFALFFLAEYANILMMNTLTCILFINPGMTThpdtfpMNLMLKASALTILFLWTRASYPRFRYD 80
Cdd:MTH00218 205 GESELVSGFNVEYSGGPFALFFLAEYMNILFMNTLSVILFLGTSLTT------INLMLKATLLVFLFLWVRASLPRFRYD 278

                         90       100       110
                 ....*....|....*....|....*....|...
gi 972903516  81 QLMHLLWKNFLPITLALFLWHTSFPTMLSGLPP 113
Cdd:MTH00218 279 QLMHLAWKNFLPLSLALLLLHTSLPLSFASLPP 311
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
 1-113 4.18e-45

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 148.20  E-value: 4.18e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 972903516   1 GESELVSGFNVEYAAGPFALFFLAEYANILMMNTLTCILFINPGmTTHPDTFPMNLM---LKASALTILFLWTRASYPRF 77
Cdd:MTH00040 207 GESELVSGYNVEYAGGPFALFFIAEYANIIFMNLLSVILFLGGG-SPFNEIFPINIIivgIKTTFLVFLFLWVRASYPRF 285

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 972903516  78 RYDQLMHLLWKNFLPITLALFLWHTSFPTMLSGLPP 113
Cdd:MTH00040 286 RYDQLMFLTWKNYLPLSIGLLIFYLLLLSLLNILPP 321
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
 1-99 1.91e-34

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 120.36  E-value: 1.91e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 972903516   1 GESELVSGFNVEYAAGPFALFFLAEYANILMMNTLTCILFINpGMTTHPDTFPMNLMLKASALTILFLWTRASYPRFRYD 80
Cdd:MTH00143 204 GESELVSGFNVEYGGGGFALLFLAEYANILFMSLLTVVLFFG-GSSVLFLLGGVVFMFKVLFFAFLFIWVRASYPRFRYD 282

                         90
                 ....*....|....*....
gi 972903516  81 QLMHLLWKNFLPITLALFL 99
Cdd:MTH00143 283 LLMMLCWKSFLPFSLSILV 301
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
 1-110 1.51e-33

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 117.92  E-value: 1.51e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 972903516   1 GESELVSGFNVEYAAGPFALFFLAEYANILMMNTLTCILFINPGMTthpdtfpMNLMLKASALTILFLWTRASYPRFRYD 80
Cdd:MTH00195 205 GESELVSGFNVEYAGGPFALIFMAEYSNIIFMSVLTTILFLGGGGT-------IIVALKSLFLSFCFLWVRGSLPRFRYD 277

                         90       100       110
                 ....*....|....*....|....*....|
gi 972903516  81 QLMHLLWKNFLPITLALFLWHTSFPTMLSG 110
Cdd:MTH00195 278 QLMHLTWKCYLPLILSLLIPLAAIPFALNS 307
NADHdh pfam00146
NADH dehydrogenase;
1-100 4.49e-32

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 114.11  E-value: 4.49e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 972903516    1 GESELVSGFNVEYAAGPFALFFLAEYANILMMNTLTCILFINPGMTTHPDTFPMNLMLKASALTILFLWTRASYPRFRYD 80
Cdd:pfam00146 201 AESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLGGWLGPFPLPGLLWFLLKVFFVFFLFIWIRATLPRFRYD 280

                          90       100
                  ....*....|....*....|
gi 972903516   81 QLMHLLWKNFLPITLALFLW 100
Cdd:pfam00146 281 QLMRLGWKVLLPLSLANLLL 300
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
 1-113 6.32e-32

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 114.05  E-value: 6.32e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 972903516   1 GESELVSGFNVEYAAGPFALFFLAEYANILMMNTLTCILFI----NPGMTTHPDTFPMNLMLKASALTILFLWTRASYPR 76
Cdd:MTH00054 207 GESELVSGFNVEYSSMSFALFFLAEYCHIILMSTFGVILFLggwlVISGPTSYFSNFVWFGIKIALIIFLFIWIRASYPR 286

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 972903516  77 FRYDQLMHLLWKNFLPITLALFLWHTSFPTMLSGLPP 113
Cdd:MTH00054 287 IRYDQLMALLWKSYLPLSLAFVVLVSGILIGFNALPP 323
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
 1-113 1.17e-31

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 113.29  E-value: 1.17e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 972903516   1 GESELVSGFNVEYAAGPFALFFLAEYANILMMNTLTCILFINPGMTTHPDTFPMNLM--LKASALTILFLWTRASYPRFR 78
Cdd:MTH00216 212 GESELVSGYNVEYASMSFALFFLAEYAHIILMSCLTTILFLGGWLSPIKYFKGGAGWfgLKVVFIIFLFIWVRASFPRIR 291

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 972903516  79 YDQLMHLLWKNFLPITLALFLWHTSFPTMLSGLPP 113
Cdd:MTH00216 292 YDQLMALLWKSYLPLSLGVVIFVASVLFGFNGPPP 326
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
 1-104 3.92e-31

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 111.67  E-value: 3.92e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 972903516   1 GESELVSGFNVEYAAGPFALFFLAEYANILMMNTLTCILFINPGMtthpDTFPMNLMLKASALTILFLWTRASYPRFRYD 80
Cdd:MTH00225 204 GESELVSGFNIEYSSGGFALIFMAEYGSILFMSMLTSILFFGGFF----VTIDLFLILKIMLLAFWFIWVRGVLPRMRYD 279

                         90       100
                 ....*....|....*....|....
gi 972903516  81 QLMHLLWKNFLPITLALFLWHTSF 104
Cdd:MTH00225 280 KLMSLTWKSFLPLSLAYLFMVLII 303
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 1-108 3.18e-30

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 109.09  E-value: 3.18e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 972903516   1 GESELVSGFNVEYAAGPFALFFLAEYANILMMNTLTCILFINpgmtthPDTFPMNLMLKASALTILFLWTRASYPRFRYD 80
Cdd:MTH00193 205 GESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLFVLMFLG------GDLLSLLFYLKLLFISFLFIWVRGTLPRFRYD 278

                         90       100
                 ....*....|....*....|....*...
gi 972903516  81 QLMHLLWKNFLPITLALFLWHTSFPTML 108
Cdd:MTH00193 279 KLMYLAWKSFLPLSLNYLLFFFGLKIFL 306
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 1-100 1.48e-28

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 105.21  E-value: 1.48e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 972903516   1 GESELVSGFNVEYAAGPFALFFLAEYANILMMNTLTCILFI----NPGMTTHPDTFP--MNLMLKASALTILFLWTRASY 74
Cdd:COG1005  215 AESELVAGYHTEYSGMKFALFFLAEYANMFLVSALATTLFLggwlGPFPILPLGGLPgiLWFLLKTLFFIFFFIWVRATL 294

                         90       100
                 ....*....|....*....|....*.
gi 972903516  75 PRFRYDQLMHLLWKNFLPITLALFLW 100
Cdd:COG1005  295 PRYRYDQLMRLGWKVLLPLSLVNLVL 320
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
 1-113 1.49e-26

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 100.48  E-value: 1.49e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 972903516   1 GESELVSGFNVEYAAGPFALFFLAEYANILMMNTLTCILFIN---PGMTTHPDTFPMNLML--------------KASAL 63
Cdd:MTH00029 212 GESELVSGFNVEYSSLSFALFFLAEYSNIILMSCMMTIFFLGgwlSPLDGIPTPPEAFSIFeqiasskssfwfftKSSIF 291

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 972903516  64 TILFLWTRASYPRFRYDQLMHLLWKNFLPITLALFLWHTSFPTMLSGLPP 113
Cdd:MTH00029 292 ILFFIWSRASFPRIRYDQLMKLLWKTYLPLSLGLVILTAGILIGFNGVPP 341
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
 1-108 3.71e-26

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 98.70  E-value: 3.71e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 972903516   1 GESELVSGFNVEYAAGPFALFFLAEYANILMMNTLTCILFinpgMTTHPDTF--PMNLMLKASALTILFLWTRASYPRFR 78
Cdd:MTH00010 205 GESELVSGFNVEYSSGLFALIFMAEYANILIMSLFTSVFF----TSFIPSIFisDLMLILKTVFLAFLFIWIRATFPRMR 280

                         90       100       110
                 ....*....|....*....|....*....|
gi 972903516  79 YDQLMHLLWKNFLPITLALFLWHTSFPTML 108
Cdd:MTH00010 281 YDRLMNLTWKSFLPMSLTSLMISIPIMFLL 310
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
1-100 1.23e-25

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 97.57  E-value: 1.23e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 972903516   1 GESELVSGFNVEYAAGPFALFFLAEYANILMMNTLTCILFIN-----PGMTTHPDTFPMnLMLKASALTILFLWTRASYP 75
Cdd:PRK06076 215 AESELVAGYHTEYSGMKFGLFFLGEYINMILVSALITTLFLGgwlppFPLGGGIPGAIW-FVLKVAFFVFLFIWLRATLP 293

                         90       100
                 ....*....|....*....|....*
gi 972903516  76 RFRYDQLMHLLWKNFLPITLALFLW 100
Cdd:PRK06076 294 RYRYDQLMRLGWKVLLPLSLVNLLL 318
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
 1-99 5.13e-18

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 76.48  E-value: 5.13e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 972903516   1 GESELVSGFNVEYAAGPFALFFLAEYANILMMNTLTCILFinpgmtthpdtFPMNLMLKASALTILfLWTRASYPRFRYD 80
Cdd:MTH00090 191 GESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLF-----------FKFSFLMLFLIFSLL-IFIRSSYPRFRYD 258

                         90
                 ....*....|....*....
gi 972903516  81 QLMHLLWKNFLPITLALFL 99
Cdd:MTH00090 259 MMMSMFWFKFLPLSLIFLG 277
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
 2-99 3.51e-12

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 60.71  E-value: 3.51e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 972903516   2 ESELVSGFNVEYAAGPFALFFLAEYANILMMNTLTCILFINPGMtthpdtfpmnLMLKASALTILFLWTRASYPRFRYDQ 81
Cdd:MTH00058 203 ESELVSGFNTEYSGIYFTCLFACEYLIIFIFSWLGSVLFFGGGF----------VSIMLLFHLLFFMWARATLPRVRYDY 272

                         90
                 ....*....|....*...
gi 972903516  82 LMHLLWKNFLPITLALFL 99
Cdd:MTH00058 273 FVNFFWEYCLVLLILSLF 290
ndhA CHL00032
NADH dehydrogenase subunit 1
 2-104 3.40e-11

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 58.42  E-value: 3.40e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 972903516   2 ESELVSGFNVEYAAGPFALFFLAEYANILMMNTLTCILF-----INPGMTTHPDTFPMNLMLKASALTI----------L 66
Cdd:CHL00032 237 EEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYlggwnLSIPYIFIPELFEINKTGGVFGTTIgifitlaktyL 316

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 972903516  67 FLW----TRASYPRFRYDQLMHLLWKNFLPITLALFLWHTSF 104
Cdd:CHL00032 317 FLFisitTRWTLPRLRMDQLLNLGWKFLLPISLGNLLLTTSF 358
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
2-100 3.78e-06

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 44.02  E-value: 3.78e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 972903516   2 ESELVSGFNVEYAAGPFALFFLAEYANILMMNTLTCILFINPGMTTHPDTFPMNLMLKASALTILFLWTRASYPRFRYDQ 81
Cdd:COG0650  203 HLELHEGMLLEYSGRHLALLELAAALKLFVLLSLFVNLFLPWGIALTLLLALLLFLLKLLVLAVLLAVIEASTARLRLFR 282

                         90
                 ....*....|....*....
gi 972903516  82 LMHLLWKNFLPITLALFLW 100
Cdd:COG0650  283 VPDFLWTAFLLALLALLLA 301
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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