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Conserved domains on  [gi|984293521|gb|AMB51081|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Metallura tyrianthina tyrianthina]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
1-275 1.00e-137

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 391.88  E-value: 1.00e-137
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521   1 LTFSLSLMLGTTITISSNHWMTAWTGLEINTLAIIPLISKSHHPRAIEAAIKYFLTQAAASTLLLFSSMINAWHTGQWDI 80
Cdd:MTH00112   7 LIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDI 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521  81 TQLNHPMSSLLLTTAIAMKLGLVPFHFWFPEVLQGSPLTTAMLLSTVMKFPPITILLLTSHSLNPTLLTTMAIASAALGG 160
Cdd:MTH00112  87 TQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGG 166
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521 161 WMGLNQTQIRKVLAFSSISHLGWMCIILIYAPKLTLTTFYIYCTMTGAIFLTLDTTKSLKLSTMMTSWTKAPMLNTTLMM 240
Cdd:MTH00112 167 WGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLML 246
                        250       260       270
                 ....*....|....*....|....*....|....*
gi 984293521 241 TLLSLAGLPPLTGFLPKWLIIQELSKQEMTAPATI 275
Cdd:MTH00112 247 TLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATI 281
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
1-275 1.00e-137

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 391.88  E-value: 1.00e-137
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521   1 LTFSLSLMLGTTITISSNHWMTAWTGLEINTLAIIPLISKSHHPRAIEAAIKYFLTQAAASTLLLFSSMINAWHTGQWDI 80
Cdd:MTH00112   7 LIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDI 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521  81 TQLNHPMSSLLLTTAIAMKLGLVPFHFWFPEVLQGSPLTTAMLLSTVMKFPPITILLLTSHSLNPTLLTTMAIASAALGG 160
Cdd:MTH00112  87 TQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGG 166
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521 161 WMGLNQTQIRKVLAFSSISHLGWMCIILIYAPKLTLTTFYIYCTMTGAIFLTLDTTKSLKLSTMMTSWTKAPMLNTTLMM 240
Cdd:MTH00112 167 WGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLML 246
                        250       260       270
                 ....*....|....*....|....*....|....*
gi 984293521 241 TLLSLAGLPPLTGFLPKWLIIQELSKQEMTAPATI 275
Cdd:MTH00112 247 TLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATI 281
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
3-275 2.51e-34

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 129.08  E-value: 2.51e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521   3 FSLSLM--LGTTITISSNHWMTAWTGLEINTLAIIPLIS-KSHHPRAIEAAIKYFLTQAAASTLLLF-SSMINAWhTGQW 78
Cdd:COG1007  105 YALLLFatLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSL 183
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521  79 DITQL-----NHPMSSLLLTTAIAM-------KLGLVPFHFWFPEVLQGSPLTTAMLLSTVMK----FPPITILLLTSHS 142
Cdd:COG1007  184 NLAGIaaalaAGGANSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaafAALLRLLVEAFPG 263
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521 143 LNP---TLLTTMAIASAALGGWMGLNQTQIRKVLAFSSISHLGWMCIILIYAPKLTLTT--FY--IYCTMTGAIFLTLDT 215
Cdd:COG1007  264 LAAdwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVSAalFYllAYLFMNLGAFAVILL 343
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 984293521 216 -TKSLKLSTMMTSW----TKAPMLNTTLMMTLLSLAGLPPLTGFLPKWLIIQELSKQEMTAPATI 275
Cdd:COG1007  344 lSRKGGEAEEIEDLaglaRRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVI 408
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
17-262 2.85e-31

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 117.41  E-value: 2.85e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521   17 SNHWMTAWTGLEINTLAIIPLI-SKSHHPRAIEAAIKYFLTQAAASTLLLFSSMINAWHTGQWDITQL-----------N 84
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521   85 HPMSSLLLTTAIAMKLGLVPFHFWFPEVLQGSPLTTAMLLSTVMKFPPITILLLTSHSLNPT------LLTTMAIASAAL 158
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSspfiqqILLILAIISMLL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521  159 GGWMGLNQTQIRKVLAFSSISHLGWMCIIL----IYAPKLTLTTFYIYCTMTGAIFL-----TLDTTKSLKLSTMMTSWT 229
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240
                         250       260       270
                  ....*....|....*....|....*....|...
gi 984293521  230 KAPMLNTTLMMTLLSLAGLPPLTGFLPKWLIIQ 262
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
9-269 4.66e-25

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 103.49  E-value: 4.66e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521    9 LGTTITISSNHWMTAWTGLEINTLAIIPLIS-KSHHPRAIEAAIKYFLTQAAASTLLLFSSMINAWHTGQWDITQLNHPM 87
Cdd:TIGR01770 113 LGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFL 192
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521   88 SS------------LLLTTAIAMKLGLVPFHFWFPEVLQGSPLTTAMLLSTVMK---FPPITILLLTS----HSLNPTLL 148
Cdd:TIGR01770 193 SNgmlnisllllgiVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaiFAVFLRLFLYIlfgfSEAWQIFL 272
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521  149 TTMAIASAALGGWMGLNQTQIRKVLAFSSISHLGW--MCIILIYAPKLTLTTFY--IYCTMTGAIFLTLDTTKSLK---- 220
Cdd:TIGR01770 273 AIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYilIGLLAGTLEGIKAVLFYifIYALMSLGAFGVLSLLRSYKdewi 352
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 984293521  221 --LSTMMTSWTKAPMLNTTLMMTLLSLAGLPPLTGFLPKWLIIQELSKQEM 269
Cdd:TIGR01770 353 eyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGL 403
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
1-275 1.00e-137

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 391.88  E-value: 1.00e-137
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521   1 LTFSLSLMLGTTITISSNHWMTAWTGLEINTLAIIPLISKSHHPRAIEAAIKYFLTQAAASTLLLFSSMINAWHTGQWDI 80
Cdd:MTH00112   7 LIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDI 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521  81 TQLNHPMSSLLLTTAIAMKLGLVPFHFWFPEVLQGSPLTTAMLLSTVMKFPPITILLLTSHSLNPTLLTTMAIASAALGG 160
Cdd:MTH00112  87 TQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGG 166
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521 161 WMGLNQTQIRKVLAFSSISHLGWMCIILIYAPKLTLTTFYIYCTMTGAIFLTLDTTKSLKLSTMMTSWTKAPMLNTTLMM 240
Cdd:MTH00112 167 WGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLML 246
                        250       260       270
                 ....*....|....*....|....*....|....*
gi 984293521 241 TLLSLAGLPPLTGFLPKWLIIQELSKQEMTAPATI 275
Cdd:MTH00112 247 TLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATI 281
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
2-275 2.25e-117

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 340.24  E-value: 2.25e-117
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521   2 TFSLSLMLGTTITISSNHWMTAWTGLEINTLAIIPLISKSHHPRAIEAAIKYFLTQAAASTLLLFSSMINAWHTGQWDIT 81
Cdd:MTH00135   8 ILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGQWDIQ 87
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521  82 QLNHPMSSLLLTTAIAMKLGLVPFHFWFPEVLQGSPLTTAMLLSTVMKFPPItILLLTSHSLNPTLLTTMAIASAALGGW 161
Cdd:MTH00135  88 QMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPF-ALILQIAPTNPTLLITLGLTSTLVGGW 166
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521 162 MGLNQTQIRKVLAFSSISHLGWMCIILIYAPKLTLTTFYIYCTMTGAIFLTLDTTKSLKLSTMMTSWTKAPMLNTTLMMT 241
Cdd:MTH00135 167 GGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPLI 246
                        250       260       270
                 ....*....|....*....|....*....|....
gi 984293521 242 LLSLAGLPPLTGFLPKWLIIQELSKQEMTAPATI 275
Cdd:MTH00135 247 LLSLGGLPPLTGFMPKWLILQELTKQDLPLTATL 280
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
6-275 3.78e-112

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 326.88  E-value: 3.78e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521   6 SLMLGTTITISSNHWMTAWTGLEINTLAIIPLISKSHHPRAIEAAIKYFLTQAAASTLLLFSSMINAWHTGQWDITQLNH 85
Cdd:MTH00070  12 SLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTGEWTIMNMQT 91
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521  86 PMSSLLLTTAIAMKLGLVPFHFWFPEVLQGSPLTTAMLLSTVMKFPPITILLLTSHSLNPTLLTTMAIASAALGGWMGLN 165
Cdd:MTH00070  92 PLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLLSTLIGGWGGLN 171
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521 166 QTQIRKVLAFSSISHLGWMCIILIYAPKLTLTTFYIYCTMTGAIFLTLDTTKSLKLSTMMTSWTKAPMLNTTLMMTLLSL 245
Cdd:MTH00070 172 QTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLTLLSL 251
                        250       260       270
                 ....*....|....*....|....*....|
gi 984293521 246 AGLPPLTGFLPKWLIIQELSKQEMTAPATI 275
Cdd:MTH00070 252 GGLPPTTGFIPKWLILQELTKQNLTTLATL 281
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
1-275 1.22e-102

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 302.92  E-value: 1.22e-102
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521   1 LTFSLSLMLGTTITISSNHWMTAWTGLEINTLAIIPLISKSHHPRAIEAAIKYFLTQAAASTLLLFSSMINAWHTGQWDI 80
Cdd:MTH00105   7 IIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYSGQWTI 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521  81 TQLNHPMSSLLLTTAIAMKLGLVPFHFWFPEVLQGSPLTTAMLLSTVMKFPPITILLLTSHSLNPTLLTTMAIASAALGG 160
Cdd:MTH00105  87 TKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAILSILIGG 166
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521 161 WMGLNQTQIRKVLAFSSISHLGWMCIILIYAPKLTLTTFYIYCTMTGAIFLTLDTTKSLKLSTMMTSWTKAPMLNTTLMM 240
Cdd:MTH00105 167 WGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLILL 246
                        250       260       270
                 ....*....|....*....|....*....|....*
gi 984293521 241 TLLSLAGLPPLTGFLPKWLIIQELSKQEMTAPATI 275
Cdd:MTH00105 247 TLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTL 281
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
1-275 5.60e-86

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 260.29  E-value: 5.60e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521   1 LTFSLSLMLGTTITISSNHWMTAWTGLEINTLAIIPLISKSHHPRAIEAAIKYFLTQAAASTLLLFSSMINAWHTGQWDI 80
Cdd:MTH00200   7 PLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQWGI 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521  81 TQLNHPMSSLLLTTAIAMKLGLVPFHFWFPEVLQGSPLTTAMLLSTVMKFPPITILLLTSHSLNPTLLTTMAIASAALGG 160
Cdd:MTH00200  87 SEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLLSVLVGG 166
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521 161 WMGLNQTQIRKVLAFSSISHLGWMCIILIYAPKLTLTTFYIYCTMTGAIFLTLDTTKSLKLSTMMTSWTKAPMLNTTLMM 240
Cdd:MTH00200 167 WGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGL 246
                        250       260       270
                 ....*....|....*....|....*....|....*
gi 984293521 241 TLLSLAGLPPLTGFLPKWLIIQELSKQEMTAPATI 275
Cdd:MTH00200 247 TLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATI 281
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
5-261 3.17e-82

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 251.00  E-value: 3.17e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521   5 LSLMLGTTITISSNHWMTAWTGLEINTLAIIPLISKSHHPRAIEAAIKYFLTQAAASTLLLFSSMINAWHTGQWDITQLN 84
Cdd:MTH00041  11 TSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGPL 90
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521  85 HPMSSLLLTTAIAMKLGLVPFHFWFPEVLQGSPLTTAMLLSTVMKFPPITILLLTSHSLNPTLLTTMAIASAALGGWMGL 164
Cdd:MTH00041  91 NTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGGWGGL 170
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521 165 NQTQIRKVLAFSSISHLGWMCIILIYAPKLTLTTFYIYCTMTGAIFLTLDTTKSLKLSTMMTSWTKAPMLNTTLMMTLLS 244
Cdd:MTH00041 171 NQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSILS 250
                        250
                 ....*....|....*..
gi 984293521 245 LAGLPPLTGFLPKWLII 261
Cdd:MTH00041 251 LGGLPPLTGFLNKFISL 267
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
1-275 4.59e-57

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 185.80  E-value: 4.59e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521   1 LTFSLSLMLGTTITISSNHWMTAWTGLEINTLAIIPLISKSHHPRAIEAAIKYFLTQAAASTLLLFSSMINAWhtgqwdI 80
Cdd:MTH00160   8 LLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML------N 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521  81 TQLNHPMSSLLLTTAIAMKLGLVPFHFWFPEVLQGSPLTTAMLLSTVMKFPPITILlltSHSLNPTLLTTMAIASAALGG 160
Cdd:MTH00160  82 LMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILL---SYLINNNFIIIIIILSAIIGA 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521 161 WMGLNQTQIRKVLAFSSISHLGWMCIILIYAPKLTLTTFYIYCTMTGAIFLTLDTTKSLKLSTMMTSWTKAPMLNTTLMM 240
Cdd:MTH00160 159 IGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFL 238
                        250       260       270
                 ....*....|....*....|....*....|....*
gi 984293521 241 TLLSLAGLPPLTGFLPKWLIIQELSKQEMTAPATI 275
Cdd:MTH00160 239 NLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFI 273
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
7-269 4.89e-50

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 167.37  E-value: 4.89e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521   7 LMLGTTITISSNHWMTAWTGLEINTLAIIPLISKSHHPRAIEAAIKYFLTQAAASTLLLFSSMINAWHTGQWDitqlnhp 86
Cdd:MTH00144  13 MVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWF------- 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521  87 mSSLLLTTAIAMKLGLVPFHFWFPEVLQGSPLTTAMLLSTVMKFPPI-TILLLTSHSLNPTLLTTMAIASAALGGWMGLN 165
Cdd:MTH00144  86 -SMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLfLLSNFLDLYWLAYLLCVISVLSALVGSIGGLN 164
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521 166 QTQIRKVLAFSSISHLGWMCIILIYAPKLTLTTFYIYCTMTGAIFLTLdTTKSLKLSTMMTSWTKAPMLNTTLMMTLLSL 245
Cdd:MTH00144 165 QTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSL-WSGDSGSMKDLGSLKPSYKTGLSIISLLLSL 243
                        250       260
                 ....*....|....*....|....
gi 984293521 246 AGLPPLTGFLPKWLIIQELSKQEM 269
Cdd:MTH00144 244 GGLPPFLGFCSKLLVLISSMESSP 267
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
3-272 1.32e-44

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 153.40  E-value: 1.32e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521   3 FSLSLMLGTTITISSNHWMTAWTGLEINTLAIIPLISKSHHPRAIEAAIKYFLTQAAASTLLLFSSminawhTGQWDITQ 82
Cdd:MTH00011  11 FSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWSFPS 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521  83 LNHPMSSLLLTTAIAMKLGLVPFHFWFPEVLQGSPLTTAMLLSTVMKFPPITILLLTSHSLNPTLLTTMAIASAALGGWM 162
Cdd:MTH00011  85 LLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLG 164
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521 163 GLNQTQIRKVLAFSSISHLGWMCIILIYAPKLTLTTFYIYCTMTGAIFLTLDTTKSLKLSTMMTSWTKAPMLNTTLMMTL 242
Cdd:MTH00011 165 GMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIML 244
                        250       260       270
                 ....*....|....*....|....*....|
gi 984293521 243 LSLAGLPPLTGFLPKWLIIQELSKQEMTAP 272
Cdd:MTH00011 245 LSLGGLPPFTGFMPKLMAIETLTSNSMILI 274
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
3-264 8.93e-39

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 137.88  E-value: 8.93e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521   3 FSLSLMLGTTITISSNHWMTAWTGLEINTLAIIPLISKSHHPRAIEAAIKYFLTQAAASTLLLFSSMInawhtgqwdiTQ 82
Cdd:MTH00197   3 FLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSL----------SF 72
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521  83 LNHP---MSSLLLTTAIAMKLGLVPFHFWFPEVLQGSPLTTAMLLSTVMKFPPITILLLTSHslNPTLLTTMAIASAALG 159
Cdd:MTH00197  73 SNLYlslLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSS--SFMGLLICSVLSSLIG 150
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521 160 GWMGLNQTQIRKVLAFSSISHLGWMCIILIYAPKLTLTTFYIYCTMTGAIFLTLDTTKSLKLSTMMTSWTKAPMLNTTLM 239
Cdd:MTH00197 151 GIGGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLG 230
                        250       260
                 ....*....|....*....|....*
gi 984293521 240 MTLLSLAGLPPLTGFLPKWLIIQEL 264
Cdd:MTH00197 231 LSFLSLGGLPPLSGFFLKWLILTSL 255
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
3-275 2.51e-34

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 129.08  E-value: 2.51e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521   3 FSLSLM--LGTTITISSNHWMTAWTGLEINTLAIIPLIS-KSHHPRAIEAAIKYFLTQAAASTLLLF-SSMINAWhTGQW 78
Cdd:COG1007  105 YALLLFatLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSL 183
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521  79 DITQL-----NHPMSSLLLTTAIAM-------KLGLVPFHFWFPEVLQGSPLTTAMLLSTVMK----FPPITILLLTSHS 142
Cdd:COG1007  184 NLAGIaaalaAGGANSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaafAALLRLLVEAFPG 263
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521 143 LNP---TLLTTMAIASAALGGWMGLNQTQIRKVLAFSSISHLGWMCIILIYAPKLTLTT--FY--IYCTMTGAIFLTLDT 215
Cdd:COG1007  264 LAAdwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVSAalFYllAYLFMNLGAFAVILL 343
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 984293521 216 -TKSLKLSTMMTSW----TKAPMLNTTLMMTLLSLAGLPPLTGFLPKWLIIQELSKQEMTAPATI 275
Cdd:COG1007  344 lSRKGGEAEEIEDLaglaRRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVI 408
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
9-261 4.39e-32

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 121.29  E-value: 4.39e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521   9 LGTTITISSNHWMTAWTGLEINTLAIIPLI-SKSHHPRAIEAAIKYFLTQAAASTLLLFS-------------SMINAWH 74
Cdd:MTH00196   4 LGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINLVL 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521  75 TGQWDITQLNHPMSSLLLTTAIAMKLGLVPFHFWFPEVLQGSPLTTAMLLSTVMKFPPITILLltSHSLNPTLLTTMAIA 154
Cdd:MTH00196  84 NSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILV--SIGLNVNILLIGGLF 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521 155 SAALGGWMGLNQTQIRKVLAFSSISHLGWMCIIL----IYAPKLTLTTFYIYCTMTGAIF---LTLDTTKSLKLSTMMTS 227
Cdd:MTH00196 162 SLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIeigsFESIQASLVYLFIYIIMSICVFsiiLALNVYKNLIIEFSGLS 241
                        250       260       270
                 ....*....|....*....|....*....|....
gi 984293521 228 wTKAPMLNTTLMMTLLSLAGLPPLTGFLPKWLII 261
Cdd:MTH00196 242 -RRLPILAITLALTFLSIAGIPPLVGFLGKWLIL 274
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
17-262 2.85e-31

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 117.41  E-value: 2.85e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521   17 SNHWMTAWTGLEINTLAIIPLI-SKSHHPRAIEAAIKYFLTQAAASTLLLFSSMINAWHTGQWDITQL-----------N 84
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521   85 HPMSSLLLTTAIAMKLGLVPFHFWFPEVLQGSPLTTAMLLSTVMKFPPITILLLTSHSLNPT------LLTTMAIASAAL 158
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSspfiqqILLILAIISMLL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521  159 GGWMGLNQTQIRKVLAFSSISHLGWMCIIL----IYAPKLTLTTFYIYCTMTGAIFL-----TLDTTKSLKLSTMMTSWT 229
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240
                         250       260       270
                  ....*....|....*....|....*....|...
gi 984293521  230 KAPMLNTTLMMTLLSLAGLPPLTGFLPKWLIIQ 262
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
3-275 5.03e-29

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 114.53  E-value: 5.03e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521   3 FSLSLM--LGTTITISSNHWMTAWTGLEINTLAIIPLIS-KSHHPRAIEAAIKYFLTQAAASTLLLF-SSMINAWhTGQW 78
Cdd:PRK05777 106 YLLVLFalLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYgMSLLYGA-TGSL 184
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521  79 DITQL-----NHPMSSLLLTTAIAM-------KLGLVPFHFWFPEVLQGSPLTTAMLLSTVMK---FPPIT-ILLLTSHS 142
Cdd:PRK05777 185 SFAGIakalaDGSGNSLLLLFGLVFllvglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaaFAVLLrLLVVAFGG 264
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521 143 LNPT---LLTTMAIASAALGGWMGLNQTQIRKVLAFSSISHLGWMCIILIYAPKLTLTT--FY--IYCTMTGAIFLTLDT 215
Cdd:PRK05777 265 LSEDwqqVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYSAvlFYllAYLFMTLGAFGVISL 344
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 984293521 216 TKS-LKLSTMMTSWT----KAPMLNTTLMMTLLSLAGLPPLTGFLPKWLIIQELSKQEMTAPATI 275
Cdd:PRK05777 345 LRRkGGEAESISDFAglskRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVI 409
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
5-261 2.41e-28

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 112.42  E-value: 2.41e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521   5 LSLMLGTTITISSNHWMTAWTGLEINTLAIIPLIS-KSHHPRAIEAAIKYFLTQAAASTLLLFSSMINAWHTGQWDITQL 83
Cdd:MTH00199 104 LIVALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIQGI 183
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521  84 NHPMSS----LLLTTAIAMKLGLVPFHFWFPEVLQGSPLTTAMLLSTVMKFPPITILLLTSHSLNPTLLTtmAIASAALG 159
Cdd:MTH00199 184 NSILTGdvgkILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSIIYG 261
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521 160 GWMGLNQTQIRKVLAFSSISHLGWMCIILIYAP----KLTLTTFYIYCTMTGAIF---LTLDTTKSLKLSTMMTSwTKAP 232
Cdd:MTH00199 262 AIGALNQTKIKRLLAYSGIGHMGFILFGVAIGSfesiQASLIYMIIYVIMSICSFsiiLSLKLTKGLIVEVSGLS-RKNP 340
                        250       260
                 ....*....|....*....|....*....
gi 984293521 233 MLNTTLMMTLLSLAGLPPLTGFLPKWLII 261
Cdd:MTH00199 341 VIALTLALTFLSIAGIPPLAGFLSKWLIL 369
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
9-269 4.66e-25

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 103.49  E-value: 4.66e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521    9 LGTTITISSNHWMTAWTGLEINTLAIIPLIS-KSHHPRAIEAAIKYFLTQAAASTLLLFSSMINAWHTGQWDITQLNHPM 87
Cdd:TIGR01770 113 LGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFL 192
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521   88 SS------------LLLTTAIAMKLGLVPFHFWFPEVLQGSPLTTAMLLSTVMK---FPPITILLLTS----HSLNPTLL 148
Cdd:TIGR01770 193 SNgmlnisllllgiVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaiFAVFLRLFLYIlfgfSEAWQIFL 272
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521  149 TTMAIASAALGGWMGLNQTQIRKVLAFSSISHLGW--MCIILIYAPKLTLTTFY--IYCTMTGAIFLTLDTTKSLK---- 220
Cdd:TIGR01770 273 AIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYilIGLLAGTLEGIKAVLFYifIYALMSLGAFGVLSLLRSYKdewi 352
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 984293521  221 --LSTMMTSWTKAPMLNTTLMMTLLSLAGLPPLTGFLPKWLIIQELSKQEM 269
Cdd:TIGR01770 353 eyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGL 403
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
7-262 1.64e-23

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 98.68  E-value: 1.64e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521   7 LMLGTTITISSNHWMTAWTGLEINTLAIIPLISKSHHPRAIEAAIKYFLTQAAASTLLLFSSMINAWHTGQWDITQLNHP 86
Cdd:COG0651  116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAAR 195
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521  87 MSSL----------LLTTAIAMKLGLVPFHFWFPEVLQGSPLTTAMLLSTVMKFPPITILLLTSHSLNP--------TLL 148
Cdd:COG0651  196 LAELdpglllaafaLLLVGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLTKVGVYAILRVLTLLFGadpalflgTLL 275
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521 149 TTMAIASAALGGWMGLNQTQIRKVLAFSSISHLGWMCI-ILIYAPKLTLTTFYIY---CTMTGAIFLT----LDTTKSLK 220
Cdd:COG0651  276 LVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLgLGLGTPLGLAGALFHLlnhALAKALLFLAagaiERATGTRD 355
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 984293521 221 LSTMMTSWTKAPMLNTTLMMTLLSLAGLPPLTGFLPKWLIIQ 262
Cdd:COG0651  356 LDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQ 397
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
9-261 1.74e-22

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 96.47  E-value: 1.74e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521   9 LGTTITISSNHWMTAWTGLEINTLAIIPLISKSHHPRAI---------EAAIKYFLTQAAASTLLLFSSMINAWHTGQ-- 77
Cdd:MTH00198 199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNeg 278
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521  78 ------------WDITQLNHPMSSLLLTTAIAMKLGLVPFHFWFPEVLQGSPLTTAMLLSTVMKFppITILLLTSHSLNP 145
Cdd:MTH00198 279 mlgtilsatletTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--TVYILLTSLVITS 356
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521 146 TLLTTMAIASAALGGWMGLNQTQIRKVLAFSSISHLGWMCI----------------ILIYAPKlTLTTFYIYCTMTGai 209
Cdd:MTH00198 357 KLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIgvsagtyeslqaswtyAVTYLVS-ALASFTVICTLEE-- 433
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 984293521 210 FLTLDTTKSLK------------LSTMMTSWTKAPMLNTTLMMTLLSLAGLPPLTGFLPKWLII 261
Cdd:MTH00198 434 FGTRTPTSRQRdgsfgnynlvrrLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFIL 497
ndhB CHL00049
NADH dehydrogenase subunit 2
1-257 3.04e-17

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 80.82  E-value: 3.04e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521   1 LTFSLSLMLGTTITISSNHWMTAWTGLEINTLAIIPLISKSHHP-RAIEAAIKYFLTQAAASTLLL--FSSM--INAWHT 75
Cdd:CHL00049 114 LLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTKKDvRSNEATMKYLLMGGASSSILVygFSWLygLSGGEI 193
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521  76 GQWDITQ--LNHPMSS--------LLLTTAIAMKLGLVPFHFWFPEVLQGSPLTTAMLLSTVMKFPP-------ITILLL 138
Cdd:CHL00049 194 ELQEIVNglINTQMYNspgisialIFITVGIGFKLSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAAsalatriFDIPFY 273
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521 139 TSHSLNPTLLTTMAIASAALGGWMGLNQTQIRKVLAFSSISHLGWMCIILI-------YAPKLTLTTFYIYC---TMTGA 208
Cdd:CHL00049 274 FSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIvgdsndgYASMITYMLFYIFMnlgTFACI 353
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|
gi 984293521 209 IFLTLDT-TKSLKLSTmmTSWTKAPMLNTTLMMTLLSLAGLPPLTGFLPK 257
Cdd:CHL00049 354 VLFGLRTgTDNIRDYA--GLYTKDPFLALSLALCLLSLGGIPPLAGFFGK 401
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
44-257 1.03e-16

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 79.32  E-value: 1.03e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521  44 PRAIEAAIKYFLTQAAASTLLLF-SSMINAWHTGQWDITQLNHPM---SSLLLTTA-------IAMKLGLVPFHFWFPEV 112
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGSTQLSAIALALitsPSLGLALAlvfviagIAFKISAVPFHQWTPDV 236
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521 113 LQGSPLTTAMLLSTVMK---FPPITILLLTSHSLNPT----LLTTMAIASAALGGWMGLNQTQIRKVLAFSSISHLGWMC 185
Cdd:PRK02504 237 YEGSPTPVVAFLSVGSKaagFALAIRLLVTAFPSFDEqwklLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVM 316
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521 186 IILI------YAPKLTLTTFYIY---CTMTGAIFLTLdTTKSLKLSTMMTSWTKAPMLNTTLMMTLLSLAGLPPLTGFLP 256
Cdd:PRK02504 317 IGLVagteagYASMVFYLLAYLFmnlGAFACVILFSL-RTGTDQISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGFFG 395

                 .
gi 984293521 257 K 257
Cdd:PRK02504 396 K 396
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
32-261 1.19e-16

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 79.35  E-value: 1.19e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521  32 LAIIP---LISKSHHPRAIEAAIKYFLTQAAASTLLLFSSMINAWHTGQW--DITQL-NHPMSS-------LLLTTAIAM 98
Cdd:COG1008  142 LMLIPmyfLIGIWGGERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELaAAPLPLtaqlllfLAFFIAFAV 221
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521  99 KLGLVPFHFWFPEVLQGSPLTTAMLLSTVM---------KFPpITILLLTSHSLNPTLLTtMAIASAALGGWMGLNQTQI 169
Cdd:COG1008  222 KVPMFPFHTWLPDAHVEAPTAGSVLLAGVLlkmggygllRFA-LPLFPEASAYFAPLLAA-LGVIGIIYGALVALAQTDL 299
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521 170 RKVLAFSSISHLGwMCIILIYApkltLTTFyiycTMTGAIFLTL-----------------DTTKSLKLSTMMTSWTKAP 232
Cdd:COG1008  300 KRLIAYSSVSHMG-FVLLGIFA----LNPL----GLQGAVLQMVshglitaalfllvgvlyDRTHTRDIADLGGLAKRMP 370
                        250       260
                 ....*....|....*....|....*....
gi 984293521 233 MLNTTLMMTLLSLAGLPPLTGFLPKWLII 261
Cdd:COG1008  371 VLAALFLLAALASLGLPGTSGFVGEFLVL 399
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
44-262 3.87e-13

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 68.81  E-value: 3.87e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521   44 PRAIEAAIKYFLTQAAASTLLLFSSMINAW-HTGQWDITQL-NHPMSS-------LLLTTAIAMKLGLVPFHFWFPEVLQ 114
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFlGGGTFDLLELlNLPLPFgvqtwlfLAFFIAFAVKVPLFPLHTWLPDAHV 231
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521  115 GSPLTTAMLLSTVM-KFPPITILLL-------TSHSLNPtLLTTMAIASAALGGWMGLNQTQIRKVLAFSSISHLGWMCI 186
Cdd:TIGR01972 232 EAPTAGSVILAGVLlKMGTYGFLRFnlplfpdASLYFAP-VLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLL 310
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521  187 ILIYAPKLTLTTFYIYC----TMTGAIFLTL----DTTKSLKLSTMMTSWTKAPMLNTTLMMTLLSLAGLPPLTGFLPKW 258
Cdd:TIGR01972 311 GIFSFNELGISGAVFQMishgLITAALFLLVgvlyERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEF 390

                  ....
gi 984293521  259 LIIQ 262
Cdd:TIGR01972 391 LILL 394
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
2-269 7.20e-13

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 68.10  E-value: 7.20e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521   2 TFSLSLMLGTTITISSNHWMTAWTGLEINTLA---IIPLISKshhpRAIEAAIKYFLTQAAASTLLLFSSMINAWHTGQW 78
Cdd:PRK08668 102 MFALMSLAGVLGVFLANDLLTLYIFWEIMTFSsfmMVPMGKK----ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTF 177
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521  79 DITQLNHPMSS-----------LLLTTAIAMKLGLVPFHFWFPEVLQGSPLT-TAML-----------LSTVMKFPPITI 135
Cdd:PRK08668 178 DFADISQGLINdtstgfalivfLFLLAFGVAKAGIFPLHVWAPDAYSEAPQSfSAVLsgqlsklgaygFLLVLYVLPGTK 257
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521 136 LLLT-----SHSLNPTLLTTMAIASAALGGWMGLNQTQIRKVLAFSSISHLGWMCIILIYAPKLTLT--TFYI--YCTMT 206
Cdd:PRK08668 258 LFSEfgtyrGVPLFNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFAggLFHVfnHALFK 337
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 984293521 207 GAIFLTLDT----TKSLKLSTMMTSWTKAPMLNTTLMMTLLSLAGLPPLTGFLPKWLIIQELSKQEM 269
Cdd:PRK08668 338 GLFFLIFAAviyrTGTTKISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGM 404
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
27-260 1.23e-12

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 67.43  E-value: 1.23e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521  27 LEINTLAIIPLIS-KSHHPRAIEAAIKYFLTQAAASTLLLFSSMINAWHTGQWDITQLNHPMSS----------LLLTTA 95
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGIALLYGQYGTLNMAYLAVKMSEnptvvakialALFIAG 229
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521  96 IAMKLGLVPFHFWFPEVLQGSP--LTTAMLLSTVMKFPPITILLLTSHSLNPTLLTT------MAIASAALGGWMGLNQT 167
Cdd:PRK08376 230 LAMKSGAVPVHMWLPDAYPAAPssISAMLLVIKQAGLYALARVLFSIYGPAINLATVgwviiiLGCLTMFVGVAMAVVQK 309
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521 168 QIRKVLAFSSISHLGWMCI---ILIYAPKLTLTTFYIYCTMTGAIFLTLDTT--KSL---------------KLSTMMTS 227
Cdd:PRK08376 310 DVKRLLAYHSVSQIGYMLLglgVGLAALGDPAMASYGEIALAGGIYHIVNHAlyKALlfltagaviyetgtrNLNELGGL 389
                        250       260       270
                 ....*....|....*....|....*....|...
gi 984293521 228 WTKAPMLNTTLMMTLLSLAGLPPLTGFLPKWLI 260
Cdd:PRK08376 390 ARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
27-264 1.68e-12

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 66.83  E-value: 1.68e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521  27 LEINTLAIIPLISKSHHPRAIEAAIKYFLTQAAASTLLLFSSMINAWHTGQW---DITQLNHPMSSLLLTTAIAM----- 98
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLnmaDLAGALAENPTVVTAFGFVLlalal 214
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521  99 KLGLVPFHFWFPEVLQG-SPLTTAMLLSTVMKFPPITILLLTSHSLNP---------TLLTTMAIASAALGGWMGLNQTQ 168
Cdd:PRK08375 215 KAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAVYALIRIYFTVFGGdfrfalglgWLLAVLALLSMLVGSLAALGQDD 294
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521 169 IRKVLAFSSISHLGWMCIILIYAPKLTLT--TFYI--YCTMTGAIFLTL----DTTKSLKLSTMMTSWTKAPMLNTTLMM 240
Cdd:PRK08375 295 VKRVLAYSTVSQMGYILLGLALLTPLALAagLLHLlhHALMKGALFLAAgaieVTYGTRRLSELSGLGRRMPLTAAAFAV 374
                        250       260
                 ....*....|....*....|....
gi 984293521 241 TLLSLAGLPPLTGFLPKWLIIQEL 264
Cdd:PRK08375 375 ASLSLIGVPPTSGFVSKWYLVVGA 398
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
42-264 1.57e-11

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 64.02  E-value: 1.57e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521  42 HHPRAIEAAIKYFLTQAAASTLLLFSSMINAWHTGQWDITQLNH----PMSSLLLTTAIAM-------KLGLVPFHFWFP 110
Cdd:COG1009  156 EKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELLAaaptILSSPLLTLILLLlllgafgKSAQFPLHFWLP 235
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521 111 EVLQGsPLTTAMLL--ST--------VMKFPPITillltshSLNPTLLTTMAI---ASAALGGWMGLNQTQIRKVLAFSS 177
Cdd:COG1009  236 DAMEG-PTPVSALLhaATmvkagvylLARLSPLF-------ALSPVWLTVVAIigaITALFAALIALAQTDIKRVLAYST 307
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521 178 ISHLGWMcIILIYAPKLTLTTFYIyctMTGAIFltldttKSL------------------KLSTMmtsWTKAPMLNTTLM 239
Cdd:COG1009  308 VSQLGYM-FLALGVGAYVAALFHL---LTHAFF------KALlflgagsvihatgtrdirKMGGL---RKKMPITAITFL 374
                        250       260
                 ....*....|....*....|....*
gi 984293521 240 MTLLSLAGLPPLTGFLPKWLIIQEL 264
Cdd:COG1009  375 IGALSLAGIPPFAGFFSKEAILEAA 399
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
44-261 2.22e-10

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 60.60  E-value: 2.22e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521  44 PRAIEAAIKYFLTQAAASTLLLFSSM----INAWHTGQWDITQL-NHPMSS-------LLLTTAIAMKLGLVPFHFWFPE 111
Cdd:PRK05846 157 KNRIYAATKFFLYTLLGSLLMLVAIIylvvVYYNATGTFDIADLlNLPLPPgvqywlfLAFFIAFAVKMPMFPLHTWLPD 236
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521 112 VLQGSPLTTAMLLSTVM---------KFPpITILLLTSHSLNPtLLTTMAIASAALGGWMGLNQTQIRKVLAFSSISHLG 182
Cdd:PRK05846 237 AHVQAPTAGSVLLAGILlkmgaygllRFS-LPLFPDASHEFAP-IIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMG 314
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521 183 WMcIILIYA---PKLTLTTFYI--YCTMTGAIFLTL----DTTKSLKLSTMMTSWTKAPMLNTTLMMTLLSLAGLPPLTG 253
Cdd:PRK05846 315 FV-TLGIFAgnqLGIQGAIFQMisHGLSSAALFLLVgvlyDRLHTRDIADYGGLAKVMPVLAAFFLFFAMASLGLPGTSG 393

                 ....*...
gi 984293521 254 FLPKWLII 261
Cdd:PRK05846 394 FVGEFLIL 401
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
7-262 3.45e-09

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 56.86  E-value: 3.45e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521   7 LMLGTTITISSNHWMTAWTGLEINTLAIIPLISKSHHPRAIEAAIKYFL------TQAAASTLLLFSS----MINAWHTG 76
Cdd:PRK06458 117 FLFTMLLALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIicsvgvAFALFGTILVYANaatvMGDGEMAI 196
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521  77 QW-DITQLNHPMSSLLLTTAIAM-------KLGLVPFHFWFPEVLQGSPLTTAMLLS---------TVMKFPPITILLLT 139
Cdd:PRK06458 197 LWtELLKHASLLDPTLMKLAFVFlligfgtKVGLFPMHAWLPDAHSEAPSPVSALLSgvllnvalyAVLRYYILIDAAIG 276
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521 140 SHSLNPtLLTTMAIASAALGGWMGLNQTQIRKVLAFSSISHLGWMCIIL-------IYAPKL-----TLTTFYIYCTmTG 207
Cdd:PRK06458 277 SDFPGR-LLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALgiggplgIFAALLhmlnhSLTKSAIFFA-SG 354
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 984293521 208 AIFLTLDTTKSLKLSTMMTSwtkAPMLNTTLMMTLLSLAGLPPLTGFLPKWLIIQ 262
Cdd:PRK06458 355 NVLQKYGTRDINVIRGLLKV---SPLTGWGLMLGALAIAGMPPFGVFISEFLILT 406
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
27-264 5.45e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 56.50  E-value: 5.45e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521  27 LEINTLAIIPLISKSHHPRAIEAAIKYFLTQAAASTLLLFSSMINAWHTGQWDITQLNH--PMSSLLLTTAIAMKLGLVP 104
Cdd:PRK07234 123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATadPEAFALIALGLLVKGGIFV 202
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521 105 FHFWFPEVLQGS-PLTTAMLLSTVMK---FPPITILLLTSHSLNPtlLTTMAIASAALGGWMGLNQTQIRKVLAFSSISH 180
Cdd:PRK07234 203 SGLWLPLTHSEAePPVSALLSGVVVKagvFPLVRCALDVPGLDLI--VRIFGVGTALLGVLFALLEKDLKRMLAFSTISQ 280
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521 181 LGWMCIILIYAPKLTLTtfyiYCTMTGAIFLTLDTTKSLKL----STMMTSWTKAPmlnttLMMTLLSLAGLPPLTGFLP 256
Cdd:PRK07234 281 LGFILAAPLVGGLYALA----HGLVKSTLFLCAGALPSRNFteliSQMLGIGKWIP-----LTMASFSIAGFPLLAGFVS 351

                 ....*...
gi 984293521 257 KWLIIQEL 264
Cdd:PRK07234 352 KVLTLKNL 359
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
47-262 1.13e-07

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 52.26  E-value: 1.13e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521  47 IEAAIKYFLTQAAASTLLLFSSMINAWHTGQWDITQLNH-----------PMSSLLLTTAIAMKLGLVPFhFWFPEVLQG 115
Cdd:PRK12663 157 LRGAIKYVVLNLIGSWLFLLGIGLLYGTFGTLNMAHIAMrlndmgdtatlTTIALLFLLAFGMKAALFPF-MWLPAAYHT 235
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521 116 SPLTTAMLLSTVMK-------FPPITILLLTSHSLNPTLLTTMAIASAALGGWMGLNQTQIRKVLAFSSISHLGWMC--I 186
Cdd:PRK12663 236 PNTEVAALFAALLTkvgiyalIRVFTLLFPQERELLHPLLATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILlgL 315
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521 187 ILIYAPKLTLTTFYIYCTMT--GAIFLTLDTTKSL----KLSTMMTSWTKAPMLNTTLMMTLLSLAGLPPLTGFLPKWLI 260
Cdd:PRK12663 316 ALGTPAGINGAIFYLVHDMVvkTALFLIAGSLVRLtgyrSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLL 395

                 ..
gi 984293521 261 IQ 262
Cdd:PRK12663 396 VQ 397
PRK12650 PRK12650
DUF4040 family protein;
23-257 5.11e-07

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 50.81  E-value: 5.11e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521  23 AWtglEINTLAIIPLISKSHhPRAIEAAIKYFLTQAAASTLLLFSSMINAWHTGQWDITQLNHPMS---SLLLTTAIAM- 98
Cdd:PRK12650 138 AW---ELVSLASFFLIARSG-SGGEAGSIRTLILTFFGGLTLLAAVAIAATQTGTTSLSGILHSDVwaeKPGLTTVVAVl 213
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521  99 -------KLGLVPFHFWFPEVLQGSPLTTAMLLSTVMKFPPITILLLTS--HSLNPT---LLTTMAIASAALGGWMGLNQ 166
Cdd:PRK12650 214 iavaaftKSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSpvFHDVAVwnwLLIIVGMITALMGAVFAVQK 293
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521 167 TQIRKVLAFSSISHLGWM-CIILIYAPkLTLTTFYIYcTMTGAIFLT--------LD-TTKSLKLSTMMTSWTKAPMLNT 236
Cdd:PRK12650 294 TDLKKLTAYSTVSQLGWIvATIGVGTP-FALTAAVVH-TLAHALFKSslfmligvVDhQAGTRDIRRLGSLWRRMPFTFV 371
                        250       260
                 ....*....|....*....|.
gi 984293521 237 TLMMTLLSLAGLPPLTGFLPK 257
Cdd:PRK12650 372 SVTIAALSMAAVPPLFGFVSK 392
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
103-260 5.29e-07

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 50.69  E-value: 5.29e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521 103 VPFHFWFPEVLQGSPLTTAMLLSTVMKFPPITILLLTSHSLNPTLL--TTMAIASAA---LGGWMGLNQTQIRKVLAFSS 177
Cdd:PRK12647 212 FPFHFWLPNAMEAPTPVSAYLHSATMVKAGIYLLARLNPVLGGTPLwqTILPLFGGLtmlTGALLAVRQTDLKLILAYST 291
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521 178 ISHLGWMCIILIYAPKLTLTTFYIY----CTMTGAIFL----------TLDTTKSLKLSTMMtswtkaPMLNTTLMMTLL 243
Cdd:PRK12647 292 VSALGTLVMLLGLGSELAIKAAVLFlvahSLYKGALFMvagiidhetgTRDITKLGGLRRAM------PITAAAALLAAL 365
                        170
                 ....*....|....*..
gi 984293521 244 SLAGLPPLTGFLPKWLI 260
Cdd:PRK12647 366 SMAGLPPLFGFLAKELI 382
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
90-262 6.73e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 49.97  E-value: 6.73e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521  90 LLLTTAIAMKLGLVPFHFWFPEVLQGSP-LTTAM---LLSTVMKFPPITI--LLLTSHSLNpTLLTTMAIASAALGGWMG 163
Cdd:PRK12665 213 AVLLVAFGIKAAVFPLSFWLPDSYPTAPaPVTAVfagLLTKVGVYAIIRThtLLFPGGGLD-TLLMVVALLTMVVGILGA 291
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521 164 LNQTQIRKVLAFSSISHLGWMC--IILIYAPKLTLTTFYI--YCTMTGAIFLTLD----TTKSLKLSTMMTSWTKAPMLN 235
Cdd:PRK12665 292 IAQSDIKRLLSFTLVSHIGYMVfgIALSTVAGLSGAIYYVahHITVQTTLFLVVGlierQAGSSSLRRLGGLAKASPLLA 371
                        170       180
                 ....*....|....*....|....*..
gi 984293521 236 TTLMMTLLSLAGLPPLTGFLPKWLIIQ 262
Cdd:PRK12665 372 VLFFVPALNLGGIPPFSGFIGKVALLE 398
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
74-257 1.51e-06

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 49.15  E-value: 1.51e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521  74 HTGQWDITQL-NHPMSSLLLTTAIAM-------KLGLVPFHFWFPEVLQGSPLTTAMLLSTVM---------KFPPItil 136
Cdd:PRK12644 183 AAGTYRLSELlADPPTGPAVSVAVVLilvgalsKSAIVPFHFWLPGAMAAPTPVSAYLHAAAMvkagiylvaRLAPG--- 259
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521 137 LLTSHSLNPTLLTtMAIASAALGGWMGLNQTQIRKVLAFSSISHLGWMCIIL-IYAPKLTLTTFyiycTMTGA------- 208
Cdd:PRK12644 260 FADVPVWRPTVLV-LGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVgIGTRDAALAGL----AMLLAhalfkaa 334
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 984293521 209 IFLTLDT------TKSL-KLSTMmtsWTKAPMLNTTLMMTLLSLAGLPPLTGFLPK 257
Cdd:PRK12644 335 LFLVVGIidhstgTRDIrKLSGL---GRRQPVLAVVAALAAASMAGLPPLLGFVAK 387
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
1-265 4.55e-06

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 47.44  E-value: 4.55e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521   1 LTFSLsLMLGTTITISSNHWMTAWTGLEINTLAIIPLISKSHHPRAIEAAIKYFLTQAAA------STLLLFSSMINAWH 74
Cdd:PRK08676 106 LGFNL-LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALG 184
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521  75 TGQWDITQLNHP----------MSSLLLTTAIAMKLGLVPFHFWFPEVLQGSPLTTAMLLSTVMKFPPITILLLTSHSLN 144
Cdd:PRK08676 185 TGTLNWTELAAHasllspsvlgASFLFIFIGFLAKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLSALLR 264
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521 145 PT--------LLTTMAIASAALGGWMGLNQTQIRKVLAFSSISHLGWMCIILIYAPKLTL--TTFYIY---CTMTGAIF- 210
Cdd:PRK08676 265 QSgaaeqfsnVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALfwMLFHMLahsLVKSGLFFs 344
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 984293521 211 --LTLDTTKSLKLSTMMTSWTKAPMLNTTLMMTLLSLAGLPPLTGFLPKWLIIQELS 265
Cdd:PRK08676 345 agILHRQYRSDRFDRIFDVFRLQPVAAWGVILGSAAIIGMPPFPLFLSKFFILLQLG 401
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
28-262 5.38e-06

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 47.33  E-value: 5.38e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521  28 EINTLAIIPLISKSHHPRAIEAAIKYFLTQAAASTLLLFSSMINAWHTGQWDITQLNHPM-----------SSLLLTTAI 96
Cdd:PRK06277 130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDIHNALlvnptspviygGLLLLIFGL 209
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521  97 AMKLGLVPFHFWFPEVLQGSPLTTAMLLSTVMKFPPITILL--------LTSHSLNPTLLTTMAIASAALGGWMGLNQTQ 168
Cdd:PRK06277 210 LYGSGLPPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALMLvifklfggLSYFPSAQGVLIALSVLAMVFGVVMALLQTD 289
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521 169 IRKVLAFSSISHLGWMCIILIYAPKLTLTTFYIYCT----MTGAIFL----TLDTTKSLKLSTMMTSWTKAPMLNTTLMM 240
Cdd:PRK06277 290 YKRLLAYHAISQGGYVAAGLALGTPLGIVAGIFHAInhviYKSALFLgagiVSYRTKTSNLRKLGGLLPVMPVVAFMVLC 369
                        250       260
                 ....*....|....*....|..
gi 984293521 241 TLLSLAGLPPLTGFLPKWLIIQ 262
Cdd:PRK06277 370 AKLAISGVPPFNGFQSKLMLAQ 391
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
49-264 7.81e-06

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 47.03  E-value: 7.81e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521  49 AAIKYF-LTQAaaSTLLLFSSMINAW-HTGQWDITQLNHP-----MSSLLLTTAIAMKLGLVPFHFWFPEVLQGSPLTTA 121
Cdd:PRK08667 163 AGIFYFvMTQL--STVFLMLGIIVLFiQTGSFELSPLGASagilsLVFLLLFLGFGIKAGIIPFHKWLPYAHPASPSNVS 240
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521 122 MLLSTVM-KFPPITILLLTSHSLNP-----TLLTTMAIASAALGGWMGLNQTQIRKVLAFSSISHLGwmcIILIYAPKLT 195
Cdd:PRK08667 241 ALMSGVMlKVAVYGLVRFLMDVLSPelwwgVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIG---IILMGIGLYV 317
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521 196 LTTFYIYCTMT-----GAIFLTLDTT--KSL---------------KLSTMMTSWTKAPMLNTTLMMTLLSLAGLPPLTG 253
Cdd:PRK08667 318 IFGVYGLDTLAllalgGALFHSLNHAlfKSLlfltagsvvhatgtrNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNG 397
                        250
                 ....*....|.
gi 984293521 254 FLPKWLIIQEL 264
Cdd:PRK08667 398 FASELLLYESF 408
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
95-261 1.41e-05

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 46.07  E-value: 1.41e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521  95 AIAMKLGLVPFHFWFPEVLQGSPLTTAMLLSTV-----------MKFPpitILLLTSHSLNPTLLtTMAIASAALGGWMG 163
Cdd:MTH00226 239 AMAVKIPIFPFHIWLPKAHVEAPVAGSVLLAGIllklggyglvrLSWP---ILPLGAQNLAPAVI-AMGIVGIVYGSFAT 314
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521 164 LNQTQIRKVLAFSSISHLGWMCIILIYAPKLTLT-TFYIYCT--MTGAIFLTLDTTKSLKLSTMMTSWTKA-----PMLN 235
Cdd:MTH00226 315 CRQIDVKRLVAYSSVAHMGLVSITLVTHDIIGLTgSIFIMLAhgIVSSLLFILVTILYDRHHTRLIKYYRGlsitmPIWG 394
                        170       180
                 ....*....|....*....|....*.
gi 984293521 236 TTLMMTLLSLAGLPPLTGFLPKWLII 261
Cdd:MTH00226 395 TIMIVTSLANVAVPPSGNFIGEYLSI 420
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
3-275 3.44e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 44.81  E-value: 3.44e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521   3 FSLSLMLGTTITISSNhWMTAWTGLEINTLAIIPLISKSHHPRAIEAAIKYFLTQAAASTLLLFSSMI---NAWHTGQW- 78
Cdd:PRK06589 122 FNLTILIGVLIALSSD-LFTMFVCYELLTISTAFLIGHTRNNISLSGGYKYLKILMISALLLFLPAVIliyTKTGNLDFv 200
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521  79 --DITQLNHPMSSLLLTTAIAMKLGLVPFHFWFPEVLQGSPLTTAMLLSTVM----KFPPITILLLTSHSLNPTLLTTM- 151
Cdd:PRK06589 201 sgGLFSKNQSIILLLMFIYGIAKTAIFPVHSWLPAAMVAHYPVSALLHAVIVvktgLFCIYKILLYIFGLSYLQRIFAEf 280
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521 152 ------AIASAALGGWMGLNQTQIRKVLAFSSISHLGWMCII--LIYAPKLTLTTFYIYCTMTGAI--FLTLDTTKSLK- 220
Cdd:PRK06589 281 nwlifiPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALLSafILTPKALGAAILHLVSHSFAKIclFYSMGSIYSLKk 360
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 984293521 221 ---LSTMMTSWTKAPMLNTTLMMTLLSLAGLPPLTGFLPKWLIIQELSKQEMTAPATI 275
Cdd:PRK06589 361 edqVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQPWLSII 418
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
27-261 4.21e-05

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 44.58  E-value: 4.21e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521  27 LEINTLAIIPLISKSHHPRAIEAAIKYFLTQAAASTLLLFSSMINAWHTGQWDIT---QLNHPMSS---LLLTTAIAMKL 100
Cdd:PRK06525 142 FEITGLCSWALISYYQSPKALRSALKALLITHIGSLGLYLAAATLFLQTGTFALSalsGLHGSLKYlvfLGILFAAWGKS 221
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521 101 GLVPFHFWFPEVLQGSPLTTAMLLSTVMKFPPITILLLTSHSLNP------TLLTTMAIASAALGGWMGLNQTQIRKVLA 174
Cdd:PRK06525 222 AQLPFYSWLPDAMEAPTPASAYLHAASMVKVGVYIFARAIQSMGPiphvigYVGAVMAIVTLLYGFLMYLPQQDMKRLLA 301
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521 175 FSSISHLGWMCIILIYA-----PKLTLTTFYIYC---------TMTGAIFLTLDTTKSLKLSTMMtswTKAPMLNTTLMM 240
Cdd:PRK06525 302 YSTITQLGYMFFGLSLAilgsrLALEGSIAYIFNhafakslffLVAGALSYSCGTRLLPRLRGVL---KKLPLVGVGFCV 378
                        250       260
                 ....*....|....*....|.
gi 984293521 241 TLLSLAGLPPLTGFLPKWLII 261
Cdd:PRK06525 379 AALAITGVPPFNGFFSKFPIF 399
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
4-261 4.73e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 44.34  E-value: 4.73e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521   4 SLSLMLGTTItisSNHWMTAWTGLEINTLAIIPLISKSHHPRAIEAAIKYFLTQAAASTLLLFSSMINAWHTGQWDITQL 83
Cdd:PRK12662 119 CLGGLLGILV---SNDVFNIYVFLEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGIGFLYAITGTLNMGDM 195
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521  84 NHPMSSLLLTTAI-----------AMKLGLVPFHFWFPEVLQGSPLTTAMLLS----TVMKFPPITI--------LLLTS 140
Cdd:PRK12662 196 FLIIQDLPTNRAIqigvlfimvglFIKAALFPFHKWLIQAYSEAPSFISVFFSgtstKVMIYLIIRIvydvfkanFVFTT 275
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521 141 HSLNpTLLTTMAIASAALGGWMGLNQTQIRKVLAFSSISHLGWMCIILIYAPKLTLTTFYIYCT-----------MTGAI 209
Cdd:PRK12662 276 LPFN-NVFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVnhsivksalfmVSGSI 354
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 984293521 210 FLTLDTTKSLKLSTMmtswtKAPMLNTTLMMTLLSLA--GLPPLTGFLPKWLII 261
Cdd:PRK12662 355 SYHFGTTKLEDCLNL-----WKSMPKITLAFVLLSLSliGMPPTSGFVAKWYIL 403
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
42-257 5.46e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 44.43  E-value: 5.46e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521  42 HHPRAIEAAIKYFLTQAAASTLLLFSSMINAWHTGQWDITQL-----------NHPM---SSLLLTTAIAMKLGLVPFHF 107
Cdd:PRK12649 156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATIlqdselienikGHPLfliTLILIFIGAAAKSAQGPFYI 235
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521 108 WFPEVLQGSPLTTAMLLSTVMKFPPITILLLTSHSLNPT-----LLTTMAIASAALGGWMGLNQTQIRKVLAFSSISHLG 182
Cdd:PRK12649 236 WLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQLA 315
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521 183 WMCIILIYAPK------LTLTTFYI--YCTMTGAIFL----------TLDTTKSLKLSTMMtswtkaPMLNTTLMMTLLS 244
Cdd:PRK12649 316 YLMTMYGYTTYhepglgVAAATFHLlnHATFKACLFLvagivaheaaTRDIRKLGGLRKEM------PITFIVASIAALA 389
                        250
                 ....*....|...
gi 984293521 245 LAGLPPLTGFLPK 257
Cdd:PRK12649 390 MAGIPPLNGFLSK 402
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
86-262 6.22e-05

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 44.18  E-value: 6.22e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521  86 PMSSLLLTTAI--AMKLGLvpfHFWFPEVLQGSPLTTAMLLSTVMKFPPITIL-----LLTSHSLNPTLLTTMAIASAAL 158
Cdd:MTH00032 226 IIGILLLIGCIgkSAQLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLMirsfpLFEKAPLTLLIITIFGALTAFF 302
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521 159 GGWMGLNQTQIRKVLAFSSISHLGWMCIILIYAPKLTLTTFYI--YCTMTGAIFL---------TLDTTKSLKLSTMMTS 227
Cdd:MTH00032 303 AATVGLVQNDLKKVIAYSTCSQLGYMVLIIGIEGSHNVGLFHLvnHAFFKALLFLsagsvihstTVDEQDMRKMGGLIHS 382
                        170       180       190
                 ....*....|....*....|....*....|....*
gi 984293521 228 wtkAPMLNTTLMMTLLSLAGLPPLTGFLPKWLIIQ 262
Cdd:MTH00032 383 ---IPFTYTMMLIGSFSIMGLPYLTGFYSKDLILE 414
PRK06459 PRK06459
hydrogenase 4 subunit B; Validated
2-275 7.77e-05

hydrogenase 4 subunit B; Validated


Pssm-ID: 235806 [Multi-domain]  Cd Length: 585  Bit Score: 43.63  E-value: 7.77e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521   2 TFSLSLMLGTTITISSNHWM--TAWTGLEINTLAIIPLISKSHHPRAIeaaikyFLTQAAASTLLLFSSMINAWH-TGQW 78
Cdd:PRK06459  77 LYILTILGMAIVLTSDNYLLflAGWEIMTIPSYVAIALTKKNKRPAFV------FMAFGELSTVLILAGFAWAFIiSGTT 150
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521  79 DITQLNHPMSSLLLTTAIAMKLGLVPFHF--WFPEVLQGSPLTTAMLLSTVMK----FPPITILLLTSHS-LNPTLLTTM 151
Cdd:PRK06459 151 NFSYLPSPVPLILASFGFIIKMGMMPFLVseWLPIAHGNAPSNFSAILSATMTlmgvYGILKMTILTQTIpIGYFGLTIL 230
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521 152 AIA--SAALGGWMGLNQTQIRKVLAFSSISHLGWMCI-----ILIYAPKLTLTTFYIYCTMTGA---------IFLTLDT 215
Cdd:PRK06459 231 AIGafSILFGALYAYVSENVKGLLAFSTIENNGAILValglyMVTKQLITSIEHFSLITVILYSfahsvaktgLFLSSGL 310
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521 216 TKSLKLSTMMTSWTKAPMLNTTLMMtlLSLAGLPPLTGFLPKWLIIQELSKQEMTAPATI 275
Cdd:PRK06459 311 QEKQSITYSKKIRNRWIELGLTLLA--SSLSGLLPNIGGVASWLLLESLFMFAYVLHNVI 368
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
32-197 1.79e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 42.38  E-value: 1.79e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521  32 LAIIPL---ISKSHHPRAIEAAIKYFLTQAAASTLLLFSSMINAWHTG--QWDITQLNH---PMSSLLLTTA-----IAM 98
Cdd:PRK06473 138 LELIPLyllIAIWGGQRRGYAATKFLLYTAISGILILVSFLGLVWLSGasSFDYEPLRShtlPLSTQLLLLApilvgFGI 217
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521  99 KLGLVPFHFWFPEV-LQGSPLTTAMLLSTVMKFPPITIL------LLTSHSLNPTLLTTMAIASAALGGWMGLNQTQIRK 171
Cdd:PRK06473 218 KIPLVPFHTWLPDAhVEASTPVSVLLAGVLLKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKK 297
                        170       180
                 ....*....|....*....|....*.
gi 984293521 172 VLAFSSISHLGWMCIILIYAPKLTLT 197
Cdd:PRK06473 298 MVAYSSIGHMGYILLAAAAATPLSIL 323
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
12-184 1.83e-04

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 42.38  E-value: 1.83e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521  12 TITISSNHW---MTAW--TGLEINTLaiipLISKSHHPRAIEAAIKYFLTQAAASTLLLFSSMINAWHTGQWDITQL--- 83
Cdd:PRK08168 114 HLLVLSDHLlvlIAAWaaISLALHRL----LCFYPDRPFARLAAHKKFIADRLAELLLLAAAALAYLEVGSLSLSALwah 189
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521  84 --NHPMSS------LLLTTAIAMKLGLVPFHFWFPEVLQGSPLTTAMLLSTV--------MKFPPitiLLLTSHSLNpTL 147
Cdd:PRK08168 190 laAQGASPslqaaaLLLVLAVILKTAQLPVHGWLIQVMEAPTPVSALLHAGVvnlggfvlIRFAP---LLEQAPPAR-WL 265
                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 984293521 148 LTTMAIASAALGGWMGLNQTQIRKVLAFSSISHLGWM 184
Cdd:PRK08168 266 LVLVGLATAVLAGLVMLTRISIKVRLAWSTVAQMGFM 302
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
90-266 5.42e-04

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 40.97  E-value: 5.42e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521  90 LLLTTAIAMKLGLVPFHFWFPEVLQGSPLTTAMLLST-VMKFPPITILLLTSHSLNPTL-----LTTMAIASAALGGWMG 163
Cdd:PRK08042 184 LLGVIGFGLLAGIIPLHGWVPQAHANASAPAAALFSTvVMKIGLLGILTLSLLGGNAPLwwgvaLLVLGMITAFVGGLYA 263
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521 164 LNQTQIRKVLAFSSISHLGwmCIILIYAPKLTLTTF----YIYCTMTGAIFLTLDTT--KSLKLSTMMTSW--------- 228
Cdd:PRK08042 264 LMEHNIQRLLAYHTLENIG--IILLGLGAGVTGIALeqpaLIALGLVGGLYHLLNHSlfKSVLFLGAGSVWfrtghrdie 341
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 984293521 229 ------TKAPMLNTTLMMTLLSLAGLPPLTGFLPKWLIIQELSK 266
Cdd:PRK08042 342 klggigKKMPVISIAMLVGLMAMAALPPLNGFAGEWVIYQSFFK 385
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
90-262 6.09e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 40.85  E-value: 6.09e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521  90 LLLTTAI----AMKLGLVPFHFWFPEV-LQGSPLTTAMLLSTVMKFPPITILLL-------TSHSLNPTLLTTMAIaSAA 157
Cdd:PRK07363 205 LILLTGLllgfGIKIPLVPLHTWLPDAyTEASPAVAILLGGVLAKLGTYGLLRFglqlfpqTWSLVAPGLAIIGTI-SVI 283
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521 158 LGGWMGLNQTQIRKVLAFSSISHLGWMCIILIYAPKLTLT-----------TFYIYCTMTGAIFLTLDTTKSLKLSTMMT 226
Cdd:PRK07363 284 YGALSAIAQKDIKRMVAYSSIGHMGYILVAAAAGTQLSLLgavaqmishglILALLFHLVGIVERKVGTRDLDVLNGLMN 363
                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 984293521 227 SWTKAPMLNTTLMMTLLSLAGLPPLTGFLPKWLIIQ 262
Cdd:PRK07363 364 PIRGLPLTSALLVLAGMASAGIPGLVGFVAEFIVFQ 399
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
5-275 7.91e-04

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 40.52  E-value: 7.91e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521   5 LSLMLGTTITISSNHWMTAWTGLEINTLAIIPLISKSHHPRAIEAAIKYFLTQAAASTLLLFSSMINAWHTGQWDITQLN 84
Cdd:PRK08377 115 LLLMLGATGMIATGDIFNLFVFMEITAITAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLIGVALIYGATGTLNMAHIA 194
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521  85 HPMSSL----------LLTTAIAMKLGLVPFHFWFPEVLQGSPL-TTAMLLSTVMK---FPPITILLLTSHSLNPT---- 146
Cdd:PRK08377 195 QLAGTIdptvaqvglaLLIFGLAVEAELFPLNAWAPDAYQAAPHpITVMFSAFVVKaglYAMARILYLMQNANGWSsvlk 274
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521 147 LLTTMAIASAALGGWMGLNQTQIRKVLAFSSISHLGWMCIILIYAPKLTLTT--FYIYCTMTGAIFLTLD------TTKS 218
Cdd:PRK08377 275 LVIIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALALGTQAGVDAgvFHMINHAIVKALLFLAvgyvgiTLGG 354
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 984293521 219 LKLSTMMTSWTKAPMLNTTLMMTLLSLAGLPPLTGFLPKWLIIQELSKQEMTAPATI 275
Cdd:PRK08377 355 TEIEKFEGLGKRMPLTALALTIGALSTVGIPLFNVFWSKFRIILAGLSAGYTWPVAL 411
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
46-184 1.76e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 39.62  E-value: 1.76e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521  46 AIEAAIKYFLTQAAASTLLLFSSMINAWHTGQWDITQLNHPMSSLLLTTAIAMKLGLV----------------PFHFWF 109
Cdd:PRK07376 171 AADAAQKAFVVNRVGDFGLLLGILGLFWATGSFDFDGIADRLSELVSSGAVSGWLALLlcilvflgpmaksaqfPLHVWL 250
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521 110 PEVLQGSPLTTAMLLSTVMKFPPITIL--LLTSHSLNPTLLTTMAIA---SAALGGWMGLNQTQIRKVLAFSSISHLGWM 184
Cdd:PRK07376 251 PDAMEGPTPISALIHAATMVAAGVFLVarMYPVFEQFPAVMTVIAWTgaiTAFLGASIALTQNDIKKGLAYSTISQLGYM 330
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
80-262 1.91e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 39.16  E-value: 1.91e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521  80 ITQLNHPMSSLLLTTAI------AMKLGLVPFHFWFPEVLQGSPLTTAM----LLSTVMKFPPI-TILLLTSHSLNPT-- 146
Cdd:PRK07691 197 IAELSAGQTGLITVVAIlflfvfATKAGLFPLYFWLPGSYYAPPIAIAAlfgaLLTKVGVYAIArTFTLFFSHDTSFThy 276
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521 147 LLTTMAIASAALGGWMGLNQTQIRKVLAFSSISHLGWMCI-ILIYAPK-LTLTTFYIYCTM--TGAIFL----TLDTTKS 218
Cdd:PRK07691 277 LILILALLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVILVgVAMMTESgMIGAIYYLIHDMivKAALFLligiMIKITGT 356
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 984293521 219 LKLSTMMTSWTKAPMLNTTLMMTLLSLAGLPPLTGFLPKWLIIQ 262
Cdd:PRK07691 357 TDLKKMGGLIKRYPVLGWMFFIAALSLAGIPPLSGFYGKFFIVE 400
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
49-186 3.70e-03

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 38.47  E-value: 3.70e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521  49 AAIKYFLTQAAASTLLLFSSMINAWHTGQ--WDITQL---NHPMSSLLLT-----TAIAMKLGLVPFHFWFPEVLQGSPL 118
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELgakSYPLALELLLyagflIAFGVKLPIFPLHTWLPDAHGEASA 217
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 984293521 119 TTAMLLSTVM----KFPPITI---LLLTSHSLNPTLLTTMAIASAALGGWMGLNQTQIRKVLAFSSISHLGWMCI 186
Cdd:PRK12561 218 PVSMILAGVLlkmgGYALIRFnvqMLPDAHVYFAPALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLL 292
PRK06591 PRK06591
putative monovalent cation/H+ antiporter subunit D; Reviewed
15-267 7.05e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235837 [Multi-domain]  Cd Length: 432  Bit Score: 37.45  E-value: 7.05e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521  15 ISSNHWMTAWTGLEINTLAIIPLISKSHHPRAIEAAIKYFLTQAAASTLLLFSSMINAWHTGQWDITQ----LNHPMSSL 90
Cdd:PRK06591 132 IATNDFFNLYVFIEISALSSYVLIASGNNPKSLIGAFDYLIMGSIGATLILIAIGFLLSITGSLNMTDiaayLQEHTNSR 211
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521  91 LLTTAIA-------MKLGLVPFHFWFPEVLQGS---------PLTTAMLLSTVMKFPPITILLLTSHSLNPTLLTTMAIA 154
Cdd:PRK06591 212 IITIAIGffligaiLKTAFFPMHFWMMRAYNNTasvilvylaGISTIIGIYIIYKFTYIIIGYETIKTAITNFIRPIALA 291
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984293521 155 SAALGGWMGLNQTQIRKVLAFSSISHLGWMciiliyapkltlttFYIYCTMTGAI----FLTLDTTKSLKLSTMMT---S 227
Cdd:PRK06591 292 TLIIAPYFAYQAKNFKNIIIYSCFTQIGYV--------------FLLYVTENGIIilpsLLLADSINKIALFLIDAyneS 357
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|
gi 984293521 228 WTKAPmLNTTLMMTLLSLAGLPPLTGFLPKWLIIQELSKQ 267
Cdd:PRK06591 358 YKREP-NKVLIIIAIICSCGLPISPLFFIKVNILELLLTQ 396
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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