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Conserved domains on  [gi|1015567581|gb|AMV91960|]
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cytochrome b, partial (mitochondrion) [Cynomys ludovicianus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-49 2.69e-25

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 94.32  E-value: 2.69e-25
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1015567581   1 NKLGGVLALVFSILILMLFPLLHVSKQRSMMFRPLSQCVFWFLVADLLT 49
Cdd:MTH00100  286 NKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLT 334
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-49 2.69e-25

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 94.32  E-value: 2.69e-25
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1015567581   1 NKLGGVLALVFSILILMLFPLLHVSKQRSMMFRPLSQCVFWFLVADLLT 49
Cdd:MTH00100  286 NKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLT 334
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
1-48 1.26e-13

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 58.64  E-value: 1.26e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1015567581   1 NKLGGVLALVFSILILMLFPLLHVSKQRSMMFRPLSQCVFWFLVADLL 48
Cdd:pfam00032  29 SKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFV 76
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-49 2.69e-25

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 94.32  E-value: 2.69e-25
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1015567581   1 NKLGGVLALVFSILILMLFPLLHVSKQRSMMFRPLSQCVFWFLVADLLT 49
Cdd:MTH00100  286 NKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLT 334
CYTB MTH00119
cytochrome b; Provisional
 1-49 1.15e-21

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 84.57  E-value: 1.15e-21
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1015567581   1 NKLGGVLALVFSILILMLFPLLHVSKQRSMMFRPLSQCVFWFLVADLLT 49
Cdd:MTH00119  287 NKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLI 335
CYTB MTH00131
cytochrome b; Provisional
 1-48 2.74e-20

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 80.85  E-value: 2.74e-20
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1015567581   1 NKLGGVLALVFSILILMLFPLLHVSKQRSMMFRPLSQCVFWFLVADLL 48
Cdd:MTH00131  286 NKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVL 333
CYTB MTH00074
cytochrome b; Provisional
 1-48 3.79e-20

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 80.50  E-value: 3.79e-20
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1015567581   1 NKLGGVLALVFSILILMLFPLLHVSKQRSMMFRPLSQCVFWFLVADLL 48
Cdd:MTH00074  287 NKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVANTL 334
CYTB MTH00191
cytochrome b; Provisional
 1-48 9.11e-17

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 70.71  E-value: 9.11e-17
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1015567581   1 NKLGGVLALVFSILILMLFPLLHVSKQRSMMFRPLSQCVFWFLVADLL 48
Cdd:MTH00191  283 NKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANFI 330
CYTB MTH00034
cytochrome b; Validated
 1-48 1.81e-14

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 64.73  E-value: 1.81e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1015567581   1 NKLGGVLALVFSILILMLFPLLHVSKQRSMMFRPLSQCVFWFLVADLL 48
Cdd:MTH00034  286 NKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIATFF 333
CYTB MTH00053
cytochrome b; Provisional
 1-48 7.34e-14

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 62.80  E-value: 7.34e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1015567581   1 NKLGGVLALVFSILILMLFPLLHVSKQRSMMFRPLSQCVFWFLVADLL 48
Cdd:MTH00053  287 NKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFF 334
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
1-48 1.26e-13

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 58.64  E-value: 1.26e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1015567581   1 NKLGGVLALVFSILILMLFPLLHVSKQRSMMFRPLSQCVFWFLVADLL 48
Cdd:pfam00032  29 SKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFV 76
CYTB MTH00022
cytochrome b; Validated
 1-48 3.65e-13

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 60.87  E-value: 3.65e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1015567581   1 NKLGGVLALVFSILILMLFPLLHVSKQRSMMFRPLSQCVFWFLVADLL 48
Cdd:MTH00022  285 NKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDFI 332
CYTB MTH00145
cytochrome b; Provisional
 1-45 6.51e-13

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 60.30  E-value: 6.51e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1015567581   1 NKLGGVLALVFSILILMLFPLLHVSKQRSMMFRPLSQCVFWFLVA 45
Cdd:MTH00145  287 NKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFVG 331
CYTB MTH00156
cytochrome b; Provisional
 1-44 5.27e-12

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 57.48  E-value: 5.27e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1015567581   1 NKLGGVLALVFSILILMLFPLLHVSKQRSMMFRPLSQCVFWFLV 44
Cdd:MTH00156  276 NKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFV 319
CYTB MTH00016
cytochrome b; Validated
 1-48 1.63e-10

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 53.53  E-value: 1.63e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1015567581   1 NKLGGVLALVFSILILMLFPLLHVSKQRSMMFRPLSQCVFWFLVADLL 48
Cdd:MTH00016  287 NKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVSNFL 334
CYTB MTH00224
cytochrome b; Provisional
 1-45 1.39e-08

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 47.99  E-value: 1.39e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1015567581   1 NKLGGVLALVFSILILMLFPLLHVSKQRSMMFRPLSQCVFWFLVA 45
Cdd:MTH00224  287 NKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVT 331
CYTB MTH00033
cytochrome b; Provisional
 1-48 1.46e-08

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 48.01  E-value: 1.46e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1015567581   1 NKLGGVLALVFSILILMLFPLLHVSKQRSMMFRPLSQCVFWFLVADLL 48
Cdd:MTH00033  285 NKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFI 332
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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