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Conserved domains on  [gi|1022695614|gb|ANA77473|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Bleda notatus]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 7.52e-153

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 433.09  E-value: 7.52e-153
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614   1 MNPQAKLIFAISLLTGTTLTITSNHWVTAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQATASALLLFSSMTNAWH 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614  81 TGQWDITQMTHPMSCLILTSAIAMKLGLVPFHFWFPEVLQGAPLTTGLLLSTVMKFPPITLLFMTSHSLNPTVLVWMAIL 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614 161 SAALGGWMGLNQTQTRKILAFSSISHLGWMAIIISYSPKLTLLNFYIYLLMTTAVFMTLHTIKALKLSTLMTTWTKTPAL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614 241 SAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAAITISLLSLLGLFFYLRLAYCATITLPPHTTNHIKQWHTNKP 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 1022695614 321 TSTLIAVLTVMSTMLLPISPMMYSII 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 7.52e-153

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 433.09  E-value: 7.52e-153
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614   1 MNPQAKLIFAISLLTGTTLTITSNHWVTAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQATASALLLFSSMTNAWH 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614  81 TGQWDITQMTHPMSCLILTSAIAMKLGLVPFHFWFPEVLQGAPLTTGLLLSTVMKFPPITLLFMTSHSLNPTVLVWMAIL 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614 161 SAALGGWMGLNQTQTRKILAFSSISHLGWMAIIISYSPKLTLLNFYIYLLMTTAVFMTLHTIKALKLSTLMTTWTKTPAL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614 241 SAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAAITISLLSLLGLFFYLRLAYCATITLPPHTTNHIKQWHTNKP 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 1022695614 321 TSTLIAVLTVMSTMLLPISPMMYSII 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 24-268 1.16e-23

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 98.54  E-value: 1.16e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614  24 NHWVTAWAGLEINTLAILPLI-SKSHHPRSIEAATKYFLTQATASALLLFSSMTNAWHTGQWDITQM-----------TH 91
Cdd:pfam00361   2 NDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssGL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614  92 PMSCLILTSAIAMKLGLVPFHFWFPEVLQGAPLTTGLLLSTVMKFPPITLLFMTSHSLNPT------VLVWMAILSAALG 165
Cdd:pfam00361  82 LLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSspfiqqILLILAIISMLLG 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614 166 GWMGLNQTQTRKILAFSSISHLGWMAIIIS----YSPKLTLLNFYIYLLMTTAVF-MTLHTIKALKLSTLMTT----WTK 236
Cdd:pfam00361 162 SLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFlCAGSVIYRRVHTRNIRDygglAKT 241

                         250       260       270
                  ....*....|....*....|....*....|..
gi 1022695614 237 TPALSAMLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 242 MPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 24-280 1.48e-23

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 100.96  E-value: 1.48e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614  24 NHWVTAWAGLEINTLAILPLIS-KSHHPRSIEAATKYFLTQATASALLLF-SSMTNAWhTGQWDITQMTHPMS------- 94
Cdd:COG1007   122 NDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSLNLAGIAAALAaggansp 200

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614  95 -----CLILTSAIAMKLGLVPFHFWFPEVLQGAPLTTGLLLSTVMK----FPPITLLFMTSHSLNP---TVLVWMAILSA 162
Cdd:COG1007   201 llllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaafAALLRLLVEAFPGLAAdwqLLLAVLAVLSM 280

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614 163 ALGGWMGLNQTQTRKILAFSSISHLGWMAI-IISYSPK-LTLLNFY--IYLLMTTAVF-----MTLHTIKALKLSTLMTT 233
Cdd:COG1007   281 TVGNLAALAQTNVKRMLAYSSIAHAGYLLLgLAAGTPLgVSAALFYllAYLFMNLGAFavillLSRKGGEAEEIEDLAGL 360

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 1022695614 234 WTKTPALSAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAAI 280
Cdd:COG1007   361 ARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAV 407
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 24-275 7.00e-19

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 87.31  E-value: 7.00e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614  24 NHWVTAWAGLEINTLAILPLIS-KSHHPRSIEAATKYFLTQATASALLLFSSMTNAWHTGQWDITQMTHPMSCLILT--- 99
Cdd:TIGR01770 122 NDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFLSNGMLNisl 201

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614 100 ---------SAIAMKLGLVPFHFWFPEVLQGAPLTTGLLLSTVMK---FPPITLLFMT-----SHSLNPTVLVwMAILSA 162
Cdd:TIGR01770 202 lllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaiFAVFLRLFLYilfgfSEAWQIFLAI-IAFLSM 280

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614 163 ALGGWMGLNQTQTRKILAFSSISHLGWMAIIISYSPKLTLLN--FY--IYLLMTTAVFMTLHTIKALK------LSTLMT 232
Cdd:TIGR01770 281 LIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYifIYALMSLGAFGVLSLLRSYKdewieyISDFAG 360

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 1022695614 233 TWTKTPALSAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDM 275
Cdd:TIGR01770 361 LFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGL 403
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 7.52e-153

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 433.09  E-value: 7.52e-153
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614   1 MNPQAKLIFAISLLTGTTLTITSNHWVTAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQATASALLLFSSMTNAWH 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614  81 TGQWDITQMTHPMSCLILTSAIAMKLGLVPFHFWFPEVLQGAPLTTGLLLSTVMKFPPITLLFMTSHSLNPTVLVWMAIL 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614 161 SAALGGWMGLNQTQTRKILAFSSISHLGWMAIIISYSPKLTLLNFYIYLLMTTAVFMTLHTIKALKLSTLMTTWTKTPAL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614 241 SAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAAITISLLSLLGLFFYLRLAYCATITLPPHTTNHIKQWHTNKP 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 1022695614 321 TSTLIAVLTVMSTMLLPISPMMYSII 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-346 4.13e-123

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 357.69  E-value: 4.13e-123
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614   1 MNPQAKLIFAISLLTGTTLTITSNHWVTAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQATASALLLFSSMTNAWH 80
Cdd:MTH00070    1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614  81 TGQWDITQMTHPMSCLILTSAIAMKLGLVPFHFWFPEVLQGAPLTTGLLLSTVMKFPPITLLFMTSHSLNPTVLVWMAIL 160
Cdd:MTH00070   81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614 161 SAALGGWMGLNQTQTRKILAFSSISHLGWMAIIISYSPKLTLLNFYIYLLMTTAVFMTLHTIKALKLSTLMTTWTKTPAL 240
Cdd:MTH00070  161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614 241 SAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAAITISLLSLLGLFFYLRLAYCATITLPPHTTNHIKQWHTNKP 320
Cdd:MTH00070  241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320

                         330       340
                  ....*....|....*....|....*.
gi 1022695614 321 TSTLIAVLTVMSTMLLPISPMMYSII 346
Cdd:MTH00070  321 TNNLLSLTIILSLMLLPITPTILNLF 346
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 25-346 6.00e-122

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 354.88  E-value: 6.00e-122
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614  25 HWVTAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQATASALLLFSSMTNAWHTGQWDITQMTHPMSCLILTSAIAM 104
Cdd:MTH00135   25 HWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGQWDIQQMSHPLPTTMITLALAL 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614 105 KLGLVPFHFWFPEVLQGAPLTTGLLLSTVMKFPPITLLFMTSHSlNPTVLVWMAILSAALGGWMGLNQTQTRKILAFSSI 184
Cdd:MTH00135  105 KIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLTSTLVGGWGGLNQTQLRKILAYSSI 183

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614 185 SHLGWMAIIISYSPKLTLLNFYIYLLMTTAVFMTLHTIKALKLSTLMTTWTKTPALSAMLLLTLLSLAGLPPLTGFLPKW 264
Cdd:MTH00135  184 AHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPLILLSLGGLPPLTGFMPKW 263

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614 265 LIIQELTKQDMAPAAITISLLSLLGLFFYLRLAYCATITLPPHTTNHIKQWHTNKPTSTL-IAVLTVMSTMLLPISPMMY 343
Cdd:MTH00135  264 LILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPSTQLTLpLAISTTATLMLLPLTPAIL 343


                  ...
gi 1022695614 344 SII 346
Cdd:MTH00135  344 ALL 346
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-342 3.31e-109

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 322.18  E-value: 3.31e-109
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614   1 MNPQAKLIFAISLLTGTTLTITSNHWVTAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQATASALLLFSSMTNAWH 80
Cdd:MTH00105    1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614  81 TGQWDITQMTHPMSCLILTSAIAMKLGLVPFHFWFPEVLQGAPLTTGLLLSTVMKFPPITLLFMTSHSLNPTVLVWMAIL 160
Cdd:MTH00105   81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614 161 SAALGGWMGLNQTQTRKILAFSSISHLGWMAIIISYSPKLTLLNFYIYLLMTTAVFMTLHTIKALKLSTLMTTWTKTPAL 240
Cdd:MTH00105  161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614 241 SAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAAITISLLSLLGLFFYLRLAYCATITLPPHTTNHIKQWH-TNK 319
Cdd:MTH00105  241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQfENT 320

                         330       340
                  ....*....|....*....|...
gi 1022695614 320 PTSTLIAVLTVMSTMLLPISPMM 342
Cdd:MTH00105  321 KPMTLLPTLIILSTMLLPLTPML 343
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-346 8.31e-91

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 275.31  E-value: 8.31e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614   1 MNPQAKLIFAISLLTGTTLTITSNHWVTAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQATASALLLFSSMTNAWH 80
Cdd:MTH00200    1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614  81 TGQWDITQMTHPMSCLILTSAIAMKLGLVPFHFWFPEVLQGAPLTTGLLLSTVMKFPPITLLFMTSHSLNPTVLVWMAIL 160
Cdd:MTH00200   81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614 161 SAALGGWMGLNQTQTRKILAFSSISHLGWMAIIISYSPKLTLLNFYIYLLMTTAVFMTLHTIKALKLSTLMTTWTKTPAL 240
Cdd:MTH00200  161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614 241 SAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAAITISLLSLLGLFFYLRLAYCATITLPPHTTNHIKQWHTNKP 320
Cdd:MTH00200  241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320

                         330       340
                  ....*....|....*....|....*.
gi 1022695614 321 TSTLIAVLTVMSTMLLPISPMMYSII 346
Cdd:MTH00200  321 SNLLVGLLLLLSILGLPLTPQLLFLF 346
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 24-267 1.21e-72

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 229.05  E-value: 1.21e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614  24 NHWVTAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQATASALLLFSSMTNAWHTGQWDITQMTHPMSCLILTSAIA 103
Cdd:MTH00041   24 NHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGPLNTLSSIIITLALA 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614 104 MKLGLVPFHFWFPEVLQGAPLTTGLLLSTVMKFPPITLLFMTSHSLNPTVLVWMAILSAALGGWMGLNQTQTRKILAFSS 183
Cdd:MTH00041  104 LKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGGWGGLNQTQTRKILAFSS 183

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614 184 ISHLGWMAIIISYSPKLTLLNFYIYLLMTTAVFMTLHTIKALKLSTLMTTWTKTPALSAMLLLTLLSLAGLPPLTGFLPK 263
Cdd:MTH00041  184 IAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSILSLGGLPPLTGFLNK 263


                  ....
gi 1022695614 264 WLII 267
Cdd:MTH00041  264 FISL 267
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-345 2.66e-47

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 162.69  E-value: 2.66e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614   1 MNPQAKLIFAISLLTGTTLTITSNHWVTAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQATASALLLFSSMTNAWh 80
Cdd:MTH00160    2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614  81 tgqwdITQMTHPMSCLILTSAIAMKLGLVPFHFWFPEVLQGAPLTTGLLLSTVMKFPPITLLfmtSHSLNPTVLVWMAIL 160
Cdd:MTH00160   81 -----NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILL---SYLINNNFIIIIIIL 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614 161 SAALGGWMGLNQTQTRKILAFSSISHLGWMAIIISYSPKLTLLNFYIYLLMTTAVFMTLHTIKALKLSTLMTTWTKTPAL 240
Cdd:MTH00160  153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614 241 SAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAAITISLLSLLGLFFYLRLAYCATITLPPHTTNHIKQwhTNKP 320
Cdd:MTH00160  233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKK--KKNK 310

                         330       340
                  ....*....|....*....|....*
gi 1022695614 321 TSTLIAVLTVMSTMLLPISPMMYSI 345
Cdd:MTH00160  311 FSLILNFLSFISLFGLILSSLLFLL 335
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 25-275 1.68e-42

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 150.04  E-value: 1.68e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614  25 HWVTAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQATASALLLFSSMTNAWHTGQWDITqmthpmscLILTSAIAM 104
Cdd:MTH00144   25 HWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFSM--------SLLLLGLCL 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614 105 KLGLVPFHFWFPEVLQGAPLTTGLLLSTVMKFPPITLLFMTSHSLNP-TVLVWMAILSAALGGWMGLNQTQTRKILAFSS 183
Cdd:MTH00144   97 KLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSALVGSIGGLNQTQVRALLAYSS 176

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614 184 ISHLGWMAIIISYSPKLTLLNFYIYLLMTTAVFMTLHTiKALKLSTLMTTWTKTPALSAMLLLTLLSLAGLPPLTGFLPK 263
Cdd:MTH00144  177 ISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWS-GDSGSMKDLGSLKPSYKTGLSIISLLLSLGGLPPFLGFCSK 255

                         250
                  ....*....|..
gi 1022695614 264 WLIIQELTKQDM 275
Cdd:MTH00144  256 LLVLISSMESSP 267
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 24-340 3.09e-39

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 141.46  E-value: 3.09e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614  24 NHWVTAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQATASALLLFSSmtnawhTGQWDITQMTHPMSCLILTSAIA 103
Cdd:MTH00011   26 NNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWSFPSLLKNITALMLLVSLM 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614 104 MKLGLVPFHFWFPEVLQGAPLTTGLLLSTVMKFPPITLLFMTSHSLNPTVLVWMAILSAALGGWMGLNQTQTRKILAFSS 183
Cdd:MTH00011  100 LKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLGGMNQTQLRPLLAYSS 179

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614 184 ISHLGWMAIIISYSPKLTLLNFYIYLLMTTAVFMTLHTIKALKLSTLMTTWTKTPALSAMLLLTLLSLAGLPPLTGFLPK 263
Cdd:MTH00011  180 IGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSLGGLPPFTGFMPK 259

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1022695614 264 WLIIQELTKQDMAPAAITISLLSLLGLFFYLRLAYcATITLPPHTTNhikqwHTNKPTSTLIAVLTVMSTMLLPISP 340
Cdd:MTH00011  260 LMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIF-NFMYLSPTFSS-----LKSAPYEPKTKILISMCTLSLGLIP 330
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 24-270 2.58e-34

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 128.25  E-value: 2.58e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614  24 NHWVTAWAGLEINTLAILPLISKSHHPRSIEAATKYFLTQATASALLLFSSMTNAWHTgqwditqMTHPMSCLILTSAIA 103
Cdd:MTH00197   18 SNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL-------YLSLLSVVLVILGLL 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614 104 MKLGLVPFHFWFPEVLQGAPLTTGLLLSTVMKFPPITLLFMTSHslNPTVLVWMAILSAALGGWMGLNQTQTRKILAFSS 183
Cdd:MTH00197   91 LKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSS--SFMGLLICSVLSSLIGGIGGMNQSNIRQLLAYSS 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614 184 ISHLGWMAIIISYSPKLTLLNFYIYLLMTTAVFMTLHTIKALKLSTLMTTWTKTPALSAMLLLTLLSLAGLPPLTGFLPK 263
Cdd:MTH00197  169 IGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSLGGLPPLSGFFLK 248


                  ....*..
gi 1022695614 264 WLIIQEL 270
Cdd:MTH00197  249 WLILTSL 255
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 24-267 4.90e-25

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 103.96  E-value: 4.90e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614  24 NHWVTAWAGLEINTLAILPLI-SKSHHPRSIEAATKYFLTQATASALLLFS-------------SMTNAWHTGQWDITQM 89
Cdd:MTH00196   13 SNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINLVLNSGQSFSSV 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614  90 THPMSCLILTSAIAMKLGLVPFHFWFPEVLQGAPLTTGLLLSTVMKFPPITLLFmtSHSLNPTVLVWMAILSAALGGWMG 169
Cdd:MTH00196   93 SVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILV--SIGLNVNILLIGGLFSLFVGAIGA 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614 170 LNQTQTRKILAFSSISHLGWMAIIISY----SPKLTLLNFYIYLLMTTAVFMTLHTIKALK--LSTLMTTWTKTPALSAM 243
Cdd:MTH00196  171 LNQTKIKRLLAYSGIGHMGFVLWGIEIgsfeSIQASLVYLFIYIIMSICVFSIILALNVYKnlIIEFSGLSRRLPILAIT 250

                         250       260
                  ....*....|....*....|....
gi 1022695614 244 LLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00196  251 LALTFLSIAGIPPLVGFLGKWLIL 274
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 24-268 1.16e-23

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 98.54  E-value: 1.16e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614  24 NHWVTAWAGLEINTLAILPLI-SKSHHPRSIEAATKYFLTQATASALLLFSSMTNAWHTGQWDITQM-----------TH 91
Cdd:pfam00361   2 NDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssGL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614  92 PMSCLILTSAIAMKLGLVPFHFWFPEVLQGAPLTTGLLLSTVMKFPPITLLFMTSHSLNPT------VLVWMAILSAALG 165
Cdd:pfam00361  82 LLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSspfiqqILLILAIISMLLG 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614 166 GWMGLNQTQTRKILAFSSISHLGWMAIIIS----YSPKLTLLNFYIYLLMTTAVF-MTLHTIKALKLSTLMTT----WTK 236
Cdd:pfam00361 162 SLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFlCAGSVIYRRVHTRNIRDygglAKT 241

                         250       260       270
                  ....*....|....*....|....*....|..
gi 1022695614 237 TPALSAMLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 242 MPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 24-280 1.48e-23

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 100.96  E-value: 1.48e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614  24 NHWVTAWAGLEINTLAILPLIS-KSHHPRSIEAATKYFLTQATASALLLF-SSMTNAWhTGQWDITQMTHPMS------- 94
Cdd:COG1007   122 NDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSLNLAGIAAALAaggansp 200

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614  95 -----CLILTSAIAMKLGLVPFHFWFPEVLQGAPLTTGLLLSTVMK----FPPITLLFMTSHSLNP---TVLVWMAILSA 162
Cdd:COG1007   201 llllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaafAALLRLLVEAFPGLAAdwqLLLAVLAVLSM 280

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614 163 ALGGWMGLNQTQTRKILAFSSISHLGWMAI-IISYSPK-LTLLNFY--IYLLMTTAVF-----MTLHTIKALKLSTLMTT 233
Cdd:COG1007   281 TVGNLAALAQTNVKRMLAYSSIAHAGYLLLgLAAGTPLgVSAALFYllAYLFMNLGAFavillLSRKGGEAEEIEDLAGL 360

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 1022695614 234 WTKTPALSAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAAI 280
Cdd:COG1007   361 ARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAV 407
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 26-267 3.99e-22

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 96.62  E-value: 3.99e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614  26 WVTAWAGLEINTLAILPLIS-KSHHPRSIEAATKYFLTQATASALLLFSSMTNAWHTGQWDI----TQMTHPMSCLILTS 100
Cdd:MTH00199  119 WLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIqginSILTGDVGKILITI 198

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614 101 AIAMKLGLVPFHFWFPEVLQGAPLTTGLLLSTVMKFPPITLLFMTSHSLNptVLVWMAILSAALGGWMGLNQTQTRKILA 180
Cdd:MTH00199  199 SLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTN--VVLICAVLSIIYGAIGALNQTKIKRLLA 276

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614 181 FSSISHLGW----MAIIISYSPKLTLLNFYIYLLMTTAVFMTLHTIKALK--LSTLMTTWTKTPALSAMLLLTLLSLAGL 254
Cdd:MTH00199  277 YSGIGHMGFilfgVAIGSFESIQASLIYMIIYVIMSICSFSIILSLKLTKglIVEVSGLSRKNPVIALTLALTFLSIAGI 356

                         250
                  ....*....|...
gi 1022695614 255 PPLTGFLPKWLII 267
Cdd:MTH00199  357 PPLAGFLSKWLIL 369
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
24-280 4.25e-19

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 87.95  E-value: 4.25e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614  24 NHWVTAWAGLEINTLAILPLIS-KSHHPRSIEAATKYFLTQATASALLLFSSMTNAWHTGQWDITQMTHP---------- 92
Cdd:PRK05777  123 NDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIAKAladgsgnsll 202

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614  93 --MSCLILTSAIAMKLGLVPFHFWFPEVLQGAPLTTGLLLSTVMK---FPPIT-LLFMTSHSLNPT---VLVWMAILSAA 163
Cdd:PRK05777  203 llFGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaaFAVLLrLLVVAFGGLSEDwqqVLAIIAIASML 282

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614 164 LGGWMGLNQTQTRKILAFSSISHLGWM--AIIISYSPKLTLLNFY--IYLLMTTAVF-MTLHTIKALKLSTLMTTWT--- 235
Cdd:PRK05777  283 VGNLAALSQTNIKRLLAYSSIAHAGYLlvGLAAGTAEGYSAVLFYllAYLFMTLGAFgVISLLRRKGGEAESISDFAgls 362

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 1022695614 236 -KTPALSAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAAI 280
Cdd:PRK05777  363 kRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAV 408
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 24-275 7.00e-19

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 87.31  E-value: 7.00e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614  24 NHWVTAWAGLEINTLAILPLIS-KSHHPRSIEAATKYFLTQATASALLLFSSMTNAWHTGQWDITQMTHPMSCLILT--- 99
Cdd:TIGR01770 122 NDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFLSNGMLNisl 201

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614 100 ---------SAIAMKLGLVPFHFWFPEVLQGAPLTTGLLLSTVMK---FPPITLLFMT-----SHSLNPTVLVwMAILSA 162
Cdd:TIGR01770 202 lllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaiFAVFLRLFLYilfgfSEAWQIFLAI-IAFLSM 280

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614 163 ALGGWMGLNQTQTRKILAFSSISHLGWMAIIISYSPKLTLLN--FY--IYLLMTTAVFMTLHTIKALK------LSTLMT 232
Cdd:TIGR01770 281 LIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYifIYALMSLGAFGVLSLLRSYKdewieyISDFAG 360

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 1022695614 233 TWTKTPALSAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDM 275
Cdd:TIGR01770 361 LFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGL 403
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 30-282 2.41e-17

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 82.50  E-value: 2.41e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614  30 WAGLEINTLAILPLISKSHHPRSIEAATKYFLTQATASALLLFSSMTNAWHTGQWDITQMTHPMS----------CLILT 99
Cdd:COG0651   133 FVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAARLAeldpglllaaFALLL 212

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614 100 SAIAMKLGLVPFHFWFPEVLQGAPLTTGLLLSTVMKFPPI-------TLLFMTSHSLNP-TVLVWMAILSAALGGWMGLN 171
Cdd:COG0651   213 VGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLTKVGVyailrvlTLLFGADPALFLgTLLLVLGLLTMLVGALGALA 292

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614 172 QTQTRKILAFSSISHLGWMAIIISYSPKLTLLNFYIYL----LMTTAVFMT----LHTIKALKLSTLMTTWTKTPALSAM 243
Cdd:COG0651   293 QRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLlnhaLAKALLFLAagaiERATGTRDLDKLGGLGKRMPLTAAA 372

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 1022695614 244 LLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAAITI 282
Cdd:COG0651   373 FLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVL 411
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 25-267 1.90e-16

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 80.29  E-value: 1.90e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614  25 HWVTAWAGLEINTLAILPLISKSHHPRSI---------EAATKYFLTQATASALLLFSSMTNAWHTGQ------------ 83
Cdd:MTH00198  209 NWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNegmlgtilsatl 288

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614  84 --WDITQMTHPMSCLILTSAIAMKLGLVPFHFWFPEVLQGAPLTTGLLLSTVMKFPPITLLfmTSHSLNPTVLVWMAILS 161
Cdd:MTH00198  289 etTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILL--TSLVITSKLLLSVAIIS 366

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614 162 AALGGWMGLNQTQTRKILAFSSISHLGWMAIIISYSPKLTLLNFY----IYLLMTTAVFMTLHTIKAL------------ 225
Cdd:MTH00198  367 LVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWtyavTYLVSALASFTVICTLEEFgtrtptsrqrdg 446

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1022695614 226 ---------KLSTLMTTWTKTPALSAMLLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00198  447 sfgnynlvrRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFIL 497
ndhB CHL00049
NADH dehydrogenase subunit 2
 51-263 2.86e-13

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 70.42  E-value: 2.86e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614  51 RSIEAATKYFLTQATASALLL--FSSM--TNAWHTGQWDI------TQMTHPMSCLI----LTSAIAMKLGLVPFHFWFP 116
Cdd:CHL00049  159 RSNEATMKYLLMGGASSSILVygFSWLygLSGGEIELQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTP 238

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614 117 EVLQGAPL-----------TTGLLLSTVMkfppITLLFMTSHSLNPTVLVWMAILSAALGGWMGLNQTQTRKILAFSSIS 185
Cdd:CHL00049  239 DVYEGSPTpvvaflsvtskVAASALATRI----FDIPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIG 314

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614 186 HLGWMAI-IIS------YSPKLTLLNFYIyllmttavFMTLHTIKALKLSTLMT----------TWTKTPALSAMLLLTL 248
Cdd:CHL00049  315 QIGYVIIgIIVgdsndgYASMITYMLFYI--------FMNLGTFACIVLFGLRTgtdnirdyagLYTKDPFLALSLALCL 386

                         250
                  ....*....|....*
gi 1022695614 249 LSLAGLPPLTGFLPK 263
Cdd:CHL00049  387 LSLGGIPPLAGFFGK 401
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 49-192 3.49e-11

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 63.95  E-value: 3.49e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614  49 HPRSIEAATKYFLTQATASALLLFSSMTNAWHTGQW--DITQ-MTHPMS-------CLILTSAIAMKLGLVPFHFWFPEV 118
Cdd:COG1008   156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAElAAAPLPltaqlllFLAFFIAFAVKVPMFPFHTWLPDA 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614 119 LQGAPLTTGLLLSTVMK--------------FPPITLLFMTshslnptVLVWMAILSAALGGWMGLNQTQTRKILAFSSI 184
Cdd:COG1008   236 HVEAPTAGSVLLAGVLLkmggygllrfalplFPEASAYFAP-------LLAALGVIGIIYGALVALAQTDLKRLIAYSSV 308


                  ....*...
gi 1022695614 185 SHLGWMAI 192
Cdd:COG1008   309 SHMGFVLL 316
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-263 1.63e-09

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 58.91  E-value: 1.63e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614  50 PRSIEAATKYFLTQATASALLLF-SSMTNAWHTGQWDITQMTHPM----------SCLILTSAIAMKLGLVPFHFWFPEV 118
Cdd:PRK02504  157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGSTQLSAIALALitspslglalALVFVIAGIAFKISAVPFHQWTPDV 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614 119 LQGAPLTTGLLLST--------------VMKFPPIT----LLFmtshslnpTVLvwmAILSAALGGWMGLNQTQTRKILA 180
Cdd:PRK02504  237 YEGSPTPVVAFLSVgskaagfalairllVTAFPSFDeqwkLLF--------TAL---AILSMVLGNVVALAQTSMKRMLA 305

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614 181 FSSISHLGWMAI--IISYSPKLTLLNFY--IYLLMTTAVFM--TLHTIK--ALKLSTLMTTWTKTPALSAMLLLTLLSLA 252
Cdd:PRK02504  306 YSSIGQAGFVMIglVAGTEAGYASMVFYllAYLFMNLGAFAcvILFSLRtgTDQISDYAGLYQKDPLLTLGLSLCLLSLG 385

                         250
                  ....*....|.
gi 1022695614 253 GLPPLTGFLPK 263
Cdd:PRK02504  386 GIPPLAGFFGK 396
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-266 3.03e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 55.10  E-value: 3.03e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614  33 LEINTLAILPLIS-KSHHPRSIEAATKYFLTQATASALLLFS---------SMTNAWHTGQWDITQMTHPMSCL-ILTSA 101
Cdd:PRK08376  150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGiallygqygTLNMAYLAVKMSENPTVVAKIALaLFIAG 229

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614 102 IAMKLGLVPFHFWFPEVLQGAPLTTGLLLsTVMKFPPITLLFMTSHSL-----NPTVLVW----MAILSAALGGWMGLNQ 172
Cdd:PRK08376  230 LAMKSGAVPVHMWLPDAYPAAPSSISAML-LVIKQAGLYALARVLFSIygpaiNLATVGWviiiLGCLTMFVGVAMAVVQ 308

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614 173 TQTRKILAFSSISHLGWM------AIIISYSPKLT-------------LLNFYIY----LLMTTAVFMTLHTIKALKLST 229
Cdd:PRK08376  309 KDVKRLLAYHSVSQIGYMllglgvGLAALGDPAMAsygeialaggiyhIVNHALYkallFLTAGAVIYETGTRNLNELGG 388

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 1022695614 230 LMTTWTKTpalSAMLLLTLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK08376  389 LARTMPKT---TIAFLIGAAAIVGLPPFNGFASKWLI 422
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-194 4.82e-08

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 54.18  E-value: 4.82e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614  50 PRSIEAATKYFLTQATASALLLFSSMTNAW-HTGQWDITQ-MTHPMSC-------LILTSAIAMKLGLVPFHFWFPEVLQ 120
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFlGGGTFDLLElLNLPLPFgvqtwlfLAFFIAFAVKVPLFPLHTWLPDAHV 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614 121 GAPLTTGLLLSTVMK--------------FPPITLLFMtshslnpTVLVWMAILSAALGGWMGLNQTQTRKILAFSSISH 186
Cdd:TIGR01972 232 EAPTAGSVILAGVLLkmgtygflrfnlplFPDASLYFA-------PVLAALGVIAIIYGALIALAQTDIKRLIAYSSISH 304


                  ....*...
gi 1022695614 187 LGWMAIII 194
Cdd:TIGR01972 305 MGFVLLGI 312
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 2-275 2.20e-06

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 49.22  E-value: 2.20e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614   2 NPQAKLIFAISLLTGTTLTITSNHWVTAWAGLEINTLAILPLISKSHHpRSIEAATKYFLTQATASALLLFSSMTNAWHT 81
Cdd:PRK08668   96 NDAYFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKT 174

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614  82 GQWDIT-------QMTHPMSCLI----LTSAIAMKLGLVPFHFWFPEVLQGAPLTTGLLLS------------TVMKFPP 138
Cdd:PRK08668  175 GTFDFAdisqgliNDTSTGFALIvflfLLAFGVAKAGIFPLHVWAPDAYSEAPQSFSAVLSgqlsklgaygflLVLYVLP 254

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614 139 ITLLFMT-----SHSLNPTVLVWMAILSAALGGWMGLNQTQTRKILAFSSISHLGW----MAIIISYSPKLTLLNFYIYL 209
Cdd:PRK08668  255 GTKLFSEfgtyrGVPLFNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYilvgLGLGTSLGFAGGLFHVFNHA 334

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614 210 LMTTAVFMTLHTI----KALKLSTLMTTWTKTPALSAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDM 275
Cdd:PRK08668  335 LFKGLFFLIFAAViyrtGTTKISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGM 404
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 295-340 2.31e-06

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 44.17  E-value: 2.31e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1022695614 295 RLAYCATITLPPHTTNHIKQWHTNKP-TSTLIAVLTVMSTMLLPISP 340
Cdd:pfam06444   5 RLSYSTTLTLFPNTNNSKMKWRFNSTkNTLLLPTLTTLSILLLPLTP 51
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-282 3.33e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 48.72  E-value: 3.33e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614  33 LEINTLAILPLISKSHHPRSIEAATKYFLTQATASALLLFS-----SMTNAWHTGqwDITQMTHPMSCL-----ILTSAI 102
Cdd:PRK08375  135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvgllyGVTGTLNMA--DLAGALAENPTVvtafgFVLLAL 212

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614 103 AMKLGLVPFHFWFPEVLQGAPLTTGLLLS-TVMK----------FPPITLLFMTSHSLNpTVLVWMAILSAALGGWMGLN 171
Cdd:PRK08375  213 ALKAAVFPLHTWLPRAYPAAPPVVTALLSgLVTKvavyaliriyFTVFGGDFRFALGLG-WLLAVLALLSMLVGSLAALG 291

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614 172 QTQTRKILAFSSISHLGWMAIIISYSPKLTLLNFYIYL-----------LMTTAVFMTLHTIKALKLSTLMTtwtKTPAL 240
Cdd:PRK08375  292 QDDVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLlhhalmkgalfLAAGAIEVTYGTRRLSELSGLGR---RMPLT 368

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 1022695614 241 SAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAAITI 282
Cdd:PRK08375  369 AAAFAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVL 410
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 50-194 3.33e-06

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 48.66  E-value: 3.33e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614  50 PRSIEAATKYFLTQATASALLLFSSMTNAWH----TGQWDITQ-MTHPMSC-------LILTSAIAMKLGLVPFHFWFPE 117
Cdd:PRK05846  157 KNRIYAATKFFLYTLLGSLLMLVAIIYLVVVyynaTGTFDIADlLNLPLPPgvqywlfLAFFIAFAVKMPMFPLHTWLPD 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614 118 VLQGAPLTTGLLLSTVMK--------------FPPITLLFMTshslnptVLVWMAILSAALGGWMGLNQTQTRKILAFSS 183
Cdd:PRK05846  237 AHVQAPTAGSVLLAGILLkmgaygllrfslplFPDASHEFAP-------IIITLGVIAIIYGALVALAQTDIKKLIAYSS 309

                         170
                  ....*....|.
gi 1022695614 184 ISHLGWMAIII 194
Cdd:PRK05846  310 ISHMGFVTLGI 320
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 30-192 5.29e-06

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 48.00  E-value: 5.29e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614  30 WAGLEINTLAILPLISKSHHPRSIEAATKYFL------TQATASALLLFSSMTnawhtgqwdiTQMTHPMSCLILTSAIA 103
Cdd:PRK06458  134 WVAIEATTLSSALLVGIYRTRASLEAAWKYIIicsvgvAFALFGTILVYANAA----------TVMGDGEMAILWTELLK 203

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614 104 M----------------------KLGLVPFHFWFPEVLQGAP-----LTTGLLLST----VMKFPPITLLFMTSHSLNPt 152
Cdd:PRK06458  204 HaslldptlmklafvflligfgtKVGLFPMHAWLPDAHSEAPspvsaLLSGVLLNValyaVLRYYILIDAAIGSDFPGR- 282

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1022695614 153 VLVWMAILSAALGGWMGLNQTQTRKILAFSSISHLGWMAI 192
Cdd:PRK06458  283 LLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAF 322
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 30-219 6.48e-06

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 47.83  E-value: 6.48e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614  30 WAGLEINTLAILPLISKSHHPRSIEAATKYFLTQATA------SALLLFSSMTNAWHTGQWDITQMTHP----------M 93
Cdd:PRK08676  128 WIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNWTELAAHasllspsvlgA 207

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614  94 SCLILTSAIAMKLGLVPFHFWFPEVLQGAPLTTGLLLSTVMKFPPITLLFMTSHSLNPT--------VLVWMAILSAALG 165
Cdd:PRK08676  208 SFLFIFIGFLAKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLSALLRQSgaaeqfsnVLIGLGIFSIAVA 287

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1022695614 166 GWMGLNQTQTRKILAFSSISHLGWMAIIISYSPKLTLLNFYIYLLMTTAVFMTL 219
Cdd:PRK08676  288 AFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLVKSGL 341
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 96-194 2.27e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 46.46  E-value: 2.27e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614  96 LILTSAIAmKLGLVPFHFWFPEVLQGAPLTTGLLLSTVMKFPPITLL------FMTSHSLNPTVLVwMAILSAALGGWMG 169
Cdd:PRK12644  208 LILVGALS-KSAIVPFHFWLPGAMAAPTPVSAYLHAAAMVKAGIYLVarlapgFADVPVWRPTVLV-LGLATMLLGGWRA 285

                          90       100
                  ....*....|....*....|....*
gi 1022695614 170 LNQTQTRKILAFSSISHLGWMAIII 194
Cdd:PRK12644  286 LRQHDLKLILAYGTVSQLGFLTVLV 310
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-267 3.25e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 45.50  E-value: 3.25e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614  33 LEINTLAILPLISKSHHPRSIEAATKYFLTQATASALLLFS-----SMTNAWHTGqwDITQMTHPM--------SCLILT 99
Cdd:PRK12662  139 LEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGigflyAITGTLNMG--DMFLIIQDLptnraiqiGVLFIM 216

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614 100 SAIAMKLGLVPFHFWFPEVLQGAPLTTGLLLS----TVMKFPPITL--------LFMTSHSLNpTVLVWMAILSAALGGW 167
Cdd:PRK12662  217 VGLFIKAALFPFHKWLIQAYSEAPSFISVFFSgtstKVMIYLIIRIvydvfkanFVFTTLPFN-NVFMILAALAIVFGSV 295

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614 168 MGLNQTQTRKILAFSSISHLGWMAIIISYSPKLTLLNFYIYL----LMTTAVFMTLHTIK----ALKLSTLMTTWTKTPA 239
Cdd:PRK12662  296 LAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIvnhsIVKSALFMVSGSISyhfgTTKLEDCLNLWKSMPK 375

                         250       260
                  ....*....|....*....|....*...
gi 1022695614 240 LSAMLLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:PRK12662  376 ITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 48-190 1.55e-04

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 43.60  E-value: 1.55e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614  48 HHPRSIEAATKYFLTQATASALLLFSSMTNAWHTGQWDITQMTH------------PMSCLILTSAIAmKLGLVPFHFWF 115
Cdd:COG1009   156 EKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELLAaaptilssplltLILLLLLLGAFG-KSAQFPLHFWL 234

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614 116 PEVLQG-----APL------TTGLLLstVMKFPPItlLFMTSHSLnpTVLVWMAILSAALGGWMGLNQTQTRKILAFSSI 184
Cdd:COG1009   235 PDAMEGptpvsALLhaatmvKAGVYL--LARLSPL--FALSPVWL--TVVAIIGAITALFAALIALAQTDIKRVLAYSTV 308


                  ....*.
gi 1022695614 185 SHLGWM 190
Cdd:COG1009   309 SQLGYM 314
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
55-203 1.55e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 43.54  E-value: 1.55e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614  55 AATKYFLTQATASALLLFSSMTNAWHTGQWDI---TQMTH--PMSCLILTSA-----IAMKLGLVPFHFWFPEVLQGAPL 124
Cdd:PRK06473  158 AATKFLLYTAISGILILVSFLGLVWLSGASSFdyePLRSHtlPLSTQLLLLApilvgFGIKIPLVPFHTWLPDAHVEAST 237

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614 125 TTGLLLSTVM---------KFPpITLLFMTSHSLNPTVLVWmAILSAALGGWMGLNQTQTRKILAFSSISHLGWMAIIIS 195
Cdd:PRK06473  238 PVSVLLAGVLlklgtygllRFG-VGLFPEAWVYLAPWLATW-AVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILLAAA 315


                  ....*...
gi 1022695614 196 YSPKLTLL 203
Cdd:PRK06473  316 AATPLSIL 323
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 109-282 1.69e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 43.37  E-value: 1.69e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614 109 VPFHFWFPEVLQGAPLTTGLLLSTVMKFPPITLLFMTSHSLNPTVLvWMAILSAA------LGGWMGLNQTQTRKILAFS 182
Cdd:PRK12647  212 FPFHFWLPNAMEAPTPVSAYLHSATMVKAGIYLLARLNPVLGGTPL-WQTILPLFggltmlTGALLAVRQTDLKLILAYS 290

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614 183 SISHLGWMAIIISYSPKLTLLNFYIYL----LMTTAVFMTLHTIK-------ALKLSTLmttWTKTPALSAMLLLTLLSL 251
Cdd:PRK12647  291 TVSALGTLVMLLGLGSELAIKAAVLFLvahsLYKGALFMVAGIIDhetgtrdITKLGGL---RRAMPITAAAALLAALSM 367

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1022695614 252 AGLPPLTGFLPKWLIIQELTKQDMAPAAITI 282
Cdd:PRK12647  368 AGLPPLFGFLAKELIYEALLEAPLWSLILTV 398
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
34-268 2.21e-04

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 42.71  E-value: 2.21e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614  34 EINTLAILPLISKSHHPRSIEAATKYFLTQATASALLLFSSMTNAWHTGQWDITQM-----THPMSCLILTSAIAMKLGL 108
Cdd:PRK06277  130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDIhnallVNPTSPVIYGGLLLLIFGL 209

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614 109 V------PFHFWFPEVLQGAPLTTGLLLSTVMKFPPITL---LFMTSHSLN-----PTVLVWMAILSAALGGWMGLNQTQ 174
Cdd:PRK06277  210 LygsglpPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALmlvIFKLFGGLSyfpsaQGVLIALSVLAMVFGVVMALLQTD 289

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614 175 TRKILAFSSISHLGWMAIIISYSPKLTL-------LNFYIYllmTTAVFMTLHTI----KALKLSTLMTTWTKTPALSAM 243
Cdd:PRK06277  290 YKRLLAYHAISQGGYVAAGLALGTPLGIvagifhaINHVIY---KSALFLGAGIVsyrtKTSNLRKLGGLLPVMPVVAFM 366

                         250       260
                  ....*....|....*....|....*
gi 1022695614 244 LLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK06277  367 VLCAKLAISGVPPFNGFQSKLMLAQ 391
PRK12650 PRK12650
DUF4040 family protein;
98-263 4.41e-04

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 42.34  E-value: 4.41e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614  98 LTSAIAM--------KLGLVPFHFWFPEVLQGA-PLTTGLLLSTVMKFPPITLL-FMTSHSLNPT---VLVWMAILSAAL 164
Cdd:PRK12650  206 LTTVVAVliavaaftKSAQFPFHFWLPEAMAAItPVSAFLHAAAVVKAGIYLLLrFSPVFHDVAVwnwLLIIVGMITALM 285

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614 165 GGWMGLNQTQTRKILAFSSISHLGWMAIIISYSPKLTLLNFYIYL----LMTTAVFMTL----HTIKALKLSTLMTTWTK 236
Cdd:PRK12650  286 GAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTlahaLFKSSLFMLIgvvdHQAGTRDIRRLGSLWRR 365

                         170       180
                  ....*....|....*....|....*..
gi 1022695614 237 TPALSAMLLLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12650  366 MPFTFVSVTIAALSMAAVPPLFGFVSK 392
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-189 6.50e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 41.48  E-value: 6.50e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614  33 LEINTLAILPLISKSHHPRSIEAATKYFLTQATASALLLFSSMTNAWHTGQWDIT--QMTHPMSCLILTSAIAMKLGLVP 110
Cdd:PRK07234  123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSglATADPEAFALIALGLLVKGGIFV 202

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614 111 FHFWFPEVLQGAPLTTGLLLSTVMKFPPITLLFMTSHSLNPT--VLVWMAILSAALGGWMGLNQTQTRKILAFSSISHLG 188
Cdd:PRK07234  203 SGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVRCALDVPGLdlIVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQLG 282


                  .
gi 1022695614 189 W 189
Cdd:PRK07234  283 F 283
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
34-268 1.32e-03

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 40.32  E-value: 1.32e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614  34 EINTLAILPLISKSHHPRSIEAATKYFLTQATASALLL---------FSSMTNAWHTGQWDITQMTHPMSCL--ILTSAI 102
Cdd:PRK12663  138 EVMLIASFVLITLGQEREQLRGAIKYVVLNLIGSWLFLlgigllygtFGTLNMAHIAMRLNDMGDTATLTTIalLFLLAF 217

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614 103 AMKLGLVPFhFWFPEVLQGAPLTTGLLLSTVMK-------FPPITLLFMTSHSLNPTVLVWMAILSAALGGWMGLNQTQT 175
Cdd:PRK12663  218 GMKAALFPF-MWLPAAYHTPNTEVAALFAALLTkvgiyalIRVFTLLFPQERELLHPLLATMAAITMVIGALGALAYKDI 296

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614 176 RKILAFSSISHLGWMAIIISYSPKLTLLNFYIYLL----MTTAVFMTLHTIKAL----KLSTLMTTWTKTPALSAMLLLT 247
Cdd:PRK12663  297 RRIAGYQVISSIGFILLGLALGTPAGINGAIFYLVhdmvVKTALFLIAGSLVRLtgyrSLQYLGGLYRKEPLFGALFLIL 376

                         250       260
                  ....*....|....*....|.
gi 1022695614 248 LLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK12663  377 IFAIGGLPPFSGFWGKVLLVQ 397
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 55-188 1.42e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 40.48  E-value: 1.42e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614  55 AATKYF-LTQ-ATASALLLFSSM---TNAWHTGQWDITQMTHPMSCLILTSAIAMKLGLVPFHFWFPEVLQGAPLTTGLL 129
Cdd:PRK08667  163 AGIFYFvMTQlSTVFLMLGIIVLfiqTGSFELSPLGASAGILSLVFLLLFLGFGIKAGIIPFHKWLPYAHPASPSNVSAL 242

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1022695614 130 LSTVM-KFPPITLLFMTSHSLNP-----TVLVWMAILSAALGGWMGLNQTQTRKILAFSSISHLG 188
Cdd:PRK08667  243 MSGVMlKVAVYGLVRFLMDVLSPelwwgVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIG 307
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 101-232 1.61e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 40.29  E-value: 1.61e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614 101 AIAMKLGLVPFHFWFPEVLQGAPLTTGLLLSTV-----------MKFPpitLLFMTSHSLNPTVLVwMAILSAALGGWMG 169
Cdd:MTH00226  239 AMAVKIPIFPFHIWLPKAHVEAPVAGSVLLAGIllklggyglvrLSWP---ILPLGAQNLAPAVIA-MGIVGIVYGSFAT 314

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1022695614 170 LNQTQTRKILAFSSISHLGWMAIiisyspklTLLNFYIYLLMTTAVFMTLHTIKALKLSTLMT 232
Cdd:MTH00226  315 CRQIDVKRLVAYSSVAHMGLVSI--------TLVTHDIIGLTGSIFIMLAHGIVSSLLFILVT 369
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 48-197 2.00e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 40.20  E-value: 2.00e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614  48 HHPRSIEAATKYFLTQATASALLLFSSMTNAWHTGQWDITQMTHPMS---------------CLILTSAiAMKLGLVPFH 112
Cdd:PRK12649  156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSElienikghplflitlILIFIGA-AAKSAQGPFY 234

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614 113 FWFPEVLQGAPLTTGLLLSTVMKFPPITLLfMTSHSLNPTVLVWMAILSAA------LGGWMGLNQTQTRKILAFSSISH 186
Cdd:PRK12649  235 IWLPNAMEAPTPVSAFLHSATMVKAGVYLV-ARIHPIFSGTEAWFILVSGTgmitmvLAGFLAFRQTDIKAILAYSTISQ 313

                         170
                  ....*....|.
gi 1022695614 187 LGWMAIIISYS 197
Cdd:PRK12649  314 LAYLMTMYGYT 324
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-195 3.21e-03

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 39.24  E-value: 3.21e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614  55 AATKYFLTQATASALLLFSSMTNAWHTGQ--WDITQMTH---PMSCLILTSA---IA--MKLGLVPFHFWFPEVLQGAPL 124
Cdd:PRK12561  138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGAksyPLALELLLYAgflIAfgVKLPIFPLHTWLPDAHGEASA 217

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1022695614 125 TTGLLLSTVM-KFPPITL------LFMTSHSLNPTVLVWMAILSAALGGWMGLNQTQTRKILAFSSISHLGWMAIIIS 195
Cdd:PRK12561  218 PVSMILAGVLlKMGGYALirfnvqMLPDAHVYFAPALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLLGIA 295
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
54-190 4.45e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 38.85  E-value: 4.45e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614  54 EAATKYFLTQATASALLLFSSMTNAWHTGQWDITQMTHPMSCLILTSAIAMKLGLV----------------PFHFWFPE 117
Cdd:PRK07376  173 DAAQKAFVVNRVGDFGLLLGILGLFWATGSFDFDGIADRLSELVSSGAVSGWLALLlcilvflgpmaksaqfPLHVWLPD 252

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1022695614 118 VLQGAPLTTGLLLSTVMKFPPITLLFMTSHSLNP-----TVLVWMAILSAALGGWMGLNQTQTRKILAFSSISHLGWM 190
Cdd:PRK07376  253 AMEGPTPISALIHAATMVAAGVFLVARMYPVFEQfpavmTVIAWTGAITAFLGASIALTQNDIKKGLAYSTISQLGYM 330
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 96-268 4.82e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 38.80  E-value: 4.82e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614  96 LILTSAIAMKLGLVPFHFWFPEVLQGAP-LTTGL---LLSTVMKFPPI---TLLFmTSHSLNpTVLVWMAILSAALGGWM 168
Cdd:PRK12665  213 AVLLVAFGIKAAVFPLSFWLPDSYPTAPaPVTAVfagLLTKVGVYAIIrthTLLF-PGGGLD-TLLMVVALLTMVVGILG 290

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614 169 GLNQTQTRKILAFSSISHLGWMAIIISYSPKLTLLN--FYI--YLLMTTAVFMTLHTIK----ALKLSTLMTTWTKTPAL 240
Cdd:PRK12665  291 AIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGLSGaiYYVahHITVQTTLFLVVGLIErqagSSSLRRLGGLAKASPLL 370

                         170       180
                  ....*....|....*....|....*...
gi 1022695614 241 SAMLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK12665  371 AVLFFVPALNLGGIPPFSGFIGKVALLE 398
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
55-203 7.56e-03

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 38.15  E-value: 7.56e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614  55 AATKYFLTQATASALLLFSSMTNAWHTGQWD------ITQMTHPMSCLILTSAI----AMKLGLVPFHFWFPEVLQGAPL 124
Cdd:PRK07363  158 ASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSfdydaiSTQNLSLNTQLILLTGLllgfGIKIPLVPLHTWLPDAYTEASP 237

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022695614 125 TTGLLLSTVM---------KFPpITLLFMTSHSLNPTVLVWMAIlSAALGGWMGLNQTQTRKILAFSSISHLGWMAIIIS 195
Cdd:PRK07363  238 AVAILLGGVLaklgtygllRFG-LQLFPQTWSLVAPGLAIIGTI-SVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAA 315


                  ....*...
gi 1022695614 196 YSPKLTLL 203
Cdd:PRK07363  316 AGTQLSLL 323
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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